AlfalfaGEDB | MS.gene38444

M. sativa cultivar XinJiangDaYe / MS.gene38444

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38444.t1	KEH34477.1	90.2	133	13	0	1	133	29	161	5.50E-59	236.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38444.t1	Q9FJK3	44.9	127	69	1	1	127	29	154	5.4e-23	108.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38444.t1	A0A072UY35	90.2	133	13	0	1	133	29	161	3.9e-59	236.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene38444.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049262	MS.gene38444	0.810137	1.34E-50	-1.69E-46
MS.gene049541	MS.gene38444	0.820185	7.84E-53	-1.69E-46
MS.gene049853	MS.gene38444	0.832328	1.01E-55	-1.69E-46
MS.gene054484	MS.gene38444	0.810906	9.13E-51	-1.69E-46
MS.gene055017	MS.gene38444	0.816475	5.43E-52	-1.69E-46
MS.gene055952	MS.gene38444	0.801686	8.01E-49	-1.69E-46
MS.gene058580	MS.gene38444	0.821473	3.96E-53	-1.69E-46
MS.gene059276	MS.gene38444	0.8271	1.88E-54	-1.69E-46
MS.gene060610	MS.gene38444	0.834721	2.54E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38444.t1	MTR_3g467080	90.226	133	13	0	1	133	29	161	7.62e-86	248
MS.gene38444.t1	MTR_4g063790	79.699	133	27	0	1	133	29	161	4.31e-73	216
MS.gene38444.t1	MTR_3g465410	78.947	133	28	0	1	133	1	133	1.91e-72	213
MS.gene38444.t1	MTR_3g466980	51.969	127	58	2	1	126	29	153	1.35e-39	132
MS.gene38444.t1	MTR_3g065100	45.968	124	66	1	4	127	32	154	4.09e-33	116
MS.gene38444.t1	MTR_3g031100	43.182	132	75	0	1	132	29	160	9.89e-32	113
MS.gene38444.t1	MTR_3g031240	44.275	131	69	2	1	129	29	157	3.13e-30	107
MS.gene38444.t1	MTR_2g016210	41.667	132	77	0	1	132	29	160	1.35e-29	107
MS.gene38444.t1	MTR_2g035580	45.238	126	68	1	2	127	30	154	2.70e-28	102
MS.gene38444.t1	MTR_2g035610	49.451	91	46	0	4	94	32	122	1.85e-27	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38444.t1	AT5G27810	53.933	89	41	0	1	89	1	89	3.32e-29	103
MS.gene38444.t1	AT5G48670	44.800	125	66	2	4	127	32	154	1.72e-28	106
MS.gene38444.t1	AT1G65300	38.636	132	79	2	2	133	29	158	1.64e-21	87.0
MS.gene38444.t1	AT1G65330	37.705	122	75	1	1	122	28	148	2.35e-19	81.6
MS.gene38444.t1	AT3G05860	53.521	71	33	0	1	71	29	99	8.24e-19	78.6
MS.gene38444.t1	AT3G05860	53.521	71	33	0	1	71	29	99	1.56e-18	79.0
MS.gene38444.t1	AT3G05860	53.521	71	33	0	1	71	29	99	2.09e-18	78.6
MS.gene38444.t1	AT5G26650	43.902	82	46	0	1	82	27	108	3.73e-17	76.3
MS.gene38444.t1	AT5G27960	41.463	82	48	0	1	82	27	108	1.81e-15	71.2
MS.gene38444.t1	AT1G31640	36.364	132	70	4	2	127	29	152	2.26e-15	71.6

