Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38758.t1 | XP_003624992.2 | 99.8 | 660 | 1 | 0 | 1 | 660 | 67 | 726 | 0.00E+00 | 1270.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38758.t1 | Q5YLB4 | 82.0 | 660 | 119 | 0 | 1 | 660 | 72 | 731 | 5.0e-311 | 1067.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38758.t1 | G7KQS0 | 99.8 | 660 | 1 | 0 | 1 | 660 | 67 | 726 | 0.0e+00 | 1270.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene38758 | 0.825118 | 5.58E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene38758 | 0.822837 | 1.91E-53 | -1.69E-46 |
| MS.gene050099 | MS.gene38758 | 0.850686 | 1.45E-60 | -1.69E-46 |
| MS.gene050301 | MS.gene38758 | 0.834733 | 2.53E-56 | -1.69E-46 |
| MS.gene051471 | MS.gene38758 | 0.837429 | 5.23E-57 | -1.69E-46 |
| MS.gene051662 | MS.gene38758 | 0.862718 | 4.16E-64 | -1.69E-46 |
| MS.gene051663 | MS.gene38758 | 0.86095 | 1.44E-63 | -1.69E-46 |
| MS.gene052078 | MS.gene38758 | 0.808897 | 2.47E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene38758 | 0.821548 | 3.81E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene38758 | 0.80794 | 3.95E-50 | -1.69E-46 |
| MS.gene053559 | MS.gene38758 | 0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene38758 | 0.83188 | 1.30E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene38758 | 0.800367 | 1.49E-48 | -1.69E-46 |
| MS.gene054942 | MS.gene38758 | 0.831405 | 1.70E-55 | -1.69E-46 |
| MS.gene055133 | MS.gene38758 | 0.803924 | 2.76E-49 | -1.69E-46 |
| MS.gene055390 | MS.gene38758 | 0.842873 | 1.98E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene38758 | 0.862208 | 5.96E-64 | -1.69E-46 |
| MS.gene057121 | MS.gene38758 | 0.810147 | 1.33E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene38758 | 0.813729 | 2.21E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene38758 | 0.823632 | 1.25E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene38758 | 0.829994 | 3.77E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene38758 | 0.831579 | 1.54E-55 | -1.69E-46 |
| MS.gene059518 | MS.gene38758 | 0.812009 | 5.26E-51 | -1.69E-46 |
| MS.gene059708 | MS.gene38758 | 0.828129 | 1.07E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene38758 | 0.813304 | 2.74E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene38758 | 0.809404 | 1.92E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene38758 | 0.814725 | 1.33E-51 | -1.69E-46 |
| MS.gene06090 | MS.gene38758 | 0.819849 | 9.36E-53 | -1.69E-46 |
| MS.gene061113 | MS.gene38758 | 0.813934 | 1.99E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38758.t1 | MTR_7g089790 | 99.848 | 660 | 1 | 0 | 1 | 660 | 67 | 726 | 0.0 | 1361 |
| MS.gene38758.t1 | MTR_3g031040 | 25.000 | 572 | 381 | 20 | 48 | 601 | 68 | 609 | 7.66e-30 | 127 |
| MS.gene38758.t1 | MTR_3g085840 | 24.116 | 622 | 376 | 24 | 25 | 597 | 8 | 582 | 2.65e-28 | 122 |
