Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40056.t1 | XP_013468649.1 | 97.8 | 860 | 19 | 0 | 1 | 860 | 1 | 860 | 0.00E+00 | 1745.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40056.t1 | O53732 | 43.2 | 285 | 152 | 3 | 570 | 847 | 144 | 425 | 3.7e-56 | 221.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40056.t1 | A0A072VM29 | 97.8 | 860 | 19 | 0 | 1 | 860 | 1 | 860 | 0.0e+00 | 1745.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene40056 | 0.811735 | 6.03E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene40056 | 0.80982 | 1.57E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene40056 | 0.819337 | 1.22E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene40056 | 0.80298 | 4.34E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene40056 | 0.808201 | 3.48E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene40056 | 0.801543 | 8.57E-49 | -1.69E-46 |
| MS.gene052600 | MS.gene40056 | 0.800179 | 1.63E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene40056 | 0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene40056 | 0.831268 | 1.84E-55 | -1.69E-46 |
| MS.gene055277 | MS.gene40056 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene055422 | MS.gene40056 | 0.815811 | 7.63E-52 | -1.69E-46 |
| MS.gene056314 | MS.gene40056 | 0.829905 | 3.96E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene40056 | 0.811893 | 5.57E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene40056 | 0.804245 | 2.37E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene40056 | 0.817065 | 4.00E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene40056 | 0.829952 | 3.86E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene40056 | 0.827456 | 1.55E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene40056 | 0.814488 | 1.50E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene40056 | 0.816653 | 4.95E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40056.t1 | MTR_1g073700 | 97.791 | 860 | 19 | 0 | 1 | 860 | 1 | 860 | 0.0 | 1763 |
| MS.gene40056.t1 | MTR_1g044520 | 68.525 | 861 | 221 | 6 | 1 | 854 | 1 | 818 | 0.0 | 1211 |
| MS.gene40056.t1 | MTR_3g104740 | 28.270 | 237 | 157 | 6 | 576 | 807 | 81 | 309 | 1.19e-21 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40056.t1 | AT3G23510 | 74.392 | 863 | 216 | 4 | 1 | 860 | 1 | 861 | 0.0 | 1365 |
| MS.gene40056.t1 | AT3G23530 | 74.623 | 863 | 214 | 4 | 1 | 860 | 1 | 861 | 0.0 | 1362 |
| MS.gene40056.t1 | AT3G23470 | 67.982 | 456 | 143 | 2 | 406 | 858 | 25 | 480 | 0.0 | 661 |
| MS.gene40056.t1 | AT3G23470 | 67.982 | 456 | 143 | 2 | 406 | 858 | 25 | 480 | 0.0 | 661 |
| MS.gene40056.t1 | AT3G23470 | 67.991 | 453 | 142 | 2 | 409 | 858 | 1 | 453 | 0.0 | 658 |
| MS.gene40056.t1 | AT3G23480 | 66.591 | 443 | 145 | 3 | 409 | 850 | 1 | 441 | 0.0 | 618 |
