Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40102.t1 | XP_003608337.1 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 1.10E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40102.t1 | Q40784 | 64.4 | 298 | 103 | 2 | 15 | 310 | 25 | 321 | 9.0e-117 | 421.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40102.t1 | G7JU00 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 7.9e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40102 | MS.gene053078 | PPI |
| MS.gene73340 | MS.gene40102 | PPI |
| MS.gene40102 | MS.gene024663 | PPI |
| MS.gene032655 | MS.gene40102 | PPI |
| MS.gene21644 | MS.gene40102 | PPI |
| MS.gene40102 | MS.gene072750 | PPI |
| MS.gene060400 | MS.gene40102 | PPI |
| MS.gene82807 | MS.gene40102 | PPI |
| MS.gene40102 | MS.gene82807 | PPI |
| MS.gene40102 | MS.gene57695 | PPI |
| MS.gene40102 | MS.gene037013 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40102.t1 | MTR_4g092780 | 98.423 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 0.0 | 646 |
| MS.gene40102.t1 | MTR_7g116910 | 89.841 | 315 | 32 | 0 | 1 | 315 | 1 | 315 | 0.0 | 598 |
| MS.gene40102.t1 | MTR_5g009670 | 73.443 | 305 | 79 | 2 | 1 | 304 | 1 | 304 | 1.28e-169 | 473 |
| MS.gene40102.t1 | MTR_2g036810 | 66.113 | 301 | 99 | 2 | 16 | 314 | 14 | 313 | 5.09e-153 | 431 |
| MS.gene40102.t1 | MTR_4g005740 | 63.823 | 293 | 103 | 2 | 20 | 310 | 14 | 305 | 9.77e-143 | 405 |
| MS.gene40102.t1 | MTR_5g009670 | 71.200 | 250 | 70 | 2 | 1 | 249 | 1 | 249 | 2.48e-130 | 372 |
| MS.gene40102.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 7 | 295 | 8.32e-118 | 342 |
| MS.gene40102.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 65 | 353 | 2.41e-117 | 343 |
| MS.gene40102.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 54 | 342 | 2.51e-117 | 342 |
| MS.gene40102.t1 | MTR_5g020640 | 31.673 | 281 | 172 | 7 | 23 | 301 | 50 | 312 | 3.45e-34 | 127 |
| MS.gene40102.t1 | MTR_5g020640 | 35.260 | 173 | 103 | 4 | 23 | 195 | 50 | 213 | 5.35e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40102.t1 | AT3G61610 | 73.817 | 317 | 83 | 0 | 1 | 317 | 1 | 317 | 0.0 | 504 |
| MS.gene40102.t1 | AT3G61610 | 73.955 | 311 | 81 | 0 | 7 | 317 | 1 | 311 | 1.20e-178 | 496 |
| MS.gene40102.t1 | AT4G23730 | 65.763 | 295 | 100 | 1 | 11 | 304 | 12 | 306 | 1.87e-153 | 432 |
| MS.gene40102.t1 | AT4G23730 | 64.452 | 301 | 100 | 2 | 11 | 304 | 12 | 312 | 7.80e-151 | 426 |
| MS.gene40102.t1 | AT5G57330 | 63.576 | 302 | 107 | 2 | 11 | 310 | 5 | 305 | 7.05e-148 | 418 |
| MS.gene40102.t1 | AT4G23730 | 67.658 | 269 | 86 | 1 | 37 | 304 | 3 | 271 | 3.11e-143 | 405 |
| MS.gene40102.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene40102.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene40102.t1 | AT5G14500 | 59.932 | 292 | 114 | 2 | 19 | 310 | 8 | 296 | 4.29e-131 | 375 |
| MS.gene40102.t1 | AT5G14500 | 55.205 | 317 | 114 | 3 | 19 | 310 | 8 | 321 | 1.31e-124 | 360 |
| MS.gene40102.t1 | AT4G25900 | 50.000 | 290 | 139 | 2 | 15 | 304 | 32 | 315 | 6.85e-109 | 320 |
| MS.gene40102.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 19 | 278 | 1.51e-36 | 132 |
| MS.gene40102.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene40102.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene40102.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
Find 86 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTCCTCGTATTGCTTT+TGG | 0.257552 | 4.3:+21381030 | None:intergenic |
| TATTCCTCACTCGTGATATC+AGG | 0.261723 | 4.3:+21380490 | None:intergenic |
