Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053132.t1 | XP_013454608.1 | 97.5 | 240 | 6 | 0 | 1 | 240 | 1 | 240 | 1.00E-116 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053132.t1 | Q93VG8 | 47.2 | 178 | 90 | 1 | 28 | 201 | 27 | 204 | 2.3e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053132.t1 | A0A072UFW2 | 97.5 | 240 | 6 | 0 | 1 | 240 | 1 | 240 | 7.5e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052254 | MS.gene053132 | 0.821 | 5.09E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene053132 | 0.841056 | 5.99E-58 | -1.69E-46 |
| MS.gene053132 | MS.gene053437 | 0.821004 | 5.08E-53 | -1.69E-46 |
| MS.gene053132 | MS.gene058906 | 0.806712 | 7.20E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene06001 | 0.813828 | 2.10E-51 | -1.69E-46 |
| MS.gene053132 | MS.gene061618 | 0.825138 | 5.52E-54 | -1.69E-46 |
| MS.gene053132 | MS.gene062352 | 0.834337 | 3.18E-56 | -1.69E-46 |
| MS.gene053132 | MS.gene065136 | -0.811281 | 7.57E-51 | -1.69E-46 |
| MS.gene053132 | MS.gene065378 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene065392 | 0.826634 | 2.44E-54 | -1.69E-46 |
| MS.gene053132 | MS.gene06594 | 0.824036 | 1.00E-53 | -1.69E-46 |
| MS.gene053132 | MS.gene067029 | 0.806727 | 7.15E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene06806 | 0.827073 | 1.91E-54 | -1.69E-46 |
| MS.gene053132 | MS.gene071290 | 0.800007 | 1.76E-48 | -1.69E-46 |
| MS.gene053132 | MS.gene073884 | 0.815347 | 9.69E-52 | -1.69E-46 |
| MS.gene053132 | MS.gene074465 | 0.827564 | 1.46E-54 | -1.69E-46 |
| MS.gene053132 | MS.gene21089 | 0.810118 | 1.35E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene22983 | 0.807264 | 5.50E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene25077 | 0.822277 | 2.58E-53 | -1.69E-46 |
| MS.gene053132 | MS.gene27991 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene35147 | 0.807714 | 4.42E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene35214 | 0.804085 | 2.56E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene38255 | 0.80825 | 3.40E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene38293 | 0.903368 | 3.73E-79 | -1.69E-46 |
| MS.gene053132 | MS.gene40106 | 0.805833 | 1.10E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene41132 | 0.806012 | 1.01E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene47955 | 0.81066 | 1.03E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene55732 | 0.808672 | 2.76E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene56555 | 0.837111 | 6.30E-57 | -1.69E-46 |
| MS.gene053132 | MS.gene59876 | 0.808589 | 2.88E-50 | -1.69E-46 |
| MS.gene053132 | MS.gene69262 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene71830 | -0.815098 | 1.10E-51 | -1.69E-46 |
| MS.gene053132 | MS.gene73391 | 0.803835 | 2.88E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene86350 | 0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene86678 | 0.818209 | 2.21E-52 | -1.69E-46 |
| MS.gene053132 | MS.gene88087 | 0.829586 | 4.74E-55 | -1.69E-46 |
| MS.gene053132 | MS.gene89562 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene96810 | 0.835839 | 1.33E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053132.t1 | MTR_4g008530 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 0.0 | 497 |
| MS.gene053132.t1 | MTR_1g013110 | 73.793 | 145 | 38 | 0 | 25 | 169 | 15 | 159 | 6.34e-80 | 239 |
| MS.gene053132.t1 | MTR_3g106240 | 56.931 | 202 | 78 | 3 | 25 | 225 | 15 | 208 | 7.48e-78 | 234 |
| MS.gene053132.t1 | MTR_1g034490 | 53.158 | 190 | 85 | 2 | 4 | 192 | 18 | 204 | 9.69e-73 | 222 |
