Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39827.t1 | XP_003617079.1 | 97.2 | 389 | 11 | 0 | 1 | 389 | 3 | 391 | 5.60E-221 | 776.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39827.t1 | Q9FH04 | 72.0 | 375 | 104 | 1 | 14 | 387 | 15 | 389 | 7.8e-163 | 574.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39827.t1 | G7K2X3 | 97.2 | 389 | 11 | 0 | 1 | 389 | 3 | 391 | 4.0e-221 | 776.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051171 | MS.gene39827 | 0.820056 | 8.39E-53 | -1.69E-46 |
| MS.gene051242 | MS.gene39827 | 0.819182 | 1.33E-52 | -1.69E-46 |
| MS.gene053330 | MS.gene39827 | 0.825558 | 4.39E-54 | -1.69E-46 |
| MS.gene056305 | MS.gene39827 | 0.849773 | 2.61E-60 | -1.69E-46 |
| MS.gene056633 | MS.gene39827 | 0.856194 | 3.79E-62 | -1.69E-46 |
| MS.gene056664 | MS.gene39827 | 0.80989 | 1.51E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene39827 | 0.844511 | 7.23E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39827 | MS.gene83309 | PPI |
| MS.gene39827 | MS.gene70145 | PPI |
| MS.gene39827 | MS.gene069804 | PPI |
| MS.gene39827 | MS.gene042841 | PPI |
| MS.gene39827 | MS.gene73688 | PPI |
| MS.gene39827 | MS.gene49741 | PPI |
| MS.gene030545 | MS.gene39827 | PPI |
| MS.gene39827 | MS.gene79768 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39827.t1 | MTR_5g087710 | 97.172 | 389 | 11 | 0 | 1 | 389 | 3 | 391 | 0.0 | 773 |
| MS.gene39827.t1 | MTR_3g079180 | 75.584 | 385 | 93 | 1 | 6 | 389 | 2 | 386 | 0.0 | 616 |
| MS.gene39827.t1 | MTR_3g099460 | 61.905 | 378 | 140 | 3 | 14 | 388 | 14 | 390 | 4.42e-165 | 468 |
| MS.gene39827.t1 | MTR_3g099460 | 60.847 | 378 | 137 | 4 | 14 | 388 | 14 | 383 | 1.73e-158 | 451 |
| MS.gene39827.t1 | MTR_3g079170 | 76.753 | 271 | 49 | 1 | 109 | 379 | 26 | 282 | 3.96e-153 | 433 |
| MS.gene39827.t1 | MTR_3g099460 | 61.920 | 323 | 121 | 2 | 67 | 388 | 6 | 327 | 1.69e-137 | 395 |
| MS.gene39827.t1 | MTR_1g069430 | 51.070 | 374 | 181 | 2 | 14 | 387 | 6 | 377 | 9.07e-134 | 388 |
| MS.gene39827.t1 | MTR_6g068930 | 50.262 | 382 | 184 | 4 | 8 | 389 | 2 | 377 | 3.58e-130 | 379 |
| MS.gene39827.t1 | MTR_7g099040 | 49.206 | 378 | 190 | 2 | 8 | 385 | 2 | 377 | 1.55e-127 | 372 |
| MS.gene39827.t1 | MTR_3g089940 | 45.812 | 382 | 203 | 4 | 9 | 389 | 2 | 380 | 1.65e-122 | 359 |
| MS.gene39827.t1 | MTR_3g089940 | 45.889 | 377 | 200 | 4 | 14 | 389 | 7 | 380 | 8.09e-122 | 357 |
| MS.gene39827.t1 | MTR_3g089977 | 46.133 | 375 | 198 | 4 | 14 | 387 | 7 | 378 | 1.54e-121 | 357 |
| MS.gene39827.t1 | MTR_3g089970 | 45.889 | 377 | 200 | 4 | 14 | 389 | 8 | 381 | 8.40e-121 | 355 |
| MS.gene39827.t1 | MTR_7g068330 | 47.927 | 386 | 193 | 5 | 8 | 387 | 2 | 385 | 1.20e-119 | 352 |
| MS.gene39827.t1 | MTR_3g099460 | 62.238 | 286 | 105 | 2 | 14 | 296 | 14 | 299 | 4.97e-118 | 346 |
| MS.gene39827.t1 | MTR_7g068320 | 47.884 | 378 | 191 | 5 | 14 | 387 | 18 | 393 | 6.09e-117 | 345 |
| MS.gene39827.t1 | MTR_3g099460 | 60.839 | 286 | 102 | 3 | 14 | 296 | 14 | 292 | 2.15e-111 | 329 |
| MS.gene39827.t1 | MTR_3g089940 | 45.322 | 342 | 183 | 4 | 9 | 349 | 2 | 340 | 7.00e-105 | 313 |
| MS.gene39827.t1 | MTR_3g089940 | 45.401 | 337 | 180 | 4 | 14 | 349 | 7 | 340 | 2.42e-104 | 312 |
| MS.gene39827.t1 | MTR_5g045710 | 44.211 | 380 | 203 | 7 | 10 | 387 | 2 | 374 | 3.86e-104 | 312 |
| MS.gene39827.t1 | MTR_0001s0660 | 44.032 | 377 | 203 | 5 | 10 | 385 | 2 | 371 | 1.22e-103 | 314 |
| MS.gene39827.t1 | MTR_5g045710 | 43.197 | 294 | 161 | 5 | 95 | 387 | 3 | 291 | 3.56e-76 | 238 |
| MS.gene39827.t1 | MTR_8g095220 | 31.234 | 381 | 243 | 12 | 15 | 385 | 51 | 422 | 5.95e-39 | 144 |
| MS.gene39827.t1 | MTR_8g095220 | 33.603 | 247 | 153 | 6 | 15 | 253 | 51 | 294 | 6.65e-28 | 112 |
| MS.gene39827.t1 | MTR_6g465010 | 25.507 | 345 | 218 | 11 | 42 | 378 | 23 | 336 | 4.33e-22 | 96.7 |
| MS.gene39827.t1 | MTR_6g466320 | 25.507 | 345 | 218 | 11 | 42 | 378 | 39 | 352 | 5.79e-22 | 96.3 |
| MS.gene39827.t1 | MTR_6g465010 | 25.507 | 345 | 218 | 11 | 42 | 378 | 39 | 352 | 5.79e-22 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39827.t1 | AT5G42250 | 69.923 | 389 | 115 | 2 | 1 | 387 | 1 | 389 | 0.0 | 574 |