| CGCATACCATACATACTTGT+TGG | 0.306903 | 4.3:-21380439 | MS.gene40102:CDS |
| TATGCGAATGAGAAACTAAA+TGG | 0.347249 | 4.3:+21380456 | None:intergenic |
| TATACCTGTGGAAAACATAT+TGG | 0.354365 | 4.3:+21381006 | None:intergenic |
| CCCGTGCCGAAGCGCCTTGT+GGG | 0.355163 | 4.3:+21381815 | None:intergenic |
| TGCAATTAGGTAAGCTTACA+TGG | 0.360588 | 4.3:-21381621 | MS.gene40102:intron |
| TCTAGAACTGCGATTATGTT+TGG | 0.370057 | 4.3:+21379855 | None:intergenic |
| TACCTCGGATTCAAATGTTA+TGG | 0.374354 | 4.3:+21380055 | None:intergenic |
| CTCCCTGTCCACTCCTCTCC+AGG | 0.395754 | 4.3:+21379417 | None:intergenic |
| CACTTCATGGCGTAATGAGC+AGG | 0.401746 | 4.3:-21381589 | MS.gene40102:CDS |
| AAAATTTGTATAGTGAGATA+AGG | 0.404611 | 4.3:-21380151 | MS.gene40102:intron |
| CTTCAGATAATTTGAGTAGC+AGG | 0.408420 | 4.3:+21380750 | None:intergenic |
| ACTTGTTGGTTTCTGACATA+AGG | 0.410514 | 4.3:-21380425 | MS.gene40102:intron |
| AAATTTGTATAGTGAGATAA+GGG | 0.410995 | 4.3:-21380150 | MS.gene40102:intron |
| AAACAAATGCTTTGTGTAGA+TGG | 0.429208 | 4.3:-21379471 | MS.gene40102:CDS |
| GCAAATAGCATACCAACATC+AGG | 0.441237 | 4.3:+21379789 | None:intergenic |
| ATGGAGCGCAGGTCACTTCA+TGG | 0.445349 | 4.3:-21381602 | MS.gene40102:CDS |
| CTGTCGTAAGAGACACTCTA+AGG | 0.452777 | 4.3:+21380526 | None:intergenic |
| GAATTTACAAAGGACTTGAA+TGG | 0.456569 | 4.3:-21381862 | MS.gene40102:CDS |
| TCTCCAGGCTTCAAGTTCAC+AGG | 0.459284 | 4.3:+21379432 | None:intergenic |
| ACCCGTGCCGAAGCGCCTTG+TGG | 0.465263 | 4.3:+21381814 | None:intergenic |
| GACTTCGATTTCTTCTCCCA+TGG | 0.466878 | 4.3:+21379522 | None:intergenic |
| CAGAAACCAACAAGTATGTA+TGG | 0.472937 | 4.3:+21380433 | None:intergenic |
| AAGCCTGGAGAGGAGTGGAC+AGG | 0.473546 | 4.3:-21379420 | MS.gene40102:CDS |
| TTCTAGATCATGAGAGGAAA+CGG | 0.476080 | 4.3:-21379839 | MS.gene40102:CDS |
| TCACTCGTGATATCAGGGTT+AGG | 0.481124 | 4.3:+21380496 | None:intergenic |
| CCCCACAAGGCGCTTCGGCA+CGG | 0.482644 | 4.3:-21381816 | MS.gene40102:CDS |
| GGGGCATTCGGCAGCTGTGT+GGG | 0.490352 | 4.3:-21381902 | MS.gene40102:CDS |
| GTTTGGAAACTGTGGATCGC+TGG | 0.500146 | 4.3:-21380867 | MS.gene40102:CDS |
| TCGAAGTCGATGGTGGACTT+TGG | 0.502611 | 4.3:-21379507 | MS.gene40102:CDS |
| TATAGTGAGATAAGGGTTGA+AGG | 0.506399 | 4.3:-21380143 | MS.gene40102:intron |
| TCGGACCCCACAAGGCGCTT+CGG | 0.506831 | 4.3:-21381821 | MS.gene40102:CDS |
| AAACCTGTGAACTTGAAGCC+TGG | 0.507242 | 4.3:-21379435 | MS.gene40102:CDS |
| GTGCAGCCGTGTGGAATCCA+TGG | 0.507273 | 4.3:-21379539 | MS.gene40102:intron |
| AGCCTGGAGAGGAGTGGACA+GGG | 0.507327 | 4.3:-21379419 | MS.gene40102:CDS |
| CCCACAAGGCGCTTCGGCAC+GGG | 0.509186 | 4.3:-21381815 | MS.gene40102:intron |
| TCATTTGGAGGCAAAGGAGG+AGG | 0.514508 | 4.3:+21380797 | None:intergenic |
| TTGGAATCATTTGGAGGCAA+AGG | 0.515039 | 4.3:+21380791 | None:intergenic |
| ACGGACATACATTATAAGAA+AGG | 0.533476 | 4.3:-21379820 | MS.gene40102:CDS |
| TCATAATAGTTTGGAAACTG+TGG | 0.533947 | 4.3:-21380875 | MS.gene40102:intron |
| TTGCCTCCAAATGATTCCAA+TGG | 0.540698 | 4.3:-21380788 | MS.gene40102:CDS |
| TTTCCATTGGAATCATTTGG+AGG | 0.543188 | 4.3:+21380785 | None:intergenic |
| TGGGGCATTCGGCAGCTGTG+TGG | 0.545391 | 4.3:-21381903 | MS.gene40102:CDS |
| GAATGAGAAACTAAATGGCT+TGG | 0.548213 | 4.3:+21380461 | None:intergenic |
| TCTTGAGACACTTGATTACC+TGG | 0.549791 | 4.3:-21380120 | MS.gene40102:CDS |
| CTTCTCCCATGGATTCCACA+CGG | 0.552012 | 4.3:+21379533 | None:intergenic |
| AGAGTGTCTCTTACGACAGA+TGG | 0.553805 | 4.3:-21380522 | MS.gene40102:CDS |