| MS.gene053132.t1 | MTR_1g022015 | 55.135 | 185 | 79 | 2 | 10 | 193 | 25 | 206 | 2.33e-70 | 216 |
| MS.gene053132.t1 | MTR_5g013040 | 56.209 | 153 | 67 | 0 | 19 | 171 | 15 | 167 | 1.05e-65 | 203 |
| MS.gene053132.t1 | MTR_4g100500 | 57.343 | 143 | 61 | 0 | 29 | 171 | 24 | 166 | 3.18e-63 | 197 |
| MS.gene053132.t1 | MTR_5g013040 | 55.556 | 153 | 65 | 1 | 19 | 171 | 15 | 164 | 4.31e-62 | 194 |
| MS.gene053132.t1 | MTR_4g113720 | 45.833 | 168 | 88 | 1 | 29 | 196 | 31 | 195 | 2.89e-56 | 179 |
| MS.gene053132.t1 | MTR_4g113720 | 45.833 | 168 | 88 | 1 | 29 | 196 | 31 | 195 | 3.25e-56 | 179 |
| MS.gene053132.t1 | MTR_2g054770 | 45.055 | 182 | 86 | 2 | 34 | 201 | 33 | 214 | 4.22e-56 | 179 |
| MS.gene053132.t1 | MTR_5g013040 | 48.980 | 147 | 68 | 2 | 31 | 176 | 20 | 160 | 2.98e-50 | 163 |
| MS.gene053132.t1 | MTR_1g100100 | 39.007 | 141 | 67 | 5 | 29 | 153 | 4 | 141 | 9.14e-25 | 98.2 |
| MS.gene053132.t1 | MTR_6g048290 | 37.857 | 140 | 71 | 5 | 29 | 153 | 4 | 142 | 1.12e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053132.t1 | AT1G80690 | 68.306 | 183 | 53 | 4 | 12 | 193 | 1 | 179 | 2.02e-89 | 264 |
| MS.gene053132.t1 | AT1G80690 | 66.845 | 187 | 53 | 5 | 12 | 193 | 1 | 183 | 4.81e-87 | 258 |
| MS.gene053132.t1 | AT5G25170 | 66.463 | 164 | 55 | 0 | 25 | 188 | 16 | 179 | 2.00e-80 | 240 |
| MS.gene053132.t1 | AT2G25190 | 68.125 | 160 | 50 | 1 | 12 | 170 | 1 | 160 | 8.26e-79 | 237 |
| MS.gene053132.t1 | AT4G31980 | 65.000 | 160 | 55 | 1 | 12 | 170 | 1 | 160 | 8.21e-72 | 232 |
| MS.gene053132.t1 | AT1G47740 | 54.255 | 188 | 82 | 1 | 4 | 191 | 46 | 229 | 1.31e-71 | 220 |
| MS.gene053132.t1 | AT1G47740 | 54.255 | 188 | 82 | 1 | 4 | 191 | 46 | 229 | 1.31e-71 | 220 |
| MS.gene053132.t1 | AT1G47740 | 54.255 | 188 | 82 | 1 | 4 | 191 | 46 | 229 | 1.31e-71 | 220 |
| MS.gene053132.t1 | AT5G47310 | 54.483 | 145 | 66 | 0 | 27 | 171 | 28 | 172 | 2.30e-63 | 198 |
| MS.gene053132.t1 | AT4G17486 | 48.503 | 167 | 86 | 0 | 28 | 194 | 27 | 193 | 1.50e-62 | 195 |
| MS.gene053132.t1 | AT5G25170 | 61.940 | 134 | 51 | 0 | 55 | 188 | 2 | 135 | 1.21e-57 | 181 |
| MS.gene053132.t1 | AT4G17486 | 55.200 | 125 | 56 | 0 | 28 | 152 | 27 | 151 | 1.90e-54 | 174 |
| MS.gene053132.t1 | AT4G25660 | 33.333 | 174 | 110 | 4 | 49 | 220 | 38 | 207 | 1.64e-22 | 92.8 |
| MS.gene053132.t1 | AT4G25680 | 34.359 | 195 | 112 | 8 | 49 | 234 | 38 | 225 | 5.06e-22 | 91.7 |
| MS.gene053132.t1 | AT3G07090 | 33.846 | 130 | 68 | 5 | 29 | 149 | 8 | 128 | 4.61e-12 | 64.3 |
| MS.gene053132.t1 | AT3G07090 | 33.846 | 130 | 68 | 5 | 29 | 149 | 8 | 128 | 4.61e-12 | 64.3 |
Find 49 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGAAACGGTGTCGTTTC+GGG | 0.198556 | 4.1:-86902789 | MS.gene053132:CDS |
| GGTCTTGGTGTTTATCATTC+TGG | 0.204257 | 4.1:-86902702 | MS.gene053132:CDS |
| AATTCAACGGTTATGCTTAC+TGG | 0.242093 | 4.1:-86902728 | MS.gene053132:CDS |
| CTTGAAACATTAACCTTGTT+TGG | 0.254573 | 4.1:+86898911 | None:intergenic |
| GATGCTTGTGTTAAGCTTAC+TGG | 0.266107 | 4.1:-86901720 | MS.gene053132:CDS |
| TTCACGAAACGGTGTCGTTT+CGG | 0.285864 | 4.1:-86902790 | MS.gene053132:CDS |
| AACGGTTATGCTTACTGGTT+TGG | 0.341414 | 4.1:-86902723 | MS.gene053132:CDS |
| CATGGTGTTGAATATGCATT+TGG | 0.344242 | 4.1:-86901942 | MS.gene053132:CDS |
| AATGTGAAGGGTTCAGATTT+AGG | 0.352563 | 4.1:-86901872 | MS.gene053132:CDS |
| TGGAAATTCTATACCTAGTT+GGG | 0.371552 | 4.1:-86901700 | MS.gene053132:CDS |
| CTGGAAATTCTATACCTAGT+TGG | 0.371967 | 4.1:-86901701 | MS.gene053132:CDS |
| GTTAATCGTCTTGCTAGAAT+TGG | 0.379939 | 4.1:-86901678 | MS.gene053132:intron |
| TATGCTTACTGGTTTGGTCT+TGG | 0.389422 | 4.1:-86902717 | MS.gene053132:CDS |