| MS.gene39827.t1 | AT1G22430 | 59.640 | 389 | 153 | 4 | 3 | 389 | 2 | 388 | 1.43e-170 | 482 |
| MS.gene39827.t1 | AT1G22430 | 59.640 | 389 | 153 | 4 | 3 | 389 | 2 | 388 | 1.43e-170 | 482 |
| MS.gene39827.t1 | AT4G22110 | 60.614 | 391 | 150 | 4 | 1 | 389 | 1 | 389 | 1.17e-169 | 479 |
| MS.gene39827.t1 | AT4G22110 | 60.614 | 391 | 150 | 4 | 1 | 389 | 1 | 389 | 1.17e-169 | 479 |
| MS.gene39827.t1 | AT1G22440 | 60.519 | 385 | 148 | 4 | 7 | 389 | 4 | 386 | 3.37e-168 | 476 |
| MS.gene39827.t1 | AT5G43940 | 51.075 | 372 | 180 | 2 | 14 | 385 | 6 | 375 | 5.07e-136 | 394 |
| MS.gene39827.t1 | AT5G43940 | 50.546 | 366 | 179 | 2 | 20 | 385 | 24 | 387 | 3.78e-132 | 384 |
| MS.gene39827.t1 | AT5G24760 | 50.000 | 386 | 185 | 5 | 6 | 389 | 2 | 381 | 4.09e-132 | 384 |
| MS.gene39827.t1 | AT1G22430 | 58.675 | 317 | 122 | 5 | 3 | 316 | 2 | 312 | 3.38e-127 | 369 |
| MS.gene39827.t1 | AT1G64710 | 48.800 | 375 | 187 | 5 | 16 | 387 | 8 | 380 | 1.00e-124 | 365 |
| MS.gene39827.t1 | AT1G77120 | 47.594 | 374 | 194 | 2 | 14 | 387 | 6 | 377 | 1.04e-124 | 365 |
| MS.gene39827.t1 | AT5G24760 | 50.279 | 358 | 172 | 4 | 32 | 389 | 1 | 352 | 1.30e-123 | 361 |
| MS.gene39827.t1 | AT5G24760 | 50.279 | 358 | 172 | 4 | 32 | 389 | 1 | 352 | 1.30e-123 | 361 |
| MS.gene39827.t1 | AT1G32780 | 48.438 | 384 | 186 | 6 | 16 | 389 | 9 | 390 | 1.94e-118 | 349 |
| MS.gene39827.t1 | AT1G64710 | 48.189 | 359 | 181 | 5 | 32 | 387 | 1 | 357 | 4.39e-118 | 347 |
| MS.gene39827.t1 | AT1G22430 | 58.889 | 270 | 108 | 3 | 3 | 270 | 2 | 270 | 1.01e-111 | 328 |
| MS.gene39827.t1 | AT1G22430 | 58.889 | 270 | 108 | 3 | 3 | 270 | 2 | 270 | 1.01e-111 | 328 |
| MS.gene39827.t1 | AT4G22110 | 61.798 | 267 | 99 | 3 | 1 | 265 | 1 | 266 | 2.63e-111 | 327 |
| MS.gene39827.t1 | AT1G64710 | 47.727 | 308 | 157 | 4 | 82 | 387 | 6 | 311 | 9.83e-99 | 296 |
| MS.gene39827.t1 | AT5G24760 | 49.630 | 270 | 133 | 3 | 120 | 389 | 1 | 267 | 3.10e-87 | 265 |
| MS.gene39827.t1 | AT5G63620 | 28.533 | 368 | 249 | 8 | 19 | 379 | 57 | 417 | 1.72e-38 | 143 |
| MS.gene39827.t1 | AT5G63620 | 28.533 | 368 | 249 | 8 | 19 | 379 | 57 | 417 | 3.15e-38 | 142 |
| MS.gene39827.t1 | AT5G63620 | 29.461 | 241 | 163 | 3 | 19 | 253 | 57 | 296 | 1.36e-26 | 108 |
| MS.gene39827.t1 | AT5G51970 | 24.930 | 357 | 218 | 12 | 36 | 378 | 34 | 354 | 2.51e-20 | 91.7 |
| MS.gene39827.t1 | AT5G51970 | 24.930 | 357 | 218 | 12 | 36 | 378 | 34 | 354 | 2.51e-20 | 91.7 |
| MS.gene39827.t1 | AT4G37990 | 23.565 | 331 | 212 | 9 | 44 | 364 | 35 | 334 | 5.76e-11 | 63.9 |
| MS.gene39827.t1 | AT4G37970 | 28.571 | 147 | 88 | 3 | 44 | 188 | 40 | 171 | 8.43e-11 | 62.4 |
| MS.gene39827.t1 | AT4G37970 | 28.571 | 147 | 88 | 3 | 44 | 188 | 40 | 171 | 9.26e-11 | 62.4 |
Find 79 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACACCTTTACATCTTA+TGG | 0.160696 | 5.4:+68963789 | None:intergenic |
| TATTTATCAGGAACTCAATT+TGG | 0.180490 | 5.4:-68960788 | MS.gene39827:intron |
| ACTCTTATGGGGTCTATATT+TGG | 0.200744 | 5.4:-68961007 | MS.gene39827:CDS |
| TGTGGAGCAACTAGGATTAT+AGG | 0.276027 | 5.4:-68961814 | MS.gene39827:CDS |
| CTTTATTCAGCGAAGAAGTT+TGG | 0.298247 | 5.4:-68961639 | MS.gene39827:intron |
| CACACACCTTTACATCTTAT+GGG | 0.302890 | 5.4:+68963790 | None:intergenic |
| ACTAGATTCACTGATCTAAA+TGG | 0.304247 | 5.4:-68962522 | MS.gene39827:CDS |
| CTTTGTAAATCCTGGAGAAT+TGG | 0.307283 | 5.4:-68961607 | MS.gene39827:CDS |
| TAAGAGTCTTCCCTTGAAAA+AGG | 0.321797 | 5.4:+68961023 | None:intergenic |
| CCATCACTTGTTGCTGCAGC+AGG | 0.349672 | 5.4:+68963820 | None:intergenic |
| TTTCAAGGGAAGACTCTTAT+GGG | 0.369580 | 5.4:-68961019 | MS.gene39827:CDS |
| ATCCAACAATTCCTCCCAAC+AGG | 0.379793 | 5.4:-68962419 | MS.gene39827:CDS |
| CTTTACATCTTATGGGTTGT+TGG | 0.379879 | 5.4:+68963797 | None:intergenic |
| CATAGTTATCCCAATCTTCA+TGG | 0.380845 | 5.4:-68962643 | MS.gene39827:CDS |
| AGTGTCTTCGGTGTGTGATT+TGG | 0.391376 | 5.4:-68960696 | MS.gene39827:CDS |
| GCCCTGTTGGGAGGAATTGT+TGG | 0.392172 | 5.4:+68962417 | None:intergenic |
| CTCAGTTGTGGTGTATCAAC+AGG | 0.395594 | 5.4:-68962387 | MS.gene39827:intron |
| TCACAATCAGCCATGAAGAT+TGG | 0.401526 | 5.4:+68962633 | None:intergenic |
| GAAAACAGCAAATGTTGAAC+CGG | 0.406203 | 5.4:-68962259 | MS.gene39827:CDS |