| ATGTGAAGTGCTGGCCACAT+AGG | 0.567231 | 4.3:-21380724 | MS.gene40102:intron |
| GAATCATTTGGAGGCAAAGG+AGG | 0.570451 | 4.3:+21380794 | None:intergenic |
| TGTGGATCGCTGGAGCTGCA+TGG | 0.572350 | 4.3:-21380857 | MS.gene40102:CDS |
| TGCCATAACATTTGAATCCG+AGG | 0.572417 | 4.3:-21380057 | MS.gene40102:intron |
| TTGATTGTAGACACTTTCAA+AGG | 0.575710 | 4.3:-21381055 | MS.gene40102:intron |
| ATTCCTCACTCGTGATATCA+GGG | 0.579407 | 4.3:+21380491 | None:intergenic |
| CTGAAGAAGATGTGAAGTGC+TGG | 0.583076 | 4.3:-21380733 | MS.gene40102:CDS |
| ACTTCATGGCGTAATGAGCA+GGG | 0.587126 | 4.3:-21381588 | MS.gene40102:CDS |
| GGTAAGCTTACATGGAGCGC+AGG | 0.592548 | 4.3:-21381613 | MS.gene40102:CDS |
| AAGGAAGGTCTCCCTGATGT+TGG | 0.594415 | 4.3:-21379801 | MS.gene40102:intron |
| GATTTGCAAGAAATAAAATG+TGG | 0.594654 | 4.3:-21380835 | MS.gene40102:CDS |
| TTTGAGTAGCAGGTCGACAA+AGG | 0.600438 | 4.3:+21380760 | None:intergenic |
| CCGTGCCGAAGCGCCTTGTG+GGG | 0.608350 | 4.3:+21381816 | None:intergenic |
| GAATCGATCAAGTTGTACTT+CGG | 0.613420 | 4.3:-21381840 | MS.gene40102:CDS |
| GAAGAAATCGAAGTCGATGG+TGG | 0.614525 | 4.3:-21379514 | MS.gene40102:CDS |
| TGTGAACTTGAAGCCTGGAG+AGG | 0.615658 | 4.3:-21379430 | MS.gene40102:CDS |
| CAATCAAGTTAATACCTATG+TGG | 0.617553 | 4.3:+21380710 | None:intergenic |
| ACTTGAAGCCTGGAGAGGAG+TGG | 0.621676 | 4.3:-21379425 | MS.gene40102:CDS |
| ACATACATTATAAGAAAGGA+AGG | 0.622005 | 4.3:-21379816 | MS.gene40102:CDS |
| AGCAGCAACTGAATTTACAA+AGG | 0.623532 | 4.3:-21381872 | MS.gene40102:CDS |
| ATTTGCAAGAAATAAAATGT+GGG | 0.626744 | 4.3:-21380834 | MS.gene40102:CDS |
| CGACTAGGTCTCGACAGAAG+TGG | 0.627675 | 4.3:-21379354 | MS.gene40102:CDS |
| CAAATAGCATACCAACATCA+GGG | 0.631758 | 4.3:+21379790 | None:intergenic |
| ACTGCTATTCACAAGCTGCA+AGG | 0.635776 | 4.3:-21381559 | MS.gene40102:intron |
| GGAGAAGAAATCGAAGTCGA+TGG | 0.636854 | 4.3:-21379517 | MS.gene40102:CDS |
| CTGGAGAGGAGTGGACAGGG+AGG | 0.637296 | 4.3:-21379416 | MS.gene40102:CDS |
| TCGCAGTTCTAGATCATGAG+AGG | 0.640361 | 4.3:-21379845 | MS.gene40102:CDS |
| GTTGTACTTCGGACCCCACA+AGG | 0.644189 | 4.3:-21381829 | MS.gene40102:CDS |
| TGCAGCCGTGTGGAATCCAT+GGG | 0.655533 | 4.3:-21379538 | MS.gene40102:intron |
| TGTTTCTTTGTGCAGCCGTG+TGG | 0.657679 | 4.3:-21379548 | MS.gene40102:intron |
| AAAGCACGAGTTACAGAACA+AGG | 0.658067 | 4.3:-21380083 | MS.gene40102:CDS |
| TTCATGGCGTAATGAGCAGG+GGG | 0.663337 | 4.3:-21381586 | MS.gene40102:CDS |
| CTTCATGGCGTAATGAGCAG+GGG | 0.667301 | 4.3:-21381587 | MS.gene40102:CDS |
| CACTTCTGTCGAGACCTAGT+CGG | 0.679916 | 4.3:+21379355 | None:intergenic |
| TAACCCTGATATCACGAGTG+AGG | 0.687144 | 4.3:-21380494 | MS.gene40102:CDS |
| GCGCCAAAAGCAATACGAGG+AGG | 0.709878 | 4.3:-21381033 | MS.gene40102:CDS |
| TCGTAAGAGACACTCTAAGG+CGG | 0.717538 | 4.3:+21380529 | None:intergenic |
| AAGGCGCCAAAAGCAATACG+AGG | 0.738080 | 4.3:-21381036 | MS.gene40102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTATTTTTATTTTTAGA+TGG | - | chr4.3:21379737-21379756 | MS.gene40102:intron | 10.0% |
| !! | GTTTATTAATGATAAATACT+TGG | - | chr4.3:21380989-21381008 | MS.gene40102:intron | 15.0% |
| !!! | AAAAACTCATTTTTGATAAT+AGG | + | chr4.3:21379820-21379839 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTTAGATGGTA+TGG | - | chr4.3:21379742-21379761 | MS.gene40102:intron | 15.0% |
| !!! | GTAAATTAAGCTTTTATTTT+TGG | - | chr4.3:21381274-21381293 | MS.gene40102:intron | 15.0% |
| !!! | TTTTCTTCAAATATGATAAT+TGG | - | chr4.3:21381068-21381087 | MS.gene40102:intron | 15.0% |
