Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39214.t1 | KEH41788.1 | 94.4 | 177 | 10 | 0 | 21 | 197 | 1 | 177 | 1.30E-88 | 335.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39214.t1 | Q8L4N1 | 27.6 | 181 | 105 | 5 | 22 | 192 | 44 | 208 | 1.1e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39214.t1 | A0A072VK27 | 94.4 | 177 | 10 | 0 | 21 | 197 | 1 | 177 | 9.2e-89 | 335.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052224 | MS.gene39214 | -0.859432 | 4.15E-63 | -1.69E-46 |
| MS.gene053401 | MS.gene39214 | 0.860676 | 1.75E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017358 | MS.gene39214 | PPI |
| MS.gene26154 | MS.gene39214 | PPI |
| MS.gene010109 | MS.gene39214 | PPI |
| MS.gene063633 | MS.gene39214 | PPI |
| MS.gene009525 | MS.gene39214 | PPI |
| MS.gene050004 | MS.gene39214 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39214.t1 | MTR_1g054765 | 94.350 | 177 | 10 | 0 | 21 | 197 | 1 | 177 | 1.71e-126 | 353 |
| MS.gene39214.t1 | MTR_1g054750 | 79.695 | 197 | 33 | 5 | 1 | 197 | 1 | 190 | 1.87e-107 | 306 |
| MS.gene39214.t1 | MTR_1g083950 | 37.989 | 179 | 88 | 4 | 13 | 191 | 3 | 158 | 5.34e-33 | 116 |
| MS.gene39214.t1 | MTR_1g088640 | 38.251 | 183 | 95 | 4 | 13 | 194 | 2 | 167 | 1.79e-32 | 115 |
| MS.gene39214.t1 | MTR_1g088640 | 38.251 | 183 | 92 | 4 | 13 | 194 | 2 | 164 | 2.86e-32 | 114 |
| MS.gene39214.t1 | MTR_1g087200 | 37.288 | 177 | 88 | 6 | 17 | 190 | 2 | 158 | 1.05e-29 | 107 |
| MS.gene39214.t1 | MTR_5g065980 | 35.882 | 170 | 92 | 6 | 25 | 188 | 10 | 168 | 2.44e-28 | 104 |
| MS.gene39214.t1 | MTR_5g065980 | 36.047 | 172 | 91 | 7 | 25 | 188 | 10 | 170 | 4.12e-27 | 101 |
| MS.gene39214.t1 | MTR_7g108830 | 34.483 | 174 | 95 | 4 | 22 | 194 | 7 | 162 | 5.05e-22 | 88.2 |
| MS.gene39214.t1 | MTR_8g058620 | 34.483 | 174 | 95 | 4 | 22 | 194 | 7 | 162 | 5.05e-22 | 88.2 |
| MS.gene39214.t1 | MTR_4g064933 | 32.530 | 166 | 97 | 3 | 24 | 188 | 6 | 157 | 9.12e-19 | 79.7 |
| MS.gene39214.t1 | MTR_2g089350 | 30.601 | 183 | 94 | 6 | 24 | 194 | 26 | 187 | 9.00e-18 | 78.6 |
| MS.gene39214.t1 | MTR_1g088620 | 50.000 | 62 | 31 | 0 | 133 | 194 | 225 | 286 | 3.87e-16 | 75.1 |
| MS.gene39214.t1 | MTR_2g034200 | 30.460 | 174 | 102 | 4 | 24 | 194 | 6 | 163 | 2.70e-15 | 70.5 |
| MS.gene39214.t1 | MTR_4g019800 | 30.723 | 166 | 94 | 4 | 27 | 188 | 9 | 157 | 5.05e-15 | 69.7 |
| MS.gene39214.t1 | MTR_6g006190 | 31.034 | 87 | 60 | 0 | 102 | 188 | 52 | 138 | 5.47e-15 | 69.3 |
| MS.gene39214.t1 | MTR_6g006190 | 31.034 | 87 | 60 | 0 | 102 | 188 | 76 | 162 | 6.04e-15 | 69.7 |
| MS.gene39214.t1 | MTR_5g077130 | 29.167 | 192 | 85 | 7 | 25 | 197 | 7 | 166 | 7.58e-15 | 69.3 |
| MS.gene39214.t1 | MTR_5g065980 | 31.333 | 150 | 86 | 6 | 25 | 168 | 10 | 148 | 7.85e-15 | 70.1 |
| MS.gene39214.t1 | MTR_5g077130 | 29.688 | 192 | 85 | 7 | 25 | 197 | 7 | 167 | 2.26e-14 | 68.2 |
| MS.gene39214.t1 | MTR_7g065770 | 28.743 | 167 | 102 | 4 | 24 | 188 | 6 | 157 | 2.78e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39214.t1 | AT3G11930 | 56.395 | 172 | 69 | 3 | 24 | 195 | 34 | 199 | 7.92e-67 | 203 |
| MS.gene39214.t1 | AT3G11930 | 56.647 | 173 | 68 | 4 | 24 | 195 | 34 | 200 | 8.55e-66 | 201 |
