Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39710.t1 | KEH17957.1 | 93.6 | 235 | 10 | 1 | 1 | 230 | 52 | 286 | 3.20E-115 | 424.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39710.t1 | Q8S9K8 | 41.5 | 236 | 128 | 4 | 2 | 230 | 42 | 274 | 1.8e-42 | 174.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39710.t1 | A0A072TKK7 | 93.6 | 235 | 10 | 1 | 1 | 230 | 52 | 286 | 2.3e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene39710 | 0.839922 | 1.19E-57 | -1.69E-46 |
| MS.gene052211 | MS.gene39710 | 0.817329 | 3.49E-52 | -1.69E-46 |
| MS.gene052212 | MS.gene39710 | 0.815801 | 7.67E-52 | -1.69E-46 |
| MS.gene054146 | MS.gene39710 | 0.869161 | 3.81E-66 | -1.69E-46 |
| MS.gene057547 | MS.gene39710 | 0.84618 | 2.55E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87350 | MS.gene39710 | PPI |
| MS.gene39710 | MS.gene010412 | PPI |
| MS.gene39710 | MS.gene041151 | PPI |
| MS.gene28543 | MS.gene39710 | PPI |
| MS.gene39710 | MS.gene011884 | PPI |
| MS.gene39710 | MS.gene047689 | PPI |
| MS.gene39710 | MS.gene44962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39710.t1 | MTR_8g007675 | 93.617 | 235 | 10 | 1 | 1 | 230 | 52 | 286 | 3.93e-159 | 442 |
| MS.gene39710.t1 | MTR_8g008505 | 68.085 | 235 | 69 | 2 | 1 | 230 | 48 | 281 | 4.90e-112 | 322 |
| MS.gene39710.t1 | MTR_8g008660 | 67.234 | 235 | 69 | 2 | 1 | 230 | 47 | 278 | 1.72e-109 | 316 |
| MS.gene39710.t1 | MTR_8g008500 | 65.546 | 238 | 74 | 3 | 1 | 230 | 47 | 284 | 9.54e-106 | 306 |
| MS.gene39710.t1 | MTR_3g464040 | 65.957 | 235 | 72 | 2 | 1 | 230 | 39 | 270 | 2.05e-105 | 305 |
| MS.gene39710.t1 | MTR_8g007670 | 59.149 | 235 | 90 | 2 | 2 | 230 | 28 | 262 | 7.20e-98 | 286 |
| MS.gene39710.t1 | MTR_5g018300 | 51.695 | 236 | 107 | 3 | 1 | 230 | 28 | 262 | 1.19e-77 | 234 |
| MS.gene39710.t1 | MTR_5g018320 | 50.424 | 236 | 110 | 3 | 1 | 230 | 25 | 259 | 7.37e-77 | 233 |
| MS.gene39710.t1 | MTR_8g007670 | 51.489 | 235 | 64 | 3 | 2 | 230 | 28 | 218 | 3.50e-75 | 227 |
| MS.gene39710.t1 | MTR_5g018280 | 47.881 | 236 | 115 | 4 | 1 | 230 | 28 | 261 | 5.19e-65 | 202 |
| MS.gene39710.t1 | MTR_8g079120 | 38.983 | 236 | 130 | 6 | 2 | 230 | 32 | 260 | 1.21e-47 | 158 |
| MS.gene39710.t1 | MTR_5g018365 | 38.136 | 236 | 132 | 6 | 2 | 230 | 33 | 261 | 1.07e-46 | 155 |
| MS.gene39710.t1 | MTR_5g018350 | 37.288 | 236 | 134 | 7 | 2 | 230 | 28 | 256 | 1.75e-41 | 142 |
| MS.gene39710.t1 | MTR_5g068100 | 33.051 | 236 | 147 | 4 | 1 | 230 | 50 | 280 | 2.76e-32 | 119 |
