AlfalfaGEDB | MS.gene050778

M. sativa cultivar XinJiangDaYe / MS.gene050778

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050778.t1	XP_024627194.1	75.6	90	4	3	38	114	1	85	6.80E-26	126.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050778.t1	O80522	70.0	70	20	1	45	114	18	86	1.6e-20	100.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050778.t1	G7KWH3	75.6	90	4	3	38	114	1	85	4.9e-26	126.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050586	MS.gene050778	0.811734	6.04E-51	-1.69E-46
MS.gene050778	MS.gene050807	0.839523	1.51E-57	-1.69E-46
MS.gene050778	MS.gene050808	0.800964	1.13E-48	-1.69E-46
MS.gene050778	MS.gene052665	0.84277	2.11E-58	-1.69E-46
MS.gene050778	MS.gene052732	0.80787	4.09E-50	-1.69E-46
MS.gene050778	MS.gene053437	0.814467	1.52E-51	-1.69E-46
MS.gene050778	MS.gene058982	0.802971	4.35E-49	-1.69E-46
MS.gene050778	MS.gene060480	0.812901	3.36E-51	-1.69E-46
MS.gene050778	MS.gene064944	0.808563	2.91E-50	-1.69E-46
MS.gene050778	MS.gene067029	0.809475	1.86E-50	-1.69E-46
MS.gene050778	MS.gene067071	0.803294	3.73E-49	-1.69E-46
MS.gene050778	MS.gene067234	0.809531	1.81E-50	-1.69E-46
MS.gene050778	MS.gene072115	0.828155	1.05E-54	-1.69E-46
MS.gene050778	MS.gene073884	0.827185	1.80E-54	-1.69E-46
MS.gene050778	MS.gene074123	0.800671	1.29E-48	-1.69E-46
MS.gene050778	MS.gene09400	0.801926	7.15E-49	-1.69E-46
MS.gene050778	MS.gene21089	0.801812	7.55E-49	-1.69E-46
MS.gene050778	MS.gene22854	0.808371	3.20E-50	-1.69E-46
MS.gene050778	MS.gene23105	0.839781	1.29E-57	-1.69E-46
MS.gene050778	MS.gene24268	0.807365	5.24E-50	-1.69E-46
MS.gene050778	MS.gene25229	0.815736	7.93E-52	-1.69E-46
MS.gene050778	MS.gene25810	0.805165	1.52E-49	-1.69E-46
MS.gene050778	MS.gene26972	0.807256	5.52E-50	-1.69E-46
MS.gene050778	MS.gene28298	0.810407	1.17E-50	-1.69E-46
MS.gene050778	MS.gene28650	0.802792	4.74E-49	-1.69E-46
MS.gene050778	MS.gene38293	0.800238	1.58E-48	-1.69E-46
MS.gene050778	MS.gene39586	0.805295	1.43E-49	-1.69E-46
MS.gene050778	MS.gene47516	0.818103	2.33E-52	-1.69E-46
MS.gene050778	MS.gene47955	0.801982	6.96E-49	-1.69E-46
MS.gene050778	MS.gene53586	0.80562	1.22E-49	-1.69E-46
MS.gene050778	MS.gene56555	0.812254	4.65E-51	-1.69E-46
MS.gene050778	MS.gene62682	0.823947	1.05E-53	-1.69E-46
MS.gene050778	MS.gene65276	0.802458	5.56E-49	-1.69E-46
MS.gene050778	MS.gene65430	0.800439	1.44E-48	-1.69E-46
MS.gene050778	MS.gene70730	0.801076	1.07E-48	-1.69E-46
MS.gene050778	MS.gene72707	0.804451	2.15E-49	-1.69E-46
MS.gene050778	MS.gene73391	0.819074	1.41E-52	-1.69E-46
MS.gene050778	MS.gene75538	0.800008	1.76E-48	-1.69E-46
MS.gene050778	MS.gene82491	0.811419	7.07E-51	-1.69E-46
MS.gene050778	MS.gene88334	0.803359	3.62E-49	-1.69E-46
MS.gene050778	MS.gene90787	0.820698	5.98E-53	-1.69E-46
MS.gene050778	MS.gene96564	0.815486	9.02E-52	-1.69E-46