| MS.gene40056.t1 | AT3G23480 | 61.674 | 454 | 146 | 6 | 409 | 858 | 1 | 430 | 0.0 | 560 |
| MS.gene40056.t1 | AT3G23480 | 61.985 | 413 | 130 | 5 | 450 | 858 | 4 | 393 | 4.63e-176 | 516 |
| MS.gene40056.t1 | AT3G23460 | 54.478 | 268 | 102 | 6 | 421 | 686 | 3 | 252 | 5.60e-83 | 268 |
| MS.gene40056.t1 | AT3G23460 | 72.368 | 76 | 21 | 0 | 779 | 854 | 209 | 284 | 2.95e-33 | 130 |
| MS.gene40056.t1 | AT4G33110 | 29.020 | 255 | 171 | 6 | 558 | 810 | 60 | 306 | 4.86e-25 | 108 |
| MS.gene40056.t1 | AT4G33110 | 29.020 | 255 | 171 | 6 | 558 | 810 | 60 | 306 | 4.86e-25 | 108 |
| MS.gene40056.t1 | AT4G33120 | 26.007 | 273 | 190 | 7 | 558 | 824 | 60 | 326 | 3.67e-22 | 99.8 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACCTGCTCTTCAATTT+TGG | 0.081221 | 1.4:+60178989 | None:intergenic |
| TTGTAAACTCAGTGAAATTT+TGG | 0.172166 | 1.4:-60177123 | MS.gene40056:intron |
| CTTGAGGTGTTGCAGCTTAT+TGG | 0.191178 | 1.4:-60179651 | MS.gene40056:intron |
| GACTCATTGCGATCCATATC+TGG | 0.215881 | 1.4:+60181924 | None:intergenic |
| CTATCATATTTGTATGTCTT+TGG | 0.234916 | 1.4:+60177976 | None:intergenic |
| CAGGAAGGTACCATGTGTTT+AGG | 0.247941 | 1.4:+60179955 | None:intergenic |
| TTCCAATTTGTGGTTCTATT+TGG | 0.251918 | 1.4:-60181711 | MS.gene40056:CDS |
| TGATGGACTTCTTGTTCTTC+AGG | 0.266991 | 1.4:-60177779 | MS.gene40056:intron |
| CTCAAAGAATTCCATCATAT+TGG | 0.270898 | 1.4:+60182760 | None:intergenic |
| TGATTTGGACCTTGGTTTCA+TGG | 0.272691 | 1.4:-60185187 | MS.gene40056:CDS |
| ATTGCAGCTCATGGAATTCT+TGG | 0.274520 | 1.4:-60180003 | MS.gene40056:CDS |
| TATGATGAGAGAAGAATTAT+TGG | 0.288707 | 1.4:-60180838 | MS.gene40056:CDS |
| GACATCTGCAAAGTTCTTCA+TGG | 0.299126 | 1.4:-60178854 | MS.gene40056:CDS |
| ATTTCATGAAGATGGATTAA+AGG | 0.305706 | 1.4:-60180173 | MS.gene40056:intron |
| AGGAAGGTACCATGTGTTTA+GGG | 0.317885 | 1.4:+60179956 | None:intergenic |
| GACCAAATAGAACCACAAAT+TGG | 0.321028 | 1.4:+60181709 | None:intergenic |
| GAATACATGGAAGAATTCTT+TGG | 0.321598 | 1.4:-60177826 | MS.gene40056:CDS |
| TTGGTTTCATGGTCTTCAAT+AGG | 0.325877 | 1.4:-60185176 | MS.gene40056:CDS |
| GTGGTTGGTGGTGGGATTAG+TGG | 0.327974 | 1.4:-60185315 | MS.gene40056:CDS |
| CTAGCGGATGCATACATTAA+TGG | 0.328036 | 1.4:-60179185 | MS.gene40056:CDS |
| TTGGTTTCATCATCTGAAAA+AGG | 0.330464 | 1.4:-60181077 | MS.gene40056:intron |
| TTTGGTTTCAGCTTATGTTT+TGG | 0.333472 | 1.4:-60185292 | MS.gene40056:CDS |
| AAACATGAAATTCTTGAGAT+TGG | 0.333905 | 1.4:-60178328 | MS.gene40056:CDS |
| TAGCGGATGCATACATTAAT+GGG | 0.334297 | 1.4:-60179184 | MS.gene40056:CDS |
| ATGTTTACCTTTGAGGGAAC+TGG | 0.340227 | 1.4:-60179614 | MS.gene40056:CDS |
| TTTGCAGGATGTGTCGTTTA+CGG | 0.342934 | 1.4:-60180949 | MS.gene40056:intron |