| MS.gene39214.t1 | AT3G11930 | 56.322 | 174 | 68 | 4 | 24 | 195 | 34 | 201 | 1.29e-65 | 201 |
| MS.gene39214.t1 | AT3G11930 | 49.246 | 199 | 68 | 5 | 24 | 195 | 34 | 226 | 7.63e-60 | 187 |
| MS.gene39214.t1 | AT3G58450 | 51.786 | 168 | 74 | 3 | 25 | 192 | 32 | 192 | 1.23e-53 | 170 |
| MS.gene39214.t1 | AT3G58450 | 50.000 | 168 | 70 | 3 | 25 | 192 | 32 | 185 | 3.05e-51 | 164 |
| MS.gene39214.t1 | AT1G09740 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.58e-30 | 109 |
| MS.gene39214.t1 | AT1G09740 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.58e-30 | 109 |
| MS.gene39214.t1 | AT3G62550 | 35.928 | 167 | 87 | 4 | 24 | 188 | 8 | 156 | 8.61e-28 | 103 |
| MS.gene39214.t1 | AT2G47710 | 33.918 | 171 | 94 | 4 | 22 | 191 | 7 | 159 | 1.79e-27 | 102 |
| MS.gene39214.t1 | AT1G68300 | 33.143 | 175 | 97 | 3 | 15 | 188 | 2 | 157 | 3.95e-24 | 93.6 |
| MS.gene39214.t1 | AT3G01520 | 25.843 | 178 | 97 | 5 | 24 | 188 | 7 | 162 | 3.21e-15 | 70.5 |
| MS.gene39214.t1 | AT5G14680 | 30.612 | 98 | 67 | 1 | 91 | 188 | 66 | 162 | 1.50e-14 | 68.9 |
| MS.gene39214.t1 | AT3G03270 | 32.530 | 166 | 95 | 4 | 25 | 188 | 7 | 157 | 9.92e-14 | 66.2 |
| MS.gene39214.t1 | AT3G53990 | 29.070 | 172 | 95 | 6 | 27 | 191 | 9 | 160 | 2.12e-13 | 65.5 |
| MS.gene39214.t1 | AT3G17020 | 30.058 | 173 | 93 | 5 | 24 | 188 | 8 | 160 | 3.54e-13 | 64.7 |
| MS.gene39214.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.50e-13 | 65.9 |
| MS.gene39214.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.50e-13 | 65.9 |
| MS.gene39214.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.50e-13 | 65.9 |
| MS.gene39214.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.50e-13 | 65.9 |
Find 56 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTATGGCTACTGATACTA+TGG | 0.183037 | 1.2:-43147902 | MS.gene39214:CDS |
| GCAGAAAGTGTGATTCTTAA+TGG | 0.228368 | 1.2:-43146216 | MS.gene39214:CDS |
| TATGCATAAGTGTGGAAATT+TGG | 0.264690 | 1.2:+43147826 | None:intergenic |
| CCAGCTGGTCCCATAGGTAT+AGG | 0.340250 | 1.2:+43147802 | None:intergenic |
| TTCAAAGAATCCCCAACTTC+AGG | 0.340569 | 1.2:+43147421 | None:intergenic |
| ATCCATCAACACCTGAAGTT+GGG | 0.365371 | 1.2:-43147432 | MS.gene39214:CDS |
| AAAAGGGTGATGGAGGAAAT+AGG | 0.378001 | 1.2:-43148054 | None:intergenic |
| TGATAACCTCTTCAACGTTA+TGG | 0.381044 | 1.2:-43147917 | MS.gene39214:CDS |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1.2:-43146154 | MS.gene39214:CDS |
| CAGCTGGTCCCATAGGTATA+GGG | 0.428625 | 1.2:+43147803 | None:intergenic |
| ATCATGGGTAGTCGTGGCCT+TGG | 0.451807 | 1.2:-43146138 | MS.gene39214:CDS |
| TCCCCAACTTCAGGTGTTGA+TGG | 0.458443 | 1.2:+43147430 | None:intergenic |
| TATCCATCAACACCTGAAGT+TGG | 0.466557 | 1.2:-43147433 | MS.gene39214:CDS |
| CCTATGGGACCAGCTGGTAT+TGG | 0.470932 | 1.2:-43147796 | MS.gene39214:intron |
| TTATGCATACCCTATACCTA+TGG | 0.478213 | 1.2:-43147812 | MS.gene39214:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1.2:-43147380 | MS.gene39214:CDS |
| TGCAAGAGAAATGATTAGTC+AGG | 0.497260 | 1.2:-43146190 | MS.gene39214:CDS |
