Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38566.t1 | XP_003602870.1 | 89.9 | 318 | 18 | 2 | 1 | 305 | 1 | 317 | 3.40E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38566.t1 | Q28IV8 | 31.0 | 310 | 175 | 8 | 12 | 305 | 24 | 310 | 2.0e-24 | 114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38566.t1 | G7J4I5 | 89.9 | 318 | 18 | 2 | 1 | 305 | 1 | 317 | 2.5e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050654 | MS.gene38566 | 0.829624 | 4.64E-55 | -1.69E-46 |
| MS.gene05188 | MS.gene38566 | 0.808037 | 3.77E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene38566 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene38566 | 0.820507 | 6.61E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene38566 | 0.817097 | 3.93E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene38566 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene38566 | 0.820951 | 5.23E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene38566 | 0.81788 | 2.62E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene38566 | 0.808096 | 3.66E-50 | -1.69E-46 |
| MS.gene056638 | MS.gene38566 | 0.810732 | 9.96E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene38566 | 0.81868 | 1.73E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene38566 | 0.813341 | 2.69E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene38566 | 0.804481 | 2.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38566.t1 | MTR_3g099850 | 89.937 | 318 | 18 | 2 | 1 | 305 | 1 | 317 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38566.t1 | AT1G07840 | 48.387 | 310 | 127 | 9 | 15 | 305 | 14 | 309 | 5.24e-85 | 259 |
| MS.gene38566.t1 | AT1G07840 | 48.387 | 310 | 127 | 9 | 15 | 305 | 14 | 309 | 5.24e-85 | 259 |
| MS.gene38566.t1 | AT1G07840 | 49.077 | 271 | 114 | 5 | 15 | 268 | 14 | 277 | 1.69e-79 | 244 |
| MS.gene38566.t1 | AT2G43650 | 41.772 | 79 | 40 | 2 | 19 | 96 | 255 | 328 | 7.04e-12 | 67.0 |
Find 64 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTGATGGAAGAAAATT+TGG | 0.090431 | 3.2:-82889606 | MS.gene38566:CDS |
| AATAATAATGTCACCTCTTC+AGG | 0.247159 | 3.2:+82890978 | None:intergenic |
| CTAACAAGCATGTCAGGATT+TGG | 0.286704 | 3.2:+82891289 | None:intergenic |
| GAAATTTGCCCCTACATCTA+TGG | 0.323324 | 3.2:-82891117 | MS.gene38566:CDS |
| GGCAATAATTCAAAAGCAAC+AGG | 0.349509 | 3.2:+82891629 | None:intergenic |
| AGAAAAGGTGGCAGAAGAAA+TGG | 0.358244 | 3.2:-82890544 | MS.gene38566:CDS |
| GAATAAGTATATTAGCAAAA+TGG | 0.361698 | 3.2:-82890851 | MS.gene38566:CDS |
| GAGCTAGGGACTAACAATTT+CGG | 0.387177 | 3.2:-82889644 | MS.gene38566:CDS |
| CTTTGCAGAGGAAACATTGA+TGG | 0.395802 | 3.2:-82889618 | MS.gene38566:CDS |
| TCAAAATTTCTTTGTCTCTC+CGG | 0.415536 | 3.2:+82891057 | None:intergenic |
| ACATTGATGGAAGAAAATTT+GGG | 0.421009 | 3.2:-82889605 | MS.gene38566:CDS |