| !! | AAAATTTGTATAGTGAGATA+AGG | - | chr4.3:21381100-21381119 | MS.gene40102:intron | 20.0% |
| !! | AAATTTGTATAGTGAGATAA+GGG | - | chr4.3:21381101-21381120 | MS.gene40102:intron | 20.0% |
| !! | ATTTGCAAGAAATAAAATGT+GGG | - | chr4.3:21380417-21380436 | MS.gene40102:intron | 20.0% |
| !! | CCAAACTATTATGAAAATTT+AGG | + | chr4.3:21380370-21380389 | None:intergenic | 20.0% |
| !! | TAAAAGCTTAATTTACATCT+TGG | + | chr4.3:21381270-21381289 | None:intergenic | 20.0% |
| !! | TACTTTAATCTAAATGAAAC+AGG | + | chr4.3:21380322-21380341 | None:intergenic | 20.0% |
| !! | TATATATTCCAAAACTATCA+GGG | + | chr4.3:21381047-21381066 | None:intergenic | 20.0% |
| !! | TTATATATTCCAAAACTATC+AGG | + | chr4.3:21381048-21381067 | None:intergenic | 20.0% |
| !! | TTCAATATCAATACATGATA+AGG | - | chr4.3:21379532-21379551 | MS.gene40102:CDS | 20.0% |
| !!! | ACAATCATTTCTTTTTTTGA+GGG | - | chr4.3:21380874-21380893 | MS.gene40102:intron | 20.0% |
| !!! | ATTTGTGTTTTTTGTTACTT+TGG | + | chr4.3:21381561-21381580 | None:intergenic | 20.0% |
| !!! | CCTAAATTTTCATAATAGTT+TGG | - | chr4.3:21380367-21380386 | MS.gene40102:intron | 20.0% |
| !!! | TAAACATTTAAAACCTTGTT+CGG | + | chr4.3:21381605-21381624 | None:intergenic | 20.0% |
| !!! | TATCTTTTTTTCTTGCAATT+AGG | - | chr4.3:21379617-21379636 | MS.gene40102:intron | 20.0% |
| !!! | TCTCAAATCTCAATAATTTT+GGG | - | chr4.3:21380296-21380315 | MS.gene40102:intron | 20.0% |
| !!! | TTTGTGTTTTTTGTTACTTT+GGG | + | chr4.3:21381560-21381579 | None:intergenic | 20.0% |
| ! | AAGCTATTCTGTTTAATCTA+TGG | - | chr4.3:21381630-21381649 | MS.gene40102:intron | 25.0% |
| ! | AATACATGATAAGGAAAACT+TGG | - | chr4.3:21379541-21379560 | MS.gene40102:intron | 25.0% |
| ! | AATCAATTGCAAATAAGAGA+AGG | + | chr4.3:21380182-21380201 | None:intergenic | 25.0% |
| ! | ACATACATTATAAGAAAGGA+AGG | - | chr4.3:21381435-21381454 | MS.gene40102:intron | 25.0% |
| ! | ACCAATATTTCTTTGTAAAG+AGG | - | chr4.3:21380136-21380155 | MS.gene40102:CDS | 25.0% |
| ! | AGTTTGAGAATATATAATCG+AGG | - | chr4.3:21379582-21379601 | MS.gene40102:intron | 25.0% |
| ! | GATTTGCAAGAAATAAAATG+TGG | - | chr4.3:21380416-21380435 | MS.gene40102:intron | 25.0% |
| ! | TAAGATATATGTGTTATGCA+TGG | + | chr4.3:21380345-21380364 | None:intergenic | 25.0% |
| ! | TATGGTAATTTCCTTGATAT+TGG | - | chr4.3:21381663-21381682 | MS.gene40102:intron | 25.0% |
| ! | TATGTATGTATACTTCTTCA+GGG | - | chr4.3:21380967-21380986 | MS.gene40102:intron | 25.0% |
| ! | TTGAAAACCTCTTTATTCAT+AGG | + | chr4.3:21381329-21381348 | None:intergenic | 25.0% |
| ! | TTTCATTCCATGTTAATAGA+CGG | + | chr4.3:21380601-21380620 | None:intergenic | 25.0% |
| !! | GTCTCAAATCTCAATAATTT+TGG | - | chr4.3:21380295-21380314 | MS.gene40102:intron | 25.0% |
| !! | GTTGATTGATTTATTTGCAT+CGG | - | chr4.3:21379468-21379487 | MS.gene40102:CDS | 25.0% |
| !!! | ATCTATGGTATGTAGTTTTA+TGG | - | chr4.3:21381645-21381664 | MS.gene40102:intron | 25.0% |
| !!! | ATTCATGAGCAATTGTTTTA+TGG | + | chr4.3:21380567-21380586 | None:intergenic | 25.0% |
| !!! | GACAATCATTTCTTTTTTTG+AGG | - | chr4.3:21380873-21380892 | MS.gene40102:intron | 25.0% |
| !!! | TAAGCTTTTATTTTTGGTTG+TGG | - | chr4.3:21381280-21381299 | MS.gene40102:intron | 25.0% |
| !!! | TTGTGTTTTTTGTTACTTTG+GGG | + | chr4.3:21381559-21381578 | None:intergenic | 25.0% |
| AAACAAATGCTTTGTGTAGA+TGG | - | chr4.3:21381780-21381799 | MS.gene40102:intron | 30.0% | |
| ACGGACATACATTATAAGAA+AGG | - | chr4.3:21381431-21381450 | MS.gene40102:intron | 30.0% | |
| ATAAGTGCAAAAGAAAACGA+GGG | - | chr4.3:21379980-21379999 | MS.gene40102:intron | 30.0% | |