| GAAGCTTGTATGCTCTTAAG+TGG | 0.498753 | 1.2:-43147945 | MS.gene39214:CDS |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.501962 | 1.2:-43146125 | MS.gene39214:intron |
| TTTGGTGGCAGAGCCTTCCT+TGG | 0.503463 | 1.2:-43145997 | MS.gene39214:intron |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1.2:-43147353 | MS.gene39214:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1.2:+43145937 | None:intergenic |
| TGGAAGTGTTGATCAAGTGA+GGG | 0.512230 | 1.2:-43148031 | MS.gene39214:CDS |
| CCAATACCAGCTGGTCCCAT+AGG | 0.522576 | 1.2:+43147796 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1.2:-43147995 | MS.gene39214:CDS |
| TAACGTTGAAGAGGTTATCA+AGG | 0.523668 | 1.2:+43147920 | None:intergenic |
| ATCTGAAAATGAGGAGGGGA+TGG | 0.523730 | 1.2:-43147869 | MS.gene39214:CDS |
| TCCATCAACACCTGAAGTTG+GGG | 0.531250 | 1.2:-43147431 | MS.gene39214:CDS |
| CTCTTAATCATGGGTAGTCG+TGG | 0.541714 | 1.2:-43146144 | MS.gene39214:CDS |
| AATAGTCACTTACACTTCCA+AGG | 0.548894 | 1.2:+43145980 | None:intergenic |
| TGGAACAACATCTGAAAATG+AGG | 0.557443 | 1.2:-43147878 | MS.gene39214:CDS |
| ATGGCTACTGATACTATGGA+TGG | 0.557940 | 1.2:-43147898 | MS.gene39214:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1.2:-43146153 | MS.gene39214:CDS |
| GTGGAAGTGTTGATCAAGTG+AGG | 0.562018 | 1.2:-43148032 | MS.gene39214:CDS |
| GTCACTTACACTTCCAAGGA+AGG | 0.566492 | 1.2:+43145984 | None:intergenic |
| CAGTAGCCATAACGTTGAAG+AGG | 0.571035 | 1.2:+43147911 | None:intergenic |
| CCTATACCTATGGGACCAGC+TGG | 0.573743 | 1.2:-43147802 | MS.gene39214:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1.2:-43148008 | MS.gene39214:CDS |
| TATGCATACCCTATACCTAT+GGG | 0.588273 | 1.2:-43147811 | MS.gene39214:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1.2:-43147381 | MS.gene39214:CDS |
| GTATAGGGTATGCATAAGTG+TGG | 0.596401 | 1.2:+43147818 | None:intergenic |
| ACGGGCTTTGCAAATGTGCA+AGG | 0.605600 | 1.2:-43147362 | MS.gene39214:CDS |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1.2:-43147986 | MS.gene39214:CDS |
| ATATACTAACCAATACCAGC+TGG | 0.608648 | 1.2:+43147787 | None:intergenic |
| GGAAGTGTTGATCAAGTGAG+GGG | 0.617330 | 1.2:-43148030 | MS.gene39214:CDS |
| ACAACATCTGAAAATGAGGA+GGG | 0.619877 | 1.2:-43147874 | MS.gene39214:CDS |
| AACAACATCTGAAAATGAGG+AGG | 0.624375 | 1.2:-43147875 | MS.gene39214:CDS |
| AACGTTGAAGAGGTTATCAA+GGG | 0.625008 | 1.2:+43147921 | None:intergenic |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1.2:-43147989 | MS.gene39214:CDS |
| AAGCTTGTATGCTCTTAAGT+GGG | 0.653871 | 1.2:-43147944 | MS.gene39214:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1.2:-43147967 | MS.gene39214:CDS |
| CAACATCTGAAAATGAGGAG+GGG | 0.662503 | 1.2:-43147873 | MS.gene39214:CDS |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1.2:+43147366 | None:intergenic |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1.2:-43145932 | MS.gene39214:CDS |
| AGGGTGATGGAGGAAATAGG+TGG | 0.693358 | 1.2:-43148051 | None:intergenic |
| AGTGTTGATCAAGTGAGGGG+AGG | 0.733239 | 1.2:-43148027 | MS.gene39214:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGTAAATATTAAATAAATTT+AGG | + | chr1.2:43147578-43147597 | None:intergenic | 10.0% |