| MS.gene38758.t1 | MTR_0756s0010 | 26.804 | 291 | 165 | 10 | 290 | 568 | 482 | 736 | 4.56e-17 | 85.9 |
| MS.gene38758.t1 | MTR_1g051315 | 25.714 | 280 | 174 | 9 | 290 | 565 | 241 | 490 | 3.01e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38758.t1 | AT5G04130 | 80.728 | 659 | 127 | 0 | 2 | 660 | 74 | 732 | 0.0 | 1093 |
| MS.gene38758.t1 | AT3G10270 | 81.402 | 656 | 122 | 0 | 5 | 660 | 85 | 740 | 0.0 | 1066 |
| MS.gene38758.t1 | AT3G10270 | 81.402 | 656 | 122 | 0 | 5 | 660 | 75 | 730 | 0.0 | 1065 |
| MS.gene38758.t1 | AT5G04130 | 79.224 | 438 | 91 | 0 | 2 | 439 | 74 | 511 | 0.0 | 708 |
| MS.gene38758.t1 | AT5G04130 | 79.224 | 438 | 91 | 0 | 2 | 439 | 74 | 511 | 0.0 | 708 |
| MS.gene38758.t1 | AT5G04110 | 58.730 | 252 | 94 | 3 | 216 | 464 | 17 | 261 | 4.02e-92 | 296 |
| MS.gene38758.t1 | AT5G04110 | 58.730 | 252 | 93 | 4 | 216 | 464 | 17 | 260 | 6.81e-91 | 291 |
| MS.gene38758.t1 | AT5G04110 | 58.730 | 252 | 93 | 4 | 216 | 464 | 17 | 260 | 1.53e-90 | 292 |
| MS.gene38758.t1 | AT5G04110 | 58.730 | 252 | 93 | 4 | 216 | 464 | 17 | 260 | 1.53e-90 | 292 |
| MS.gene38758.t1 | AT3G23890 | 25.042 | 591 | 379 | 23 | 31 | 597 | 68 | 618 | 5.45e-32 | 133 |
| MS.gene38758.t1 | AT3G23890 | 25.042 | 591 | 379 | 23 | 31 | 597 | 68 | 618 | 6.09e-32 | 133 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCAGGTTTATGAAATTT+TGG | 0.159609 | 7.4:+18962413 | MS.gene38758:intron |
| CAAGACCAAGGATTAAATTT+TGG | 0.168010 | 7.4:-18970290 | None:intergenic |
| AGAATATCTTACCGAGTATT+TGG | 0.173108 | 7.4:+18968489 | MS.gene38758:CDS |
| AAGGAACACGTATCAAATTT+TGG | 0.211413 | 7.4:+18963658 | MS.gene38758:CDS |
| TGTCCTTCAAACTCTGGATT+TGG | 0.228780 | 7.4:-18968287 | None:intergenic |
| TTGCACGCTGGTGGAAAATT+TGG | 0.282779 | 7.4:+18963174 | MS.gene38758:CDS |
| AACAGTGGCTACTCTGTTTC+AGG | 0.289484 | 7.4:+18963204 | MS.gene38758:CDS |
| TCAGTAGCAGAGTTCGAATA+TGG | 0.289875 | 7.4:-18970960 | None:intergenic |
| TTATGGTTCTGATCAAATTC+AGG | 0.299995 | 7.4:+18961716 | MS.gene38758:CDS |
| TTCTTCAATAACCTCTGTTC+TGG | 0.306840 | 7.4:-18971615 | None:intergenic |
| AAGCTTTCATACCATCGATA+TGG | 0.316017 | 7.4:-18967428 | None:intergenic |
| CCCGCGCGGGTTGCATCATT+TGG | 0.316736 | 7.4:+18962308 | MS.gene38758:CDS |
| GTCCTTCAAACTCTGGATTT+GGG | 0.319431 | 7.4:-18968286 | None:intergenic |
| AAGGACAGTTCTAAAGCTTA+TGG | 0.320311 | 7.4:+18961699 | MS.gene38758:CDS |
| AAAAGGCCTGGGATGTATAT+TGG | 0.326533 | 7.4:+18962276 | MS.gene38758:CDS |
| AAAGCAGATTTCTTTGTAGT+TGG | 0.341350 | 7.4:-18963022 | None:intergenic |
| TGCAGGCTATTCTCCCTTTG+AGG | 0.348316 | 7.4:+18970208 | MS.gene38758:intron |
| ACTACTTTACCTTTGGGTTA+AGG | 0.353650 | 7.4:-18963856 | None:intergenic |
| GCATGTTGTATGATGCATTA+GGG | 0.354230 | 7.4:-18971332 | None:intergenic |
| TTTGTCTCATTAGGCAGCTT+TGG | 0.359300 | 7.4:+18968695 | MS.gene38758:intron |
| GACTGGACCCTGTAAGAAAA+AGG | 0.359626 | 7.4:+18962259 | MS.gene38758:CDS |
| TGCATGTTGTATGATGCATT+AGG | 0.366179 | 7.4:-18971333 | None:intergenic |