| TGGTTTCATGGTCTTCAATA+GGG | 0.343252 | 1.4:-60185175 | MS.gene40056:intron |
| TGTTTATCTCTGCAGCTCTT+TGG | 0.349442 | 1.4:-60181526 | MS.gene40056:intron |
| ACAAAGTTTGTGTGACATAC+TGG | 0.352082 | 1.4:-60180629 | MS.gene40056:CDS |
| ATTGAAGTTGTTAAAAGAAC+TGG | 0.353382 | 1.4:-60178283 | MS.gene40056:CDS |
| GCGTGCTCCAAGTTCTTTCC+AGG | 0.358244 | 1.4:+60179936 | None:intergenic |
| TAATGCTGATGGTGTTGATT+TGG | 0.360937 | 1.4:-60185202 | MS.gene40056:CDS |
| TGGTGGTGGGATTAGTGGTT+TGG | 0.366618 | 1.4:-60185310 | MS.gene40056:CDS |
| CTAAACACATGGTACCTTCC+TGG | 0.366912 | 1.4:-60179954 | MS.gene40056:CDS |
| TGAATTCTCAAAACACTCTT+GGG | 0.370499 | 1.4:+60179578 | None:intergenic |
| TATGGATCGCAATGAGTCTC+TGG | 0.380814 | 1.4:-60181919 | MS.gene40056:CDS |
| AGTTAAAGATGCTGGCCTTC+GGG | 0.382566 | 1.4:-60178203 | MS.gene40056:intron |
| TCAAAGAATTCCATCATATT+GGG | 0.391112 | 1.4:+60182761 | None:intergenic |
| TGAGAGTCTTGGAGTTGAAA+TGG | 0.395229 | 1.4:-60182741 | MS.gene40056:CDS |
| TGTATGTCTTTGGTAATTGC+CGG | 0.395473 | 1.4:+60177986 | None:intergenic |
| GTGAATTCTCAAAACACTCT+TGG | 0.397658 | 1.4:+60179577 | None:intergenic |
| ATGGAATTCTTTGAGAGTCT+TGG | 0.402654 | 1.4:-60182752 | MS.gene40056:CDS |
| CCTGATGCGTTGAGATTGTT+AGG | 0.403665 | 1.4:-60180874 | MS.gene40056:CDS |
| GGTTATGGATTTCATGAAGA+TGG | 0.403889 | 1.4:-60180181 | MS.gene40056:CDS |
| TGGCATCCGCATCCAGACTA+TGG | 0.404974 | 1.4:-60177454 | MS.gene40056:intron |
| TAAAGAACCGGTGGTAATAA+AGG | 0.410345 | 1.4:+60179888 | None:intergenic |
| AGTTCAAAGATGATGCTATA+AGG | 0.411304 | 1.4:-60182577 | MS.gene40056:intron |
| TACTCATCATAACGCTCATC+CGG | 0.413131 | 1.4:+60177557 | None:intergenic |
| CAGAAAATACATTGCTTAAG+TGG | 0.413575 | 1.4:-60180449 | MS.gene40056:CDS |
| GCTCGAGAATAACCCAGATA+TGG | 0.416608 | 1.4:-60181937 | MS.gene40056:CDS |
| ATACTCTCACACAGGCTAGA+AGG | 0.417607 | 1.4:-60178813 | MS.gene40056:CDS |
| ACCCATCAGCATGGAGTGCT+TGG | 0.418029 | 1.4:-60180674 | MS.gene40056:CDS |
| GAGTTAAAGATGCTGGCCTT+CGG | 0.424650 | 1.4:-60178204 | MS.gene40056:CDS |
| GATGGTGTTGATTTGGACCT+TGG | 0.425424 | 1.4:-60185195 | MS.gene40056:CDS |
| CAAAGGCCGTGGCTGCGAAT+GGG | 0.428208 | 1.4:-60182684 | MS.gene40056:CDS |
| TATTAGATTGTACCATAGTC+TGG | 0.429735 | 1.4:+60177442 | None:intergenic |
| AGAGTTGCAGTGGTTGGTGG+TGG | 0.430696 | 1.4:-60185324 | MS.gene40056:CDS |
| TGTATGTAGATTCCAATTTG+TGG | 0.430851 | 1.4:-60181721 | MS.gene40056:intron |
| GGAACAATGTTTACCTTTGA+GGG | 0.431478 | 1.4:-60179620 | MS.gene40056:CDS |
| TCGCAATCACCACCTACTTC+AGG | 0.434220 | 1.4:-60181632 | MS.gene40056:intron |
| ACGCACACTTGGGAATTATC+AGG | 0.436845 | 1.4:-60177027 | MS.gene40056:intron |
| CATGTGTCTTTAGGGGTTGG+TGG | 0.437757 | 1.4:-60178903 | MS.gene40056:intron |