| TGCCCCTACATCTATGGATC+TGG | 0.431885 | 3.2:-82891111 | MS.gene38566:CDS |
| ATAGATGTAGGGGCAAATTT+CGG | 0.432254 | 3.2:+82891119 | None:intergenic |
| TACATGAAGAAAGCAACAAA+TGG | 0.436883 | 3.2:-82890754 | MS.gene38566:CDS |
| CAGGTCAATGGTGAATGATA+TGG | 0.438432 | 3.2:-82891009 | MS.gene38566:CDS |
| TTACTTGCTGCGAAAGGCTA+AGG | 0.442757 | 3.2:-82891593 | MS.gene38566:CDS |
| ACTTTGCTAACAAGCATGTC+AGG | 0.446928 | 3.2:+82891283 | None:intergenic |
| TATAATGTTTCAGTTGAGCT+AGG | 0.450744 | 3.2:-82889659 | MS.gene38566:intron |
| TCGTTATTGAAATGATTCTC+AGG | 0.452123 | 3.2:+82891916 | None:intergenic |
| CTCTCCAGTGTCATCTTCAA+AGG | 0.469439 | 3.2:+82890582 | None:intergenic |
| TATTAGCAAAATGGAGGATC+GGG | 0.471917 | 3.2:-82890842 | MS.gene38566:CDS |
| TCTACAATACTTCGAACAAC+AGG | 0.475558 | 3.2:+82891550 | None:intergenic |
| ATTCAAAAGTTTGGAAGCAA+AGG | 0.484902 | 3.2:-82889768 | MS.gene38566:intron |
| GACACTGGAGAGATAACAAC+GGG | 0.484955 | 3.2:-82890571 | MS.gene38566:CDS |
| TTTCCAGATCCATAGATGTA+GGG | 0.489684 | 3.2:+82891108 | None:intergenic |
| TGCATTGTTGAAAGAAATGA+AGG | 0.500645 | 3.2:-82891752 | MS.gene38566:CDS |
| AATCAAGATTCTACAGCAGA+TGG | 0.504788 | 3.2:-82891676 | MS.gene38566:intron |
| AATTTCTTTGTCTCTCCGGC+TGG | 0.507215 | 3.2:+82891061 | None:intergenic |
| GCAAAATGGAGGATCGGGCT+AGG | 0.510188 | 3.2:-82890837 | MS.gene38566:CDS |
| TAGCAGTACAGTCTTGTAGT+AGG | 0.510862 | 3.2:+82889576 | None:intergenic |
| GCAAGTAATAAACAAGGGAT+TGG | 0.513031 | 3.2:+82891608 | None:intergenic |
| ACATGAAGAAAGCAACAAAT+GGG | 0.521633 | 3.2:-82890753 | MS.gene38566:intron |
| TCTCCAGTGTCATCTTCAAA+GGG | 0.524270 | 3.2:+82890583 | None:intergenic |
| ATAATGTTTCAGTTGAGCTA+GGG | 0.524887 | 3.2:-82889658 | MS.gene38566:intron |
| GAAAAGGTGGCAGAAGAAAT+GGG | 0.535559 | 3.2:-82890543 | MS.gene38566:CDS |
| TTCCAGATCCATAGATGTAG+GGG | 0.548710 | 3.2:+82891109 | None:intergenic |
| TGTTTATTACTTGCTGCGAA+AGG | 0.549122 | 3.2:-82891599 | MS.gene38566:CDS |
| ATAACAACGGGATCCAGAAA+AGG | 0.549390 | 3.2:-82890559 | MS.gene38566:CDS |
| ATATTAGCAAAATGGAGGAT+CGG | 0.562884 | 3.2:-82890843 | MS.gene38566:CDS |
| TTCCTCTCTTCTCTAGTGAG+AGG | 0.563874 | 3.2:+82890787 | None:intergenic |
| TACTTGCTGCGAAAGGCTAA+GGG | 0.569441 | 3.2:-82891592 | MS.gene38566:CDS |
| GGATCGGGCTAGGCAAGAGG+AGG | 0.576064 | 3.2:-82890827 | MS.gene38566:CDS |
| GAAAGTGCAACAAGTGATGC+TGG | 0.580076 | 3.2:-82891364 | MS.gene38566:CDS |
| AATAAACTGACCTCAGCAGT+TGG | 0.584967 | 3.2:+82891256 | None:intergenic |
| GGAGGATCGGGCTAGGCAAG+AGG | 0.594916 | 3.2:-82890830 | MS.gene38566:CDS |
| AGCAGGAAAGAAATGCCAGC+CGG | 0.599418 | 3.2:-82891076 | MS.gene38566:CDS |
| CTATAGGATGGTGATGGTGA+TGG | 0.606500 | 3.2:-82891161 | MS.gene38566:intron |