| TCACCGGCTTCTTCTAGCTC+TGG | 0.400392 | 4.1:-86898866 | MS.gene053132:CDS |
| CTGAACCCTTCACATTTCCT+TGG | 0.401139 | 4.1:+86901879 | None:intergenic |
| TTTAGGAAGACAATAATGAT+TGG | 0.412372 | 4.1:-86901855 | MS.gene053132:CDS |
| GTTTATCATTCTGGTGTTCA+AGG | 0.430967 | 4.1:-86902693 | MS.gene053132:intron |
| ATGGTGTTGAATATGCATTT+GGG | 0.452149 | 4.1:-86901941 | MS.gene053132:CDS |
| TGGTTCTCCTTCAAATATAC+CGG | 0.461685 | 4.1:+86901899 | None:intergenic |
| TTCTAGCTCTGGATTAAGAC+GGG | 0.465458 | 4.1:-86898855 | MS.gene053132:CDS |
| TGTCGTTTCGGGATCGGTGC+CGG | 0.468396 | 4.1:-86902778 | MS.gene053132:CDS |
| GCCGGTGAAGATGCTCTTGA+AGG | 0.484906 | 4.1:+86898881 | None:intergenic |
| AAACGGTGTCGTTTCGGGAT+CGG | 0.502303 | 4.1:-86902784 | MS.gene053132:CDS |
| GCACATGAGTATGCATCAAC+CGG | 0.506681 | 4.1:-86901918 | MS.gene053132:CDS |
| GATTAAGACGGGGAAGGAGC+AGG | 0.510693 | 4.1:-86898844 | MS.gene053132:CDS |
| GCATCAACCGGTATATTTGA+AGG | 0.517962 | 4.1:-86901906 | MS.gene053132:CDS |
| ACCTTCAAGAGCATCTTCAC+CGG | 0.528352 | 4.1:-86898882 | MS.gene053132:CDS |
| TTTGTTGAGTTCAATGTCAC+GGG | 0.532965 | 4.1:+86899013 | None:intergenic |
| TGTGGAAAAGTTTCACGAAA+CGG | 0.553507 | 4.1:-86902801 | MS.gene053132:CDS |
| CTTCTAGCTCTGGATTAAGA+CGG | 0.562003 | 4.1:-86898856 | MS.gene053132:CDS |
| TGGTGAAGTGAGAAGTGTAA+TGG | 0.565751 | 4.1:-86901814 | MS.gene053132:CDS |
| GCAATAATCAAAGGTGAAGG+TGG | 0.569859 | 4.1:+86898809 | None:intergenic |
| CGTCGGAGAATGTTACTATG+TGG | 0.607728 | 4.1:-86902819 | MS.gene053132:CDS |
| TAAACATCAAGATGAAGGGG+AGG | 0.607838 | 4.1:+86898787 | None:intergenic |
| GGAGAACCAAGGAAATGTGA+AGG | 0.613559 | 4.1:-86901885 | MS.gene053132:CDS |
| ATAATCAAAGGTGAAGGTGG+AGG | 0.615233 | 4.1:+86898812 | None:intergenic |
| AATCCAGAGCTAGAAGAAGC+CGG | 0.616375 | 4.1:+86898863 | None:intergenic |
| ATTAACAAGTGAACCAAACA+AGG | 0.618419 | 4.1:-86898924 | MS.gene053132:CDS |
| GAACTTGCTGCTGAGTACAA+AGG | 0.625237 | 4.1:-86901789 | MS.gene053132:CDS |
| GAAGGGGAGGCAATAATCAA+AGG | 0.625643 | 4.1:+86898800 | None:intergenic |
| GCAAGACGATTAACCCAACT+AGG | 0.629110 | 4.1:+86901687 | None:intergenic |
| TGGTGTTGAATATGCATTTG+GGG | 0.634217 | 4.1:-86901940 | MS.gene053132:CDS |
| TACGATCTGACACAATTCAA+CGG | 0.645029 | 4.1:-86902741 | MS.gene053132:CDS |
| GAGGCAATAATCAAAGGTGA+AGG | 0.662473 | 4.1:+86898806 | None:intergenic |
| GAGAACCAAGGAAATGTGAA+GGG | 0.662717 | 4.1:-86901884 | MS.gene053132:CDS |
| TCTAGCTCTGGATTAAGACG+GGG | 0.680990 | 4.1:-86898854 | MS.gene053132:CDS |
| TCGTACACGTTAAGATACAC+CGG | 0.689501 | 4.1:+86902759 | None:intergenic |
| GCTCTGGATTAAGACGGGGA+AGG | 0.690217 | 4.1:-86898850 | MS.gene053132:CDS |
| GTATATTTGAAGGAGAACCA+AGG | 0.721199 | 4.1:-86901896 | MS.gene053132:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTAAAATTAAT+TGG | + | chr4.1:86901786-86901805 | None:intergenic | 0.0% |
| !! | AAAAAATGTATAATAAAAGT+AGG | - | chr4.1:86902461-86902480 | MS.gene053132:intron | 10.0% |
| !! | ATAAATTGAAATAATTAGTT+AGG | - | chr4.1:86900086-86900105 | MS.gene053132:intron | 10.0% |
| !! | TTTATATGCATTTAAATATA+TGG | - | chr4.1:86901363-86901382 | MS.gene053132:intron | 10.0% |
| !! | TTTGTAACAAAAAAAAAAAT+AGG | - | chr4.1:86902431-86902450 | MS.gene053132:intron | 10.0% |
| !!! | ACATTTCTATTTTTATTTTT+TGG | - | chr4.1:86899618-86899637 | MS.gene053132:intron | 10.0% |
| !!! | TATTAATTTTAAAATGCATA+AGG | - | chr4.1:86901258-86901277 | MS.gene053132:intron | 10.0% |
| !!! | TCATAGTTTTTTTTTTTTTA+AGG | - | chr4.1:86900354-86900373 | MS.gene053132:intron | 10.0% |
| !!! | TTTACATTTAATTTAAAGAA+AGG | - | chr4.1:86901221-86901240 | MS.gene053132:intron | 10.0% |