| CAAAGACATACAAATATGAT+AGG | 0.440729 | 1.4:-60177975 | MS.gene40056:CDS |
| ATACTGGTTAAACATTCTTC+AGG | 0.443505 | 1.4:-60180613 | MS.gene40056:intron |
| CCTAACAATCTCAACGCATC+AGG | 0.447772 | 1.4:+60180874 | None:intergenic |
| ATACTCATGTGCAGTGTTCA+AGG | 0.452458 | 1.4:-60178625 | MS.gene40056:intron |
| TGGAGTGCTTGGAATTTCCT+TGG | 0.454194 | 1.4:-60180663 | MS.gene40056:CDS |
| ACATTGCTTAAGTGGTCAAC+TGG | 0.455428 | 1.4:-60180441 | MS.gene40056:CDS |
| TCATTTGTTGATAAAGATGA+AGG | 0.459873 | 1.4:-60179155 | MS.gene40056:CDS |
| CGCAGCCACGGCCTTTGTCT+AGG | 0.462140 | 1.4:+60182690 | None:intergenic |
| AGGAACAATGTTTACCTTTG+AGG | 0.465754 | 1.4:-60179621 | MS.gene40056:CDS |
| GTATGAGAAAGAAGATTACT+TGG | 0.468571 | 1.4:-60185244 | MS.gene40056:CDS |
| ACAAAGGCCGTGGCTGCGAA+TGG | 0.469027 | 1.4:-60182685 | MS.gene40056:CDS |
| GGATGAATTTAAATCTCTGT+TGG | 0.470475 | 1.4:+60179015 | None:intergenic |
| TCTTCATGGACCATGTTTCA+AGG | 0.471530 | 1.4:-60178840 | MS.gene40056:CDS |
| AAACCAGCCGTAAATAAAAT+CGG | 0.474194 | 1.4:+60178877 | None:intergenic |
| CTTTGTTGTTATTACTTCCA+AGG | 0.478126 | 1.4:+60180646 | None:intergenic |
| TGCTGCCCCATTCGCAGCCA+CGG | 0.479818 | 1.4:+60182678 | None:intergenic |
| GTCATGACACAGGCAGATTT+AGG | 0.481912 | 1.4:-60179209 | MS.gene40056:CDS |
| CTGAGTTCCTTTATTACCAC+CGG | 0.482796 | 1.4:-60179895 | MS.gene40056:CDS |
| GTACCTTCCTGGAAAGAACT+TGG | 0.482969 | 1.4:-60179943 | MS.gene40056:CDS |
| GTGAACTCACGTTAAAGAAC+CGG | 0.485745 | 1.4:+60179876 | None:intergenic |
| ATTTGGTCATGCTCTTCTGA+AGG | 0.488152 | 1.4:-60181694 | MS.gene40056:CDS |
| AATTTCTTCTATGCGACTAC+CGG | 0.492378 | 1.4:-60178005 | MS.gene40056:CDS |
| CTTGAGATTGGATGTGGATG+GGG | 0.492917 | 1.4:-60178316 | MS.gene40056:CDS |
| TGTGTTTAGGGTTGGTCTGA+AGG | 0.493420 | 1.4:+60179968 | None:intergenic |
| GCTGGCATGATTGCAGCTCA+TGG | 0.494331 | 1.4:-60180012 | MS.gene40056:CDS |
| GTGTTTAGGGTTGGTCTGAA+GGG | 0.494950 | 1.4:+60179969 | None:intergenic |
| TGGGGCAGCAGAAGTTTGTC+CGG | 0.495699 | 1.4:-60182665 | MS.gene40056:CDS |
| GAAATTCTTGAGATTGGATG+TGG | 0.499152 | 1.4:-60178322 | MS.gene40056:CDS |
| CTGAATGCAGTAACGTTCCC+AGG | 0.504504 | 1.4:+60176899 | None:intergenic |
| TGTGTCGTTTACGGCAAAGA+TGG | 0.505224 | 1.4:-60180940 | MS.gene40056:CDS |
| GTAGAGCTAGACCATATTCA+AGG | 0.506705 | 1.4:-60180381 | MS.gene40056:CDS |
| CTCCTCTGACAAAGTGATAC+CGG | 0.508711 | 1.4:+60178249 | None:intergenic |
| GCTTTGTATGCGGCAACTGA+TGG | 0.513207 | 1.4:+60180408 | None:intergenic |
| CATTTCTAGACATTATGATC+TGG | 0.515475 | 1.4:-60178788 | MS.gene40056:intron |
| TTCCAAGCACTCCATGCTGA+TGG | 0.517541 | 1.4:+60180672 | None:intergenic |
| CCAACCCAAAATTGAAGAGC+AGG | 0.517767 | 1.4:-60178994 | MS.gene40056:intron |
| GAGAAATATGAGAGTTGCAG+TGG | 0.517895 | 1.4:-60185334 | None:intergenic |