| AACAAGTGATGCTGGTGAGA+AGG | 0.606555 | 3.2:-82891356 | MS.gene38566:CDS |
| TTCGCAGCAAGTAATAAACA+AGG | 0.608584 | 3.2:+82891602 | None:intergenic |
| CTTCTCTAGTGAGAGGAACA+CGG | 0.610902 | 3.2:+82890794 | None:intergenic |
| TTACCCTTTGAAGATGACAC+TGG | 0.611575 | 3.2:-82890586 | MS.gene38566:CDS |
| CAATTTCGGATTCTTTGCAG+AGG | 0.615427 | 3.2:-82889630 | MS.gene38566:CDS |
| TAAGTATATTAGCAAAATGG+AGG | 0.616444 | 3.2:-82890848 | MS.gene38566:CDS |
| TAGGGGCAAATTTCGGAGGA+CGG | 0.617034 | 3.2:+82891126 | None:intergenic |
| TATGGAAGACAGACCTGAAG+AGG | 0.625549 | 3.2:-82890991 | MS.gene38566:intron |
| TGGGAAGTTGAAGAAGCGAA+AGG | 0.631938 | 3.2:-82890524 | MS.gene38566:intron |
| ACAACGGGATCCAGAAAAGG+TGG | 0.643347 | 3.2:-82890556 | MS.gene38566:CDS |
| TTGTTGAAAGAAATGAAGGA+AGG | 0.648804 | 3.2:-82891748 | MS.gene38566:CDS |
| TTCCTCTCACTAGAGAAGAG+AGG | 0.650937 | 3.2:-82890789 | MS.gene38566:CDS |
| TCGCAGCAAGTAATAAACAA+GGG | 0.657491 | 3.2:+82891603 | None:intergenic |
| CAAAGTAGAACCAACTGCTG+AGG | 0.659817 | 3.2:-82891266 | MS.gene38566:intron |
| GATGTAGGGGCAAATTTCGG+AGG | 0.659828 | 3.2:+82891122 | None:intergenic |
| TTTATGCTATAGGATGGTGA+TGG | 0.673940 | 3.2:-82891167 | MS.gene38566:intron |
| TGACACTGGAGAGATAACAA+CGG | 0.690971 | 3.2:-82890572 | MS.gene38566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGAGTTTTATTATATT+AGG | - | chr3.2:82889673-82889692 | MS.gene38566:intron | 10.0% |
| !!! | TGACATTATTATTTTATTTT+TGG | - | chr3.2:82890528-82890547 | MS.gene38566:CDS | 10.0% |
| !! | AATTATTCATAAGCAAAATT+TGG | + | chr3.2:82891478-82891497 | None:intergenic | 15.0% |
| !! | GAAAACAAACAATTAAAAAA+AGG | + | chr3.2:82890821-82890840 | None:intergenic | 15.0% |
| !!! | AATAATTTCAAAGTATCAAA+AGG | + | chr3.2:82891003-82891022 | None:intergenic | 15.0% |
| !!! | ACTTAAATGATTTTATGTAA+TGG | - | chr3.2:82890565-82890584 | MS.gene38566:CDS | 15.0% |
| !!! | ATAATTTCAAAGTATCAAAA+GGG | + | chr3.2:82891002-82891021 | None:intergenic | 15.0% |
| !!! | TTATTATTTTATTTTTGGTG+TGG | - | chr3.2:82890533-82890552 | MS.gene38566:CDS | 15.0% |
| !!! | TTTTATAAAAGCAAATTATC+AGG | + | chr3.2:82890780-82890799 | None:intergenic | 15.0% |
| !! | AATGTACATCATAAAACATT+AGG | + | chr3.2:82891247-82891266 | None:intergenic | 20.0% |
| !! | GAATAAGTATATTAGCAAAA+TGG | - | chr3.2:82890645-82890664 | MS.gene38566:intron | 20.0% |
| !!! | CAGTTTTTAATTCAAAAGTT+TGG | - | chr3.2:82891719-82891738 | MS.gene38566:intron | 20.0% |
| !!! | CTTTAATTAGTTTTTGGATT+TGG | + | chr3.2:82890107-82890126 | None:intergenic | 20.0% |
| !!! | GATACGATTATTTTTAGAAA+AGG | - | chr3.2:82889969-82889988 | MS.gene38566:intron | 20.0% |
| !!! | GTTTTATGATGTACATTTAT+GGG | - | chr3.2:82891250-82891269 | MS.gene38566:intron | 20.0% |