| !! | AAAATTTGAATCAAATACAT+CGG | - | chr4.1:86899282-86899301 | MS.gene053132:intron | 15.0% |
| !! | AGATCTTTGAATTAAAATTT+GGG | + | chr4.1:86901884-86901903 | None:intergenic | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | + | chr4.1:86901593-86901612 | None:intergenic | 15.0% |
| !!! | AAAAGTATTTTACAAGTATT+AGG | + | chr4.1:86901158-86901177 | None:intergenic | 15.0% |
| !!! | ATTCAAAAAAAATTTTTACC+AGG | + | chr4.1:86901565-86901584 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTATTTGTTTCT+TGG | + | chr4.1:86900078-86900097 | None:intergenic | 15.0% |
| !!! | ATTTGTTAAAGACTTTTTTT+AGG | - | chr4.1:86899575-86899594 | MS.gene053132:intron | 15.0% |
| !!! | CAAAAAATGTATTTTTTCTT+GGG | - | chr4.1:86900732-86900751 | MS.gene053132:intron | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | + | chr4.1:86901594-86901613 | None:intergenic | 15.0% |
| !!! | TAATTTTAAAATGCATAAGT+TGG | - | chr4.1:86901261-86901280 | MS.gene053132:intron | 15.0% |
| !!! | TCAAAAAATGTATTTTTTCT+TGG | - | chr4.1:86900731-86900750 | MS.gene053132:intron | 15.0% |
| !!! | TCTATTTTTATTTTTTGGTT+TGG | - | chr4.1:86899623-86899642 | MS.gene053132:intron | 15.0% |
| !!! | TTCAAAAAAAATTTTTACCA+GGG | + | chr4.1:86901564-86901583 | None:intergenic | 15.0% |
| !!! | TTTGTTAAAGACTTTTTTTA+GGG | - | chr4.1:86899576-86899595 | MS.gene053132:intron | 15.0% |
| !!! | TTTTTACTTATATTTAAGAC+CGG | - | chr4.1:86899320-86899339 | MS.gene053132:intron | 15.0% |
| !!! | TTTTTTTTTTTTTCCTGTTT+TGG | - | chr4.1:86900029-86900048 | MS.gene053132:intron | 15.0% |
| !! | AATATCTACGAAACAAAAAT+TGG | - | chr4.1:86900545-86900564 | MS.gene053132:intron | 20.0% |
| !! | AATTAAAAAAAACTGCAGAA+AGG | - | chr4.1:86901795-86901814 | MS.gene053132:CDS | 20.0% |
| !! | ACTTTATTACTTAGATTAGT+AGG | - | chr4.1:86899428-86899447 | MS.gene053132:intron | 20.0% |
| !! | ATTAAAAAAAACTGCAGAAA+GGG | - | chr4.1:86901796-86901815 | MS.gene053132:CDS | 20.0% |
| !! | ATTTCGATTTCTAAATGAAA+TGG | + | chr4.1:86899456-86899475 | None:intergenic | 20.0% |
| !! | CAGATCTTTGAATTAAAATT+TGG | + | chr4.1:86901885-86901904 | None:intergenic | 20.0% |
| !! | CTTTATTACTTAGATTAGTA+GGG | - | chr4.1:86899429-86899448 | MS.gene053132:intron | 20.0% |
| !! | GATCTTTGAATTAAAATTTG+GGG | + | chr4.1:86901883-86901902 | None:intergenic | 20.0% |
| !! | TAAAATAATACAACCAACAA+TGG | + | chr4.1:86900911-86900930 | None:intergenic | 20.0% |
| !! | TTCGGAAAAATTAAGAATTA+AGG | + | chr4.1:86898995-86899014 | None:intergenic | 20.0% |
| !!! | ACAATCTTTTGATAAGTTTT+AGG | - | chr4.1:86900398-86900417 | MS.gene053132:intron | 20.0% |
| !!! | ATTAGGCTAAAATATTCTTT+TGG | - | chr4.1:86901506-86901525 | MS.gene053132:intron | 20.0% |
| !!! | ATTTACATTTGCTATAAATG+TGG | - | chr4.1:86900615-86900634 | MS.gene053132:intron | 20.0% |
| !!! | GACTAAAAACAATTTTTTGT+CGG | - | chr4.1:86899405-86899424 | MS.gene053132:intron | 20.0% |
| !!! | GATCAAGTCAAATTTTTTAT+TGG | - | chr4.1:86900682-86900701 | MS.gene053132:intron | 20.0% |
| !!! | GATTGATATTTGAAATTTTG+AGG | - | chr4.1:86899531-86899550 | MS.gene053132:intron | 20.0% |
| !!! | TAATTTTAAAATGCATAAGG+TGG | - | chr4.1:86902080-86902099 | MS.gene053132:intron | 20.0% |
| !!! | TATTTTGTTTTTTCAGTTCA+TGG | - | chr4.1:86899673-86899692 | MS.gene053132:intron | 20.0% |
| ! | AAAATGTGAATAGATGATGT+GGG | - | chr4.1:86901070-86901089 | MS.gene053132:intron | 25.0% |
| ! | AACATTGCTTATATTATTGC+AGG | - | chr4.1:86902575-86902594 | MS.gene053132:intron | 25.0% |
| ! | AAGCAATGTTTATCTCAATA+AGG | + | chr4.1:86902565-86902584 | None:intergenic | 25.0% |
| ! | AATAATTAGTTAGGTGAAAG+TGG | - | chr4.1:86900095-86900114 | MS.gene053132:intron | 25.0% |