| CAATCAAGTTAATACCTATG+TGG | + | chr4.3:21380544-21380563 | None:intergenic | 30.0% | |
| CTATGTATGTATACTTCTTC+AGG | - | chr4.3:21380966-21380985 | MS.gene40102:intron | 30.0% | |
| GAATTTACAAAGGACTTGAA+TGG | - | chr4.3:21379389-21379408 | MS.gene40102:CDS | 30.0% | |
| GCCTCTTTACAAAGAAATAT+TGG | + | chr4.3:21380140-21380159 | None:intergenic | 30.0% | |
| GTAGTAATTAGTTATACCTG+TGG | + | chr4.3:21380260-21380279 | None:intergenic | 30.0% | |
| GTAGTGTACAAGAAAAAAGA+TGG | + | chr4.3:21380917-21380936 | None:intergenic | 30.0% | |
| TATAAGTGCAAAAGAAAACG+AGG | - | chr4.3:21379979-21379998 | MS.gene40102:intron | 30.0% | |
| TATACCTGTGGAAAACATAT+TGG | + | chr4.3:21380248-21380267 | None:intergenic | 30.0% | |
| TATGCGAATGAGAAACTAAA+TGG | + | chr4.3:21380798-21380817 | None:intergenic | 30.0% | |
| TCATAATAGTTTGGAAACTG+TGG | - | chr4.3:21380376-21380395 | MS.gene40102:intron | 30.0% | |
| TCTATATTTCCATATCCTGT+CGG | + | chr4.3:21380110-21380129 | None:intergenic | 30.0% | |
| TGAATTAATATCCAACTCTG+TGG | + | chr4.3:21380078-21380097 | None:intergenic | 30.0% | |
| TGTACAAGAAAAAAGATGGT+TGG | + | chr4.3:21380913-21380932 | None:intergenic | 30.0% | |
| TGTTATGAAATACATATCCG+CGG | + | chr4.3:21379843-21379862 | None:intergenic | 30.0% | |
| TTGATTGTAGACACTTTCAA+AGG | - | chr4.3:21380196-21380215 | MS.gene40102:intron | 30.0% | |
| ! | AATTCCAATATGTTTTCCAC+AGG | - | chr4.3:21380241-21380260 | MS.gene40102:intron | 30.0% |
| ! | ATCAAAAATGAGTTTTTCCG+CGG | - | chr4.3:21379823-21379842 | MS.gene40102:CDS | 30.0% |
| ! | GATTTTCCATTGGAATCATT+TGG | + | chr4.3:21380472-21380491 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGTTACTTTGG+GGG | + | chr4.3:21381558-21381577 | None:intergenic | 30.0% |
| AACCTCTTTATTCATAGGCT+AGG | + | chr4.3:21381324-21381343 | None:intergenic | 35.0% | |
| ACTACAAATTTCCGCAGAAA+TGG | - | chr4.3:21379905-21379924 | MS.gene40102:intron | 35.0% | |
| AGCAGCAACTGAATTTACAA+AGG | - | chr4.3:21379379-21379398 | MS.gene40102:CDS | 35.0% | |
| ATTAATATCCAACTCTGTGG+TGG | + | chr4.3:21380075-21380094 | None:intergenic | 35.0% | |
| ATTCACTCCGTCTATTAACA+TGG | - | chr4.3:21380591-21380610 | MS.gene40102:intron | 35.0% | |
| CAAATAGCATACCAACATCA+GGG | + | chr4.3:21381464-21381483 | None:intergenic | 35.0% | |
| CAGAAACCAACAAGTATGTA+TGG | + | chr4.3:21380821-21380840 | None:intergenic | 35.0% | |
| CTTCAGATAATTTGAGTAGC+AGG | + | chr4.3:21380504-21380523 | None:intergenic | 35.0% | |
| GAATGAGAAACTAAATGGCT+TGG | + | chr4.3:21380793-21380812 | None:intergenic | 35.0% | |
| GTACACTACAAATTGACTGT+TGG | - | chr4.3:21380928-21380947 | MS.gene40102:intron | 35.0% | |
| TACCTCGGATTCAAATGTTA+TGG | + | chr4.3:21381199-21381218 | None:intergenic | 35.0% | |
| TATAGTGAGATAAGGGTTGA+AGG | - | chr4.3:21381108-21381127 | MS.gene40102:intron | 35.0% | |
| TGCAATTAGGTAAGCTTACA+TGG | - | chr4.3:21379630-21379649 | MS.gene40102:intron | 35.0% | |
| TTCTAGATCATGAGAGGAAA+CGG | - | chr4.3:21381412-21381431 | MS.gene40102:intron | 35.0% | |
| TTGGTTTCTGACATAAGGTA+TGG | - | chr4.3:21380831-21380850 | MS.gene40102:CDS | 35.0% | |
| TTTCCATTGGAATCATTTGG+AGG | + | chr4.3:21380469-21380488 | None:intergenic | 35.0% | |
| ! | ATTTCCTTGATATTGGTGAC+AGG | - | chr4.3:21381670-21381689 | MS.gene40102:intron | 35.0% |
| ! | GAATCGATCAAGTTGTACTT+CGG | - | chr4.3:21379411-21379430 | MS.gene40102:CDS | 35.0% |
| ! | GGTATGGATTTGTTTACTGT+CGG | - | chr4.3:21379758-21379777 | MS.gene40102:intron | 35.0% |