MS.gene050778	MS.gene96810	0.828182	1.04E-54	-1.69E-46
MS.gene050778	MS.gene97761	0.83543	1.69E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050778.t1	MTR_7g111780	74.444	90	5	3	38	114	1	85	3.69e-34	121
MS.gene050778.t1	MTR_1g030262	43.956	91	39	4	27	113	1	83	9.06e-16	67.4
MS.gene050778.t1	MTR_1g030340	54.795	73	29	3	43	113	19	89	9.08e-15	68.9
MS.gene050778.t1	MTR_1g030268	42.045	88	48	3	27	114	4	88	1.60e-14	68.2
MS.gene050778.t1	MTR_8g089805	54.286	70	29	3	45	113	20	87	2.58e-14	67.8
MS.gene050778.t1	MTR_1g030230	49.254	67	33	1	47	113	14	79	3.73e-14	67.4
MS.gene050778.t1	MTR_1g030268	42.529	87	47	3	27	113	4	87	5.60e-14	66.6
MS.gene050778.t1	MTR_1g030275	43.182	88	44	4	27	113	4	86	1.07e-13	65.9
MS.gene050778.t1	MTR_1g082390	50.685	73	33	2	43	113	8	79	1.33e-13	65.9
MS.gene050778.t1	MTR_1g030220	48.000	75	34	2	43	113	14	87	2.01e-13	65.1
MS.gene050778.t1	MTR_7g087190	56.140	57	23	2	57	113	36	90	3.05e-13	64.7
MS.gene050778.t1	MTR_7g033165	47.826	69	34	2	45	113	14	80	6.04e-13	63.9
MS.gene050778.t1	MTR_7g033155	44.304	79	40	2	38	113	8	85	6.20e-13	63.9
MS.gene050778.t1	MTR_7g113860	62.745	51	18	1	63	113	28	77	1.32e-12	62.8
MS.gene050778.t1	MTR_7g033165	47.826	69	34	2	46	114	15	81	1.58e-12	62.4
MS.gene050778.t1	MTR_7g033150	54.386	57	24	2	57	113	28	82	2.07e-12	62.4
MS.gene050778.t1	MTR_6g007090	47.222	72	35	3	43	113	17	86	1.11e-11	60.1
MS.gene050778.t1	MTR_2g015580	43.662	71	36	1	47	113	29	99	1.80e-11	59.7
MS.gene050778.t1	MTR_7g116870	47.436	78	37	3	37	113	6	80	4.03e-11	58.5
MS.gene050778.t1	MTR_7g113860	56.863	51	21	1	63	113	34	83	4.92e-11	58.5
MS.gene050778.t1	MTR_4g104240	48.052	77	32	3	45	113	16	92	7.51e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050778.t1	AT1G09390	68.056	72	22	1	43	114	16	86	2.61e-26	100
MS.gene050778.t1	AT1G56670	63.889	72	25	1	43	114	19	89	1.97e-24	94.4
MS.gene050778.t1	AT1G56670	63.889	72	25	1	43	114	19	89	7.82e-24	94.0
MS.gene050778.t1	AT3G62280	57.377	61	26	0	54	114	25	85	4.05e-19	80.5
MS.gene050778.t1	AT3G62280	57.377	61	26	0	54	114	25	85	1.18e-18	79.7
MS.gene050778.t1	AT3G26430	61.404	57	20	2	57	113	24	78	1.48e-15	71.2
MS.gene050778.t1	AT3G27950	59.016	61	23	2	53	113	21	79	5.21e-15	69.7
MS.gene050778.t1	AT5G14450	50.000	74	30	3	45	113	17	88	8.36e-14	66.2
MS.gene050778.t1	AT1G54790	65.957	47	16	0	67	113	33	79	9.01e-14	66.2
MS.gene050778.t1	AT1G54790	65.957	47	16	0	67	113	33	79	9.20e-14	66.2
MS.gene050778.t1	AT1G54790	47.887	71	33	2	43	113	14	80	3.19e-11	58.9
MS.gene050778.t1	AT1G28650	44.304	79	36	2	43	113	12	90	4.81e-11	58.5
MS.gene050778.t1	AT1G31550	44.706	85	39	3	35	113	7	89	6.74e-11	58.2
MS.gene050778.t1	AT1G31550	44.706	85	39	3	35	113	7	89	6.79e-11	58.2
MS.gene050778.t1	AT1G67830	57.407	54	21	2	60	113	26	77	6.95e-11	58.2

Find 0 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TATCATTCGATACTATGTTC+CGG	-	51782:13606-13625	None:intergenic	30.0%