| TGGATCAATCTTGAGTAGAT+TGG | 0.410420 | 5.4:+68962437 | None:intergenic |
| CACAATCAGCCATGAAGATT+GGG | 0.418681 | 5.4:+68962634 | None:intergenic |
| TACTGGGTCATGAGGCAATT+GGG | 0.421956 | 5.4:-68963225 | MS.gene39827:intron |
| GCTGAAGGAGCTAGACTTTG+TGG | 0.441563 | 5.4:-68961832 | MS.gene39827:CDS |
| GTCACAGACTTTGTAAATCC+TGG | 0.452717 | 5.4:-68961615 | MS.gene39827:CDS |
| GGAAAACAAATCTGTGAGTC+AGG | 0.454117 | 5.4:-68961586 | MS.gene39827:CDS |
| ATCCAAGGTTTAATATCAAA+AGG | 0.456805 | 5.4:+68962561 | None:intergenic |
| AACTAGAGACAAATATGAAA+TGG | 0.460302 | 5.4:+68962487 | None:intergenic |
| CTGAGGAGGCATGCCCTGTT+GGG | 0.462513 | 5.4:+68962405 | None:intergenic |
| GCCTCATGACCCAGTATCCT+TGG | 0.463153 | 5.4:+68963232 | None:intergenic |
| TGCAGCAGGTTTATCTTCCA+TGG | 0.473298 | 5.4:+68963834 | None:intergenic |
| TCAATAATCAGTGGCTCACC+TGG | 0.476109 | 5.4:+68963507 | None:intergenic |
| TGACAAAAGGAGAGTGTCTT+CGG | 0.477160 | 5.4:-68960708 | MS.gene39827:CDS |
| ATGTGTTGGTATGGCATCAT+TGG | 0.482347 | 5.4:-68961520 | MS.gene39827:CDS |
| GATTATTGAGGAGATCTTTG+TGG | 0.489087 | 5.4:-68963493 | MS.gene39827:CDS |
| CTAGACTTTGTGGAGCAACT+AGG | 0.495288 | 5.4:-68961822 | MS.gene39827:CDS |
| TTGATACTCAACTTAGATCC+TGG | 0.495669 | 5.4:+68961058 | None:intergenic |
| CTAGCTTCATGTGGCATTGG+TGG | 0.495830 | 5.4:+68963468 | None:intergenic |
| TTGCTTTGAATGTGTTGGTA+TGG | 0.503086 | 5.4:-68961529 | MS.gene39827:CDS |
| ACTGAGGAGGCATGCCCTGT+TGG | 0.511132 | 5.4:+68962404 | None:intergenic |
| AAGAATGGGTACATCAGACT+TGG | 0.513039 | 5.4:+68960973 | None:intergenic |
| CTTATGGGGTCTATATTTGG+AGG | 0.514741 | 5.4:-68961004 | MS.gene39827:CDS |
| CAACAACCCATAAGATGTAA+AGG | 0.516393 | 5.4:-68963796 | MS.gene39827:intron |
| AGCATATGCTTCATGTAGAA+AGG | 0.522535 | 5.4:-68961490 | MS.gene39827:intron |
| GAAGTAACAGAAGTTACAAA+GGG | 0.527117 | 5.4:-68962669 | MS.gene39827:CDS |
| ATCCTAGCTTCATGTGGCAT+TGG | 0.528211 | 5.4:+68963465 | None:intergenic |
| ATACTGGGTCATGAGGCAAT+TGG | 0.530290 | 5.4:-68963226 | MS.gene39827:CDS |
| GATTATTGCTTTGAATGTGT+TGG | 0.539967 | 5.4:-68961534 | MS.gene39827:CDS |
| GGAAGTAACAGAAGTTACAA+AGG | 0.541099 | 5.4:-68962670 | MS.gene39827:CDS |
| AGGGCATGCCTCCTCAGTTG+TGG | 0.551435 | 5.4:-68962399 | MS.gene39827:CDS |
| ATGTTAGGAGTGGACAAGCC+AGG | 0.552820 | 5.4:-68961076 | MS.gene39827:CDS |
| ATTGTTTCCTAGGTGGCTGA+AGG | 0.554628 | 5.4:-68961847 | MS.gene39827:intron |
| ACTCGGATGTATTGGATTAG+CGG | 0.554730 | 5.4:-68962214 | MS.gene39827:intron |
| TCCAAGGATACTGGGTCATG+AGG | 0.566290 | 5.4:-68963233 | MS.gene39827:CDS |
| GTTATCATAGAGATGACTGA+TGG | 0.568363 | 5.4:-68961564 | MS.gene39827:CDS |
| GCTGCGGTTTGTCGCAAACC+AGG | 0.570156 | 5.4:-68963525 | MS.gene39827:CDS |
| CACCAATGCCACATGAAGCT+AGG | 0.581082 | 5.4:-68963467 | MS.gene39827:CDS |
| TCTTCGGTGTGTGATTTGGA+TGG | 0.582969 | 5.4:-68960692 | MS.gene39827:CDS |
| AAAACAGCAAATGTTGAACC+GGG | 0.583487 | 5.4:-68962258 | MS.gene39827:CDS |
| CCTGCTGCAGCAACAAGTGA+TGG | 0.586016 | 5.4:-68963820 | MS.gene39827:CDS |
| AGGAGGCATGCCCTGTTGGG+AGG | 0.588882 | 5.4:+68962408 | None:intergenic |
| CAAAAGGAAACTTTGAACAA+AGG | 0.590036 | 5.4:+68962577 | None:intergenic |
| TCTTAGGGGTAGGTGCTGCA+TGG | 0.593039 | 5.4:-68962281 | MS.gene39827:intron |
| AGAATGGGTACATCAGACTT+GGG | 0.595366 | 5.4:+68960974 | None:intergenic |
| AGCAACTAGGATTATAGGTG+TGG | 0.598387 | 5.4:-68961809 | MS.gene39827:CDS |
| TCCAGGGTTGTGGAAAGTGT+TGG | 0.599735 | 5.4:-68962696 | MS.gene39827:intron |
| GATATCACTGTGACAAAGAG+AGG | 0.603012 | 5.4:+68963428 | None:intergenic |
| AGGTGAGCCACTGATTATTG+AGG | 0.608296 | 5.4:-68963505 | MS.gene39827:CDS |
| TTCAAGGGAAGACTCTTATG+GGG | 0.612341 | 5.4:-68961018 | MS.gene39827:CDS |
| GGTTGTGGAAAGTGTTGGAG+AGG | 0.628245 | 5.4:-68962691 | MS.gene39827:CDS |
| AAAATAGCTACTGTCGACCC+CGG | 0.636859 | 5.4:+68962240 | None:intergenic |
| TCCAACAATTCCTCCCAACA+GGG | 0.637346 | 5.4:-68962418 | MS.gene39827:CDS |
| ATCATAGAGATGACTGATGG+AGG | 0.637658 | 5.4:-68961561 | MS.gene39827:CDS |
| AAGATCTCCTCAATAATCAG+TGG | 0.639801 | 5.4:+68963498 | None:intergenic |