| CTTTGTATGCGGCAACTGAT+GGG | 0.525073 | 1.4:+60180409 | None:intergenic |
| TCTCTTCTGTGCGAATAAGC+CGG | 0.525104 | 1.4:+60182646 | None:intergenic |
| TCTTGAGATTGGATGTGGAT+GGG | 0.525582 | 1.4:-60178317 | MS.gene40056:CDS |
| TCAGTGATCCATACAAAAGC+TGG | 0.525706 | 1.4:-60176880 | MS.gene40056:CDS |
| ATGCGGCAACTGATGGGATC+GGG | 0.526425 | 1.4:+60180415 | None:intergenic |
| CTCACAGAATTATGTTAAGA+AGG | 0.526884 | 1.4:-60181473 | MS.gene40056:intron |
| TTGCAGAATATTGAAGAAGC+GGG | 0.527704 | 1.4:-60180510 | MS.gene40056:intron |
| GAGGTGTTGCAGCTTATTGG+AGG | 0.529698 | 1.4:-60179648 | MS.gene40056:intron |
| AAAGGCCGTGGCTGCGAATG+GGG | 0.531237 | 1.4:-60182683 | MS.gene40056:CDS |
| GGTGACCTATCCCAATATGA+TGG | 0.534373 | 1.4:-60182771 | MS.gene40056:CDS |
| AAAGAAGAGCTTCAGAGTAA+TGG | 0.534950 | 1.4:-60181131 | MS.gene40056:CDS |
| AATATGATAGGATTATATCT+TGG | 0.535641 | 1.4:-60177963 | MS.gene40056:intron |
| TGTTTACCTTTGAGGGAACT+GGG | 0.536160 | 1.4:-60179613 | MS.gene40056:CDS |
| ATGAGCGTTATGATGAGTAT+AGG | 0.536472 | 1.4:-60177553 | MS.gene40056:CDS |
| ATGGATCGCAATGAGTCTCT+GGG | 0.539159 | 1.4:-60181918 | MS.gene40056:CDS |
| TGGGGCAATTCCTCAAGTCA+AGG | 0.540736 | 1.4:-60181899 | MS.gene40056:CDS |
| CTGAGTAACCCCTTGACTTG+AGG | 0.544473 | 1.4:+60181889 | None:intergenic |
| ATGAGAGTTGCAGTGGTTGG+TGG | 0.545211 | 1.4:-60185327 | MS.gene40056:CDS |
| TCCAAGCACTCCATGCTGAT+GGG | 0.549415 | 1.4:+60180673 | None:intergenic |
| GAATTCCATCATATTGGGAT+AGG | 0.549525 | 1.4:+60182766 | None:intergenic |
| GGGGCAATTCCTCAAGTCAA+GGG | 0.550622 | 1.4:-60181898 | MS.gene40056:CDS |
| AGTGAAATGATAGAAGCTGT+TGG | 0.554426 | 1.4:-60177853 | MS.gene40056:CDS |
| ACTCATTGCGATCCATATCT+GGG | 0.558605 | 1.4:+60181925 | None:intergenic |
| GTTGCCTACCCTCTCTAAGT+AGG | 0.559456 | 1.4:-60177490 | MS.gene40056:CDS |
| TTCTTGAGATTGGATGTGGA+TGG | 0.561971 | 1.4:-60178318 | MS.gene40056:CDS |
| GAGTTGCAGTGGTTGGTGGT+GGG | 0.565837 | 1.4:-60185323 | MS.gene40056:CDS |
| TATGCGGCAACTGATGGGAT+CGG | 0.567661 | 1.4:+60180414 | None:intergenic |
| CGGTGGTAATAAAGGAACTC+AGG | 0.567733 | 1.4:+60179896 | None:intergenic |
| CACAATGGCTAACTGTCAGA+TGG | 0.571687 | 1.4:-60181498 | MS.gene40056:CDS |
| CATCTGACAGTTAGCCATTG+TGG | 0.573207 | 1.4:+60181499 | None:intergenic |
| TCTATAGTTCATATCAATCC+CGG | 0.573341 | 1.4:-60177576 | MS.gene40056:intron |
| GAATCAGTAATGGCAAATGA+TGG | 0.578032 | 1.4:-60177796 | MS.gene40056:CDS |
| AGGTACCATGTGTTTAGGGT+TGG | 0.579079 | 1.4:+60179960 | None:intergenic |
| AAAATTTCATGGAAAGGCAG+AGG | 0.580802 | 1.4:-60177219 | MS.gene40056:intron |
| ACTATCAAACACTAAGATTG+TGG | 0.580836 | 1.4:-60177246 | MS.gene40056:CDS |
| TTTGCAGAATATTGAAGAAG+CGG | 0.582290 | 1.4:-60180511 | MS.gene40056:intron |