| MS.gene39710.t1 | MTR_7g015220 | 34.615 | 234 | 140 | 5 | 1 | 227 | 144 | 371 | 9.48e-32 | 119 |
| MS.gene39710.t1 | MTR_3g093730 | 33.476 | 233 | 143 | 4 | 1 | 227 | 56 | 282 | 4.54e-29 | 110 |
| MS.gene39710.t1 | MTR_8g079120 | 41.135 | 141 | 72 | 4 | 2 | 135 | 74 | 210 | 1.04e-27 | 105 |
| MS.gene39710.t1 | MTR_3g005410 | 30.213 | 235 | 152 | 4 | 1 | 228 | 114 | 343 | 3.15e-27 | 107 |
| MS.gene39710.t1 | MTR_5g008130 | 56.962 | 79 | 34 | 0 | 152 | 230 | 2 | 80 | 3.76e-25 | 94.7 |
| MS.gene39710.t1 | MTR_3g093730 | 28.448 | 232 | 111 | 5 | 1 | 227 | 56 | 237 | 4.89e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39710.t1 | AT3G50440 | 41.525 | 236 | 128 | 4 | 2 | 230 | 42 | 274 | 2.15e-56 | 181 |
| MS.gene39710.t1 | AT2G23620 | 39.916 | 238 | 131 | 6 | 1 | 230 | 29 | 262 | 2.69e-47 | 157 |
| MS.gene39710.t1 | AT2G23610 | 41.176 | 238 | 126 | 7 | 2 | 230 | 30 | 262 | 2.10e-46 | 155 |
| MS.gene39710.t1 | AT2G23600 | 39.496 | 238 | 132 | 6 | 1 | 230 | 29 | 262 | 1.79e-45 | 152 |
| MS.gene39710.t1 | AT2G23600 | 39.496 | 238 | 132 | 6 | 1 | 230 | 44 | 277 | 2.13e-45 | 152 |
| MS.gene39710.t1 | AT2G23550 | 37.815 | 238 | 135 | 6 | 2 | 230 | 29 | 262 | 2.00e-44 | 150 |
| MS.gene39710.t1 | AT2G23550 | 37.815 | 238 | 135 | 6 | 2 | 230 | 36 | 269 | 2.45e-44 | 150 |
| MS.gene39710.t1 | AT2G23580 | 38.397 | 237 | 135 | 5 | 2 | 230 | 29 | 262 | 8.91e-44 | 148 |
| MS.gene39710.t1 | AT2G23560 | 38.075 | 239 | 130 | 8 | 2 | 230 | 29 | 259 | 7.51e-42 | 143 |
| MS.gene39710.t1 | AT5G10300 | 36.596 | 235 | 141 | 3 | 1 | 230 | 26 | 257 | 7.75e-40 | 138 |
| MS.gene39710.t1 | AT2G23590 | 36.287 | 237 | 132 | 6 | 1 | 230 | 47 | 271 | 1.23e-39 | 137 |
| MS.gene39710.t1 | AT4G37150 | 35.865 | 237 | 141 | 5 | 1 | 230 | 23 | 255 | 2.37e-39 | 136 |
| MS.gene39710.t1 | AT2G23570 | 40.884 | 181 | 102 | 3 | 52 | 230 | 1 | 178 | 1.53e-36 | 127 |
| MS.gene39710.t1 | AT5G58310 | 33.333 | 237 | 143 | 4 | 2 | 227 | 26 | 258 | 5.88e-34 | 122 |
| MS.gene39710.t1 | AT1G33990 | 32.479 | 234 | 146 | 5 | 2 | 228 | 118 | 346 | 1.14e-33 | 124 |
| MS.gene39710.t1 | AT3G29770 | 35.897 | 234 | 139 | 4 | 1 | 228 | 158 | 386 | 1.21e-32 | 122 |
| MS.gene39710.t1 | AT4G09900 | 30.342 | 234 | 151 | 5 | 2 | 228 | 119 | 347 | 3.66e-32 | 120 |
| MS.gene39710.t1 | AT2G23550 | 33.621 | 232 | 124 | 6 | 2 | 230 | 29 | 233 | 1.94e-31 | 115 |
| MS.gene39710.t1 | AT2G23610 | 35.745 | 235 | 98 | 7 | 2 | 230 | 30 | 217 | 3.40e-31 | 114 |
| MS.gene39710.t1 | AT1G26360 | 33.333 | 234 | 145 | 4 | 1 | 228 | 209 | 437 | 1.50e-30 | 117 |