| ! | TAGACATGTGAAAGTGTGAA+TGG | - | chr4.3:21380042-21380061 | MS.gene40102:intron | 35.0% |
| ! | TCTAGAACTGCGATTATGTT+TGG | + | chr4.3:21381399-21381418 | None:intergenic | 35.0% |
| !! | ACTTGTTGGTTTCTGACATA+AGG | - | chr4.3:21380826-21380845 | MS.gene40102:CDS | 35.0% |
| !! | TTCTGTAACTCGTGCTTTTT+GGG | + | chr4.3:21381166-21381185 | None:intergenic | 35.0% |
| AAAGAAAACGAGGGAAGAGA+AGG | - | chr4.3:21379989-21380008 | MS.gene40102:intron | 40.0% | |
| AAAGCACGAGTTACAGAACA+AGG | - | chr4.3:21381168-21381187 | MS.gene40102:intron | 40.0% | |
| AACTCAAAACTGGTGCAATG+GGG | + | chr4.3:21380702-21380721 | None:intergenic | 40.0% | |
| AGAACCCACAAGATTTACCT+CGG | + | chr4.3:21381214-21381233 | None:intergenic | 40.0% | |
| ATTCCTCACTCGTGATATCA+GGG | + | chr4.3:21380763-21380782 | None:intergenic | 40.0% | |
| CAGAAATGGAATGAGTTCAG+TGG | - | chr4.3:21379919-21379938 | MS.gene40102:intron | 40.0% | |
| CGCATACCATACATACTTGT+TGG | - | chr4.3:21380812-21380831 | MS.gene40102:CDS | 40.0% | |
| CGGTCACTACAAAAACTTGA+TGG | + | chr4.3:21381879-21381898 | None:intergenic | 40.0% | |
| CTGAACTCATTCCATTTCTG+CGG | + | chr4.3:21379919-21379938 | None:intergenic | 40.0% | |
| GAACTCAAAACTGGTGCAAT+GGG | + | chr4.3:21380703-21380722 | None:intergenic | 40.0% | |
| GAATCCGAGGTAAATCTTGT+GGG | - | chr4.3:21381207-21381226 | MS.gene40102:intron | 40.0% | |
| GCAAATAGCATACCAACATC+AGG | + | chr4.3:21381465-21381484 | None:intergenic | 40.0% | |
| GTCCTAGCCTATGAATAAAG+AGG | - | chr4.3:21381319-21381338 | MS.gene40102:intron | 40.0% | |
| TATTCCTCACTCGTGATATC+AGG | + | chr4.3:21380764-21380783 | None:intergenic | 40.0% | |
| TCAGCTTCAAACAACCAAAG+TGG | + | chr4.3:21380659-21380678 | None:intergenic | 40.0% | |
| TCTTGAGACACTTGATTACC+TGG | - | chr4.3:21381131-21381150 | MS.gene40102:intron | 40.0% | |
| TGAATCCGAGGTAAATCTTG+TGG | - | chr4.3:21381206-21381225 | MS.gene40102:intron | 40.0% | |
| TGCCATAACATTTGAATCCG+AGG | - | chr4.3:21381194-21381213 | MS.gene40102:intron | 40.0% | |
| TTGCCTCCAAATGATTCCAA+TGG | - | chr4.3:21380463-21380482 | MS.gene40102:CDS | 40.0% | |
| TTGGAATCATTTGGAGGCAA+AGG | + | chr4.3:21380463-21380482 | None:intergenic | 40.0% | |
| ! | AGTTTTTGTAGTGACCGACT+AGG | - | chr4.3:21381882-21381901 | MS.gene40102:CDS | 40.0% |
| ! | ATTCCTCCTCGTATTGCTTT+TGG | + | chr4.3:21380224-21380243 | None:intergenic | 40.0% |
| ! | GTCGACAAAGGATTTTCCAT+TGG | + | chr4.3:21380482-21380501 | None:intergenic | 40.0% |
| ! | GTTCTGTAACTCGTGCTTTT+TGG | + | chr4.3:21381167-21381186 | None:intergenic | 40.0% |
| !! | GTTCTTCTTTTCTGCCACTT+TGG | - | chr4.3:21380642-21380661 | MS.gene40102:intron | 40.0% |
| !! | TAACTCGTGCTTTTTGGGAA+AGG | + | chr4.3:21381161-21381180 | None:intergenic | 40.0% |
| AAACCTGTGAACTTGAAGCC+TGG | - | chr4.3:21381816-21381835 | MS.gene40102:CDS | 45.0% | |
| AATTCAGCGAAAACTCCGAC+AGG | - | chr4.3:21380092-21380111 | MS.gene40102:CDS | 45.0% | |
| ACTGCTATTCACAAGCTGCA+AGG | - | chr4.3:21379692-21379711 | MS.gene40102:intron | 45.0% | |
| ACTTCATGGCGTAATGAGCA+GGG | - | chr4.3:21379663-21379682 | MS.gene40102:intron | 45.0% | |
| ATAAACACGATCCACCTGCT+CGG | + | chr4.3:21381367-21381386 | None:intergenic | 45.0% | |
| CCAAAACTATCAGGGTGAGA+AGG | + | chr4.3:21381039-21381058 | None:intergenic | 45.0% | |
| CTGAAGAAGATGTGAAGTGC+TGG | - | chr4.3:21380518-21380537 | MS.gene40102:CDS | 45.0% | |
| CTGTCGTAAGAGACACTCTA+AGG | + | chr4.3:21380728-21380747 | None:intergenic | 45.0% | |
| GAAGAAATCGAAGTCGATGG+TGG | - | chr4.3:21381737-21381756 | MS.gene40102:intron | 45.0% | |