| TTGATACACCACAACTGAGG+AGG | 0.646650 | 5.4:+68962391 | None:intergenic |
| ATTTAGATCAGTGAATCTAG+TGG | 0.650022 | 5.4:+68962524 | None:intergenic |
| GTATCATATCTAAGCATCCA+AGG | 0.653021 | 5.4:+68962546 | None:intergenic |
| ATACGAATCCTAGCTTCATG+TGG | 0.667924 | 5.4:+68963459 | None:intergenic |
| CTGTTGATACACCACAACTG+AGG | 0.718420 | 5.4:+68962388 | None:intergenic |
| AAACAGCAAATGTTGAACCG+GGG | 0.725303 | 5.4:-68962257 | MS.gene39827:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAGATAAAATATAAT+TGG | + | chr5.4:68962528-68962547 | None:intergenic | 10.0% |
| !! | TATTATCAAATTAAATTGAA+TGG | + | chr5.4:68960856-68960875 | None:intergenic | 10.0% |
| !!! | CTAATTTTTTAACTTTTTTT+TGG | - | chr5.4:68961495-68961514 | MS.gene39827:CDS | 10.0% |
| !!! | GAAACTTTTTTTTTTTTTTT+TGG | - | chr5.4:68960899-68960918 | MS.gene39827:intron | 10.0% |
| !!! | TTTTTTTTTTTTACTTTTGA+AGG | - | chr5.4:68961244-68961263 | MS.gene39827:intron | 10.0% |
| !! | ATACAAATTAATAAAATGCA+TGG | + | chr5.4:68961326-68961345 | None:intergenic | 15.0% |
| !!! | ATGTAATAGTTTTTTTTTGA+AGG | - | chr5.4:68960808-68960827 | MS.gene39827:intron | 15.0% |
| !! | ATATTTCTCATTTCCTAATT+AGG | - | chr5.4:68961366-68961385 | MS.gene39827:intron | 20.0% |
| !! | TATAAAATGTTAGCAAAAGA+GGG | + | chr5.4:68963637-68963656 | None:intergenic | 20.0% |
| !! | TGTAATGTTTATAATGTACT+TGG | - | chr5.4:68961650-68961669 | MS.gene39827:intron | 20.0% |
| !! | TTATAAAATGTTAGCAAAAG+AGG | + | chr5.4:68963638-68963657 | None:intergenic | 20.0% |
| !! | TTATCAAACATCAATTCTTA+GGG | - | chr5.4:68962220-68962239 | MS.gene39827:CDS | 20.0% |
| !! | TTTATCAAACATCAATTCTT+AGG | - | chr5.4:68962219-68962238 | MS.gene39827:CDS | 20.0% |
| !!! | AATTAATTTTTATGTGATCC+AGG | - | chr5.4:68961803-68961822 | MS.gene39827:CDS | 20.0% |
| !!! | ATTAATTTTTATGTGATCCA+GGG | - | chr5.4:68961804-68961823 | MS.gene39827:CDS | 20.0% |
| !!! | CTTTATTTTAACCATGTTAT+TGG | - | chr5.4:68963102-68963121 | MS.gene39827:intron | 20.0% |
| !!! | TAGTAATGTCAACAATTTTT+AGG | - | chr5.4:68963688-68963707 | MS.gene39827:intron | 20.0% |
| !!! | TTACCAATTTCAAATTTTTC+TGG | + | chr5.4:68962741-68962760 | None:intergenic | 20.0% |
| !!! | TTTTTCTCCAATTATTTATC+AGG | - | chr5.4:68963716-68963735 | MS.gene39827:intron | 20.0% |
| ! | AAAAACAATTATGTTAGGAG+TGG | - | chr5.4:68963430-68963449 | MS.gene39827:CDS | 25.0% |
| ! | AACTAGAGACAAATATGAAA+TGG | + | chr5.4:68962032-68962051 | None:intergenic | 25.0% |
| ! | ATAAAATGTTAGCAAAAGAG+GGG | + | chr5.4:68963636-68963655 | None:intergenic | 25.0% |
| ! | ATCCAAGGTTTAATATCAAA+AGG | + | chr5.4:68961958-68961977 | None:intergenic | 25.0% |
| ! | ATGTAGCGTTTAAAAAGAAT+GGG | + | chr5.4:68963560-68963579 | None:intergenic | 25.0% |
| ! | CAAAACGAAAACATAAACTA+AGG | + | chr5.4:68962338-68962357 | None:intergenic | 25.0% |
| ! | TATCAAACATCAATTCTTAG+GGG | - | chr5.4:68962221-68962240 | MS.gene39827:CDS | 25.0% |
| ! | TATTTATCAGGAACTCAATT+TGG | - | chr5.4:68963728-68963747 | MS.gene39827:intron | 25.0% |
| ! | TTGAGTTCCTGATAAATAAT+TGG | + | chr5.4:68963726-68963745 | None:intergenic | 25.0% |
| ! | TTGTAATTGAATTGTTTCCT+AGG | - | chr5.4:68962659-68962678 | MS.gene39827:CDS | 25.0% |
| ! | TTGTGGATGAAAAAAAAATG+TGG | + | chr5.4:68963218-68963237 | None:intergenic | 25.0% |
| ! | TTTAGCATACAAAACTACAA+AGG | + | chr5.4:68962632-68962651 | None:intergenic | 25.0% |
| !! | AAGCCAGAAAAATTTGAAAT+TGG | - | chr5.4:68962735-68962754 | MS.gene39827:intron | 25.0% |
| !! | ATGTTTTCGTTTTGTAGTTT+GGG | - | chr5.4:68962344-68962363 | MS.gene39827:intron | 25.0% |
| !! | ATTTAGTTCGGATTGTTAAA+CGG | + | chr5.4:68961715-68961734 | None:intergenic | 25.0% |
| !! | TATGTTTTCGTTTTGTAGTT+TGG | - | chr5.4:68962343-68962362 | MS.gene39827:intron | 25.0% |
| !! | TTCCTTTTGATATTAAACCT+TGG | - | chr5.4:68961953-68961972 | MS.gene39827:intron | 25.0% |
| !!! | AAAATTGGTGTTTTGATTTC+AGG | - | chr5.4:68963400-68963419 | MS.gene39827:intron | 25.0% |
| !!! | AAATTGGTGTTTTGATTTCA+GGG | - | chr5.4:68963401-68963420 | MS.gene39827:intron | 25.0% |
| !!! | AGTTATGTTTTAATGAGTCA+TGG | + | chr5.4:68960762-68960781 | None:intergenic | 25.0% |