| CAAAATTTAATCCTTGGTCT+TGG | 0.385483 | 7.4:+18970291 | MS.gene38758:CDS |
| AACAGTATGGCGTGAAGGGC+TGG | 0.389354 | 7.4:+18963554 | MS.gene38758:CDS |
| TTGAGATCTTCATCTCTTCC+TGG | 0.393346 | 7.4:+18968759 | MS.gene38758:CDS |
| TAAAGCTCTGAATGCTTTCA+AGG | 0.394460 | 7.4:+18968546 | MS.gene38758:CDS |
| GCAGGCTATTCTCCCTTTGA+GGG | 0.403577 | 7.4:+18970209 | MS.gene38758:intron |
| GAGATCCAAAATTTAATCCT+TGG | 0.403824 | 7.4:+18970285 | MS.gene38758:CDS |
| TCAACCACTTTCCGCACCTC+TGG | 0.409033 | 7.4:-18968454 | None:intergenic |
| TTTCCTCCCTTATGGGTGCT+CGG | 0.417292 | 7.4:+18971676 | MS.gene38758:CDS |
| TTAATCCTTGGTCTTGGTCT+CGG | 0.420394 | 7.4:+18970297 | MS.gene38758:CDS |
| CAGAGAGCTTTGTTTGATGA+AGG | 0.424517 | 7.4:+18971119 | MS.gene38758:intron |
| TACGATTGCGCTTCGGAAAG+AGG | 0.426290 | 7.4:+18965203 | MS.gene38758:CDS |
| AGCACTGAATCAAGAACATC+TGG | 0.429077 | 7.4:-18968520 | None:intergenic |
| TTTGTTTGTCCTTCAAACTC+TGG | 0.431218 | 7.4:-18968293 | None:intergenic |
| TGTTGCATAAAGACGAGGTT+GGG | 0.433775 | 7.4:+18968427 | MS.gene38758:intron |
| AGGTCGTGATAGGCGCTTCC+AGG | 0.437540 | 7.4:+18969379 | MS.gene38758:CDS |
| CATAGAAATACTCATTAGAT+TGG | 0.437881 | 7.4:-18965245 | None:intergenic |
| CATGATTGATCTTGATCAGC+TGG | 0.439797 | 7.4:+18972058 | MS.gene38758:CDS |
| TCTGTTTCAGGAGGTTTACA+TGG | 0.440691 | 7.4:+18963216 | MS.gene38758:CDS |
| GAACAATCCGCGAGTTTGCC+AGG | 0.442861 | 7.4:-18968777 | None:intergenic |
| AAAATTTGATACGTGTTCCT+TGG | 0.443461 | 7.4:-18963656 | None:intergenic |
| ACACAATAGCTGGACGCATA+AGG | 0.444974 | 7.4:+18963822 | MS.gene38758:CDS |
| TGCTTTAGAGACAGTGTTGA+CGG | 0.445996 | 7.4:+18963039 | MS.gene38758:CDS |
| GCAATTTCTTAACACGGATA+AGG | 0.447284 | 7.4:+18965290 | MS.gene38758:CDS |
| CCATATGAACCTTCTTTGTC+AGG | 0.448685 | 7.4:-18963681 | None:intergenic |
| TCAGGAGGTTTACATGGTGT+TGG | 0.449866 | 7.4:+18963222 | MS.gene38758:CDS |
| TTACTTGTGTAGGTACTTGA+AGG | 0.453872 | 7.4:+18962237 | MS.gene38758:intron |
| TGGTGTTCCACCACTTTACA+AGG | 0.453906 | 7.4:+18971154 | MS.gene38758:CDS |
| AGTTTCAGAAAAGAAATAGA+TGG | 0.459840 | 7.4:+18967017 | MS.gene38758:CDS |
| AAATAATAATCTTGTGATAA+CGG | 0.460897 | 7.4:-18970912 | None:intergenic |
| GTGCTAAGCAAGGTCGTGAT+AGG | 0.462678 | 7.4:+18969369 | MS.gene38758:CDS |
| GGAAAACACAATATTTGCTT+CGG | 0.469868 | 7.4:-18971658 | None:intergenic |
| TTCCTCCCTTATGGGTGCTC+GGG | 0.469917 | 7.4:+18971677 | MS.gene38758:CDS |
| AACATATTCTCGTGGGAAGC+CGG | 0.473111 | 7.4:+18963587 | MS.gene38758:CDS |
| ATTTATATCAGGTGGATGTT+CGG | 0.481417 | 7.4:+18972009 | MS.gene38758:intron |
| TGTAGCTTACGATTGCGCTT+CGG | 0.481540 | 7.4:+18965196 | MS.gene38758:intron |
| ATAGTTGAAGGTGATTCAGC+TGG | 0.482769 | 7.4:+18969341 | MS.gene38758:CDS |
| GGGATGTATATTGGAAGCAC+TGG | 0.484327 | 7.4:+18962285 | MS.gene38758:CDS |
| AGCTTTCATACCATCGATAT+GGG | 0.486541 | 7.4:-18967427 | None:intergenic |