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Find 26 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAGGAAACCAGAAAGC+AGG	0.520416	3.4:+63304806	MS.gene38444:CDS
AAGTTTGGCCATCAGATTCA+GGG	0.498747	3.4:+63304661	MS.gene38444:CDS
AATGAAATGATGAATGATAT+TGG	0.442815	3.4:-63304835	None:intergenic
ACAATCCTCAAGTACAAGTT+TGG	0.397151	3.4:+63304646	MS.gene38444:CDS
ACTCTTTGCGGAATAGAAGC+TGG	0.567915	3.4:+63304603	MS.gene38444:CDS
AGTTTGGCCATCAGATTCAG+GGG	0.628974	3.4:+63304662	MS.gene38444:CDS
ATGAGCAGTTGATGAAACAA+AGG	0.608842	3.4:+63304787	MS.gene38444:CDS
ATTCATACCACAGAATTTAA+TGG	0.196701	3.4:+63304855	MS.gene38444:CDS
ATTGGTCATTTCCTGCTTTC+TGG	0.066665	3.4:-63304817	None:intergenic
CAAATTCTCAGCAATAAAAG+AGG	0.520681	3.4:-63304913	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGGAACAAAGTAAAAAGA+TGG	+	chr3.4:63304722-63304741	MS.gene38444:CDS	30.0%
CAAATTCTCAGCAATAAAAG+AGG	-	chr3.4:63304916-63304935	None:intergenic	30.0%
ACAATCCTCAAGTACAAGTT+TGG	+	chr3.4:63304646-63304665	MS.gene38444:CDS	35.0%
GAGGACAAATCATTAAGAAC+AGG	-	chr3.4:63304897-63304916	None:intergenic	35.0%
GATGAAATTAGCACTCTTTG+CGG	+	chr3.4:63304591-63304610	MS.gene38444:CDS	35.0%
GGAACAAAGTAAAAAGATGG+TGG	+	chr3.4:63304725-63304744	MS.gene38444:CDS	35.0%
AAGTTTGGCCATCAGATTCA+GGG	+	chr3.4:63304661-63304680	MS.gene38444:CDS	40.0%
ATTGGTCATTTCCTGCTTTC+TGG	-	chr3.4:63304820-63304839	None:intergenic	40.0%
GAGGTCGATCAAAAGATGAA+AGG	+	chr3.4:63304939-63304958	MS.gene38444:CDS	40.0%
GTATTCTTGAGGCAAAGCAT+TGG	+	chr3.4:63304756-63304775	MS.gene38444:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	63304579	63304980	63304579	ID=MS.gene38444
chr3.4	mRNA	63304579	63304980	63304579	ID=MS.gene38444.t1;Parent=MS.gene38444
chr3.4	exon	63304579	63304980	63304579	ID=MS.gene38444.t1.exon1;Parent=MS.gene38444.t1
chr3.4	CDS	63304579	63304980	63304579	ID=cds.MS.gene38444.t1;Parent=MS.gene38444.t1

Gene Sequence

>MS.gene38444

ATGAAGAAGATTGATGAAATTAGCACTCTTTGCGGAATAGAAGCTGGTGCAATAATTTACGAGCAAAACAATCCTCAAGTACAAGTTTGGCCATCAGATTCAGGGGTTAGAAGTGTGATATCCAGGTTCAGAAGTTTGCCTGGACTGGAACAAAGTAAAAAGATGGTGGATCAAGAGGTATTCTTGAGGCAAAGCATTGGGAAAGTCTATGAGCAGTTGATGAAACAAAGGAAGGAAACCAGAAAGCAGGAAATGACCAATATCATTCATCATTTCATTCATACCACAGAATTTAATGGATATTTAATGAGCAAACCTGTTCTTAATGATTTGTCCTCTTTTATTGCTGAGAATTTGAGGGAGGTCGATCAAAAGATGAAAGGAATGCTAATCGAAGATTGA

Protein sequence

>MS.gene38444.t1

MKKIDEISTLCGIEAGAIIYEQNNPQVQVWPSDSGVRSVISRFRSLPGLEQSKKMVDQEVFLRQSIGKVYEQLMKQRKETRKQEMTNIIHHFIHTTEFNGYLMSKPVLNDLSSFIAENLREVDQKMKGMLIED