| MS.gene39710.t1 | AT4G16690 | 32.627 | 236 | 136 | 5 | 1 | 225 | 32 | 255 | 7.85e-29 | 109 |
| MS.gene39710.t1 | AT3G10870 | 30.901 | 233 | 153 | 3 | 1 | 227 | 40 | 270 | 9.55e-29 | 109 |
| MS.gene39710.t1 | AT1G69240 | 31.780 | 236 | 148 | 5 | 1 | 228 | 207 | 437 | 1.63e-27 | 109 |
| MS.gene39710.t1 | AT2G23550 | 39.007 | 141 | 76 | 4 | 2 | 133 | 36 | 175 | 1.22e-23 | 94.4 |
| MS.gene39710.t1 | AT5G10300 | 37.324 | 142 | 84 | 1 | 1 | 137 | 26 | 167 | 3.45e-23 | 93.2 |
| MS.gene39710.t1 | AT2G23600 | 38.462 | 143 | 79 | 4 | 1 | 135 | 44 | 185 | 3.99e-22 | 90.1 |
| MS.gene39710.t1 | AT2G23580 | 36.620 | 142 | 82 | 3 | 2 | 135 | 29 | 170 | 1.11e-20 | 86.7 |
| MS.gene39710.t1 | AT4G37140 | 42.169 | 83 | 43 | 1 | 1 | 78 | 23 | 105 | 6.50e-17 | 75.1 |
| MS.gene39710.t1 | AT4G37140 | 38.571 | 70 | 38 | 1 | 1 | 65 | 23 | 92 | 3.01e-11 | 58.9 |
Find 55 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCATTGATGACATTTA+TGG | 0.079683 | 8.1:+85956452 | MS.gene39710:CDS |
| CATCTTGGATGCCATGAATT+TGG | 0.134984 | 8.1:-85956960 | None:intergenic |
| TAGAAGGATTAGTTCTTTAA+TGG | 0.232720 | 8.1:+85956877 | MS.gene39710:CDS |
| AGTTCAGCATCTTTATAAAT+TGG | 0.246349 | 8.1:-85957153 | None:intergenic |
| AGGGTGGAACTAAGCTTCTT+TGG | 0.287632 | 8.1:-85957357 | None:intergenic |
| TGAATCTCTTGTACCTGAAT+TGG | 0.306427 | 8.1:-85956411 | None:intergenic |
| TACCCTTCCATTTCTATCAT+TGG | 0.315130 | 8.1:-85957199 | None:intergenic |
| ACTATTGAATTGGCTGGTTC+AGG | 0.333088 | 8.1:+85956381 | MS.gene39710:CDS |
| ATCTTGGATGCCATGAATTT+GGG | 0.341185 | 8.1:-85956959 | None:intergenic |
| TAATGTTACAACTATTGAAT+TGG | 0.359160 | 8.1:+85956371 | MS.gene39710:CDS |
| CAAACCTGCAACTGCTAGAT+TGG | 0.368595 | 8.1:+85956931 | MS.gene39710:CDS |
| TGAGAAGGTGGAAGTGATAG+AGG | 0.372293 | 8.1:+85957305 | MS.gene39710:CDS |
| CTAGCAGTTGCAGGTTTGTT+GGG | 0.377021 | 8.1:-85956926 | None:intergenic |
| CCAAAGGAAAAGGTGATTCT+TGG | 0.379863 | 8.1:+85956486 | MS.gene39710:CDS |
| TGTACCTCTTGAAGAACAAC+TGG | 0.381557 | 8.1:-85956606 | None:intergenic |
| TTCAGGTATCAATCCAATTC+AGG | 0.386595 | 8.1:+85956398 | MS.gene39710:CDS |
| TCTAGCAGTTGCAGGTTTGT+TGG | 0.395041 | 8.1:-85956927 | None:intergenic |
| ATTGGTTGGACCCAAATTCA+TGG | 0.411752 | 8.1:+85956949 | MS.gene39710:CDS |
| ACAGTTACCAATGATAGAAA+TGG | 0.420687 | 8.1:+85957192 | MS.gene39710:CDS |
| ATCACTTCCACCTTCTCAAA+TGG | 0.422893 | 8.1:-85957300 | None:intergenic |