| !! | GTTAATATAAAATATACAAT+TGG | + | chr1.2:43147420-43147439 | None:intergenic | 10.0% |
| !! | AACTAAAATAATTTCTTTGA+CGG | - | chr1.2:43147271-43147290 | MS.gene39214:intron | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1.2:43146985-43147004 | None:intergenic | 15.0% |
| !! | GAATAATGACATTAATTAAT+AGG | + | chr1.2:43147002-43147021 | None:intergenic | 15.0% |
| !! | TAATAGGATAAATTAAATGA+AGG | + | chr1.2:43146986-43147005 | None:intergenic | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1.2:43147942-43147961 | MS.gene39214:CDS | 15.0% |
| !!! | TAAATTATGGCTTTTAAATT+TGG | - | chr1.2:43147653-43147672 | MS.gene39214:intron | 15.0% |
| !!! | TGTTTTTATTTTTAGTATAG+AGG | + | chr1.2:43146929-43146948 | None:intergenic | 15.0% |
| !!! | TTAATATTGTCTATTTTTCT+TGG | - | chr1.2:43146294-43146313 | MS.gene39214:intron | 15.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1.2:43146263-43146282 | MS.gene39214:intron | 20.0% |
| !! | GAATTAGACATGTAAAAAAA+AGG | + | chr1.2:43146230-43146249 | None:intergenic | 20.0% |
| !! | TTCATGATAAACAGAAAATA+GGG | - | chr1.2:43146839-43146858 | MS.gene39214:intron | 20.0% |
| !! | TTGTAACCAAAAAAAATGAA+GGG | + | chr1.2:43146957-43146976 | None:intergenic | 20.0% |
| !! | TTTCATGATAAACAGAAAAT+AGG | - | chr1.2:43146838-43146857 | MS.gene39214:intron | 20.0% |
| !! | TTTGTAACCAAAAAAAATGA+AGG | + | chr1.2:43146958-43146977 | None:intergenic | 20.0% |
| !!! | AAAATACCCTTCATTTTTTT+TGG | - | chr1.2:43146948-43146967 | MS.gene39214:intron | 20.0% |
| !!! | AAAGGAAGATTATTTTTTGA+AGG | + | chr1.2:43146900-43146919 | None:intergenic | 20.0% |
| !!! | AGTTAATTGTCACTTATATT+AGG | + | chr1.2:43146724-43146743 | None:intergenic | 20.0% |
| !!! | ATTTTGATTTCATTTATGCA+TGG | - | chr1.2:43147913-43147932 | MS.gene39214:CDS | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1.2:43147945-43147964 | MS.gene39214:CDS | 20.0% |
| !!! | GTGATGATGTTTTAAAAATT+CGG | - | chr1.2:43147619-43147638 | MS.gene39214:intron | 20.0% |
| !!! | GTTAATTGTCACTTATATTA+GGG | + | chr1.2:43146723-43146742 | None:intergenic | 20.0% |
| ! | GTAATATTGCATATGTTAGA+CGG | - | chr1.2:43147517-43147536 | MS.gene39214:intron | 25.0% |
| ! | TCATGATAAACAGAAAATAG+GGG | - | chr1.2:43146840-43146859 | MS.gene39214:intron | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1.2:43147162-43147181 | None:intergenic | 25.0% |
| !! | AGGGAATGAACAATTTTAAA+AGG | + | chr1.2:43146704-43146723 | None:intergenic | 25.0% |
| !!! | GAAGATTATTTTTTGAAGGA+AGG | + | chr1.2:43146896-43146915 | None:intergenic | 25.0% |
| !!! | GGGAATGAACAATTTTAAAA+GGG | + | chr1.2:43146703-43146722 | None:intergenic | 25.0% |
| AACTTACACAAGTGTATTCT+CGG | + | chr1.2:43146405-43146424 | None:intergenic | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1.2:43147703-43147722 | None:intergenic | 30.0% | |
| CATGATAAACAGAAAATAGG+GGG | - | chr1.2:43146841-43146860 | MS.gene39214:intron | 30.0% | |
| GGTAGAAGCTACATAAATTA+TGG | - | chr1.2:43147640-43147659 | MS.gene39214:intron | 30.0% | |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1.2:43146134-43146153 | None:intergenic | 30.0% | |