| TTTGAGTACAACACAATAGC+TGG | 0.487175 | 7.4:+18963812 | MS.gene38758:CDS |
| CACAATAGCTGGACGCATAA+GGG | 0.490264 | 7.4:+18963823 | MS.gene38758:CDS |
| ATGTAAAACAACATCAATCT+TGG | 0.490376 | 7.4:-18962472 | None:intergenic |
| ACATTACCCGAGCACCCATA+AGG | 0.493306 | 7.4:-18971683 | None:intergenic |
| AGAGATATACCACAGTCTTC+AGG | 0.498262 | 7.4:-18968810 | None:intergenic |
| TCTAATGAGTATTTCTATGC+CGG | 0.499959 | 7.4:+18965249 | MS.gene38758:CDS |
| AGCATTGCTGACAATGGTCG+CGG | 0.500989 | 7.4:+18962510 | MS.gene38758:CDS |
| GTTGTCTCCCACAGTTGTAA+AGG | 0.501371 | 7.4:-18971585 | None:intergenic |
| AAAGAAATCAAAAGTTATCA+AGG | 0.505346 | 7.4:+18967479 | MS.gene38758:CDS |
| ACTGAAATCGGCAGGTTACA+AGG | 0.507108 | 7.4:+18971247 | MS.gene38758:intron |
| AGCTGAAGATATTCATAAGA+AGG | 0.512986 | 7.4:+18961680 | MS.gene38758:CDS |
| CTAATGAGTATTTCTATGCC+GGG | 0.513781 | 7.4:+18965250 | MS.gene38758:CDS |
| CAGTAGCAGAGTTCGAATAT+GGG | 0.513838 | 7.4:-18970959 | None:intergenic |
| TAACCTCTGTTCTGGATCCA+TGG | 0.515088 | 7.4:-18971607 | None:intergenic |
| GCATACTCCGATACAATACT+AGG | 0.515496 | 7.4:+18967369 | MS.gene38758:CDS |
| TTGCAGATCTTGCACGCTGG+TGG | 0.517780 | 7.4:+18963165 | MS.gene38758:intron |
| TAGTTGAAGGTGATTCAGCT+GGG | 0.520256 | 7.4:+18969342 | MS.gene38758:CDS |
| TTCAGAATCTTACCCCTCAA+AGG | 0.524421 | 7.4:-18970222 | None:intergenic |
| AGCTGGACGCATAAGGGAGT+TGG | 0.528020 | 7.4:+18963829 | MS.gene38758:CDS |
| ATCTCTTCCTGGCAAACTCG+CGG | 0.533566 | 7.4:+18968770 | MS.gene38758:CDS |
| GCTGTTGATGAAGCTCAAGC+TGG | 0.534932 | 7.4:+18962441 | MS.gene38758:CDS |
| TGTGTAGGTACTTGAAGGAC+TGG | 0.535312 | 7.4:+18962242 | MS.gene38758:intron |
| AGAGGACAATGATCCAGAAA+AGG | 0.537761 | 7.4:+18965221 | MS.gene38758:CDS |
| CACGCTGGTGGAAAATTTGG+TGG | 0.538212 | 7.4:+18963177 | MS.gene38758:CDS |
| TACAACATGCAAAGGTTCAA+AGG | 0.538411 | 7.4:+18971345 | MS.gene38758:CDS |
| TGGTCTTGGTCTCGGAGTGA+AGG | 0.539696 | 7.4:+18970305 | MS.gene38758:CDS |
| CACATATTCAGCCAATCCCC+CGG | 0.540054 | 7.4:-18965268 | None:intergenic |
| GAAAAGGATATTACTCTAAG+TGG | 0.544727 | 7.4:+18968218 | MS.gene38758:CDS |
| CATTACCCGAGCACCCATAA+GGG | 0.549853 | 7.4:-18971682 | None:intergenic |
| GTCCCAAATCCAGAGTTTGA+AGG | 0.550348 | 7.4:+18968284 | MS.gene38758:CDS |
| AAATCCAGAGGTGCGGAAAG+TGG | 0.550752 | 7.4:+18968450 | MS.gene38758:CDS |
| AGGCACTAGAGGTAACAGTA+TGG | 0.552404 | 7.4:+18963541 | MS.gene38758:intron |
| TCAGAATCTTACCCCTCAAA+GGG | 0.554307 | 7.4:-18970221 | None:intergenic |
| AGGTAACAGTATGGCGTGAA+GGG | 0.554577 | 7.4:+18963550 | MS.gene38758:CDS |
| AGCATATCCTAGTATTGTAT+CGG | 0.555137 | 7.4:-18967376 | None:intergenic |
| TTGGAAGCACTGGCCCGCGC+GGG | 0.559486 | 7.4:+18962295 | MS.gene38758:CDS |
| GAGGTTATTGAAGAAGTTGA+CGG | 0.561393 | 7.4:+18971623 | MS.gene38758:CDS |
| CCAAATGATGCAACCCGCGC+GGG | 0.564692 | 7.4:-18962308 | None:intergenic |
| AACATGTGTTGTCTCAGTCA+AGG | 0.567792 | 7.4:+18968262 | MS.gene38758:CDS |