!	AACATAGTATCGAATGATAC+GGG	+	51782:13607-13626	MS.gene050778:CDS	30.0%
!	GAACATAGTATCGAATGATA+CGG	+	51782:13606-13625	MS.gene050778:CDS	30.0%
	AATGATACGGGCAATAAAGT+AGG	+	51782:13619-13638	MS.gene050778:CDS	35.0%
	AGTGAGTATAACGAAGTAGA+AGG	+	51782:13643-13662	MS.gene050778:CDS	35.0%
	CAAAACTCATACTCAAGTGT+CGG	-	51782:13693-13712	None:intergenic	35.0%
	CCAGCAGTAATATTCATGTT+CGG	+	51782:13778-13797	MS.gene050778:CDS	35.0%
	TAACGAAGTAGAAGGTAGAT+TGG	+	51782:13651-13670	MS.gene050778:CDS	35.0%
!	TCTATGAGTGTTGTTAGTAG+TGG	+	51782:13745-13764	MS.gene050778:CDS	35.0%
!	TGAAAGAAAGTACGACCATT+AGG	-	51782:13862-13881	None:intergenic	35.0%
	AACAGAGAAAGTCGATAACG+AGG	-	51782:13915-13934	None:intergenic	40.0%
	ACTTTCTTTCACAGATCCAC+TGG	+	51782:13871-13890	MS.gene050778:CDS	40.0%
	CCGAACATGAATATTACTGC+TGG	-	51782:13781-13800	None:intergenic	40.0%
	GACCATTAGGAAGATTGACA+GGG	-	51782:13849-13868	None:intergenic	40.0%
	TGGCATTCTCACTTGTTCTA+TGG	+	51782:13719-13738	MS.gene050778:CDS	40.0%
	TTCCCTGTCAATCTTCCTAA+TGG	+	51782:13844-13863	MS.gene050778:CDS	40.0%
!	CGACACTTGAGTATGAGTTT+TGG	+	51782:13691-13710	MS.gene050778:CDS	40.0%
!!	CACTTGAGTATGAGTTTTGG+CGG	+	51782:13694-13713	MS.gene050778:CDS	40.0%
	CGACCATTAGGAAGATTGAC+AGG	-	51782:13850-13869	None:intergenic	45.0%
!	CATGTTCGGTGATTCGAACT+CGG	+	51782:13792-13811	MS.gene050778:CDS	45.0%
	CGGTGATTCGAACTCGGATA+CGG	+	51782:13798-13817	MS.gene050778:CDS	50.0%
	GGTGATTCGAACTCGGATAC+GGG	+	51782:13799-13818	MS.gene050778:CDS	50.0%
	TCCACTGGTCGTTTGTCTGA+TGG	+	51782:13886-13905	MS.gene050778:CDS	50.0%
	TCCATCAGACAAACGACCAG+TGG	-	51782:13890-13909	None:intergenic	50.0%
!!	GAGTATGAGTTTTGGCGGTG+TGG	+	51782:13699-13718	MS.gene050778:CDS	50.0%
	GATTCGAACTCGGATACGGG+TGG	+	51782:13802-13821	MS.gene050778:CDS	55.0%
!	GATACGGGTGGACTCGTTTC+AGG	+	51782:13814-13833	MS.gene050778:CDS	55.0%
!	GGTGGACTCGTTTCAGGACT+CGG	+	51782:13820-13839	MS.gene050778:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
51782	gene	13592	13936	13592	ID=MS.gene050778
51782	mRNA	13592	13936	13592	ID=MS.gene050778.t1;Parent=MS.gene050778
51782	exon	13592	13936	13592	ID=MS.gene050778.t1.exon1;Parent=MS.gene050778.t1
51782	CDS	13592	13936	13592	ID=cds.MS.gene050778.t1;Parent=MS.gene050778.t1

Gene Sequence	>MS.gene050778 ATGAAGAGAATCCGGAACATAGTATCGAATGATACGGGCAATAAAGTAGGCAGTGAGTATAACGAAGTAGAAGGTAGATTGGAAAAAGTGTGTGTATACCGACACTTGAGTATGAGTTTTGGCGGTGTGGCATTCTCACTTGTTCTATGGATATCTATGAGTGTTGTTAGTAGTGGATGCAGTAAACCAGCAGTAATATTCATGTTCGGTGATTCGAACTCGGATACGGGTGGACTCGTTTCAGGACTCGGTTTCCCTGTCAATCTTCCTAATGGTCGTACTTTCTTTCACAGATCCACTGGTCGTTTGTCTGATGGACGCCTCGTTATCGACTTTCTCTGTTAA
Protein sequence	>MS.gene050778.t1 MKRIRNIVSNDTGNKVGSEYNEVEGRLEKVCVYRHLSMSFGGVAFSLVLWISMSVVSSGCSKPAVIFMFGDSNSDTGGLVSGLGFPVNLPNGRTFFHRSTGRLSDGRLVIDFLC