Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39348.t1 | XP_003626825.1 | 99 | 605 | 6 | 0 | 1 | 605 | 1 | 605 | 0.00E+00 | 1193.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39348.t1 | Q9SIU0 | 84.2 | 608 | 92 | 1 | 6 | 613 | 5 | 608 | 5.9e-298 | 1024.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39348.t1 | G7LDG5 | 99.0 | 605 | 6 | 0 | 1 | 605 | 1 | 605 | 0.0e+00 | 1193.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052637 | MS.gene39348 | 0.821371 | 4.18E-53 | -1.69E-46 |
| MS.gene053147 | MS.gene39348 | 0.850691 | 1.44E-60 | -1.69E-46 |
| MS.gene053647 | MS.gene39348 | 0.814983 | 1.17E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene39348 | 0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene39348 | -0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene39348 | 0.816757 | 4.69E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene39348 | 0.843506 | 1.34E-58 | -1.69E-46 |
| MS.gene054581 | MS.gene39348 | 0.838866 | 2.23E-57 | -1.69E-46 |
| MS.gene060167 | MS.gene39348 | 0.830818 | 2.37E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene39348 | 0.802452 | 5.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39348 | MS.gene36359 | PPI |
| MS.gene39348 | MS.gene27680 | PPI |
| MS.gene58341 | MS.gene39348 | PPI |
| MS.gene39348 | MS.gene015800 | PPI |
| MS.gene05873 | MS.gene39348 | PPI |
| MS.gene055729 | MS.gene39348 | PPI |
| MS.gene014608 | MS.gene39348 | PPI |
| MS.gene39348 | MS.gene055730 | PPI |
| MS.gene36748 | MS.gene39348 | PPI |
| MS.gene39348 | MS.gene27682 | PPI |
| MS.gene40704 | MS.gene39348 | PPI |
| MS.gene39348 | MS.gene055731 | PPI |
| MS.gene072226 | MS.gene39348 | PPI |
| MS.gene011059 | MS.gene39348 | PPI |
| MS.gene39348 | MS.gene27681 | PPI |
| MS.gene40254 | MS.gene39348 | PPI |
| MS.gene72021 | MS.gene39348 | PPI |
| MS.gene019525 | MS.gene39348 | PPI |
| MS.gene52200 | MS.gene39348 | PPI |
| MS.gene023832 | MS.gene39348 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39348.t1 | MTR_8g009500 | 99.008 | 605 | 6 | 0 | 1 | 605 | 1 | 605 | 0.0 | 1234 |
| MS.gene39348.t1 | MTR_8g009500 | 99.609 | 511 | 2 | 0 | 95 | 605 | 1 | 511 | 0.0 | 1040 |
| MS.gene39348.t1 | MTR_8g009500 | 98.807 | 503 | 6 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1030 |
| MS.gene39348.t1 | MTR_8g032040 | 66.610 | 584 | 187 | 4 | 30 | 612 | 13 | 589 | 0.0 | 814 |
| MS.gene39348.t1 | MTR_7g076650 | 66.548 | 562 | 183 | 2 | 44 | 605 | 23 | 579 | 0.0 | 795 |
| MS.gene39348.t1 | MTR_7g076650 | 62.500 | 600 | 182 | 3 | 44 | 605 | 23 | 617 | 0.0 | 779 |
| MS.gene39348.t1 | MTR_7g076650 | 68.164 | 512 | 157 | 3 | 33 | 544 | 13 | 518 | 0.0 | 734 |
| MS.gene39348.t1 | MTR_8g014390 | 41.197 | 568 | 286 | 11 | 28 | 588 | 36 | 562 | 2.83e-141 | 423 |