| ! | AATGATTGGAAAAACAGATA+TGG | - | chr4.1:86899792-86899811 | MS.gene053132:intron | 25.0% |
| ! | ATAATTAGTTAGGTGAAAGT+GGG | - | chr4.1:86900096-86900115 | MS.gene053132:intron | 25.0% |
| ! | ATTATAAGTCTTTCACCATT+TGG | - | chr4.1:86900879-86900898 | MS.gene053132:intron | 25.0% |
| ! | GTGTCTTGTACATATAAATT+AGG | - | chr4.1:86901489-86901508 | MS.gene053132:intron | 25.0% |
| ! | TAAATGATATAATTGCCATG+TGG | + | chr4.1:86901706-86901725 | None:intergenic | 25.0% |
| ! | TATACGCAATTAAATGACAT+TGG | - | chr4.1:86901125-86901144 | MS.gene053132:intron | 25.0% |
| ! | TCCCATGTATAAAAAAATGT+GGG | - | chr4.1:86901462-86901481 | MS.gene053132:intron | 25.0% |
| ! | TCTTGTACGTACAAATTATA+TGG | - | chr4.1:86902307-86902326 | MS.gene053132:intron | 25.0% |
| ! | TTAAAAAAAACTGCAGAAAG+GGG | - | chr4.1:86901797-86901816 | MS.gene053132:CDS | 25.0% |
| ! | TTCCCATGTATAAAAAAATG+TGG | - | chr4.1:86901461-86901480 | MS.gene053132:intron | 25.0% |
| ! | TTTACTCAACGTTGAATTTA+CGG | - | chr4.1:86899095-86899114 | MS.gene053132:intron | 25.0% |
| ! | TTTAGGAAGACAATAATGAT+TGG | - | chr4.1:86899778-86899797 | MS.gene053132:intron | 25.0% |
| !! | AATCAAATACATCGGATTTT+TGG | - | chr4.1:86899290-86899309 | MS.gene053132:intron | 25.0% |
| !! | TAATTAGTTTCTGTTTGACT+AGG | - | chr4.1:86900317-86900336 | MS.gene053132:intron | 25.0% |
| !! | TTTGTGAGATTCATTTTCAT+GGG | + | chr4.1:86901953-86901972 | None:intergenic | 25.0% |
| !! | TTTTGTGAGATTCATTTTCA+TGG | + | chr4.1:86901954-86901973 | None:intergenic | 25.0% |
| !!! | AATATAGTGAGTTTGAGTTT+TGG | - | chr4.1:86901537-86901556 | MS.gene053132:intron | 25.0% |
| !!! | ATAAGTTTTAGGCTGAATTT+AGG | - | chr4.1:86900409-86900428 | MS.gene053132:intron | 25.0% |
| !!! | GAGATTATAGTTGATAATGA+TGG | - | chr4.1:86900647-86900666 | MS.gene053132:intron | 25.0% |
| !!! | TAAGTTTTAGGCTGAATTTA+GGG | - | chr4.1:86900410-86900429 | MS.gene053132:intron | 25.0% |
| !!! | TCCCACATTTTTTTATACAT+GGG | + | chr4.1:86901466-86901485 | None:intergenic | 25.0% |
| !!! | TTCCCACATTTTTTTATACA+TGG | + | chr4.1:86901467-86901486 | None:intergenic | 25.0% |
| AAATGAAACACTGAGCAATT+TGG | + | chr4.1:86900186-86900205 | None:intergenic | 30.0% | |
| AAGAGAAGAAAAAACATCGT+CGG | - | chr4.1:86898797-86898816 | MS.gene053132:CDS | 30.0% | |
| AATCAAGATATCATAGTCGT+TGG | + | chr4.1:86900245-86900264 | None:intergenic | 30.0% | |
| ACATATCAACTGCTAAGAAA+TGG | + | chr4.1:86902388-86902407 | None:intergenic | 30.0% | |
| ACATGATCTATATCCAAAAC+AGG | + | chr4.1:86900045-86900064 | None:intergenic | 30.0% | |
| ATTAACAAGTGAACCAAACA+AGG | - | chr4.1:86902709-86902728 | MS.gene053132:CDS | 30.0% | |
| ATTAAGCAAATAGTCTCCAA+TGG | + | chr4.1:86901015-86901034 | None:intergenic | 30.0% | |
| CTTGAAACATTAACCTTGTT+TGG | + | chr4.1:86902725-86902744 | None:intergenic | 30.0% | |
| CTTGATCAAAATCTTCACAA+CGG | + | chr4.1:86900587-86900606 | None:intergenic | 30.0% | |
| GAAAATGTGAATAGATGATG+TGG | - | chr4.1:86901069-86901088 | MS.gene053132:intron | 30.0% | |
| GGAAAAACAGATATGGAAAT+TGG | - | chr4.1:86899799-86899818 | MS.gene053132:intron | 30.0% | |
| GGTGATAGATATCTTAATTC+CGG | + | chr4.1:86902544-86902563 | None:intergenic | 30.0% | |
| TAAAAAAAACTGCAGAAAGG+GGG | - | chr4.1:86901798-86901817 | MS.gene053132:CDS | 30.0% | |
| TAATACAACCAACAATGGAT+TGG | + | chr4.1:86900906-86900925 | None:intergenic | 30.0% | |
| TCAAACTCACTATATTTGCA+GGG | + | chr4.1:86901533-86901552 | None:intergenic | 30.0% | |
| TGACAAATCAGCAAAAAAGT+GGG | + | chr4.1:86901631-86901650 | None:intergenic | 30.0% | |
| TGGAAATTCTATACCTAGTT+GGG | - | chr4.1:86899933-86899952 | MS.gene053132:intron | 30.0% | |