| !!! | GTTATGTTTTAATGAGTCAT+GGG | + | chr5.4:68960761-68960780 | None:intergenic | 25.0% |
| !!! | TATCATTTTTTGGAAAATGC+AGG | - | chr5.4:68961107-68961126 | MS.gene39827:intron | 25.0% |
| AAACTTCTTCGCTGAATAAA+GGG | + | chr5.4:68962878-68962897 | None:intergenic | 30.0% | |
| AATATCGCGTTAAACAGAAT+TGG | + | chr5.4:68961628-68961647 | None:intergenic | 30.0% | |
| ACAATCCGAACTAAATATGT+TGG | - | chr5.4:68961719-68961738 | MS.gene39827:intron | 30.0% | |
| ACTAGATTCACTGATCTAAA+TGG | - | chr5.4:68961994-68962013 | MS.gene39827:intron | 30.0% | |
| ACTTATTTGAGCTTCTCTAT+TGG | - | chr5.4:68962380-68962399 | MS.gene39827:intron | 30.0% | |
| AGATTAGTAATCGGCAAAAT+CGG | + | chr5.4:68963141-68963160 | None:intergenic | 30.0% | |
| ATAGAGAAGCTCAAATAAGT+CGG | + | chr5.4:68962380-68962399 | None:intergenic | 30.0% | |
| ATTTAGATCAGTGAATCTAG+TGG | + | chr5.4:68961995-68962014 | None:intergenic | 30.0% | |
| CAAAAGGAAACTTTGAACAA+AGG | + | chr5.4:68961942-68961961 | None:intergenic | 30.0% | |
| CATGTAGCGTTTAAAAAGAA+TGG | + | chr5.4:68963561-68963580 | None:intergenic | 30.0% | |
| CTCATTTCCTAATTAGGTAA+AGG | - | chr5.4:68961372-68961391 | MS.gene39827:intron | 30.0% | |
| GAAAAAAAAATGTGGTTGGA+AGG | + | chr5.4:68963210-68963229 | None:intergenic | 30.0% | |
| GAAGTAACAGAAGTTACAAA+GGG | - | chr5.4:68961847-68961866 | MS.gene39827:intron | 30.0% | |
| GGATGAAAAAAAAATGTGGT+TGG | + | chr5.4:68963214-68963233 | None:intergenic | 30.0% | |
| GTTAGCTCAAATAATGAAAG+TGG | + | chr5.4:68961590-68961609 | None:intergenic | 30.0% | |
| GTTGTTCTCATAGACTATTA+TGG | + | chr5.4:68962483-68962502 | None:intergenic | 30.0% | |
| TAATTGAATTGTTTCCTAGG+TGG | - | chr5.4:68962662-68962681 | MS.gene39827:CDS | 30.0% | |
| TGAGACCAACATATTTAGTT+CGG | + | chr5.4:68961727-68961746 | None:intergenic | 30.0% | |
| TGGGGAAAAACAATTATGTT+AGG | - | chr5.4:68963425-68963444 | MS.gene39827:CDS | 30.0% | |
| TTGCACACAAATGAAGAATA+TGG | + | chr5.4:68963331-68963350 | None:intergenic | 30.0% | |
| TTTCCTAATTAGGTAAAGGA+AGG | - | chr5.4:68961376-68961395 | MS.gene39827:intron | 30.0% | |
| ! | AAAACTACAAAGGTTTTGCT+TGG | + | chr5.4:68962622-68962641 | None:intergenic | 30.0% |
| ! | ATTTGCAAATTTTGTAGCTG+CGG | - | chr5.4:68960975-68960994 | MS.gene39827:CDS | 30.0% |
| ! | CATTCTTTTTAAACGCTACA+TGG | - | chr5.4:68963559-68963578 | MS.gene39827:intron | 30.0% |
| ! | GATTATTGCTTTGAATGTGT+TGG | - | chr5.4:68962982-68963001 | MS.gene39827:intron | 30.0% |
| ! | TACTTGTTGAAAGAATGGAT+TGG | - | chr5.4:68963377-68963396 | MS.gene39827:intron | 30.0% |
| !! | GAAAGAATGGATTGGAAAAT+TGG | - | chr5.4:68963385-68963404 | MS.gene39827:intron | 30.0% |
| !! | TCAAAAATTGGTAACGATGA+AGG | + | chr5.4:68961679-68961698 | None:intergenic | 30.0% |
| !!! | GCTTTTGATTTGTTGACAAA+AGG | - | chr5.4:68963795-68963814 | MS.gene39827:intron | 30.0% |
| !!! | GTCACAGTGATATCATTTTT+TGG | - | chr5.4:68961097-68961116 | MS.gene39827:CDS | 30.0% |
| !!! | TAGTTTTAGTGAGTATACTG+TGG | - | chr5.4:68962047-68962066 | MS.gene39827:intron | 30.0% |
| !!! | TTTTTTTCATCCACAATGCT+TGG | - | chr5.4:68963222-68963241 | MS.gene39827:intron | 30.0% |
| AAAACAGCAAATGTTGAACC+GGG | - | chr5.4:68962258-68962277 | MS.gene39827:CDS | 35.0% | |
| AAACATCAATTCTTAGGGGT+AGG | - | chr5.4:68962225-68962244 | MS.gene39827:CDS | 35.0% | |
| AACTTCTTCGCTGAATAAAG+GGG | + | chr5.4:68962877-68962896 | None:intergenic | 35.0% | |
| AAGATCTCCTCAATAATCAG+TGG | + | chr5.4:68961021-68961040 | None:intergenic | 35.0% | |
| ACACACACCTTTACATCTTA+TGG | + | chr5.4:68960730-68960749 | None:intergenic | 35.0% | |
| ACTCTTATGGGGTCTATATT+TGG | - | chr5.4:68963509-68963528 | MS.gene39827:CDS | 35.0% | |
| AGCATATGCTTCATGTAGAA+AGG | - | chr5.4:68963026-68963045 | MS.gene39827:intron | 35.0% | |
| AGTATCCTTGGAAAAATTGC+AGG | + | chr5.4:68961275-68961294 | None:intergenic | 35.0% | |
| AGTTGGCAGAGATTAGTAAT+CGG | + | chr5.4:68963150-68963169 | None:intergenic | 35.0% | |
| CAAACTTCTTCGCTGAATAA+AGG | + | chr5.4:68962879-68962898 | None:intergenic | 35.0% | |
| CAACAACCCATAAGATGTAA+AGG | - | chr5.4:68960720-68960739 | MS.gene39827:CDS | 35.0% | |
| CACACACCTTTACATCTTAT+GGG | + | chr5.4:68960729-68960748 | None:intergenic | 35.0% | |