| CAGGCTATTCTCCCTTTGAG+GGG | 0.567795 | 7.4:+18970210 | MS.gene38758:intron |
| TCCAACTCCACAGGCACTAG+AGG | 0.567807 | 7.4:+18963530 | MS.gene38758:intron |
| GATTCTGAACATTGAAAGGA+GGG | 0.574792 | 7.4:+18970236 | MS.gene38758:CDS |
| GCATTGCTGACAATGGTCGC+GGG | 0.575570 | 7.4:+18962511 | MS.gene38758:CDS |
| CTGAAATCGGCAGGTTACAA+GGG | 0.576583 | 7.4:+18971248 | MS.gene38758:intron |
| ATATCAGGTGGATGTTCGGA+AGG | 0.578243 | 7.4:+18972013 | MS.gene38758:intron |
| GATGATGCCTTTACAACTGT+GGG | 0.578912 | 7.4:+18971578 | MS.gene38758:CDS |
| GTAAGATTCTGAACATTGAA+AGG | 0.581320 | 7.4:+18970232 | MS.gene38758:CDS |
| TGTTGTTAACGCCTTGTCTG+AGG | 0.583222 | 7.4:+18963251 | MS.gene38758:CDS |
| AGTGGAGAGCATGTGAGAGA+AGG | 0.583912 | 7.4:+18968236 | MS.gene38758:CDS |
| TCAAGGCAAACCTTGTAAAG+TGG | 0.585584 | 7.4:-18971164 | None:intergenic |
| GTTGGCTTTCCTTAACCCAA+AGG | 0.585656 | 7.4:+18963847 | MS.gene38758:CDS |
| GAGGTAACAGTATGGCGTGA+AGG | 0.587049 | 7.4:+18963549 | MS.gene38758:CDS |
| GATGAAGGTTACATATACGT+TGG | 0.588169 | 7.4:+18971134 | MS.gene38758:CDS |
| ATTGGAAGCACTGGCCCGCG+CGG | 0.589460 | 7.4:+18962294 | MS.gene38758:CDS |
| GTAGTTGGATGCATGTCGGT+AGG | 0.591424 | 7.4:-18963007 | None:intergenic |
| TAATGAGTATTTCTATGCCG+GGG | 0.594859 | 7.4:+18965251 | MS.gene38758:CDS |
| TACACACAAACATATTCTCG+TGG | 0.596845 | 7.4:+18963579 | MS.gene38758:CDS |
| ACAAGAACACTAAATAGTCT+CGG | 0.596868 | 7.4:+18967456 | MS.gene38758:CDS |
| ATGCATCATACAACATGCAA+AGG | 0.597009 | 7.4:+18971337 | MS.gene38758:CDS |
| GGCACCATCGACATCAGCAT+CGG | 0.600857 | 7.4:-18970938 | None:intergenic |
| TTGTTGCATAAAGACGAGGT+TGG | 0.601504 | 7.4:+18968426 | MS.gene38758:intron |
| GTGCTTCCAATATACATCCC+AGG | 0.604777 | 7.4:-18962282 | None:intergenic |
| CTTTGTAGTTGGATGCATGT+CGG | 0.606927 | 7.4:-18963011 | None:intergenic |
| TTGACCGATGCTGATGTCGA+TGG | 0.608994 | 7.4:+18970934 | MS.gene38758:CDS |
| AGGCAAACCTTGTAAAGTGG+TGG | 0.609917 | 7.4:-18971161 | None:intergenic |
| ACCATTGTCAGCAATGCTGA+CGG | 0.614856 | 7.4:-18962505 | None:intergenic |
| AATAGTATACGCACTGTCGA+CGG | 0.616506 | 7.4:+18967399 | MS.gene38758:CDS |
| TCCGTCAGCATTGCTGACAA+TGG | 0.616630 | 7.4:+18962504 | MS.gene38758:CDS |
| ACACAGTTCAGAGTTGTCAC+CGG | 0.623220 | 7.4:-18963606 | None:intergenic |
| TGGATGCAGTTCCAAATACT+CGG | 0.624680 | 7.4:-18968500 | None:intergenic |
| ATATGTGCAATTTCTTAACA+CGG | 0.626888 | 7.4:+18965284 | MS.gene38758:CDS |
| AATGAGTATTTCTATGCCGG+GGG | 0.630552 | 7.4:+18965252 | MS.gene38758:CDS |
| AGATTCTGAACATTGAAAGG+AGG | 0.630976 | 7.4:+18970235 | MS.gene38758:CDS |
| GACGGTGGCACCCATATCGA+TGG | 0.634464 | 7.4:+18967417 | MS.gene38758:CDS |
| AGTGGCTACTCTGTTTCAGG+AGG | 0.634936 | 7.4:+18963207 | MS.gene38758:CDS |
| AGTTGAAGGTGATTCAGCTG+GGG | 0.636553 | 7.4:+18969343 | MS.gene38758:CDS |
| AGAGTTTGAAGGACAAACAA+AGG | 0.638297 | 7.4:+18968295 | MS.gene38758:CDS |