| ! | ATGGTGTTGAATATGCATTT+GGG | - | chr4.1:86899692-86899711 | MS.gene053132:intron | 30.0% |
| ! | ATTAGTCACTTTCACAGATT+TGG | + | chr4.1:86900301-86900320 | None:intergenic | 30.0% |
| ! | GAACTTTTATGCTAAACTTC+CGG | - | chr4.1:86902522-86902541 | MS.gene053132:intron | 30.0% |
| ! | TTTTGTTGAGTTCAATGTCA+CGG | + | chr4.1:86902624-86902643 | None:intergenic | 30.0% |
| !! | TGTTTTGGATATAGATCATG+TGG | - | chr4.1:86900044-86900063 | MS.gene053132:intron | 30.0% |
| !!! | TGTTTTTTAAAATGGTCCCT+GGG | - | chr4.1:86901605-86901624 | MS.gene053132:intron | 30.0% |
| !!! | TTGTTTTTTAAAATGGTCCC+TGG | - | chr4.1:86901604-86901623 | MS.gene053132:intron | 30.0% |
| AACTTTCCTATTCCGAGAAA+AGG | + | chr4.1:86900445-86900464 | None:intergenic | 35.0% | |
| AAGTGAATGCCTTTCTTTAG+TGG | + | chr4.1:86902052-86902071 | None:intergenic | 35.0% | |
| AATCCTTAAACACGTGATCA+GGG | + | chr4.1:86900862-86900881 | None:intergenic | 35.0% | |
| AATGTGAAGGGTTCAGATTT+AGG | - | chr4.1:86899761-86899780 | MS.gene053132:intron | 35.0% | |
| AATTCAACGGTTATGCTTAC+TGG | - | chr4.1:86898905-86898924 | MS.gene053132:CDS | 35.0% | |
| AGCTAGAATTCATCACCATT+TGG | + | chr4.1:86899350-86899369 | None:intergenic | 35.0% | |
| ATCAAAATCCTCAAGACCAT+TGG | - | chr4.1:86900996-86901015 | MS.gene053132:intron | 35.0% | |
| ATCTACAATCTCTAACACAC+AGG | - | chr4.1:86901906-86901925 | MS.gene053132:CDS | 35.0% | |
| ATGATATAATTGCCATGTGG+AGG | + | chr4.1:86901703-86901722 | None:intergenic | 35.0% | |
| CACAAGCATCATTGCAAAAA+TGG | + | chr4.1:86899903-86899922 | None:intergenic | 35.0% | |
| CTCAAACTCACTATATTTGC+AGG | + | chr4.1:86901534-86901553 | None:intergenic | 35.0% | |
| CTGGAAATTCTATACCTAGT+TGG | - | chr4.1:86899932-86899951 | MS.gene053132:intron | 35.0% | |
| GAGTAGTAACAACAACTAGT+AGG | + | chr4.1:86899994-86900013 | None:intergenic | 35.0% | |
| GTATATTTGAAGGAGAACCA+AGG | - | chr4.1:86899737-86899756 | MS.gene053132:intron | 35.0% | |
| GTGACAAATCAGCAAAAAAG+TGG | + | chr4.1:86901632-86901651 | None:intergenic | 35.0% | |
| GTTAATCGTCTTGCTAGAAT+TGG | - | chr4.1:86899955-86899974 | MS.gene053132:intron | 35.0% | |
| GTTTATCATTCTGGTGTTCA+AGG | - | chr4.1:86898940-86898959 | MS.gene053132:CDS | 35.0% | |
| TAATCCTTAAACACGTGATC+AGG | + | chr4.1:86900863-86900882 | None:intergenic | 35.0% | |
| TACGATCTGACACAATTCAA+CGG | - | chr4.1:86898892-86898911 | MS.gene053132:CDS | 35.0% | |
| TCTAGCTAAAGGTGAATCAT+TGG | - | chr4.1:86899363-86899382 | MS.gene053132:intron | 35.0% | |
| TGGTTCTCCTTCAAATATAC+CGG | + | chr4.1:86899737-86899756 | None:intergenic | 35.0% | |
| TGTGGAAAAGTTTCACGAAA+CGG | - | chr4.1:86898832-86898851 | MS.gene053132:CDS | 35.0% | |
| TTCATCACCATTTGGTTATC+CGG | + | chr4.1:86899342-86899361 | None:intergenic | 35.0% | |
| TTTGTTGAGTTCAATGTCAC+GGG | + | chr4.1:86902623-86902642 | None:intergenic | 35.0% | |
| ! | CATGGTGTTGAATATGCATT+TGG | - | chr4.1:86899691-86899710 | MS.gene053132:intron | 35.0% |
| ! | CTTTAGATCTAGGATCTATG+TGG | - | chr4.1:86899019-86899038 | MS.gene053132:CDS | 35.0% |
| ! | GGGATATAAGAACCTTTTCT+CGG | - | chr4.1:86900430-86900449 | MS.gene053132:intron | 35.0% |
| ! | TAAGAACCTTTTCTCGGAAT+AGG | - | chr4.1:86900436-86900455 | MS.gene053132:intron | 35.0% |
| ! | TCCTAGATCTAAAGCAAGTT+CGG | + | chr4.1:86899013-86899032 | None:intergenic | 35.0% |
| ! | TCTCTCTCTTTCTAAAAGTG+TGG | - | chr4.1:86899061-86899080 | MS.gene053132:intron | 35.0% |
| ! | TGCTACACGTTGAATTTGTT+CGG | - | chr4.1:86901034-86901053 | MS.gene053132:intron | 35.0% |
| ! | TGGTGATGAATTCTAGCTAA+AGG | - | chr4.1:86899352-86899371 | MS.gene053132:intron | 35.0% |