| CATAGTTATCCCAATCTTCA+TGG | - | chr5.4:68961873-68961892 | MS.gene39827:intron | 35.0% | |
| CTTCCTTCCTTTACCTAATT+AGG | + | chr5.4:68961382-68961401 | None:intergenic | 35.0% | |
| CTTTATTCAGCGAAGAAGTT+TGG | - | chr5.4:68962877-68962896 | MS.gene39827:intron | 35.0% | |
| CTTTGTAAATCCTGGAGAAT+TGG | - | chr5.4:68962909-68962928 | MS.gene39827:intron | 35.0% | |
| GAAAACAGCAAATGTTGAAC+CGG | - | chr5.4:68962257-68962276 | MS.gene39827:CDS | 35.0% | |
| GATACTTTGCACCAATAACA+TGG | + | chr5.4:68963116-68963135 | None:intergenic | 35.0% | |
| GATTATTGAGGAGATCTTTG+TGG | - | chr5.4:68961023-68961042 | MS.gene39827:CDS | 35.0% | |
| GGAAGTAACAGAAGTTACAA+AGG | - | chr5.4:68961846-68961865 | MS.gene39827:intron | 35.0% | |
| GTATCATATCTAAGCATCCA+AGG | + | chr5.4:68961973-68961992 | None:intergenic | 35.0% | |
| GTTATCATAGAGATGACTGA+TGG | - | chr5.4:68962952-68962971 | MS.gene39827:intron | 35.0% | |
| TAAGAGTCTTCCCTTGAAAA+AGG | + | chr5.4:68963496-68963515 | None:intergenic | 35.0% | |
| TCAACAGGTATGCAAATTCA+AGG | - | chr5.4:68962144-68962163 | MS.gene39827:intron | 35.0% | |
| TGGATCAATCTTGAGTAGAT+TGG | + | chr5.4:68962082-68962101 | None:intergenic | 35.0% | |
| TTGATACTCAACTTAGATCC+TGG | + | chr5.4:68963461-68963480 | None:intergenic | 35.0% | |
| TTTATTCTACCCTGTTTGTG+TGG | - | chr5.4:68961408-68961427 | MS.gene39827:intron | 35.0% | |
| TTTCAAGGGAAGACTCTTAT+GGG | - | chr5.4:68963497-68963516 | MS.gene39827:CDS | 35.0% | |
| ! | CTGCATACTTGTTGAAAGAA+TGG | - | chr5.4:68963372-68963391 | MS.gene39827:intron | 35.0% |
| ! | CTTTACATCTTATGGGTTGT+TGG | + | chr5.4:68960722-68960741 | None:intergenic | 35.0% |
| ! | GCAATTTTTCCAAGGATACT+GGG | - | chr5.4:68961275-68961294 | MS.gene39827:intron | 35.0% |
| ! | GGATGATTTTGTTACACATG+AGG | - | chr5.4:68963749-68963768 | MS.gene39827:intron | 35.0% |
| ! | TGATTTTGTTACACATGAGG+TGG | - | chr5.4:68963752-68963771 | MS.gene39827:intron | 35.0% |
| ! | TGCAATTTTTCCAAGGATAC+TGG | - | chr5.4:68961274-68961293 | MS.gene39827:intron | 35.0% |
| ! | TTGCTTTGAATGTGTTGGTA+TGG | - | chr5.4:68962987-68963006 | MS.gene39827:intron | 35.0% |
| ! | TTTTAAACGCTACATGGACA+AGG | - | chr5.4:68963565-68963584 | MS.gene39827:intron | 35.0% |
| !! | ATTTTTGGACTCGGATGTAT+TGG | - | chr5.4:68962294-68962313 | MS.gene39827:intron | 35.0% |
| !! | GATTTGTTTTCCAATTCTCC+AGG | + | chr5.4:68962922-68962941 | None:intergenic | 35.0% |
| !! | TTTTCAAGGGAAGACTCTTA+TGG | - | chr5.4:68963496-68963515 | MS.gene39827:CDS | 35.0% |
| !!! | ACAGTAGCTATTTTTGGACT+CGG | - | chr5.4:68962285-68962304 | MS.gene39827:intron | 35.0% |
| !!! | AGTACTGATGTCCTTTTTCA+AGG | - | chr5.4:68963482-68963501 | MS.gene39827:CDS | 35.0% |
| !!! | GTACTGATGTCCTTTTTCAA+GGG | - | chr5.4:68963483-68963502 | MS.gene39827:CDS | 35.0% |
| AAACAGCAAATGTTGAACCG+GGG | - | chr5.4:68962259-68962278 | MS.gene39827:CDS | 40.0% | |
| AAGAATGGGTACATCAGACT+TGG | + | chr5.4:68963546-68963565 | None:intergenic | 40.0% | |
| AGAATGGGTACATCAGACTT+GGG | + | chr5.4:68963545-68963564 | None:intergenic | 40.0% | |
| AGCAACTAGGATTATAGGTG+TGG | - | chr5.4:68962707-68962726 | MS.gene39827:intron | 40.0% | |
| AGTGTATGACCACACAAACA+GGG | + | chr5.4:68961420-68961439 | None:intergenic | 40.0% | |
| ATACGAATCCTAGCTTCATG+TGG | + | chr5.4:68961060-68961079 | None:intergenic | 40.0% | |
| ATCATAGAGATGACTGATGG+AGG | - | chr5.4:68962955-68962974 | MS.gene39827:intron | 40.0% | |
| ATCCTTGGAAAAATTGCAGG+AGG | + | chr5.4:68961272-68961291 | None:intergenic | 40.0% | |
| CACAATCAGCCATGAAGATT+GGG | + | chr5.4:68961885-68961904 | None:intergenic | 40.0% | |
| CTCACATTGCCAAAGTTCTT+AGG | - | chr5.4:68961541-68961560 | MS.gene39827:CDS | 40.0% | |
| CTTATGGGGTCTATATTTGG+AGG | - | chr5.4:68963512-68963531 | MS.gene39827:CDS | 40.0% | |
| CTTCGCTCACTCTCAAAAAT+TGG | + | chr5.4:68961691-68961710 | None:intergenic | 40.0% | |
| GATATCACTGTGACAAAGAG+AGG | + | chr5.4:68961091-68961110 | None:intergenic | 40.0% | |
| GGAAAACAAATCTGTGAGTC+AGG | - | chr5.4:68962930-68962949 | MS.gene39827:intron | 40.0% | |
| GTCACAGACTTTGTAAATCC+TGG | - | chr5.4:68962901-68962920 | MS.gene39827:intron | 40.0% | |