| GAATCATTTGGAGGCAAAGG+AGG | + | chr4.3:21380460-21380479 | None:intergenic | 45.0% | |
| GACTTCGATTTCTTCTCCCA+TGG | + | chr4.3:21381732-21381751 | None:intergenic | 45.0% | |
| GGAACTCAAAACTGGTGCAA+TGG | + | chr4.3:21380704-21380723 | None:intergenic | 45.0% | |
| GGAGAAGAAATCGAAGTCGA+TGG | - | chr4.3:21381734-21381753 | MS.gene40102:intron | 45.0% | |
| TAACCCTGATATCACGAGTG+AGG | - | chr4.3:21380757-21380776 | MS.gene40102:CDS | 45.0% | |
| TCACTCGTGATATCAGGGTT+AGG | + | chr4.3:21380758-21380777 | None:intergenic | 45.0% | |
| TCAGCCTGTCACCAATATCA+AGG | + | chr4.3:21381677-21381696 | None:intergenic | 45.0% | |
| TTTGAGTAGCAGGTCGACAA+AGG | + | chr4.3:21380494-21380513 | None:intergenic | 45.0% | |
| ! | AGAGTGTCTCTTACGACAGA+TGG | - | chr4.3:21380729-21380748 | MS.gene40102:CDS | 45.0% |
| ! | CCTTCTCACCCTGATAGTTT+TGG | - | chr4.3:21381036-21381055 | MS.gene40102:CDS | 45.0% |
| ! | TCGTAAGAGACACTCTAAGG+CGG | + | chr4.3:21380725-21380744 | None:intergenic | 45.0% |
| ! | TCTAAGGCGGAACTCAAAAC+TGG | + | chr4.3:21380712-21380731 | None:intergenic | 45.0% |
| !! | CTTTTTGGGAAAGGTTGTCC+AGG | + | chr4.3:21381152-21381171 | None:intergenic | 45.0% |
| !! | GTTTACTGTCGGTGCTAATC+AGG | - | chr4.3:21379769-21379788 | MS.gene40102:intron | 45.0% |
| !! | TCGCAGTTCTAGATCATGAG+AGG | - | chr4.3:21381406-21381425 | MS.gene40102:intron | 45.0% |
| AAGGAAGGTCTCCCTGATGT+TGG | - | chr4.3:21381450-21381469 | MS.gene40102:intron | 50.0% | |
| CACTTCATGGCGTAATGAGC+AGG | - | chr4.3:21379662-21379681 | MS.gene40102:intron | 50.0% | |
| CACTTCTGTCGAGACCTAGT+CGG | + | chr4.3:21381899-21381918 | None:intergenic | 50.0% | |
| CGTGACATCAAAGCCGAACA+AGG | - | chr4.3:21381589-21381608 | MS.gene40102:CDS | 50.0% | |
| CTTCATGGCGTAATGAGCAG+GGG | - | chr4.3:21379664-21379683 | MS.gene40102:intron | 50.0% | |
| CTTCTCCCATGGATTCCACA+CGG | + | chr4.3:21381721-21381740 | None:intergenic | 50.0% | |
| GCATTCAACCACCACAGAGT+TGG | - | chr4.3:21380064-21380083 | MS.gene40102:CDS | 50.0% | |
| GCGAAAACTCCGACAGGATA+TGG | - | chr4.3:21380098-21380117 | MS.gene40102:CDS | 50.0% | |
| GTTTGGAAACTGTGGATCGC+TGG | - | chr4.3:21380384-21380403 | MS.gene40102:intron | 50.0% | |
| TCATTTGGAGGCAAAGGAGG+AGG | + | chr4.3:21380457-21380476 | None:intergenic | 50.0% | |
| TGTGAACTTGAAGCCTGGAG+AGG | - | chr4.3:21381821-21381840 | MS.gene40102:CDS | 50.0% | |
| TGTTTCTTTGTGCAGCCGTG+TGG | - | chr4.3:21381703-21381722 | MS.gene40102:intron | 50.0% | |
| TTCATGGCGTAATGAGCAGG+GGG | - | chr4.3:21379665-21379684 | MS.gene40102:intron | 50.0% | |
| ! | AAGGCGCCAAAAGCAATACG+AGG | - | chr4.3:21380215-21380234 | MS.gene40102:intron | 50.0% |
| ! | TCTCCAGGCTTCAAGTTCAC+AGG | + | chr4.3:21381822-21381841 | None:intergenic | 50.0% |
| !! | ATGTGAAGTGCTGGCCACAT+AGG | - | chr4.3:21380527-21380546 | MS.gene40102:CDS | 50.0% |
| !! | TCGAAGTCGATGGTGGACTT+TGG | - | chr4.3:21381744-21381763 | MS.gene40102:intron | 50.0% |
| ACTTGAAGCCTGGAGAGGAG+TGG | - | chr4.3:21381826-21381845 | MS.gene40102:CDS | 55.0% | |
| ATGGAGCGCAGGTCACTTCA+TGG | - | chr4.3:21379649-21379668 | MS.gene40102:intron | 55.0% | |
| CGACTAGGTCTCGACAGAAG+TGG | - | chr4.3:21381897-21381916 | MS.gene40102:CDS | 55.0% | |
| GATCCACCTGCTCGGAAGAA+AGG | + | chr4.3:21381359-21381378 | None:intergenic | 55.0% | |
| GATCCTTTCTTCCGAGCAGG+TGG | - | chr4.3:21381353-21381372 | MS.gene40102:intron | 55.0% | |
| GCGCCAAAAGCAATACGAGG+AGG | - | chr4.3:21380218-21380237 | MS.gene40102:intron | 55.0% | |