| CCAACCAATCTAGCAGTTGC+AGG | 0.423936 | 8.1:-85956935 | None:intergenic |
| TTTACAAATGTGGATGATTG+AGG | 0.432754 | 8.1:+85957269 | MS.gene39710:CDS |
| CCATCATGTAGCAAGCTAGA+AGG | 0.455347 | 8.1:+85956861 | MS.gene39710:intron |
| GTTACAACTATTGAATTGGC+TGG | 0.461529 | 8.1:+85956375 | MS.gene39710:CDS |
| ATCTCTTCCTCCAAAGGAAA+AGG | 0.464266 | 8.1:+85956476 | MS.gene39710:CDS |
| CCTGCAACTGCTAGATTGGT+TGG | 0.480634 | 8.1:+85956935 | MS.gene39710:CDS |
| GCATCTTTATAAATTGGTAC+AGG | 0.494562 | 8.1:-85957147 | None:intergenic |
| AAATTGGTACAGGTCTCACT+AGG | 0.515680 | 8.1:-85957137 | None:intergenic |
| GTCTCACTAGGGACAATGCA+AGG | 0.519627 | 8.1:-85957125 | None:intergenic |
| TTACAAATGTGGATGATTGA+GGG | 0.527104 | 8.1:+85957270 | MS.gene39710:CDS |
| TGGTGATAATTGATACATCT+TGG | 0.534510 | 8.1:-85956975 | None:intergenic |
| CAAAAGTGACAATTTGATAA+CGG | 0.537259 | 8.1:+85957242 | MS.gene39710:CDS |
| GATTCCATAAATGTCATCAA+TGG | 0.541738 | 8.1:-85956456 | None:intergenic |
| TATGGAATCTCTTCCTCCAA+AGG | 0.542372 | 8.1:+85956470 | MS.gene39710:CDS |
| GGTGTCCACATCTGTTGCTA+TGG | 0.544684 | 8.1:+85956512 | MS.gene39710:CDS |
| GCAACTATGCTGAAATCTGC+TGG | 0.549763 | 8.1:+85956345 | None:intergenic |
| TTGTGCAATCTTTAGAAGGG+TGG | 0.551296 | 8.1:-85957373 | None:intergenic |
| AAGGAAAAGGTGATTCTTGG+TGG | 0.551606 | 8.1:+85956489 | MS.gene39710:CDS |
| ATACCCAGTTGTTCTTCAAG+AGG | 0.566134 | 8.1:+85956602 | MS.gene39710:CDS |
| AAGTGGTCCATTTGAGAAGG+TGG | 0.568965 | 8.1:+85957293 | MS.gene39710:CDS |
| AGGAAAAGGTGATTCTTGGT+GGG | 0.581335 | 8.1:+85956490 | MS.gene39710:CDS |
| ATTAACATATATACCTCAGA+TGG | 0.582287 | 8.1:-85956995 | None:intergenic |
| GAAGAACAACTGGGTATGAG+AGG | 0.584782 | 8.1:-85956596 | None:intergenic |
| TTACCAATGATAGAAATGGA+AGG | 0.600752 | 8.1:+85957196 | MS.gene39710:CDS |
| GGGAAGTGGTCCATTTGAGA+AGG | 0.602052 | 8.1:+85957290 | MS.gene39710:CDS |
| TAACGGAGGATTTACAAATG+TGG | 0.603019 | 8.1:+85957259 | MS.gene39710:CDS |
| ATGTGGATGATTGAGGGAAG+TGG | 0.609911 | 8.1:+85957276 | MS.gene39710:CDS |
| TACCAATGATAGAAATGGAA+GGG | 0.611098 | 8.1:+85957197 | MS.gene39710:CDS |
| GGAAAAGGTGATTCTTGGTG+GGG | 0.614732 | 8.1:+85956491 | MS.gene39710:CDS |
| GATAGAGGATTCTGATCACA+TGG | 0.632772 | 8.1:+85957320 | MS.gene39710:CDS |
| AATTGGTACAGGTCTCACTA+GGG | 0.640202 | 8.1:-85957136 | None:intergenic |
| TCTCACTAGGGACAATGCAA+GGG | 0.646794 | 8.1:-85957124 | None:intergenic |
| AAGTGACAATTTGATAACGG+AGG | 0.648075 | 8.1:+85957245 | MS.gene39710:CDS |