| TCATTGATGCATACTTTCAT+TGG | + | chr1.2:43147709-43147728 | None:intergenic | 30.0% | |
| TTAGTATAGAGGAAAGTGAA+AGG | + | chr1.2:43146918-43146937 | None:intergenic | 30.0% | |
| TTCCCATTCCTTTATATCAA+CGG | + | chr1.2:43146784-43146803 | None:intergenic | 30.0% | |
| TTTCATTTATGCATGGTTGA+TGG | - | chr1.2:43147920-43147939 | MS.gene39214:CDS | 30.0% | |
| ! | ACGGAAGTGTATTAAATCTA+TGG | - | chr1.2:43147290-43147309 | MS.gene39214:intron | 30.0% |
| ! | CAAAGTATCACACAAGAAAA+AGG | + | chr1.2:43146487-43146506 | None:intergenic | 30.0% |
| ! | CGGAAGTGTATTAAATCTAT+GGG | - | chr1.2:43147291-43147310 | MS.gene39214:intron | 30.0% |
| !! | AAAGGAAGATGATTGCTTTT+TGG | + | chr1.2:43146867-43146886 | None:intergenic | 30.0% |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1.2:43147804-43147823 | MS.gene39214:CDS | 30.0% |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1.2:43145962-43145981 | MS.gene39214:CDS | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1.2:43146082-43146101 | MS.gene39214:intron | 35.0% | |
| AACGTTGAAGAGGTTATCAA+GGG | + | chr1.2:43146039-43146058 | None:intergenic | 35.0% | |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1.2:43146013-43146032 | MS.gene39214:intron | 35.0% | |
| AAGTATGCATCAATGAAAGC+AGG | - | chr1.2:43147713-43147732 | MS.gene39214:intron | 35.0% | |
| AATAGTCACTTACACTTCCA+AGG | + | chr1.2:43147980-43147999 | None:intergenic | 35.0% | |
| ACAAACATTATTCTCTCGTC+AGG | - | chr1.2:43147068-43147087 | MS.gene39214:intron | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1.2:43146083-43146102 | MS.gene39214:intron | 35.0% | |
| AGGAAGTAAGCAAAGAAAGT+TGG | + | chr1.2:43146210-43146229 | None:intergenic | 35.0% | |
| AGTTACTGCCGTTGATATAA+AGG | - | chr1.2:43146773-43146792 | MS.gene39214:intron | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1.2:43146173-43146192 | None:intergenic | 35.0% | |
| ATGGATAAACAGCTGTTGAA+AGG | + | chr1.2:43146511-43146530 | None:intergenic | 35.0% | |
| CGTCAGGTTAGTAAAATCAA+CGG | - | chr1.2:43147084-43147103 | MS.gene39214:intron | 35.0% | |
| GCAGAAATGAGAAAATCAGA+TGG | + | chr1.2:43146351-43146370 | None:intergenic | 35.0% | |
| GGGAATGAGCAAAAATAGAT+GGG | - | chr1.2:43146448-43146467 | MS.gene39214:intron | 35.0% | |
| TAACGTTGAAGAGGTTATCA+AGG | + | chr1.2:43146040-43146059 | None:intergenic | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1.2:43146146-43146165 | MS.gene39214:CDS | 35.0% | |
| TGATAACCTCTTCAACGTTA+TGG | - | chr1.2:43146040-43146059 | MS.gene39214:intron | 35.0% | |
| TGCCGTTGATATAAAGGAAT+GGG | - | chr1.2:43146779-43146798 | MS.gene39214:intron | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1.2:43146079-43146098 | MS.gene39214:intron | 35.0% | |
| TGTGTAAGTTAATTCACGCT+CGG | - | chr1.2:43146415-43146434 | MS.gene39214:intron | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1.2:43146145-43146164 | MS.gene39214:CDS | 35.0% | |
| TTCTCGGTATGATTTAACTC+AGG | + | chr1.2:43146389-43146408 | None:intergenic | 35.0% | |
| TTTGAAGGAAGGAAAGTGAA+AGG | + | chr1.2:43146885-43146904 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1.2:43147741-43147760 | MS.gene39214:intron | 35.0% |