| !!! | TATTGTTGTTTTTTGTCAAT+CGG | + | chr3.2:82890084-82890103 | None:intergenic | 20.0% |
| !!! | TGTTTTATGATGTACATTTA+TGG | - | chr3.2:82891249-82891268 | MS.gene38566:intron | 20.0% |
| !!! | TTTAATTTTATTTCTTGCCA+TGG | + | chr3.2:82891612-82891631 | None:intergenic | 20.0% |
| ! | AACATTGATGGAAGAAAATT+TGG | - | chr3.2:82891890-82891909 | MS.gene38566:intron | 25.0% |
| ! | AATAAAGCAAAATTGCACAT+AGG | + | chr3.2:82891691-82891710 | None:intergenic | 25.0% |
| ! | ACATTGATGGAAGAAAATTT+GGG | - | chr3.2:82891891-82891910 | MS.gene38566:intron | 25.0% |
| ! | CTATACAACATAATCTAAAC+TGG | - | chr3.2:82891575-82891594 | MS.gene38566:CDS | 25.0% |
| ! | TAAGTATATTAGCAAAATGG+AGG | - | chr3.2:82890648-82890667 | MS.gene38566:intron | 25.0% |
| !! | ACACTACATCTTTTAAACAT+TGG | - | chr3.2:82891040-82891059 | MS.gene38566:CDS | 25.0% |
| !! | ATTAAAATCTAAGGTTGTCT+TGG | - | chr3.2:82891324-82891343 | MS.gene38566:CDS | 25.0% |
| !! | CTATTCAATTTTTGTTCACT+TGG | - | chr3.2:82889623-82889642 | MS.gene38566:CDS | 25.0% |
| !! | GATACTAAGACAACAATTTT+AGG | + | chr3.2:82891217-82891236 | None:intergenic | 25.0% |
| !! | TTTAGGTTAAATAGATTCCT+TGG | + | chr3.2:82891200-82891219 | None:intergenic | 25.0% |
| !!! | CACTAGCTTTAATTAGTTTT+TGG | + | chr3.2:82890113-82890132 | None:intergenic | 25.0% |
| !!! | GGCTAATAAATAGTTTTACT+GGG | - | chr3.2:82891345-82891364 | MS.gene38566:CDS | 25.0% |
| !!! | TGGCTAATAAATAGTTTTAC+TGG | - | chr3.2:82891344-82891363 | MS.gene38566:CDS | 25.0% |
| AAAAGGTAACAGGAAATAAC+AGG | + | chr3.2:82891389-82891408 | None:intergenic | 30.0% | |
| AACAGGAAATAACAGGTATT+TGG | + | chr3.2:82891382-82891401 | None:intergenic | 30.0% | |
| AATAATAATGTCACCTCTTC+AGG | + | chr3.2:82890521-82890540 | None:intergenic | 30.0% | |
| AATTCAAACTTTAACTGCCA+AGG | - | chr3.2:82889792-82889811 | MS.gene38566:intron | 30.0% | |
| AATTCGTTTATGCTATAGGA+TGG | - | chr3.2:82890323-82890342 | MS.gene38566:intron | 30.0% | |
| ACATGAAGAAAGCAACAAAT+GGG | - | chr3.2:82890743-82890762 | MS.gene38566:intron | 30.0% | |
| ACCTAATTCGTTTATGCTAT+AGG | - | chr3.2:82890319-82890338 | MS.gene38566:intron | 30.0% | |
| ATAATGTTTCAGTTGAGCTA+GGG | - | chr3.2:82891838-82891857 | MS.gene38566:intron | 30.0% | |
| ATATTAGCAAAATGGAGGAT+CGG | - | chr3.2:82890653-82890672 | MS.gene38566:intron | 30.0% | |
| ATTCAAAAGTTTGGAAGCAA+AGG | - | chr3.2:82891728-82891747 | MS.gene38566:intron | 30.0% | |
| CAAAAGTAGTTGAAAGGAAA+AGG | + | chr3.2:82891777-82891796 | None:intergenic | 30.0% | |
| CATTCATTTCAGTTCAACTT+TGG | - | chr3.2:82891070-82891089 | MS.gene38566:CDS | 30.0% | |
| TACATGAAGAAAGCAACAAA+TGG | - | chr3.2:82890742-82890761 | MS.gene38566:intron | 30.0% | |
| TATAATGTTTCAGTTGAGCT+AGG | - | chr3.2:82891837-82891856 | MS.gene38566:intron | 30.0% | |