| GTATCAATTATCACCATCTG+AGG | 0.677571 | 8.1:+85956982 | MS.gene39710:CDS |
| GTACCTCTTGAAGAACAACT+GGG | 0.719501 | 8.1:-85956605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTCAAAATTAAATTTTTA+TGG | - | chr8.1:85957025-85957044 | None:intergenic | 10.0% |
| !!! | ATAAAAATTTAATTTTGACT+TGG | + | chr8.1:85957024-85957043 | MS.gene39710:intron | 10.0% |
| !!! | GTTAATTTTTAATTTAATTG+AGG | - | chr8.1:85956712-85956731 | None:intergenic | 10.0% |
| !! | TTGCTTATGATAAAAAATTT+AGG | - | chr8.1:85957225-85957244 | None:intergenic | 15.0% |
| !!! | ATTTTCAAGAATAATTTTGT+GGG | - | chr8.1:85956671-85956690 | None:intergenic | 15.0% |
| !!! | TTAATCAAAGTTTAAAATTG+TGG | - | chr8.1:85956765-85956784 | None:intergenic | 15.0% |
| !! | TAATGTTACAACTATTGAAT+TGG | + | chr8.1:85956371-85956390 | MS.gene39710:CDS | 20.0% |
| !!! | CATTTTCAAGAATAATTTTG+TGG | - | chr8.1:85956672-85956691 | None:intergenic | 20.0% |
| ! | AAATCCTACACATTTCAATT+TGG | - | chr8.1:85957102-85957121 | None:intergenic | 25.0% |
| ! | AGTTCAGCATCTTTATAAAT+TGG | - | chr8.1:85957156-85957175 | None:intergenic | 25.0% |
| ! | ATTAACATATATACCTCAGA+TGG | - | chr8.1:85956998-85957017 | None:intergenic | 25.0% |
| ! | CAAAAGTGACAATTTGATAA+CGG | + | chr8.1:85957242-85957261 | MS.gene39710:CDS | 25.0% |
| !!! | TAGAAGGATTAGTTCTTTAA+TGG | + | chr8.1:85956877-85956896 | MS.gene39710:CDS | 25.0% |
| AACTCCAAATTGAAATGTGT+AGG | + | chr8.1:85957095-85957114 | MS.gene39710:intron | 30.0% | |
| ACAGTTACCAATGATAGAAA+TGG | + | chr8.1:85957192-85957211 | MS.gene39710:CDS | 30.0% | |
| GATTCCATAAATGTCATCAA+TGG | - | chr8.1:85956459-85956478 | None:intergenic | 30.0% | |
| GCATCTTTATAAATTGGTAC+AGG | - | chr8.1:85957150-85957169 | None:intergenic | 30.0% | |
| TACCAATGATAGAAATGGAA+GGG | + | chr8.1:85957197-85957216 | MS.gene39710:CDS | 30.0% | |
| TGGTGATAATTGATACATCT+TGG | - | chr8.1:85956978-85956997 | None:intergenic | 30.0% | |
| TTACAAATGTGGATGATTGA+GGG | + | chr8.1:85957270-85957289 | MS.gene39710:CDS | 30.0% | |
| TTACCAATGATAGAAATGGA+AGG | + | chr8.1:85957196-85957215 | MS.gene39710:CDS | 30.0% | |
| TTTACAAATGTGGATGATTG+AGG | + | chr8.1:85957269-85957288 | MS.gene39710:CDS | 30.0% | |
| ! | ACAGAGTTTTTCTTCTTTGA+TGG | + | chr8.1:85956902-85956921 | MS.gene39710:CDS | 30.0% |
| ! | ACTTTTGTGCAATCTTTAGA+AGG | - | chr8.1:85957380-85957399 | None:intergenic | 30.0% |
| ! | TGAACCATTGATGACATTTA+TGG | + | chr8.1:85956452-85956471 | MS.gene39710:CDS | 30.0% |
| !! | CTTTTGTGCAATCTTTAGAA+GGG | - | chr8.1:85957379-85957398 | None:intergenic | 30.0% |