| ! | TGGTGTTGAATATGCATTTG+GGG | - | chr4.1:86899693-86899712 | MS.gene053132:intron | 35.0% |
| ! | TTCTTAGCAGTTGATATGTG+TGG | - | chr4.1:86902389-86902408 | MS.gene053132:intron | 35.0% |
| ! | TTTAAGACCGGATAACCAAA+TGG | - | chr4.1:86899332-86899351 | MS.gene053132:intron | 35.0% |
| !! | GGGAGAGTTACTTTAGAATT+AGG | - | chr4.1:86901090-86901109 | MS.gene053132:intron | 35.0% |
| ACATTTGTCATGTGTGACGT+AGG | - | chr4.1:86902345-86902364 | MS.gene053132:intron | 40.0% | |
| ATAATCAAAGGTGAAGGTGG+AGG | + | chr4.1:86902824-86902843 | None:intergenic | 40.0% | |
| ATCCTTAAACACGTGATCAG+GGG | + | chr4.1:86900861-86900880 | None:intergenic | 40.0% | |
| CATTTGGACCAATCCATTGT+TGG | - | chr4.1:86900895-86900914 | MS.gene053132:intron | 40.0% | |
| GAGAACCAAGGAAATGTGAA+GGG | - | chr4.1:86899749-86899768 | MS.gene053132:intron | 40.0% | |
| GAGGCAATAATCAAAGGTGA+AGG | + | chr4.1:86902830-86902849 | None:intergenic | 40.0% | |
| GATGCTTGTGTTAAGCTTAC+TGG | - | chr4.1:86899913-86899932 | MS.gene053132:intron | 40.0% | |
| GATTTGTGAGTGTGCAGATT+TGG | + | chr4.1:86901998-86902017 | None:intergenic | 40.0% | |
| GCAATAATCAAAGGTGAAGG+TGG | + | chr4.1:86902827-86902846 | None:intergenic | 40.0% | |
| GCATCAACCGGTATATTTGA+AGG | - | chr4.1:86899727-86899746 | MS.gene053132:intron | 40.0% | |
| TCGTACACGTTAAGATACAC+CGG | + | chr4.1:86898877-86898896 | None:intergenic | 40.0% | |
| ! | AACGGTTATGCTTACTGGTT+TGG | - | chr4.1:86898910-86898929 | MS.gene053132:CDS | 40.0% |
| ! | AATAGTCTCCAATGGTCTTG+AGG | + | chr4.1:86901007-86901026 | None:intergenic | 40.0% |
| ! | GAGATTCATTTTCATGGGTG+TGG | + | chr4.1:86901948-86901967 | None:intergenic | 40.0% |
| ! | TCCGAACTTGCTTTAGATCT+AGG | - | chr4.1:86899009-86899028 | MS.gene053132:CDS | 40.0% |
| ! | TGGTGAAGTGAGAAGTGTAA+TGG | - | chr4.1:86899819-86899838 | MS.gene053132:intron | 40.0% |
| !! | CAACAATGGATTGGTCCAAA+TGG | + | chr4.1:86900897-86900916 | None:intergenic | 40.0% |
| !! | GGTCTTGGTGTTTATCATTC+TGG | - | chr4.1:86898931-86898950 | MS.gene053132:CDS | 40.0% |
| !! | TATGCTTACTGGTTTGGTCT+TGG | - | chr4.1:86898916-86898935 | MS.gene053132:CDS | 40.0% |
| !! | TTTTCATGGGTGTGGTTTTG+AGG | + | chr4.1:86901940-86901959 | None:intergenic | 40.0% |
| !!! | CTGGGTTTTGGGTTTTGATA+TGG | + | chr4.1:86902027-86902046 | None:intergenic | 40.0% |
| AACCCCTGATCACGTGTTTA+AGG | - | chr4.1:86900856-86900875 | MS.gene053132:intron | 45.0% | |
| AAGTGGGAGCAACATGTAAG+CGG | - | chr4.1:86900112-86900131 | MS.gene053132:intron | 45.0% | |
| AATCCAGAGCTAGAAGAAGC+CGG | + | chr4.1:86902773-86902792 | None:intergenic | 45.0% | |
| ATGCCTTTCTTTAGTGGCAC+TGG | + | chr4.1:86902046-86902065 | None:intergenic | 45.0% | |
| CATAGTCGTTGGATCGAGAT+TGG | + | chr4.1:86900234-86900253 | None:intergenic | 45.0% | |
| CGTCGGAGAATGTTACTATG+TGG | - | chr4.1:86898814-86898833 | MS.gene053132:CDS | 45.0% | |
| CTGAACCCTTCACATTTCCT+TGG | + | chr4.1:86899757-86899776 | None:intergenic | 45.0% | |
| GAAGGGGAGGCAATAATCAA+AGG | + | chr4.1:86902836-86902855 | None:intergenic | 45.0% | |
| GAGCAACATGTAAGCGGTAA+CGG | - | chr4.1:86900118-86900137 | MS.gene053132:intron | 45.0% | |
| GCAAGACGATTAACCCAACT+AGG | + | chr4.1:86899949-86899968 | None:intergenic | 45.0% | |
| GCACATGAGTATGCATCAAC+CGG | - | chr4.1:86899715-86899734 | MS.gene053132:intron | 45.0% | |
| GGAGAACCAAGGAAATGTGA+AGG | - | chr4.1:86899748-86899767 | MS.gene053132:intron | 45.0% | |
| TGCCTTTCTTTAGTGGCACT+GGG | + | chr4.1:86902045-86902064 | None:intergenic | 45.0% | |
| TTGTCACATTTCTGCCTACG+TGG | - | chr4.1:86901645-86901664 | MS.gene053132:intron | 45.0% | |
