AlfalfaGEDB | MS.gene40467

M. sativa cultivar XinJiangDaYe / MS.gene40467

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF06239.14 PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40467.t1	XP_024640114.1	92.5	308	19	1	1	304	1	308	9.20E-161	577

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40467.t1	Q9LUJ4	43.8	306	149	8	1	292	1	297	3.4e-55	217.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40467.t1	G7K3R0	92.5	308	19	1	1	304	1	308	6.6e-161	577.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049207	MS.gene40467	0.821057	4.94E-53	-1.69E-46
MS.gene049824	MS.gene40467	0.843927	1.04E-58	-1.69E-46
MS.gene049825	MS.gene40467	0.830655	2.60E-55	-1.69E-46
MS.gene049873	MS.gene40467	0.816784	4.63E-52	-1.69E-46
MS.gene051700	MS.gene40467	0.801201	1.01E-48	-1.69E-46
MS.gene052582	MS.gene40467	0.810005	1.43E-50	-1.69E-46
MS.gene052584	MS.gene40467	0.810701	1.01E-50	-1.69E-46
MS.gene053226	MS.gene40467	0.812478	4.15E-51	-1.69E-46
MS.gene055778	MS.gene40467	0.803559	3.29E-49	-1.69E-46
MS.gene055808	MS.gene40467	0.849188	3.80E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene022444	MS.gene40467	PPI
MS.gene29781	MS.gene40467	PPI
MS.gene35476	MS.gene40467	PPI
MS.gene35477	MS.gene40467	PPI
MS.gene98283	MS.gene40467	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40467.t1	MTR_5g006640	94.756	553	25	1	1	549	1	553	0.0	1066
MS.gene40467.t1	MTR_1g056160	38.991	436	257	6	112	539	47	481	3.86e-103	319
MS.gene40467.t1	MTR_1g056160	38.991	436	257	6	112	539	64	498	8.51e-103	319
MS.gene40467.t1	MTR_7g029515	38.571	420	253	4	124	539	63	481	1.05e-102	318
MS.gene40467.t1	MTR_3g088505	31.713	432	291	4	96	526	28	456	3.34e-75	246
MS.gene40467.t1	MTR_3g088505	24.845	322	235	5	146	465	150	466	4.93e-21	96.7
MS.gene40467.t1	MTR_8g071300	32.176	432	283	5	98	523	83	510	1.16e-67	231
MS.gene40467.t1	MTR_3g078580	30.100	402	278	1	117	515	53	454	1.81e-66	224
MS.gene40467.t1	MTR_8g102710	28.211	436	307	4	88	518	30	464	2.66e-65	221
MS.gene40467.t1	MTR_1g108270	27.901	405	288	4	127	528	85	488	3.00e-62	213

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40467.t1	AT3G22670	48.845	563	258	10	1	544	1	552	1.58e-167	487
MS.gene40467.t1	AT3G04130	42.169	415	236	4	128	539	85	498	1.94e-107	331
MS.gene40467.t1	AT3G04130	42.169	415	236	4	128	539	85	498	1.94e-107	331
MS.gene40467.t1	AT1G52640	30.841	428	292	4	99	523	38	464	1.16e-69	233
MS.gene40467.t1	AT3G49730	31.377	443	293	6	88	523	56	494	6.36e-66	226
MS.gene40467.t1	AT1G77360	30.732	410	275	5	120	526	54	457	2.42e-65	220
MS.gene40467.t1	AT1G77360	30.732	410	275	5	120	526	90	493	5.24e-65	221
MS.gene40467.t1	AT1G71060	29.327	416	286	4	97	511	64	472	4.34e-62	213
MS.gene40467.t1	AT1G71060	23.051	295	192	3	229	523	123	382	3.88e-14	75.5
MS.gene40467.t1	AT3G62540	27.765	425	302	4	90	512	122	543	3.27e-61	212

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Find 135 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATCTAAGCCCTGAT+CGG	0.534896	5.3:+1714097	MS.gene40467:CDS
AAAGGTGGCGAGTGAGGTGG+TGG	0.395868	5.3:-1712709	None:intergenic
AAATCACATTGAGGAATTGA+TGG	0.465706	5.3:+1714281	MS.gene40467:CDS
AAATCGTCGTCGGAGTTTGA+AGG	0.517665	5.3:-1712854	None:intergenic
AAATGATCTAAGCCCTGATC+GGG	0.409189	5.3:+1714098	MS.gene40467:CDS
AAATTAGTGAAGGAAATGCG+AGG	0.727638	5.3:+1713238	MS.gene40467:CDS
AAGGAAATGCGAGGATTTGA+AGG	0.460590	5.3:+1713247	MS.gene40467:CDS
AATCGTCGTCGGAGTTTGAA+GGG	0.459848	5.3:-1712853	None:intergenic
AATCTCCTGAACTTCCACCA+TGG	0.632699	5.3:+1712807	MS.gene40467:CDS
AATCTGCATAACCAAATTGT+TGG	0.414776	5.3:-1713071	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCACATTGAGGAATTGA+TGG	+	chr5.3:1714281-1714300	MS.gene40467:CDS	30.0%
AATCTGCATAACCAAATTGT+TGG	-	chr5.3:1713074-1713093	None:intergenic	30.0%
AATGGAGAAAAATCACATTG+AGG	+	chr5.3:1714272-1714291	MS.gene40467:CDS	30.0%
ACTTATACTATTCTGTTGCT+CGG	+	chr5.3:1713703-1713722	MS.gene40467:CDS	30.0%
ATACAATGAGTAAGGTAATG+AGG	+	chr5.3:1713284-1713303	MS.gene40467:CDS	30.0%
ATAGTATAAGTCACAGCATT+CGG	-	chr5.3:1713694-1713713	None:intergenic	30.0%
GGAATATGAAAGAATGAAGA+AGG	+	chr5.3:1713762-1713781	MS.gene40467:CDS	30.0%
TATGAAAGAATGAAGAAGGA+TGG	+	chr5.3:1713766-1713785	MS.gene40467:CDS	30.0%
AAAATGATCTAAGCCCTGAT+CGG	+	chr5.3:1714097-1714116	MS.gene40467:CDS	35.0%
AAATTAGTGAAGGAAATGCG+AGG	+	chr5.3:1713238-1713257	MS.gene40467:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	1712686	1714335	1712686	ID=MS.gene40467
chr5.3	mRNA	1712686	1714335	1712686	ID=MS.gene40467.t1;Parent=MS.gene40467
chr5.3	exon	1712686	1714335	1712686	ID=MS.gene40467.t1.exon1;Parent=MS.gene40467.t1
chr5.3	CDS	1712686	1714335	1712686	ID=cds.MS.gene40467.t1;Parent=MS.gene40467.t1