| TCAAATAAGTCGGTCCAAAC+AGG | + | chr5.4:68962370-68962389 | None:intergenic | 40.0% | |
| TCACAATCAGCCATGAAGAT+TGG | + | chr5.4:68961886-68961905 | None:intergenic | 40.0% | |
| TGGAAGGATAGACTCCATAA+GGG | + | chr5.4:68963194-68963213 | None:intergenic | 40.0% | |
| TGTGGAGCAACTAGGATTAT+AGG | - | chr5.4:68962702-68962721 | MS.gene39827:intron | 40.0% | |
| TTCAAGGGAAGACTCTTATG+GGG | - | chr5.4:68963498-68963517 | MS.gene39827:CDS | 40.0% | |
| TTGGAAGGATAGACTCCATA+AGG | + | chr5.4:68963195-68963214 | None:intergenic | 40.0% | |
| ! | ACTCGGATGTATTGGATTAG+CGG | - | chr5.4:68962302-68962321 | MS.gene39827:intron | 40.0% |
| ! | ATGTGTTGGTATGGCATCAT+TGG | - | chr5.4:68962996-68963015 | MS.gene39827:intron | 40.0% |
| ! | TTTTATGTGATCCAGGGTTG+TGG | - | chr5.4:68961810-68961829 | MS.gene39827:CDS | 40.0% |
| ! | TTTTGTAGTTTGGGCCTGTT+TGG | - | chr5.4:68962353-68962372 | MS.gene39827:intron | 40.0% |
| !! | GATGTATTGGATTAGCGGTA+TGG | - | chr5.4:68962307-68962326 | MS.gene39827:intron | 40.0% |
| !! | TGACAAAAGGAGAGTGTCTT+CGG | - | chr5.4:68963808-68963827 | MS.gene39827:CDS | 40.0% |
| !!! | GGTGTTTTGATTTCAGGGTT+GGG | - | chr5.4:68963406-68963425 | MS.gene39827:intron | 40.0% |
| !!! | GTGTTTTGATTTCAGGGTTG+GGG | - | chr5.4:68963407-68963426 | MS.gene39827:intron | 40.0% |
| !!! | TGGTGTTTTGATTTCAGGGT+TGG | - | chr5.4:68963405-68963424 | MS.gene39827:intron | 40.0% |
| AAAATAGCTACTGTCGACCC+CGG | + | chr5.4:68962279-68962298 | None:intergenic | 45.0% | |
| AAGGATAGACTCCATAAGGG+TGG | + | chr5.4:68963191-68963210 | None:intergenic | 45.0% | |
| ATACTGGGTCATGAGGCAAT+TGG | - | chr5.4:68961290-68961309 | MS.gene39827:intron | 45.0% | |
| ATCCAACAATTCCTCCCAAC+AGG | - | chr5.4:68962097-68962116 | MS.gene39827:intron | 45.0% | |
| ATCCTAGCTTCATGTGGCAT+TGG | + | chr5.4:68961054-68961073 | None:intergenic | 45.0% | |
| ATTGTTTCCTAGGTGGCTGA+AGG | - | chr5.4:68962669-68962688 | MS.gene39827:CDS | 45.0% | |
| CAAAGTTGCATTAGTCCGAG+TGG | + | chr5.4:68963283-68963302 | None:intergenic | 45.0% | |
| CAACTAGACACCATGACAGT+TGG | + | chr5.4:68963167-68963186 | None:intergenic | 45.0% | |
| CAACTGTCATGGTGTCTAGT+TGG | - | chr5.4:68963165-68963184 | MS.gene39827:intron | 45.0% | |
| CACTCGGACTAATGCAACTT+TGG | - | chr5.4:68963281-68963300 | MS.gene39827:intron | 45.0% | |
| CGTTGCAGACCTAAGAACTT+TGG | + | chr5.4:68961553-68961572 | None:intergenic | 45.0% | |
| CTAATCTCTGCCAACTGTCA+TGG | - | chr5.4:68963154-68963173 | MS.gene39827:intron | 45.0% | |
| CTAGACTTTGTGGAGCAACT+AGG | - | chr5.4:68962694-68962713 | MS.gene39827:CDS | 45.0% | |
| CTCAGTTGTGGTGTATCAAC+AGG | - | chr5.4:68962129-68962148 | MS.gene39827:intron | 45.0% | |
| CTGTTGATACACCACAACTG+AGG | + | chr5.4:68962131-68962150 | None:intergenic | 45.0% | |
| GAGTGTATGACCACACAAAC+AGG | + | chr5.4:68961421-68961440 | None:intergenic | 45.0% | |
| GATCTCTCAAGCAAGGTTTC+GGG | + | chr5.4:68963249-68963268 | None:intergenic | 45.0% | |
| GGATCTCTCAAGCAAGGTTT+CGG | + | chr5.4:68963250-68963269 | None:intergenic | 45.0% | |
| TACTGGGTCATGAGGCAATT+GGG | - | chr5.4:68961291-68961310 | MS.gene39827:intron | 45.0% | |
| TCAATAATCAGTGGCTCACC+TGG | + | chr5.4:68961012-68961031 | None:intergenic | 45.0% | |
| TCCAACAATTCCTCCCAACA+GGG | - | chr5.4:68962098-68962117 | MS.gene39827:intron | 45.0% | |
| TTCTTCGCTGAATAAAGGGG+AGG | + | chr5.4:68962874-68962893 | None:intergenic | 45.0% | |
| TTGATACACCACAACTGAGG+AGG | + | chr5.4:68962128-68962147 | None:intergenic | 45.0% | |
| TTGTTAACTACGTGCATGCG+TGG | + | chr5.4:68961443-68961462 | None:intergenic | 45.0% | |
| ! | AGCCTCCTGCAATTTTTCCA+AGG | - | chr5.4:68961267-68961286 | MS.gene39827:intron | 45.0% |
| ! | AGGTGAGCCACTGATTATTG+AGG | - | chr5.4:68961011-68961030 | MS.gene39827:CDS | 45.0% |
| ! | AGTGTCTTCGGTGTGTGATT+TGG | - | chr5.4:68963820-68963839 | MS.gene39827:CDS | 45.0% |
| ! | TCTTCGGTGTGTGATTTGGA+TGG | - | chr5.4:68963824-68963843 | MS.gene39827:CDS | 45.0% |
| !! | GGGTCGACAGTAGCTATTTT+TGG | - | chr5.4:68962279-68962298 | MS.gene39827:intron | 45.0% |
| ATGTTAGGAGTGGACAAGCC+AGG | - | chr5.4:68963440-68963459 | MS.gene39827:CDS | 50.0% | |