| TCAAAATTTCTTTGTCTCTC+CGG | + | chr3.2:82890442-82890461 | None:intergenic | 30.0% | |
| TCCTATAGCATAAACGAATT+AGG | + | chr3.2:82890323-82890342 | None:intergenic | 30.0% | |
| TCGTTATTGAAATGATTCTC+AGG | + | chr3.2:82889583-82889602 | None:intergenic | 30.0% | |
| TGATGAACAATACACTTCAA+AGG | + | chr3.2:82891639-82891658 | None:intergenic | 30.0% | |
| TGCATTGTTGAAAGAAATGA+AGG | - | chr3.2:82889744-82889763 | MS.gene38566:intron | 30.0% | |
| TGGATCCTCATTAAAATCTA+AGG | - | chr3.2:82891315-82891334 | MS.gene38566:CDS | 30.0% | |
| TTGTTGAAAGAAATGAAGGA+AGG | - | chr3.2:82889748-82889767 | MS.gene38566:intron | 30.0% | |
| ! | AAGTGATTTTATCAGGTCAA+TGG | - | chr3.2:82890475-82890494 | MS.gene38566:intron | 30.0% |
| ! | ACATCTGTTTACTATTTTCC+AGG | - | chr3.2:82890845-82890864 | MS.gene38566:CDS | 30.0% |
| ! | ACTCAGATAAGAGATTTTGA+GGG | - | chr3.2:82890607-82890626 | MS.gene38566:CDS | 30.0% |
| ! | AGAATCTTGATTTTTGACCT+TGG | + | chr3.2:82889812-82889831 | None:intergenic | 30.0% |
| ! | CTAAGCAAAGTGATTTTATC+AGG | - | chr3.2:82890468-82890487 | MS.gene38566:intron | 30.0% |
| ! | TACTCAGATAAGAGATTTTG+AGG | - | chr3.2:82890606-82890625 | MS.gene38566:CDS | 30.0% |
| ! | TGAAACATCTTCACTCTTTT+TGG | + | chr3.2:82890178-82890197 | None:intergenic | 30.0% |
| !! | GACAACCTTAGATTTTAATG+AGG | + | chr3.2:82891323-82891342 | None:intergenic | 30.0% |
| !!! | AGCAATGATGTTTTGGTTAT+TGG | - | chr3.2:82891421-82891440 | MS.gene38566:CDS | 30.0% |
| AAGAAAGCAACAAATGGGTA+CGG | - | chr3.2:82890748-82890767 | MS.gene38566:intron | 35.0% | |
| AAGCAAAATTGCACATAGGA+AGG | + | chr3.2:82891687-82891706 | None:intergenic | 35.0% | |
| AATCAAGATTCTACAGCAGA+TGG | - | chr3.2:82889820-82889839 | MS.gene38566:intron | 35.0% | |
| AATTGCACAGAATGACACAA+AGG | + | chr3.2:82891804-82891823 | None:intergenic | 35.0% | |
| ATAGATGTAGGGGCAAATTT+CGG | + | chr3.2:82890380-82890399 | None:intergenic | 35.0% | |
| CTTGTATGTGTGTGTAAACT+TGG | - | chr3.2:82890003-82890022 | MS.gene38566:intron | 35.0% | |
| GCAAGTAATAAACAAGGGAT+TGG | + | chr3.2:82889891-82889910 | None:intergenic | 35.0% | |
| GGATGTCAAAAGTAGTTGAA+AGG | + | chr3.2:82891783-82891802 | None:intergenic | 35.0% | |
| GGCAATAATTCAAAAGCAAC+AGG | + | chr3.2:82889870-82889889 | None:intergenic | 35.0% | |
| TAACAGGTATTTGGCAGATA+TGG | + | chr3.2:82891373-82891392 | None:intergenic | 35.0% | |
| TAATCTGTGTGCATAACTAG+TGG | + | chr3.2:82891511-82891530 | None:intergenic | 35.0% | |
| TATTAGCAAAATGGAGGATC+GGG | - | chr3.2:82890654-82890673 | MS.gene38566:intron | 35.0% | |
| TCAAGTGCAAATTTGTGATG+TGG | - | chr3.2:82890271-82890290 | MS.gene38566:intron | 35.0% | |
| TCATTTCAGTTCAACTTTGG+TGG | - | chr3.2:82891073-82891092 | MS.gene38566:CDS | 35.0% | |
| TCGCAGCAAGTAATAAACAA+GGG | + | chr3.2:82889896-82889915 | None:intergenic | 35.0% | |