| ! | TGCAAGAGAAATGATTAGTC+AGG | - | chr1.2:43147767-43147786 | MS.gene39214:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1.2:43147803-43147822 | MS.gene39214:CDS | 35.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1.2:43145968-43145987 | MS.gene39214:CDS | 40.0% | |
| ATCCATCAACACCTGAAGTT+GGG | - | chr1.2:43146525-43146544 | MS.gene39214:intron | 40.0% | |
| ATGGCTACTGATACTATGGA+TGG | - | chr1.2:43146059-43146078 | MS.gene39214:intron | 40.0% | |
| CAACATCTGAAAATGAGGAG+GGG | - | chr1.2:43146084-43146103 | MS.gene39214:intron | 40.0% | |
| CAGATGGAAGAAGAGCAATT+TGG | + | chr1.2:43146335-43146354 | None:intergenic | 40.0% | |
| CGGGAATGAGCAAAAATAGA+TGG | - | chr1.2:43146447-43146466 | MS.gene39214:intron | 40.0% | |
| CGTTATGGCTACTGATACTA+TGG | - | chr1.2:43146055-43146074 | MS.gene39214:intron | 40.0% | |
| CTGCCGTTGATATAAAGGAA+TGG | - | chr1.2:43146778-43146797 | MS.gene39214:intron | 40.0% | |
| GAAATGAGTCTCGCTTTACA+AGG | + | chr1.2:43147219-43147238 | None:intergenic | 40.0% | |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1.2:43146012-43146031 | MS.gene39214:intron | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1.2:43146142-43146161 | None:intergenic | 40.0% | |
| TATCCATCAACACCTGAAGT+TGG | - | chr1.2:43146524-43146543 | MS.gene39214:intron | 40.0% | |
| TTCAAAGAATCCCCAACTTC+AGG | + | chr1.2:43146539-43146558 | None:intergenic | 40.0% | |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1.2:43146567-43146586 | None:intergenic | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1.2:43146568-43146587 | None:intergenic | 40.0% |
| ! | TTTTTACGGAACTTCCGTCA+AGG | + | chr1.2:43147241-43147260 | None:intergenic | 40.0% |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1.2:43145926-43145945 | MS.gene39214:CDS | 40.0% |
| !!! | CTTACCTTTTGAGTTTGCCA+AGG | + | chr1.2:43147839-43147858 | None:intergenic | 40.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1.2:43146576-43146595 | MS.gene39214:intron | 45.0% | |
| AGCGAGACTCATTTCCTTGA+CGG | - | chr1.2:43147224-43147243 | MS.gene39214:intron | 45.0% | |
| ATCTGAAAATGAGGAGGGGA+TGG | - | chr1.2:43146088-43146107 | MS.gene39214:intron | 45.0% | |
| CAGTAGCCATAACGTTGAAG+AGG | + | chr1.2:43146049-43146068 | None:intergenic | 45.0% | |
| CTCTTAATCATGGGTAGTCG+TGG | - | chr1.2:43147813-43147832 | MS.gene39214:CDS | 45.0% | |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1.2:43145949-43145968 | MS.gene39214:CDS | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1.2:43146604-43146623 | MS.gene39214:intron | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1.2:43148023-43148042 | None:intergenic | 45.0% | |
| GTCACTTACACTTCCAAGGA+AGG | + | chr1.2:43147976-43147995 | None:intergenic | 45.0% | |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1.2:43145990-43146009 | MS.gene39214:intron | 45.0% | |