| MS.gene39348.t1 | MTR_3g110330 | 42.115 | 558 | 293 | 10 | 54 | 609 | 42 | 571 | 1.01e-140 | 421 |
| MS.gene39348.t1 | MTR_8g102620 | 43.203 | 537 | 277 | 8 | 54 | 588 | 55 | 565 | 5.84e-140 | 420 |
| MS.gene39348.t1 | MTR_2g101040 | 41.725 | 568 | 283 | 11 | 28 | 588 | 123 | 649 | 1.57e-139 | 421 |
| MS.gene39348.t1 | MTR_2g101040 | 41.725 | 568 | 283 | 11 | 28 | 588 | 89 | 615 | 3.44e-139 | 420 |
| MS.gene39348.t1 | MTR_2g101040 | 41.667 | 564 | 281 | 11 | 28 | 584 | 89 | 611 | 1.13e-138 | 419 |
| MS.gene39348.t1 | MTR_2g101040 | 40.101 | 596 | 281 | 13 | 28 | 588 | 89 | 643 | 4.93e-135 | 410 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39348.t1 | AT2G13560 | 85.042 | 595 | 85 | 1 | 19 | 613 | 18 | 608 | 0.0 | 1050 |
| MS.gene39348.t1 | AT4G00570 | 66.014 | 562 | 183 | 2 | 44 | 605 | 32 | 585 | 0.0 | 781 |
| MS.gene39348.t1 | AT5G25880 | 41.786 | 560 | 296 | 10 | 54 | 611 | 52 | 583 | 3.71e-144 | 431 |
| MS.gene39348.t1 | AT5G25880 | 43.074 | 527 | 272 | 9 | 54 | 578 | 52 | 552 | 7.88e-144 | 429 |
| MS.gene39348.t1 | AT2G19900 | 43.575 | 537 | 275 | 8 | 54 | 588 | 45 | 555 | 6.12e-142 | 424 |
| MS.gene39348.t1 | AT1G79750 | 43.575 | 537 | 275 | 9 | 54 | 588 | 110 | 620 | 8.19e-142 | 426 |
| MS.gene39348.t1 | AT5G11670 | 41.786 | 560 | 296 | 9 | 54 | 611 | 52 | 583 | 3.49e-137 | 412 |
| MS.gene39348.t1 | AT2G19900 | 44.894 | 470 | 241 | 7 | 121 | 588 | 3 | 456 | 1.82e-128 | 387 |
| MS.gene39348.t1 | AT5G25880 | 42.593 | 432 | 221 | 8 | 54 | 483 | 52 | 458 | 1.13e-116 | 358 |
Find 145 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACGAAGCATTCTCCATTT+TGG | 0.169548 | 8.2:+81614407 | MS.gene39348:CDS |
| TGCTGTTATAGATGAGTTTA+TGG | 0.175785 | 8.2:+81611284 | MS.gene39348:CDS |
| TTTGCAGGAAATGGTAATAT+TGG | 0.231427 | 8.2:+81615747 | MS.gene39348:intron |
| GTTGCAATTGCTGGACTTCT+AGG | 0.233797 | 8.2:+81611918 | MS.gene39348:CDS |
| TACAGATGGGAGCAGAATTC+TGG | 0.237038 | 8.2:+81609702 | MS.gene39348:CDS |
| TGCAAGGAATTTGAAAGAAA+TGG | 0.244826 | 8.2:+81612920 | MS.gene39348:CDS |
| CAAGGAATTGGCATTACTAT+TGG | 0.271734 | 8.2:+81609745 | MS.gene39348:CDS |
| TATAATGTTGTCGCCCAAAA+TGG | 0.295757 | 8.2:-81614421 | None:intergenic |
| CGTATCCGACGGCATGTTAC+AGG | 0.306207 | 8.2:+81615945 | MS.gene39348:CDS |
| TGGATTTGACATGGCAAATA+TGG | 0.313389 | 8.2:-81614263 | None:intergenic |
| CGCCACTTGGCCAGTGCATT+AGG | 0.321819 | 8.2:-81607775 | None:intergenic |
| ACAGCTGGTGTTGCAATTGC+TGG | 0.329137 | 8.2:+81611909 | MS.gene39348:CDS |
| GATCTTGGAGTTCAAGGAAT+TGG | 0.345793 | 8.2:+81609733 | MS.gene39348:CDS |
| AGAGTGCAAAGAGTCAATTT+TGG | 0.357216 | 8.2:+81612474 | MS.gene39348:CDS |
| AAGGAATTGGCATTACTATT+GGG | 0.364280 | 8.2:+81609746 | MS.gene39348:CDS |