| TCTACAATACTTCGAACAAC+AGG | + | chr3.2:82889949-82889968 | None:intergenic | 35.0% | |
| TCTGGAAAAATCTTCAAAGC+AGG | - | chr3.2:82890403-82890422 | MS.gene38566:intron | 35.0% | |
| TTCGCAGCAAGTAATAAACA+AGG | + | chr3.2:82889897-82889916 | None:intergenic | 35.0% | |
| TTTATGCTATAGGATGGTGA+TGG | - | chr3.2:82890329-82890348 | MS.gene38566:intron | 35.0% | |
| TTTCCAGATCCATAGATGTA+GGG | + | chr3.2:82890391-82890410 | None:intergenic | 35.0% | |
| ! | TGTTTATTACTTGCTGCGAA+AGG | - | chr3.2:82889897-82889916 | MS.gene38566:intron | 35.0% |
| ! | TTACTATTTTCCAGGATGCA+AGG | - | chr3.2:82890853-82890872 | MS.gene38566:CDS | 35.0% |
| ! | TTTTCCAGATCCATAGATGT+AGG | + | chr3.2:82890392-82890411 | None:intergenic | 35.0% |
| !! | GATTTTAATGAGGATCCATG+AGG | + | chr3.2:82891313-82891332 | None:intergenic | 35.0% |
| AATAAACTGACCTCAGCAGT+TGG | + | chr3.2:82890243-82890262 | None:intergenic | 40.0% | |
| ACTTTGCTAACAAGCATGTC+AGG | + | chr3.2:82890216-82890235 | None:intergenic | 40.0% | |
| AGAAAAGGTGGCAGAAGAAA+TGG | - | chr3.2:82890952-82890971 | MS.gene38566:intron | 40.0% | |
| AGAAAGCAACAAATGGGTAC+GGG | - | chr3.2:82890749-82890768 | MS.gene38566:intron | 40.0% | |
| ATAACAACGGGATCCAGAAA+AGG | - | chr3.2:82890937-82890956 | MS.gene38566:intron | 40.0% | |
| ATAGATTCCTTGGAAACACC+AGG | + | chr3.2:82891190-82891209 | None:intergenic | 40.0% | |
| ATCCATGAGGTTAGAAAGCT+TGG | + | chr3.2:82891300-82891319 | None:intergenic | 40.0% | |
| CAATTTCGGATTCTTTGCAG+AGG | - | chr3.2:82891866-82891885 | MS.gene38566:intron | 40.0% | |
| CAGGTCAATGGTGAATGATA+TGG | - | chr3.2:82890487-82890506 | MS.gene38566:intron | 40.0% | |
| CTAACAAGCATGTCAGGATT+TGG | + | chr3.2:82890210-82890229 | None:intergenic | 40.0% | |
| CTTTGCAGAGGAAACATTGA+TGG | - | chr3.2:82891878-82891897 | MS.gene38566:intron | 40.0% | |
| GAAAAGGTGGCAGAAGAAAT+GGG | - | chr3.2:82890953-82890972 | MS.gene38566:intron | 40.0% | |
| GAAATTTGCCCCTACATCTA+TGG | - | chr3.2:82890379-82890398 | MS.gene38566:intron | 40.0% | |
| GAGCTAGGGACTAACAATTT+CGG | - | chr3.2:82891852-82891871 | MS.gene38566:intron | 40.0% | |
| TAGATTCCTTGGAAACACCA+GGG | + | chr3.2:82891189-82891208 | None:intergenic | 40.0% | |
| TCCATGAGGTTAGAAAGCTT+GGG | + | chr3.2:82891299-82891318 | None:intergenic | 40.0% | |
| TCTCCAGTGTCATCTTCAAA+GGG | + | chr3.2:82890916-82890935 | None:intergenic | 40.0% | |
| TGACACTGGAGAGATAACAA+CGG | - | chr3.2:82890924-82890943 | MS.gene38566:intron | 40.0% | |
| TTCCAGATCCATAGATGTAG+GGG | + | chr3.2:82890390-82890409 | None:intergenic | 40.0% | |
| ! | ATTTCTTCTGCCACCTTTTC+TGG | + | chr3.2:82890953-82890972 | None:intergenic | 40.0% |
| ! | TAGCAGTACAGTCTTGTAGT+AGG | + | chr3.2:82891923-82891942 | None:intergenic | 40.0% |