| GGTAAGCTTACATGGAGCGC+AGG | - | chr4.3:21379638-21379657 | MS.gene40102:intron | 55.0% | |
| GTCGATCCTTTCTTCCGAGC+AGG | - | chr4.3:21381350-21381369 | MS.gene40102:intron | 55.0% | |
| GTTGTACTTCGGACCCCACA+AGG | - | chr4.3:21379422-21379441 | MS.gene40102:CDS | 55.0% | |
| TGCAGCCGTGTGGAATCCAT+GGG | - | chr4.3:21381713-21381732 | MS.gene40102:intron | 55.0% | |
| AAGCCTGGAGAGGAGTGGAC+AGG | - | chr4.3:21381831-21381850 | MS.gene40102:CDS | 60.0% | |
| AGCCTGGAGAGGAGTGGACA+GGG | - | chr4.3:21381832-21381851 | MS.gene40102:CDS | 60.0% | |
| GTGCAGCCGTGTGGAATCCA+TGG | - | chr4.3:21381712-21381731 | MS.gene40102:intron | 60.0% | |
| TGTGGATCGCTGGAGCTGCA+TGG | - | chr4.3:21380394-21380413 | MS.gene40102:intron | 60.0% | |
| CTCCCTGTCCACTCCTCTCC+AGG | + | chr4.3:21381837-21381856 | None:intergenic | 65.0% | |
| CTGGAGAGGAGTGGACAGGG+AGG | - | chr4.3:21381835-21381854 | MS.gene40102:CDS | 65.0% | |
| ! | GGGGCATTCGGCAGCTGTGT+GGG | - | chr4.3:21379349-21379368 | MS.gene40102:CDS | 65.0% |
| ! | TCGGACCCCACAAGGCGCTT+CGG | - | chr4.3:21379430-21379449 | MS.gene40102:CDS | 65.0% |
| ! | TGGGGCATTCGGCAGCTGTG+TGG | - | chr4.3:21379348-21379367 | MS.gene40102:CDS | 65.0% |
| ! | ACCCGTGCCGAAGCGCCTTG+TGG | + | chr4.3:21379440-21379459 | None:intergenic | 70.0% |
| ! | CCCACAAGGCGCTTCGGCAC+GGG | - | chr4.3:21379436-21379455 | MS.gene40102:CDS | 70.0% |
| ! | CCCCACAAGGCGCTTCGGCA+CGG | - | chr4.3:21379435-21379454 | MS.gene40102:CDS | 70.0% |
| ! | CCCGTGCCGAAGCGCCTTGT+GGG | + | chr4.3:21379439-21379458 | None:intergenic | 70.0% |
| ! | CCGTGCCGAAGCGCCTTGTG+GGG | + | chr4.3:21379438-21379457 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 21379347 | 21381926 | 21379347 | ID=MS.gene40102 |
| chr4.3 | mRNA | 21379347 | 21381926 | 21379347 | ID=MS.gene40102.t1;Parent=MS.gene40102 |
| chr4.3 | exon | 21381816 | 21381926 | 21381816 | ID=MS.gene40102.t1.exon1;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21381816 | 21381926 | 21381816 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| chr4.3 | exon | 21381560 | 21381634 | 21381560 | ID=MS.gene40102.t1.exon2;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21381560 | 21381634 | 21381560 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| chr4.3 | exon | 21381011 | 21381067 | 21381011 | ID=MS.gene40102.t1.exon3;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21381011 | 21381067 | 21381011 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| chr4.3 | exon | 21380725 | 21380888 | 21380725 | ID=MS.gene40102.t1.exon4;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21380725 | 21380888 | 21380725 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| chr4.3 | exon | 21380426 | 21380560 | 21380426 | ID=MS.gene40102.t1.exon5;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21380426 | 21380560 | 21380426 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| chr4.3 | exon | 21380058 | 21380160 | 21380058 | ID=MS.gene40102.t1.exon6;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21380058 | 21380160 | 21380058 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| chr4.3 | exon | 21379802 | 21379901 | 21379802 | ID=MS.gene40102.t1.exon7;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21379802 | 21379901 | 21379802 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| chr4.3 | exon | 21379347 | 21379555 | 21379347 | ID=MS.gene40102.t1.exon8;Parent=MS.gene40102.t1 |
| chr4.3 | CDS | 21379347 | 21379555 | 21379347 | ID=cds.MS.gene40102.t1;Parent=MS.gene40102.t1 |
| Gene Sequence |
| Protein sequence |