| CTTGCAAAAGGAAGGGCATC+TGG | 0.369192 | 8.2:-81612903 | None:intergenic |
| ATTCTGGGACTTGGAGATCT+TGG | 0.371211 | 8.2:+81609718 | MS.gene39348:CDS |
| AGCAAACCTACCCTGGAAAT+AGG | 0.377370 | 8.2:-81615797 | None:intergenic |
| CCGTTTAGTAATGTTGATCT+AGG | 0.379780 | 8.2:+81614459 | MS.gene39348:CDS |
| AATACCTGTACAATCACATT+TGG | 0.382169 | 8.2:-81611327 | None:intergenic |
| ATTTATTTCAGCATTGGTCT+TGG | 0.388679 | 8.2:+81615898 | MS.gene39348:intron |
| GAGTAGCCACATACTCTTTG+AGG | 0.390132 | 8.2:-81609805 | None:intergenic |
| TTGCAGCAGCATCGCCTTGA+TGG | 0.391714 | 8.2:+81611249 | MS.gene39348:CDS |
| AACAACATGTACCTATTTCC+AGG | 0.393408 | 8.2:+81615786 | MS.gene39348:CDS |
| CTATAACTGGCCAGCTGAGC+AGG | 0.395936 | 8.2:+81608926 | MS.gene39348:CDS |
| TGATGTCCATGGTCTATAAC+TGG | 0.411552 | 8.2:+81608913 | MS.gene39348:CDS |
| CTTGGAGATCTTGGAGTTCA+AGG | 0.414396 | 8.2:+81609727 | MS.gene39348:CDS |
| TCGACATTCTTCATGATCCT+TGG | 0.414537 | 8.2:+81605370 | MS.gene39348:CDS |
| GCAACAACTATCTTCTGCTT+GGG | 0.418709 | 8.2:-81611978 | None:intergenic |
| TTATTTATACCATTCTTTGT+TGG | 0.419412 | 8.2:-81614283 | None:intergenic |
| CTAGGTATTGGAGGCCCTCA+AGG | 0.420742 | 8.2:+81614219 | MS.gene39348:intron |
| GATCTATATGTTGCTGCTGC+TGG | 0.424864 | 8.2:+81609775 | MS.gene39348:CDS |
| TTGCTCCTTCCCTTAGTCCT+TGG | 0.432962 | 8.2:-81612947 | None:intergenic |
| TTATAGTGGTTGATCTGAAA+AGG | 0.434365 | 8.2:+81607719 | MS.gene39348:intron |
| AAAATGGAGAATGCTTCGTC+AGG | 0.436830 | 8.2:-81614405 | None:intergenic |
| AAATGGATCGCCAAGGACTA+AGG | 0.437660 | 8.2:+81612937 | MS.gene39348:CDS |
| TGTTGACGTTGAACCCTTGA+GGG | 0.438778 | 8.2:-81614233 | None:intergenic |
| GATTTAAAGACCTGCTCAGC+TGG | 0.439436 | 8.2:-81608936 | None:intergenic |
| TGCTTGGGGAAGTCAATCAT+TGG | 0.442318 | 8.2:-81611963 | None:intergenic |
| CATTTCTACCTTGATATTGA+AGG | 0.442872 | 8.2:-81616616 | None:intergenic |
| TTCCTGTGATGATTGACGTT+GGG | 0.445155 | 8.2:+81610503 | MS.gene39348:CDS |
| CTCCTAGGACTATCTGCTGT+TGG | 0.448226 | 8.2:+81613867 | MS.gene39348:CDS |
| GATAGTCCTAGGAGGACATC+AGG | 0.454256 | 8.2:-81613858 | None:intergenic |
| GGGAGCAGAATTCTGGGACT+TGG | 0.457800 | 8.2:+81609709 | MS.gene39348:CDS |
| GTAGGACTTCTTACTGTCCA+TGG | 0.457877 | 8.2:+81617859 | MS.gene39348:intron |
| ACAGATGGGAGCAGAATTCT+GGG | 0.459014 | 8.2:+81609703 | MS.gene39348:CDS |
| ATCTCGTTCTGTCATGGAAA+AGG | 0.463071 | 8.2:-81607313 | None:intergenic |
| AAGATAGTTGTTGCTGGTGC+TGG | 0.467131 | 8.2:+81611987 | MS.gene39348:CDS |
| ACTGTTGGAGTATATACTAT+TGG | 0.467180 | 8.2:-81608810 | None:intergenic |
| AAACGCTCAATCTGCACGTC+AGG | 0.469649 | 8.2:-81607378 | None:intergenic |
| ATAGGTACATGTTGTTTCCC+TGG | 0.472498 | 8.2:-81615779 | None:intergenic |
| TCTTTCAAATTCCTTGCAAA+AGG | 0.472671 | 8.2:-81612915 | None:intergenic |