| ! | TGGGGTAAGCAATGATGTTT+TGG | - | chr3.2:82891414-82891433 | MS.gene38566:CDS | 40.0% |
| ! | TTACCCTTTGAAGATGACAC+TGG | - | chr3.2:82890910-82890929 | MS.gene38566:intron | 40.0% |
| !! | AACTGGTTTGTAGATGACCA+TGG | - | chr3.2:82891592-82891611 | MS.gene38566:CDS | 40.0% |
| AACAAGTGATGCTGGTGAGA+AGG | - | chr3.2:82890140-82890159 | MS.gene38566:intron | 45.0% | |
| AACATCATTGCTTACCCCAG+AGG | + | chr3.2:82891413-82891432 | None:intergenic | 45.0% | |
| AATTTCTTTGTCTCTCCGGC+TGG | + | chr3.2:82890438-82890457 | None:intergenic | 45.0% | |
| ACCCAAGCTTTCTAACCTCA+TGG | - | chr3.2:82891295-82891314 | MS.gene38566:CDS | 45.0% | |
| CAAAGTAGAACCAACTGCTG+AGG | - | chr3.2:82890230-82890249 | MS.gene38566:intron | 45.0% | |
| CTCAGTTAAACCTTGCATCC+TGG | + | chr3.2:82890866-82890885 | None:intergenic | 45.0% | |
| CTCTCCAGTGTCATCTTCAA+AGG | + | chr3.2:82890917-82890936 | None:intergenic | 45.0% | |
| CTTCTCTAGTGAGAGGAACA+CGG | + | chr3.2:82890705-82890724 | None:intergenic | 45.0% | |
| GAAAGCAACAAATGGGTACG+GGG | - | chr3.2:82890750-82890769 | MS.gene38566:intron | 45.0% | |
| GACACTGGAGAGATAACAAC+GGG | - | chr3.2:82890925-82890944 | MS.gene38566:intron | 45.0% | |
| GGAAAAGGTCACATAGCTTG+AGG | + | chr3.2:82891762-82891781 | None:intergenic | 45.0% | |
| TATGGAAGACAGACCTGAAG+AGG | - | chr3.2:82890505-82890524 | MS.gene38566:intron | 45.0% | |
| TGGGAAGTTGAAGAAGCGAA+AGG | - | chr3.2:82890972-82890991 | MS.gene38566:intron | 45.0% | |
| TTCCTCTCACTAGAGAAGAG+AGG | - | chr3.2:82890707-82890726 | MS.gene38566:intron | 45.0% | |
| TTCCTCTCTTCTCTAGTGAG+AGG | + | chr3.2:82890712-82890731 | None:intergenic | 45.0% | |
| ! | GAAAGTGCAACAAGTGATGC+TGG | - | chr3.2:82890132-82890151 | MS.gene38566:intron | 45.0% |
| ! | TACTTGCTGCGAAAGGCTAA+GGG | - | chr3.2:82889904-82889923 | MS.gene38566:intron | 45.0% |
| ! | TCACTCTTTTTGGATGCAGC+TGG | + | chr3.2:82890168-82890187 | None:intergenic | 45.0% |
| ! | TCCTGTTACCTTTTGCCTCT+GGG | - | chr3.2:82891395-82891414 | MS.gene38566:CDS | 45.0% |
| ! | TGATTTTCTTCTGCTGTCCC+TGG | - | chr3.2:82891169-82891188 | MS.gene38566:intron | 45.0% |
| ! | TTACTTGCTGCGAAAGGCTA+AGG | - | chr3.2:82889903-82889922 | MS.gene38566:intron | 45.0% |
| ! | TTCCTGTTACCTTTTGCCTC+TGG | - | chr3.2:82891394-82891413 | MS.gene38566:CDS | 45.0% |
| !! | CTATAGGATGGTGATGGTGA+TGG | - | chr3.2:82890335-82890354 | MS.gene38566:intron | 45.0% |
| ACAACGGGATCCAGAAAAGG+TGG | - | chr3.2:82890940-82890959 | MS.gene38566:intron | 50.0% | |
| AGCAGGAAAGAAATGCCAGC+CGG | - | chr3.2:82890420-82890439 | MS.gene38566:intron | 50.0% | |
| GATGTAGGGGCAAATTTCGG+AGG | + | chr3.2:82890377-82890396 | None:intergenic | 50.0% | |
| TAGGGGCAAATTTCGGAGGA+CGG | + | chr3.2:82890373-82890392 | None:intergenic | 50.0% | |
| TGCCCCTACATCTATGGATC+TGG | - | chr3.2:82890385-82890404 | MS.gene38566:intron | 50.0% | |