| TAGTCTGGATGCGGATGCCA+TGG | 0.583295 | 1.4:+60177457 | None:intergenic |
| GGTTCTGAAGAAGTGTATGA+TGG | 0.583424 | 1.4:-60180919 | MS.gene40056:CDS |
| CATACCTTCCAATAAAATTG+TGG | 0.585806 | 1.4:+60179551 | None:intergenic |
| TGGTTGTTGTGAATCAGTAA+TGG | 0.588714 | 1.4:-60177806 | MS.gene40056:CDS |
| TGTTGCAGCTTATTGGAGGA+AGG | 0.589125 | 1.4:-60179644 | MS.gene40056:intron |
| GTCAGCCTAGACAAAGGCCG+TGG | 0.590448 | 1.4:-60182695 | MS.gene40056:CDS |
| AGAGAGGGTAGGCAACCTCC+TGG | 0.591232 | 1.4:+60177497 | None:intergenic |
| AAGTAGGATCACATCATCCA+TGG | 0.591586 | 1.4:-60177474 | MS.gene40056:CDS |
| TGATGTGATCCTACTTAGAG+AGG | 0.597804 | 1.4:+60177481 | None:intergenic |
| AGCTGTTGGACATGAATACA+TGG | 0.598486 | 1.4:-60177839 | MS.gene40056:CDS |
| CATTAATGTATGCATCCGCT+AGG | 0.598706 | 1.4:+60179186 | None:intergenic |
| ATTGTACCATAGTCTGGATG+CGG | 0.599048 | 1.4:+60177448 | None:intergenic |
| ACTCATCATAACGCTCATCC+GGG | 0.599580 | 1.4:+60177558 | None:intergenic |
| AGTGTATGATGGATGCATAA+TGG | 0.603498 | 1.4:-60180908 | MS.gene40056:CDS |
| CTCTACTGAAGCTTTGTATG+CGG | 0.610654 | 1.4:+60180398 | None:intergenic |
| TCTGTCCTAGAACCTGAAGT+AGG | 0.611202 | 1.4:+60181620 | None:intergenic |
| GCTCCAAGTTCTTTCCAGGA+AGG | 0.616267 | 1.4:+60179940 | None:intergenic |
| GTCGAGCACGTTGAAAACTT+CGG | 0.617161 | 1.4:-60177277 | MS.gene40056:CDS |
| TAGAGCTAGACCATATTCAA+GGG | 0.617186 | 1.4:-60180380 | MS.gene40056:CDS |
| TGCCGCAAAACCCATCAGCA+TGG | 0.621412 | 1.4:-60180683 | MS.gene40056:CDS |
| CACCGGTATCACTTTGTCAG+AGG | 0.623821 | 1.4:-60178251 | MS.gene40056:CDS |
| TATGAGAAAGAAGATTACTT+GGG | 0.626650 | 1.4:-60185243 | MS.gene40056:CDS |
| AATATGAGAGTTGCAGTGGT+TGG | 0.628362 | 1.4:-60185330 | MS.gene40056:CDS |
| GAGAAAGAAGATTACTTGGG+AGG | 0.629633 | 1.4:-60185240 | MS.gene40056:CDS |
| GAATTCTCAAAACACTCTTG+GGG | 0.629887 | 1.4:+60179579 | None:intergenic |
| GGCTAAAGGTGGAGTCAATG+TGG | 0.630863 | 1.4:-60185271 | MS.gene40056:CDS |
| TGAATGCAGTAACGTTCCCA+GGG | 0.641508 | 1.4:+60176900 | None:intergenic |
| CGGCAACTGATGGGATCGGG+TGG | 0.643527 | 1.4:+60180418 | None:intergenic |
| GATGTGATCCTACTTAGAGA+GGG | 0.646927 | 1.4:+60177482 | None:intergenic |
| TGCAGCTTATTGGAGGAAGG+AGG | 0.652930 | 1.4:-60179641 | MS.gene40056:intron |
| TCAGGAATCTAGTTACAAAG+AGG | 0.657976 | 1.4:+60179914 | None:intergenic |
| AGCTCTTTGGCAGACCACAA+TGG | 0.665504 | 1.4:-60181513 | MS.gene40056:CDS |
| GGGCAATTCCTCAAGTCAAG+GGG | 0.666111 | 1.4:-60181897 | MS.gene40056:CDS |
| AATTCTCAAAACACTCTTGG+GGG | 0.669988 | 1.4:+60179580 | None:intergenic |
| GTCCTAGAACCTGAAGTAGG+TGG | 0.670779 | 1.4:+60181623 | None:intergenic |
| AACTCACGTTAAAGAACCGG+TGG | 0.674012 | 1.4:+60179879 | None:intergenic |
| AGAACTGGTTGCAAATACAC+CGG | 0.676836 | 1.4:-60178268 | MS.gene40056:CDS |