Gene Sequence

>MS.gene40467

ATGTTGTCAAAGTACAGAATCCTCCACCACCTCACTCGCCACCTTTCTCCAAGAATCACCACTGCTCGCAGTTCCAATTTCTTCATCAACCCTTTCTGCACTGTGGTGGTTAACTCTCCTGAATCTCCTGAACTTCCACCATGGGTCATGTTCTCCGATAACCCAACCCCTTCAAACTCCGACGACGATTTCGTTATCCCTTCTCTCGCTCATTGGGTTGATTCCAGCATCCTTCAAACCAAACCCAAACTCTTTGCAAAACCATCTTTGGAAGAAAGCATCCACCTTGAAGATGTTCAAAAAATCAGCACTTTTCTTAAGGAACAGCGTCATTCATCTTATGACCATGTTGCTCAAGCGCTCGACGGTAGTAGTTTTCAGGTTTCCAACAATTTGGTTATGCAGATTTTGAAGAGATTCGGAAATGATTGGGTTGCGGCATATGGTTTTTTCATTTGGGCGAAAAAACAAACACCTTATGTGCATTCTCCTGAAGTGTACAATTTGATGGTTGATATATTGGGGAAAGCTAAGGAATTTGATCTCATGTGGAAATTAGTGAAGGAAATGCGAGGATTTGAAGGGTATGTGAGTTTGGATACAATGAGTAAGGTAATGAGGAGGTTTGCAAAGGCTCAGAGGCATGAAGAAGCTGTGAAAGCGTTTCGCAGAATGGGTGAGTATGGTGTCGAAAAGGATACAGCTGCGCTGAATAAGCTCTTGGATGCTTTGGTGAAAGGACAAAGTATTGAAATTGCTCATAATGTTCTTGATGAGTTTAAGAGTTCCGTTCCGTTGAGTTCTCCGTCGTTCAATATTTTGATAAATGGGTGGTGCAAAGTTAGAAACTTTGAGAAAGCGCGGAAAGTGATGGAGGACAGGAAGGAACATGGGTTTGAGCCGAATGTTTTTACATATAATAATTTCATTGAATCTTATTGTCATGATAAGGATTTTCGCAAAGTTGATGAAGTTTTGGAGGAGATGAGGGGAAATGGTTGTCCTCCGAATGCTGTGACTTATACTATTCTGTTGCTCGGTTACGGGAAGGCAGGGCAATTGAGCAAAGCTTTGGAGGAATATGAAAGAATGAAGAAGGATGGAATTGTGCCCGACACTCCATTTTATAGCTCATTGATGTACATTCTTGGCAAAGCTGGTAGGTTAAAGGATGCTTGTGAGGTTTTTGAGGATATGCCTAAGCAAGGGGTTGTGAGAGATGTGGTGACATACAATACTATGATTAGTACTGCTTGTGCACACTCAAAGGAAGAAACTGCTCTTAGGTTGCTTAAAGAAATGGAAGAAACATCGTGCAAGCCGGATCTTCAGACTTACCATCCTTTACTCAAGATGTGCTGCAAAAAGAAGAGGATGAAGGTGCTCAAGTTTTTGCTGGATCACATGTTTAAAAATGATCTAAGCCCTGATCGGGGAACTTATACGCTTCTGGTGCAGAGTTTGTCTAATAGCGGAAAACTTGTGGAGGCTTGCACATTCTTTGAGGAGATGGTCTCAAAGGGATTTACTCCAATGGAGACCACAGTCAAGCTATTGACACGAAAGCTCGAGATTAAGAGCATGTTAATGGAGAAAAATCACATTGAGGAATTGATGGCGGGACATGTTCTGGGGGAACAAAATGTTTAG

Protein sequence

>MS.gene40467.t1

MLSKYRILHHLTRHLSPRITTARSSNFFINPFCTVVVNSPESPELPPWVMFSDNPTPSNSDDDFVIPSLAHWVDSSILQTKPKLFAKPSLEESIHLEDVQKISTFLKEQRHSSYDHVAQALDGSSFQVSNNLVMQILKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMRGFEGYVSLDTMSKVMRRFAKAQRHEEAVKAFRRMGEYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEDRKEHGFEPNVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFEDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKNDLSPDRGTYTLLVQSLSNSGKLVEACTFFEEMVSKGFTPMETTVKLLTRKLEIKSMLMEKNHIEELMAGHVLGEQNV