| CACCAATGCCACATGAAGCT+AGG | - | chr5.4:68961049-68961068 | MS.gene39827:CDS | 50.0% | |
| GCTGAAGGAGCTAGACTTTG+TGG | - | chr5.4:68962684-68962703 | MS.gene39827:CDS | 50.0% | |
| TCCAACACTTTCCACAACCC+TGG | + | chr5.4:68961824-68961843 | None:intergenic | 50.0% | |
| TCCAAGGATACTGGGTCATG+AGG | - | chr5.4:68961283-68961302 | MS.gene39827:intron | 50.0% | |
| TGCATTAGTCCGAGTGGAAC+TGG | + | chr5.4:68963277-68963296 | None:intergenic | 50.0% | |
| TGTCTAGTTGGCCACCCTTA+TGG | - | chr5.4:68963177-68963196 | MS.gene39827:intron | 50.0% | |
| ! | CTAGCTTCATGTGGCATTGG+TGG | + | chr5.4:68961051-68961070 | None:intergenic | 50.0% |
| ! | TCCAGGGTTGTGGAAAGTGT+TGG | - | chr5.4:68961820-68961839 | MS.gene39827:CDS | 50.0% |
| !! | GGTTGTGGAAAGTGTTGGAG+AGG | - | chr5.4:68961825-68961844 | MS.gene39827:CDS | 50.0% |
| AGTCCGAGTGGAACTGGACT+CGG | + | chr5.4:68963271-68963290 | None:intergenic | 55.0% | |
| CCTGCTGCAGCAACAAGTGA+TGG | - | chr5.4:68960696-68960715 | MS.gene39827:CDS | 55.0% | |
| GATCCGAGTCCAGTTCCACT+CGG | - | chr5.4:68963265-68963284 | MS.gene39827:intron | 55.0% | |
| GCCCTGTTGGGAGGAATTGT+TGG | + | chr5.4:68962102-68962121 | None:intergenic | 55.0% | |
| GCCTCATGACCCAGTATCCT+TGG | + | chr5.4:68961287-68961306 | None:intergenic | 55.0% | |
| GGACTCGGATCTCTCAAGCA+AGG | + | chr5.4:68963256-68963275 | None:intergenic | 55.0% | |
| ! | CCATCACTTGTTGCTGCAGC+AGG | + | chr5.4:68960699-68960718 | None:intergenic | 55.0% |
| ! | GGTTTCGGGTCCAAGCATTG+TGG | + | chr5.4:68963235-68963254 | None:intergenic | 55.0% |
| ! | TCTAGCTCCTTCAGCCACCT+AGG | + | chr5.4:68962679-68962698 | None:intergenic | 55.0% |
| ! | TCTTAGGGGTAGGTGCTGCA+TGG | - | chr5.4:68962235-68962254 | MS.gene39827:CDS | 55.0% |
| AGGGCATGCCTCCTCAGTTG+TGG | - | chr5.4:68962117-68962136 | MS.gene39827:intron | 60.0% | |
| GCTGCGGTTTGTCGCAAACC+AGG | - | chr5.4:68960991-68961010 | MS.gene39827:CDS | 60.0% | |
| ! | ACTGAGGAGGCATGCCCTGT+TGG | + | chr5.4:68962115-68962134 | None:intergenic | 60.0% |
| ! | CTGAGGAGGCATGCCCTGTT+GGG | + | chr5.4:68962114-68962133 | None:intergenic | 60.0% |
| ! | AGGAGGCATGCCCTGTTGGG+AGG | + | chr5.4:68962111-68962130 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 68960684 | 68963854 | 68960684 | ID=MS.gene39827 |
| chr5.4 | mRNA | 68960684 | 68963854 | 68960684 | ID=MS.gene39827.t1;Parent=MS.gene39827 |
| chr5.4 | exon | 68963797 | 68963854 | 68963797 | ID=MS.gene39827.t1.exon1;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68963797 | 68963854 | 68963797 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68963410 | 68963546 | 68963410 | ID=MS.gene39827.t1.exon2;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68963410 | 68963546 | 68963410 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68963226 | 68963272 | 68963226 | ID=MS.gene39827.t1.exon3;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68963226 | 68963272 | 68963226 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68962388 | 68962713 | 68962388 | ID=MS.gene39827.t1.exon4;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68962388 | 68962713 | 68962388 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68962215 | 68962297 | 68962215 | ID=MS.gene39827.t1.exon5;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68962215 | 68962297 | 68962215 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68961782 | 68961857 | 68961782 | ID=MS.gene39827.t1.exon6;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68961782 | 68961857 | 68961782 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68961491 | 68961651 | 68961491 | ID=MS.gene39827.t1.exon7;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68961491 | 68961651 | 68961491 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68960952 | 68961116 | 68960952 | ID=MS.gene39827.t1.exon8;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68960952 | 68961116 | 68960952 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| chr5.4 | exon | 68960684 | 68960800 | 68960684 | ID=MS.gene39827.t1.exon9;Parent=MS.gene39827.t1 |
| chr5.4 | CDS | 68960684 | 68960800 | 68960684 | ID=cds.MS.gene39827.t1;Parent=MS.gene39827.t1 |
| Gene Sequence |
| Protein sequence |