| TCAGACCAACCCTAAACACA+TGG | 0.680274 | 1.4:-60179965 | MS.gene40056:CDS |
| TGATCCTACTTAGAGAGGGT+AGG | 0.687401 | 1.4:+60177486 | None:intergenic |
| AGCGGATGCATACATTAATG+GGG | 0.688447 | 1.4:-60179183 | MS.gene40056:CDS |
| TGTTTGTCAGGTCATGACAC+AGG | 0.688622 | 1.4:-60179219 | MS.gene40056:intron |
| TATTGAAGACCATGAAACCA+AGG | 0.698659 | 1.4:+60185178 | None:intergenic |
| TGGATCGCAATGAGTCTCTG+GGG | 0.724900 | 1.4:-60181917 | MS.gene40056:CDS |
| ACAGGCAGATTTAGGCCTAG+CGG | 0.728795 | 1.4:-60179201 | MS.gene40056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 60176874 | 60185349 | 60176874 | ID=MS.gene40056 |
| chr1.4 | mRNA | 60176874 | 60185349 | 60176874 | ID=MS.gene40056.t1;Parent=MS.gene40056 |
| chr1.4 | exon | 60185176 | 60185349 | 60185176 | ID=MS.gene40056.t1.exon1;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60185176 | 60185349 | 60185176 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60182578 | 60182792 | 60182578 | ID=MS.gene40056.t1.exon2;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60182578 | 60182792 | 60182578 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60181866 | 60181971 | 60181866 | ID=MS.gene40056.t1.exon3;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60181866 | 60181971 | 60181866 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60181633 | 60181734 | 60181633 | ID=MS.gene40056.t1.exon4;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60181633 | 60181734 | 60181633 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60181474 | 60181533 | 60181474 | ID=MS.gene40056.t1.exon5;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60181474 | 60181533 | 60181474 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60181078 | 60181156 | 60181078 | ID=MS.gene40056.t1.exon6;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60181078 | 60181156 | 60181078 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60180817 | 60180964 | 60180817 | ID=MS.gene40056.t1.exon7;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60180817 | 60180964 | 60180817 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60180614 | 60180737 | 60180614 | ID=MS.gene40056.t1.exon8;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60180614 | 60180737 | 60180614 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60180346 | 60180526 | 60180346 | ID=MS.gene40056.t1.exon9;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60180346 | 60180526 | 60180346 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60180174 | 60180202 | 60180174 | ID=MS.gene40056.t1.exon10;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60180174 | 60180202 | 60180174 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60179886 | 60180034 | 60179886 | ID=MS.gene40056.t1.exon11;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60179886 | 60180034 | 60179886 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60179556 | 60179658 | 60179556 | ID=MS.gene40056.t1.exon12;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60179556 | 60179658 | 60179556 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60179136 | 60179231 | 60179136 | ID=MS.gene40056.t1.exon13;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60179136 | 60179231 | 60179136 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60178995 | 60179047 | 60178995 | ID=MS.gene40056.t1.exon14;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60178995 | 60179047 | 60178995 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60178789 | 60178912 | 60178789 | ID=MS.gene40056.t1.exon15;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60178789 | 60178912 | 60178789 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60178626 | 60178688 | 60178626 | ID=MS.gene40056.t1.exon16;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60178626 | 60178688 | 60178626 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60178447 | 60178506 | 60178447 | ID=MS.gene40056.t1.exon17;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60178447 | 60178506 | 60178447 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60178204 | 60178365 | 60178204 | ID=MS.gene40056.t1.exon18;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60178204 | 60178365 | 60178204 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60177964 | 60178037 | 60177964 | ID=MS.gene40056.t1.exon19;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60177964 | 60178037 | 60177964 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60177780 | 60177873 | 60177780 | ID=MS.gene40056.t1.exon20;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60177780 | 60177873 | 60177780 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60177455 | 60177591 | 60177455 | ID=MS.gene40056.t1.exon21;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60177455 | 60177591 | 60177455 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60177220 | 60177300 | 60177220 | ID=MS.gene40056.t1.exon22;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60177220 | 60177300 | 60177220 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60177028 | 60177133 | 60177028 | ID=MS.gene40056.t1.exon23;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60177028 | 60177133 | 60177028 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| chr1.4 | exon | 60176874 | 60176936 | 60176874 | ID=MS.gene40056.t1.exon24;Parent=MS.gene40056.t1 |
| chr1.4 | CDS | 60176874 | 60176936 | 60176874 | ID=cds.MS.gene40056.t1;Parent=MS.gene40056.t1 |
| Gene Sequence |
| Protein sequence |