| TGCAGCAGCATCGCCTTGAT+GGG | 0.473784 | 8.2:+81611250 | MS.gene39348:CDS |
| TACTACTGCAGTGCTGGAAT+CGG | 0.477528 | 8.2:+81612389 | MS.gene39348:intron |
| TCAAATTCCTTGCAAAAGGA+AGG | 0.481202 | 8.2:-81612911 | None:intergenic |
| CCTAGATCAACATTACTAAA+CGG | 0.484530 | 8.2:-81614459 | None:intergenic |
| CTTGTATGTCAGAACTATAG+TGG | 0.485090 | 8.2:+81608837 | MS.gene39348:CDS |
| ATGTCAAATCCAACAAAGAA+TGG | 0.485534 | 8.2:+81614274 | MS.gene39348:CDS |
| TCTCTACCCCAGGGGACAGC+TGG | 0.486859 | 8.2:+81611894 | MS.gene39348:intron |
| AGCAACAACTATCTTCTGCT+TGG | 0.489107 | 8.2:-81611979 | None:intergenic |
| AGCAGAAGGATATCATGAAA+TGG | 0.489300 | 8.2:+81616783 | MS.gene39348:CDS |
| TCGGTTTAGTATTCGCCACT+TGG | 0.489619 | 8.2:-81607788 | None:intergenic |
| CTAGGACTATCTGCTGTTGG+AGG | 0.492913 | 8.2:+81613870 | MS.gene39348:CDS |
| GTCCTACTATCGTTCATAAA+CGG | 0.494086 | 8.2:+81605343 | MS.gene39348:CDS |
| GCACATCATCATTAAACATT+CGG | 0.495254 | 8.2:-81611512 | None:intergenic |
| TGGAAGCTGTCTTTACTCGC+TGG | 0.495700 | 8.2:+81611304 | MS.gene39348:CDS |
| AATATTGGACACTGCAACCA+GGG | 0.501417 | 8.2:+81615762 | MS.gene39348:CDS |
| AGAGCTTCGCAAACTAAGTC+GGG | 0.501871 | 8.2:+81616813 | MS.gene39348:CDS |
| AAGCAGAAGATAGTTGTTGC+TGG | 0.502605 | 8.2:+81611981 | MS.gene39348:CDS |
| GAGAGCTTCGCAAACTAAGT+CGG | 0.504714 | 8.2:+81616812 | MS.gene39348:CDS |
| AATCACCGCCGGTGAGGACG+TGG | 0.518417 | 8.2:-81605278 | None:intergenic |
| CTAGGTGCTGTAAGAGCTCA+AGG | 0.520317 | 8.2:+81611936 | MS.gene39348:CDS |
| CTGGCCAAATGTGATTGTAC+AGG | 0.520962 | 8.2:+81611323 | MS.gene39348:CDS |
| CAAATTCCTTGCAAAAGGAA+GGG | 0.521173 | 8.2:-81612910 | None:intergenic |
| GTGAAGAAGAGGTTCTCAAA+GGG | 0.522056 | 8.2:+81616584 | MS.gene39348:CDS |
| ATTTCTACCTTGATATTGAA+GGG | 0.522938 | 8.2:-81616615 | None:intergenic |
| ACGTCAGGAGACACAACATT+TGG | 0.524491 | 8.2:-81607363 | None:intergenic |
| TTGTTGACGTTGAACCCTTG+AGG | 0.529789 | 8.2:-81614234 | None:intergenic |
| CTCAAACGCCACGTCCTCAC+CGG | 0.530207 | 8.2:+81605270 | MS.gene39348:CDS |
| CTCCAACAGCAGATAGTCCT+AGG | 0.532338 | 8.2:-81613869 | None:intergenic |
| TCTCATTTCTGTCATGCAGT+CGG | 0.533663 | 8.2:-81607807 | None:intergenic |
| GATATGATTGTAGTTACAGA+TGG | 0.537955 | 8.2:+81609688 | MS.gene39348:CDS |
| AAAACAATGGCAAGGATGCT+GGG | 0.541419 | 8.2:+81612431 | MS.gene39348:CDS |
| GCACTGAAATACATTCCTCT+TGG | 0.543451 | 8.2:-81608873 | None:intergenic |
| CTCCGTTTATGAACGATAGT+AGG | 0.544773 | 8.2:-81605345 | None:intergenic |
| TCAGGAGACACAACATTTGG+AGG | 0.547588 | 8.2:-81607360 | None:intergenic |
| ACCTTCTGATCCTAATGCAC+TGG | 0.547636 | 8.2:+81607765 | MS.gene39348:CDS |
| TAGGTATTGGAGGCCCTCAA+GGG | 0.547927 | 8.2:+81614220 | MS.gene39348:intron |