| ATCTTGGATGCCATGAATTT+GGG | - | chr8.1:85956962-85956981 | None:intergenic | 35.0% | |
| GTATCAATTATCACCATCTG+AGG | + | chr8.1:85956982-85957001 | MS.gene39710:CDS | 35.0% | |
| GTTACAACTATTGAATTGGC+TGG | + | chr8.1:85956375-85956394 | MS.gene39710:CDS | 35.0% | |
| TAACGGAGGATTTACAAATG+TGG | + | chr8.1:85957259-85957278 | MS.gene39710:CDS | 35.0% | |
| TACCCTTCCATTTCTATCAT+TGG | - | chr8.1:85957202-85957221 | None:intergenic | 35.0% | |
| TGAATCTCTTGTACCTGAAT+TGG | - | chr8.1:85956414-85956433 | None:intergenic | 35.0% | |
| TTCAGGTATCAATCCAATTC+AGG | + | chr8.1:85956398-85956417 | MS.gene39710:CDS | 35.0% | |
| !! | AAGTGACAATTTGATAACGG+AGG | + | chr8.1:85957245-85957264 | MS.gene39710:CDS | 35.0% |
| !!! | ACTGCAACTGAGATTTTTTG+AGG | - | chr8.1:85956546-85956565 | None:intergenic | 35.0% |
| !!! | CTGCAACTGAGATTTTTTGA+GGG | - | chr8.1:85956545-85956564 | None:intergenic | 35.0% |
| AAATTGGTACAGGTCTCACT+AGG | - | chr8.1:85957140-85957159 | None:intergenic | 40.0% | |
| AAGGAAAAGGTGATTCTTGG+TGG | + | chr8.1:85956489-85956508 | MS.gene39710:CDS | 40.0% | |
| AATTGGTACAGGTCTCACTA+GGG | - | chr8.1:85957139-85957158 | None:intergenic | 40.0% | |
| AGGAAAAGGTGATTCTTGGT+GGG | + | chr8.1:85956490-85956509 | MS.gene39710:CDS | 40.0% | |
| ATACCCAGTTGTTCTTCAAG+AGG | + | chr8.1:85956602-85956621 | MS.gene39710:CDS | 40.0% | |
| ATCACTTCCACCTTCTCAAA+TGG | - | chr8.1:85957303-85957322 | None:intergenic | 40.0% | |
| ATCTCTTCCTCCAAAGGAAA+AGG | + | chr8.1:85956476-85956495 | MS.gene39710:CDS | 40.0% | |
| ATTGGTTGGACCCAAATTCA+TGG | + | chr8.1:85956949-85956968 | MS.gene39710:CDS | 40.0% | |
| CATCTTGGATGCCATGAATT+TGG | - | chr8.1:85956963-85956982 | None:intergenic | 40.0% | |
| CCAAAGGAAAAGGTGATTCT+TGG | + | chr8.1:85956486-85956505 | MS.gene39710:CDS | 40.0% | |
| GATAGAGGATTCTGATCACA+TGG | + | chr8.1:85957320-85957339 | MS.gene39710:CDS | 40.0% | |
| GTACCTCTTGAAGAACAACT+GGG | - | chr8.1:85956608-85956627 | None:intergenic | 40.0% | |
| TATGGAATCTCTTCCTCCAA+AGG | + | chr8.1:85956470-85956489 | MS.gene39710:CDS | 40.0% | |
| TGTACCTCTTGAAGAACAAC+TGG | - | chr8.1:85956609-85956628 | None:intergenic | 40.0% | |
| ! | ACTATTGAATTGGCTGGTTC+AGG | + | chr8.1:85956381-85956400 | MS.gene39710:CDS | 40.0% |
| ! | AGAATCACCTTTTCCTTTGG+AGG | - | chr8.1:85956486-85956505 | None:intergenic | 40.0% |
| ! | CCAAGAATCACCTTTTCCTT+TGG | - | chr8.1:85956489-85956508 | None:intergenic | 40.0% |