| TCCATCAACACCTGAAGTTG+GGG | - | chr1.2:43146526-43146545 | MS.gene39214:intron | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1.2:43145971-43145990 | MS.gene39214:CDS | 45.0% |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1.2:43148041-43148060 | None:intergenic | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1.2:43145927-43145946 | MS.gene39214:CDS | 45.0% |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1.2:43145925-43145944 | MS.gene39214:CDS | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1.2:43148044-43148063 | None:intergenic | 45.0% |
| !! | TTCACGCTCGGCTATTTTGA+CGG | - | chr1.2:43146427-43146446 | MS.gene39214:intron | 45.0% |
| !!! | AGTTTTTTTTTTTTTTTTTA+CGG | + | chr1.2:43147255-43147274 | None:intergenic | 5.0% |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1.2:43146595-43146614 | MS.gene39214:intron | 50.0% | |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1.2:43146577-43146596 | MS.gene39214:intron | 50.0% | |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1.2:43146157-43146176 | None:intergenic | 50.0% | |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1.2:43148025-43148044 | MS.gene39214:CDS | 50.0% | |
| TGTGCAAGGATAAGCAGGTG+CGG | - | chr1.2:43146609-43146628 | MS.gene39214:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1.2:43147832-43147851 | MS.gene39214:CDS | 50.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1.2:43145930-43145949 | MS.gene39214:CDS | 50.0% |
| !! | TCCCCAACTTCAGGTGTTGA+TGG | + | chr1.2:43146530-43146549 | None:intergenic | 50.0% |
| !!! | TCACGCTCGGCTATTTTGAC+GGG | - | chr1.2:43146428-43146447 | MS.gene39214:intron | 50.0% |
| ATCATGGGTAGTCGTGGCCT+TGG | - | chr1.2:43147819-43147838 | MS.gene39214:CDS | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1.2:43146164-43146183 | None:intergenic | 55.0% | |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1.2:43146158-43146177 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1.2:43146155-43146174 | MS.gene39214:CDS | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1.2:43146161-43146180 | MS.gene39214:CDS | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1.2:43146594-43146613 | None:intergenic | 55.0% | |
| ! | TTTGGTGGCAGAGCCTTCCT+TGG | - | chr1.2:43147960-43147979 | MS.gene39214:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 43145912 | 43148067 | 43145912 | ID=MS.gene39214 |
| chr1.2 | mRNA | 43145912 | 43148067 | 43145912 | ID=MS.gene39214.t1;Parent=MS.gene39214 |
| chr1.2 | exon | 43147797 | 43148067 | 43147797 | ID=MS.gene39214.t1.exon1;Parent=MS.gene39214.t1 |
| chr1.2 | CDS | 43147797 | 43148067 | 43147797 | ID=cds.MS.gene39214.t1;Parent=MS.gene39214.t1 |
| chr1.2 | exon | 43147354 | 43147460 | 43147354 | ID=MS.gene39214.t1.exon2;Parent=MS.gene39214.t1 |
| chr1.2 | CDS | 43147354 | 43147460 | 43147354 | ID=cds.MS.gene39214.t1;Parent=MS.gene39214.t1 |
| chr1.2 | exon | 43146126 | 43146244 | 43146126 | ID=MS.gene39214.t1.exon3;Parent=MS.gene39214.t1 |
| chr1.2 | CDS | 43146126 | 43146244 | 43146126 | ID=cds.MS.gene39214.t1;Parent=MS.gene39214.t1 |
| chr1.2 | exon | 43145912 | 43146008 | 43145912 | ID=MS.gene39214.t1.exon4;Parent=MS.gene39214.t1 |
| chr1.2 | CDS | 43145912 | 43146008 | 43145912 | ID=cds.MS.gene39214.t1;Parent=MS.gene39214.t1 |
| Gene Sequence |
| Protein sequence |