| CAAGATAGTCATCCCCATCA+AGG | 0.552456 | 8.2:-81611263 | None:intergenic |
| GAGACGATCTCGTTCTGTCA+TGG | 0.554372 | 8.2:-81607319 | None:intergenic |
| TAGTTGTTGCTGGTGCTGGC+AGG | 0.556281 | 8.2:+81611991 | MS.gene39348:CDS |
| AATGTTTAATGATGATGTGC+AGG | 0.562033 | 8.2:+81611515 | MS.gene39348:CDS |
| CGTTTGAGTCGTTGAAGTAA+CGG | 0.562516 | 8.2:-81605255 | None:intergenic |
| TATAGAAGAAGCTGTGGAGG+AGG | 0.562863 | 8.2:+81616756 | MS.gene39348:CDS |
| GTGAAGCCTGATGTCCTCCT+AGG | 0.564961 | 8.2:+81613852 | MS.gene39348:CDS |
| AGGAGCAAGTCTCGCAGAAG+TGG | 0.572831 | 8.2:+81612962 | MS.gene39348:CDS |
| AATGGATCGCCAAGGACTAA+GGG | 0.573558 | 8.2:+81612938 | MS.gene39348:CDS |
| ATAGTATATACTCCAACAGT+AGG | 0.579352 | 8.2:+81608813 | MS.gene39348:CDS |
| CGATCTTTCACTACGATGGA+AGG | 0.580755 | 8.2:+81605315 | MS.gene39348:CDS |
| TGCATATATGAGTGAAGAAG+AGG | 0.581793 | 8.2:+81616573 | MS.gene39348:CDS |
| GCCAGTGCATTAGGATCAGA+AGG | 0.582116 | 8.2:-81607766 | None:intergenic |
| GTCCCAACGTCAATCATCAC+AGG | 0.582608 | 8.2:-81610505 | None:intergenic |
| CTTGAAGTTCAAGCAAGAGA+TGG | 0.582823 | 8.2:+81607742 | MS.gene39348:CDS |
| TGTTATAGAAGAAGCTGTGG+AGG | 0.584699 | 8.2:+81616753 | MS.gene39348:CDS |
| AAATGGAGAATGCTTCGTCA+GGG | 0.585250 | 8.2:-81614404 | None:intergenic |
| TTGTATGTCAGAACTATAGT+GGG | 0.587455 | 8.2:+81608838 | MS.gene39348:CDS |
| AGTGAAGAAGAGGTTCTCAA+AGG | 0.587972 | 8.2:+81616583 | MS.gene39348:CDS |
| TTTGACATGGCAAATATGGC+TGG | 0.591614 | 8.2:-81614259 | None:intergenic |
| TAATATTGGACACTGCAACC+AGG | 0.593488 | 8.2:+81615761 | MS.gene39348:CDS |
| TGACATACAAGACCTACTGT+TGG | 0.598875 | 8.2:-81608825 | None:intergenic |
| GACAACATTATATTTGCTAG+TGG | 0.603217 | 8.2:+81614432 | MS.gene39348:CDS |
| GTGGAGGAGGATCTAGCAGA+AGG | 0.606861 | 8.2:+81616769 | MS.gene39348:CDS |
| TCGTGGAGAAATGATGTCCA+TGG | 0.612816 | 8.2:+81608902 | MS.gene39348:CDS |
| AGCTCACAAACTTTGAACCA+TGG | 0.613710 | 8.2:-81617876 | None:intergenic |
| ATTCTTTGTTGGATTTGACA+TGG | 0.615831 | 8.2:-81614272 | None:intergenic |
| AGCTGGCCAGTTATAGACCA+TGG | 0.616327 | 8.2:-81608919 | None:intergenic |
| CTTCCTGTGATGATTGACGT+TGG | 0.616370 | 8.2:+81610502 | MS.gene39348:CDS |
| GTGCTGTAAGAGCTCAAGGA+AGG | 0.620608 | 8.2:+81611940 | MS.gene39348:CDS |
| TATTTCAGTGCTGAGGATCG+TGG | 0.621203 | 8.2:+81608885 | MS.gene39348:CDS |
| ATGCAGGGATTAATCACAGA+AGG | 0.622254 | 8.2:+81612864 | MS.gene39348:intron |
| AGCAGCCTGTAACATGCCGT+CGG | 0.623262 | 8.2:-81615950 | None:intergenic |
| TGGAGGATTGTTCTCAAGCG+AGG | 0.623454 | 8.2:+81613887 | MS.gene39348:CDS |
| GGCTCTAGGATCGTATCCGA+CGG | 0.624020 | 8.2:+81615934 | MS.gene39348:CDS |
| ATCCTAATGCACTGGCCAAG+TGG | 0.624552 | 8.2:+81607773 | MS.gene39348:CDS |
| ACAACATGTACCTATTTCCA+GGG | 0.625477 | 8.2:+81615787 | MS.gene39348:CDS |