| ! | CTTTTCCATAGCAACAGATG+TGG | - | chr8.1:85956520-85956539 | None:intergenic | 40.0% |
| ! | TTGTGCAATCTTTAGAAGGG+TGG | - | chr8.1:85957376-85957395 | None:intergenic | 40.0% |
| AAGTGGTCCATTTGAGAAGG+TGG | + | chr8.1:85957293-85957312 | MS.gene39710:CDS | 45.0% | |
| AGGGTGGAACTAAGCTTCTT+TGG | - | chr8.1:85957360-85957379 | None:intergenic | 45.0% | |
| ATGTGGATGATTGAGGGAAG+TGG | + | chr8.1:85957276-85957295 | MS.gene39710:CDS | 45.0% | |
| CAAACCTGCAACTGCTAGAT+TGG | + | chr8.1:85956931-85956950 | MS.gene39710:CDS | 45.0% | |
| CCATCATGTAGCAAGCTAGA+AGG | + | chr8.1:85956861-85956880 | MS.gene39710:intron | 45.0% | |
| GAAGAACAACTGGGTATGAG+AGG | - | chr8.1:85956599-85956618 | None:intergenic | 45.0% | |
| GGAAAAGGTGATTCTTGGTG+GGG | + | chr8.1:85956491-85956510 | MS.gene39710:CDS | 45.0% | |
| TCTAGCAGTTGCAGGTTTGT+TGG | - | chr8.1:85956930-85956949 | None:intergenic | 45.0% | |
| TCTCACTAGGGACAATGCAA+GGG | - | chr8.1:85957127-85957146 | None:intergenic | 45.0% | |
| TGAGAAGGTGGAAGTGATAG+AGG | + | chr8.1:85957305-85957324 | MS.gene39710:CDS | 45.0% | |
| ! | CTAGCAGTTGCAGGTTTGTT+GGG | - | chr8.1:85956929-85956948 | None:intergenic | 45.0% |
| !! | CCTTCTAGCTTGCTACATGA+TGG | - | chr8.1:85956864-85956883 | None:intergenic | 45.0% |
| CCAACCAATCTAGCAGTTGC+AGG | - | chr8.1:85956938-85956957 | None:intergenic | 50.0% | |
| CCTGCAACTGCTAGATTGGT+TGG | + | chr8.1:85956935-85956954 | MS.gene39710:CDS | 50.0% | |
| GGGAAGTGGTCCATTTGAGA+AGG | + | chr8.1:85957290-85957309 | MS.gene39710:CDS | 50.0% | |
| GGTGTCCACATCTGTTGCTA+TGG | + | chr8.1:85956512-85956531 | MS.gene39710:CDS | 50.0% | |
| GTCTCACTAGGGACAATGCA+AGG | - | chr8.1:85957128-85957147 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 85956351 | 85957404 | 85956351 | ID=MS.gene39710 |
| chr8.1 | mRNA | 85956351 | 85957404 | 85956351 | ID=MS.gene39710.t1;Parent=MS.gene39710 |
| chr8.1 | exon | 85956351 | 85956623 | 85956351 | ID=MS.gene39710.t1.exon1;Parent=MS.gene39710.t1 |
| chr8.1 | CDS | 85956351 | 85956623 | 85956351 | ID=cds.MS.gene39710.t1;Parent=MS.gene39710.t1 |
| chr8.1 | exon | 85956872 | 85957003 | 85956872 | ID=MS.gene39710.t1.exon2;Parent=MS.gene39710.t1 |
| chr8.1 | CDS | 85956872 | 85957003 | 85956872 | ID=cds.MS.gene39710.t1;Parent=MS.gene39710.t1 |
| chr8.1 | exon | 85957117 | 85957404 | 85957117 | ID=MS.gene39710.t1.exon3;Parent=MS.gene39710.t1 |
| chr8.1 | CDS | 85957117 | 85957404 | 85957117 | ID=cds.MS.gene39710.t1;Parent=MS.gene39710.t1 |
| Gene Sequence |
| Protein sequence |