| ! | AACACGTGATCAGGGGTTTT+TGG | + | chr4.1:86900854-86900873 | None:intergenic | 45.0% |
| ! | AACCCAGTGCCACTAAAGAA+AGG | - | chr4.1:86902040-86902059 | MS.gene053132:intron | 45.0% |
| ! | TGTAAGCGGTAACGGTACAT+CGG | - | chr4.1:86900126-86900145 | MS.gene053132:intron | 45.0% |
| !! | ACCTTCAAGAGCATCTTCAC+CGG | - | chr4.1:86902751-86902770 | MS.gene053132:CDS | 45.0% |
| !! | CTTTAGTGGCACTGGGTTTT+GGG | + | chr4.1:86902038-86902057 | None:intergenic | 45.0% |
| !! | GAACTTGCTGCTGAGTACAA+AGG | - | chr4.1:86899844-86899863 | MS.gene053132:intron | 45.0% |
| !! | TCTTTAGTGGCACTGGGTTT+TGG | + | chr4.1:86902039-86902058 | None:intergenic | 45.0% |
| !! | TGAGTTTGAGTTTTGGTCCC+TGG | - | chr4.1:86901544-86901563 | MS.gene053132:intron | 45.0% |
| !! | TTCACGAAACGGTGTCGTTT+CGG | - | chr4.1:86898843-86898862 | MS.gene053132:CDS | 45.0% |
| !!! | AAATTTTTTGTTTTTTAAAA+TGG | - | chr4.1:86901597-86901616 | MS.gene053132:intron | 5.0% |
| ACGTCTTGCTAACGAGTGTC+TGG | - | chr4.1:86899210-86899229 | MS.gene053132:intron | 50.0% | |
| ATCAGCAAAAAAGTGGGCCC+AGG | + | chr4.1:86901625-86901644 | None:intergenic | 50.0% | |
| ATTGCCATGTGGAGGACATG+TGG | + | chr4.1:86901695-86901714 | None:intergenic | 50.0% | |
| CCACTTGGGTCGAGATTAGA+CGG | - | chr4.1:86900159-86900178 | MS.gene053132:intron | 50.0% | |
| CGTCTAATCTCGACCCAAGT+GGG | + | chr4.1:86900161-86900180 | None:intergenic | 50.0% | |
| CGTCTTGCTAACGAGTGTCT+GGG | - | chr4.1:86899211-86899230 | MS.gene053132:intron | 50.0% | |
| GTCTTGCTAACGAGTGTCTG+GGG | - | chr4.1:86899212-86899231 | MS.gene053132:intron | 50.0% | |
| TCAGCAAAAAAGTGGGCCCA+GGG | + | chr4.1:86901624-86901643 | None:intergenic | 50.0% | |
| TTGCCATGTGGAGGACATGT+GGG | + | chr4.1:86901694-86901713 | None:intergenic | 50.0% | |
| !! | AAACGGTGTCGTTTCGGGAT+CGG | - | chr4.1:86898849-86898868 | MS.gene053132:CDS | 50.0% |
| !! | TCACGAAACGGTGTCGTTTC+GGG | - | chr4.1:86898844-86898863 | MS.gene053132:CDS | 50.0% |
| ACAGTCAGCAACTGCCACGT+AGG | + | chr4.1:86901662-86901681 | None:intergenic | 55.0% | |
| ATCGGAGGTTGTTGCCCACT+TGG | - | chr4.1:86900144-86900163 | MS.gene053132:intron | 55.0% | |
| CCGTCTAATCTCGACCCAAG+TGG | + | chr4.1:86900162-86900181 | None:intergenic | 55.0% | |
| GCCGGTGAAGATGCTCTTGA+AGG | + | chr4.1:86902755-86902774 | None:intergenic | 55.0% | |
| TCGGAGGTTGTTGCCCACTT+GGG | - | chr4.1:86900145-86900164 | MS.gene053132:intron | 55.0% | |
| TTGCCCACATGTCCTCCACA+TGG | - | chr4.1:86901688-86901707 | MS.gene053132:CDS | 55.0% | |
| ! | AAGCGGTAACGGTACATCGG+AGG | - | chr4.1:86900129-86900148 | MS.gene053132:intron | 55.0% |
| !! | TCACCGGCTTCTTCTAGCTC+TGG | - | chr4.1:86902767-86902786 | MS.gene053132:CDS | 55.0% |
| ! | TGTCGTTTCGGGATCGGTGC+CGG | - | chr4.1:86898855-86898874 | MS.gene053132:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 86898793 | 86902862 | 86898793 | ID=MS.gene053132 |
| chr4.1 | mRNA | 86898793 | 86902862 | 86898793 | ID=MS.gene053132.t1;Parent=MS.gene053132 |
| chr4.1 | exon | 86902694 | 86902862 | 86902694 | ID=MS.gene053132.t1.exon1;Parent=MS.gene053132.t1 |
| chr4.1 | CDS | 86902694 | 86902862 | 86902694 | ID=cds.MS.gene053132.t1;Parent=MS.gene053132.t1 |
| chr4.1 | exon | 86901679 | 86901966 | 86901679 | ID=MS.gene053132.t1.exon2;Parent=MS.gene053132.t1 |
| chr4.1 | CDS | 86901679 | 86901966 | 86901679 | ID=cds.MS.gene053132.t1;Parent=MS.gene053132.t1 |
| chr4.1 | exon | 86898793 | 86899058 | 86898793 | ID=MS.gene053132.t1.exon3;Parent=MS.gene053132.t1 |
| chr4.1 | CDS | 86898793 | 86899058 | 86898793 | ID=cds.MS.gene053132.t1;Parent=MS.gene053132.t1 |
| Gene Sequence |
| Protein sequence |