| TTGCTTACCCCAGAGGCAAA+AGG | + | chr3.2:82891406-82891425 | None:intergenic | 50.0% | |
| ! | CCTGTTACCTTTTGCCTCTG+GGG | - | chr3.2:82891396-82891415 | MS.gene38566:CDS | 50.0% |
| CCCCAGAGGCAAAAGGTAAC+AGG | + | chr3.2:82891399-82891418 | None:intergenic | 55.0% | |
| GCAAAATGGAGGATCGGGCT+AGG | - | chr3.2:82890659-82890678 | MS.gene38566:intron | 55.0% | |
| GCAACAAATGGGTACGGGGA+AGG | - | chr3.2:82890754-82890773 | MS.gene38566:CDS | 55.0% | |
| TGCTGTCCCTGGTGTTTCCA+AGG | - | chr3.2:82891180-82891199 | MS.gene38566:intron | 55.0% | |
| ! | GGAGGATCGGGCTAGGCAAG+AGG | - | chr3.2:82890666-82890685 | MS.gene38566:intron | 65.0% |
| ! | GGATCGGGCTAGGCAAGAGG+AGG | - | chr3.2:82890669-82890688 | MS.gene38566:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82889571 | 82891947 | 82889571 | ID=MS.gene38566 |
| chr3.2 | mRNA | 82889571 | 82891947 | 82889571 | ID=MS.gene38566.t1;Parent=MS.gene38566 |
| chr3.2 | exon | 82891901 | 82891947 | 82891901 | ID=MS.gene38566.t1.exon1;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82891901 | 82891947 | 82891901 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82891731 | 82891792 | 82891731 | ID=MS.gene38566.t1.exon2;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82891731 | 82891792 | 82891731 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82891528 | 82891691 | 82891528 | ID=MS.gene38566.t1.exon3;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82891528 | 82891691 | 82891528 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82891267 | 82891443 | 82891267 | ID=MS.gene38566.t1.exon4;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82891267 | 82891443 | 82891267 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82890992 | 82891177 | 82890992 | ID=MS.gene38566.t1.exon5;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82890992 | 82891177 | 82890992 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82890754 | 82890905 | 82890754 | ID=MS.gene38566.t1.exon6;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82890754 | 82890905 | 82890754 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82890525 | 82890651 | 82890525 | ID=MS.gene38566.t1.exon7;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82890525 | 82890651 | 82890525 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82889769 | 82889796 | 82889769 | ID=MS.gene38566.t1.exon8;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82889769 | 82889796 | 82889769 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| chr3.2 | exon | 82889571 | 82889668 | 82889571 | ID=MS.gene38566.t1.exon9;Parent=MS.gene38566.t1 |
| chr3.2 | CDS | 82889571 | 82889668 | 82889571 | ID=cds.MS.gene38566.t1;Parent=MS.gene38566.t1 |
| Gene Sequence |
| Protein sequence |