| AGATGATGCCTTTACAACTG+TGG | 0.639512 | 7.4:+18971577 | MS.gene38758:CDS |
| ACACACAAACATATTCTCGT+GGG | 0.640066 | 7.4:+18963580 | MS.gene38758:CDS |
| CAGTTGATATAGCTTTGCAA+TGG | 0.641471 | 7.4:+18967045 | MS.gene38758:CDS |
| ACAACTGTGGGAGACAACCA+TGG | 0.641810 | 7.4:+18971590 | MS.gene38758:CDS |
| GTACTCAAATTCAATAGCGG+TGG | 0.644121 | 7.4:-18963798 | None:intergenic |
| ACCAAATGATGCAACCCGCG+CGG | 0.647601 | 7.4:-18962309 | None:intergenic |
| TGAAATCGGCAGGTTACAAG+GGG | 0.647860 | 7.4:+18971249 | MS.gene38758:intron |
| TTCGAAAATAAAGATCGCCA+AGG | 0.647900 | 7.4:+18963639 | MS.gene38758:CDS |
| CATGTTGTATGATGCATTAG+GGG | 0.650685 | 7.4:-18971331 | None:intergenic |
| GTTGTACTCAAATTCAATAG+CGG | 0.652626 | 7.4:-18963801 | None:intergenic |
| AAATTTGGTGGCATCAACAG+TGG | 0.656089 | 7.4:+18963189 | MS.gene38758:CDS |
| ACTTTGCAGATCTTGCACGC+TGG | 0.658529 | 7.4:+18963162 | MS.gene38758:intron |
| GTTGAAGGTGATTCAGCTGG+GGG | 0.658831 | 7.4:+18969344 | MS.gene38758:CDS |
| AGGAAGATGTACCTCAGACA+AGG | 0.662689 | 7.4:-18963262 | None:intergenic |
| GGTTGGGAAATCCAGAGGTG+CGG | 0.666328 | 7.4:+18968443 | MS.gene38758:CDS |
| CATTGCTGACAATGGTCGCG+GGG | 0.666738 | 7.4:+18962512 | MS.gene38758:CDS |
| GACGAGGTTGGGAAATCCAG+AGG | 0.668643 | 7.4:+18968438 | MS.gene38758:intron |
| AGTATACGCACTGTCGACGG+TGG | 0.670255 | 7.4:+18967402 | MS.gene38758:CDS |
| TACCCGAGCACCCATAAGGG+AGG | 0.681093 | 7.4:-18971679 | None:intergenic |
| TCATCAAATCCTGAAGACTG+TGG | 0.689684 | 7.4:+18968801 | MS.gene38758:CDS |
| TCACTCCGAGACCAAGACCA+AGG | 0.700791 | 7.4:-18970302 | None:intergenic |
| CAACCATGGATCCAGAACAG+AGG | 0.750984 | 7.4:+18971604 | MS.gene38758:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 18961663 | 18972088 | 18961663 | ID=MS.gene38758 |
| chr7.4 | mRNA | 18961663 | 18972088 | 18961663 | ID=MS.gene38758.t1;Parent=MS.gene38758 |
| chr7.4 | exon | 18961663 | 18961737 | 18961663 | ID=MS.gene38758.t1.exon1;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18961663 | 18961737 | 18961663 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18962249 | 18962329 | 18962249 | ID=MS.gene38758.t1.exon2;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18962249 | 18962329 | 18962249 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18962420 | 18962533 | 18962420 | ID=MS.gene38758.t1.exon3;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18962420 | 18962533 | 18962420 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18963004 | 18963060 | 18963004 | ID=MS.gene38758.t1.exon4;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18963004 | 18963060 | 18963004 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18963171 | 18963272 | 18963171 | ID=MS.gene38758.t1.exon5;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18963171 | 18963272 | 18963171 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18963543 | 18963693 | 18963543 | ID=MS.gene38758.t1.exon6;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18963543 | 18963693 | 18963543 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18963792 | 18963868 | 18963792 | ID=MS.gene38758.t1.exon7;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18963792 | 18963868 | 18963792 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18965201 | 18965311 | 18965201 | ID=MS.gene38758.t1.exon8;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18965201 | 18965311 | 18965201 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18966996 | 18967066 | 18966996 | ID=MS.gene38758.t1.exon9;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18966996 | 18967066 | 18966996 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18967359 | 18967500 | 18967359 | ID=MS.gene38758.t1.exon10;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18967359 | 18967500 | 18967359 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18968218 | 18968316 | 18968218 | ID=MS.gene38758.t1.exon11;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18968218 | 18968316 | 18968218 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18968439 | 18968567 | 18968439 | ID=MS.gene38758.t1.exon12;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18968439 | 18968567 | 18968439 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18968708 | 18968822 | 18968708 | ID=MS.gene38758.t1.exon13;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18968708 | 18968822 | 18968708 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18969333 | 18969400 | 18969333 | ID=MS.gene38758.t1.exon14;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18969333 | 18969400 | 18969333 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18970213 | 18970326 | 18970213 | ID=MS.gene38758.t1.exon15;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18970213 | 18970326 | 18970213 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18970886 | 18971002 | 18970886 | ID=MS.gene38758.t1.exon16;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18970886 | 18971002 | 18970886 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18971122 | 18971175 | 18971122 | ID=MS.gene38758.t1.exon17;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18971122 | 18971175 | 18971122 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18971261 | 18971366 | 18971261 | ID=MS.gene38758.t1.exon18;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18971261 | 18971366 | 18971261 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18971568 | 18971698 | 18971568 | ID=MS.gene38758.t1.exon19;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18971568 | 18971698 | 18971568 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| chr7.4 | exon | 18972020 | 18972088 | 18972020 | ID=MS.gene38758.t1.exon20;Parent=MS.gene38758.t1 |
| chr7.4 | CDS | 18972020 | 18972088 | 18972020 | ID=cds.MS.gene38758.t1;Parent=MS.gene38758.t1 |
| Gene Sequence |
| Protein sequence |