| GTCGCGATCTTTCACTACGA+TGG | 0.627814 | 8.2:+81605311 | MS.gene39348:CDS |
| CAGAATTCGAGATATTACAA+AGG | 0.629110 | 8.2:+81616717 | MS.gene39348:intron |
| CAACAACTATCTTCTGCTTG+GGG | 0.630847 | 8.2:-81611977 | None:intergenic |
| TTACGCACTTTATTGAACCA+AGG | 0.636960 | 8.2:-81605387 | None:intergenic |
| ATATGATTGTAGTTACAGAT+GGG | 0.637411 | 8.2:+81609689 | MS.gene39348:CDS |
| AGGAATGTATTTCAGTGCTG+AGG | 0.642678 | 8.2:+81608878 | MS.gene39348:CDS |
| TGAAGTAATCACCGCCGGTG+AGG | 0.643325 | 8.2:-81605284 | None:intergenic |
| TTGAAAGAAATGGATCGCCA+AGG | 0.643697 | 8.2:+81612930 | MS.gene39348:CDS |
| ATCATCATTAAACATTCGGT+AGG | 0.645608 | 8.2:-81611508 | None:intergenic |
| GCAGCAGCATCGCCTTGATG+GGG | 0.650636 | 8.2:+81611251 | MS.gene39348:CDS |
| GATCGCCAAGGACTAAGGGA+AGG | 0.655509 | 8.2:+81612942 | MS.gene39348:CDS |
| TGTTACAGGCTGCTGCTGAG+CGG | 0.655909 | 8.2:+81615959 | MS.gene39348:CDS |
| CAGTATGAAGTAATCACCGC+CGG | 0.658289 | 8.2:-81605289 | None:intergenic |
| AAACGCCACGTCCTCACCGG+CGG | 0.658879 | 8.2:+81605273 | MS.gene39348:CDS |
| AATGGAGAATGCTTCGTCAG+GGG | 0.673016 | 8.2:-81614403 | None:intergenic |
| AGCTGTTATAGAAGAAGCTG+TGG | 0.673871 | 8.2:+81616750 | MS.gene39348:CDS |
| GGGCTGTTCAGAAGACCAAG+AGG | 0.697115 | 8.2:+81608858 | MS.gene39348:CDS |
| CAACAGCAGATAGTCCTAGG+AGG | 0.697965 | 8.2:-81613866 | None:intergenic |
| GAGACGACGATGATCTCGCG+CGG | 0.723548 | 8.2:-81605233 | None:intergenic |
| CGAGATCGTCTCGATCTACG+AGG | 0.743043 | 8.2:+81607330 | MS.gene39348:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 81605216 | 81617895 | 81605216 | ID=MS.gene39348 |
| chr8.2 | mRNA | 81605216 | 81617895 | 81605216 | ID=MS.gene39348.t1;Parent=MS.gene39348 |
| chr8.2 | exon | 81605216 | 81605401 | 81605216 | ID=MS.gene39348.t1.exon1;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81605216 | 81605401 | 81605216 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81607306 | 81607402 | 81607306 | ID=MS.gene39348.t1.exon2;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81607306 | 81607402 | 81607306 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81607725 | 81607843 | 81607725 | ID=MS.gene39348.t1.exon3;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81607725 | 81607843 | 81607725 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81608780 | 81608947 | 81608780 | ID=MS.gene39348.t1.exon4;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81608780 | 81608947 | 81608780 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81609685 | 81609813 | 81609685 | ID=MS.gene39348.t1.exon5;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81609685 | 81609813 | 81609685 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81610499 | 81610559 | 81610499 | ID=MS.gene39348.t1.exon6;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81610499 | 81610559 | 81610499 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81611241 | 81611344 | 81611241 | ID=MS.gene39348.t1.exon7;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81611241 | 81611344 | 81611241 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81611453 | 81611536 | 81611453 | ID=MS.gene39348.t1.exon8;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81611453 | 81611536 | 81611453 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81611906 | 81612012 | 81611906 | ID=MS.gene39348.t1.exon9;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81611906 | 81612012 | 81611906 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81612400 | 81612511 | 81612400 | ID=MS.gene39348.t1.exon10;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81612400 | 81612511 | 81612400 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81612870 | 81612983 | 81612870 | ID=MS.gene39348.t1.exon11;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81612870 | 81612983 | 81612870 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81613843 | 81613908 | 81613843 | ID=MS.gene39348.t1.exon12;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81613843 | 81613908 | 81613843 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81614223 | 81614295 | 81614223 | ID=MS.gene39348.t1.exon13;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81614223 | 81614295 | 81614223 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81614394 | 81614480 | 81614394 | ID=MS.gene39348.t1.exon14;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81614394 | 81614480 | 81614394 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81615754 | 81615808 | 81615754 | ID=MS.gene39348.t1.exon15;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81615754 | 81615808 | 81615754 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81615909 | 81615980 | 81615909 | ID=MS.gene39348.t1.exon16;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81615909 | 81615980 | 81615909 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81616567 | 81616629 | 81616567 | ID=MS.gene39348.t1.exon17;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81616567 | 81616629 | 81616567 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81616720 | 81616834 | 81616720 | ID=MS.gene39348.t1.exon18;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81616720 | 81616834 | 81616720 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| chr8.2 | exon | 81617863 | 81617895 | 81617863 | ID=MS.gene39348.t1.exon19;Parent=MS.gene39348.t1 |
| chr8.2 | CDS | 81617863 | 81617895 | 81617863 | ID=cds.MS.gene39348.t1;Parent=MS.gene39348.t1 |
| Gene Sequence |
| Protein sequence |
