AlfalfaGEDB | MS.gene40601

M. sativa cultivar XinJiangDaYe / MS.gene40601

KEGG: K00016
GO: GO:0003674 GO:0003824 GO:0004457 GO:0004459 GO:0005575 GO:0005737 GO:0005975 GO:0006082 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0055114 GO:0071704 GO:0110165
PFAM: PF00056.26 PF02866.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40601.t1	XP_003611291.1	99.7	350	1	0	1	350	1	350	3.40E-193	684.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40601.t1	P22988	66.6	350	109	3	1	343	1	349	3.1e-126	453.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40601.t1	G7JW16	99.7	350	1	0	1	350	1	350	2.5e-193	684.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene015298	MS.gene40601	PPI
MS.gene09641	MS.gene40601	PPI
MS.gene34257	MS.gene40601	PPI
MS.gene21450	MS.gene40601	PPI
MS.gene36022	MS.gene40601	PPI
MS.gene007924	MS.gene40601	PPI
MS.gene40108	MS.gene40601	PPI
MS.gene059657	MS.gene40601	PPI
MS.gene028531	MS.gene40601	PPI
MS.gene053632	MS.gene40601	PPI
MS.gene40601	MS.gene032254	PPI
MS.gene40601	MS.gene21451	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40601.t1	MTR_5g012390	99.714	350	1	0	1	350	1	350	0.0	715
MS.gene40601.t1	MTR_4g101130	86.000	350	49	0	1	350	1	350	0.0	618
MS.gene40601.t1	MTR_4g092690	24.514	257	161	10	39	281	46	283	4.79e-12	66.6
MS.gene40601.t1	MTR_5g014710	24.710	259	160	11	39	282	48	286	7.51e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40601.t1	AT4G17260	77.054	353	78	1	1	350	1	353	0.0	548
MS.gene40601.t1	AT2G22780	24.809	262	162	11	39	285	44	285	1.73e-11	65.1

Find 100 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATTGGTTCAGGAACTAATT+TGG	0.183798	5.3:-5563734	MS.gene40601:CDS
GCTGGGGCTCGCCAGATTAA+TGG	0.260199	5.3:-5563922	MS.gene40601:CDS
GACCTCTGCATCGTCACTGC+TGG	0.269339	5.3:-5563940	MS.gene40601:CDS
TATGAAGTGATCAGTTTAAA+AGG	0.279837	5.3:-5563240	MS.gene40601:CDS
GTTTAAAAGGCTACACTTCT+TGG	0.287297	5.3:-5563227	MS.gene40601:CDS
AGGGTACTCCGTCGCAAATT+TGG	0.306009	5.3:-5563199	MS.gene40601:CDS
TTCCCCTCCAACCGCGTCAT+TGG	0.328564	5.3:-5563751	MS.gene40601:CDS
ACCTCTGCATCGTCACTGCT+GGG	0.330491	5.3:-5563939	MS.gene40601:CDS
CCCTTTGCAAGTACTGAAAC+AGG	0.335982	5.3:+5563141	None:intergenic
ATACACAAAGAGGTTATAAA+TGG	0.340001	5.3:-5563267	MS.gene40601:CDS
CATCAAGATGATCAGCAATA+AGG	0.342388	5.3:+5563692	None:intergenic
TCCAACCGCGTCATTGGTTC+AGG	0.350863	5.3:-5563745	MS.gene40601:CDS
ATCATTGGGACCAGATGGTT+TGG	0.365992	5.3:-5564235	MS.gene40601:CDS
AAAATGCACAAAAGCATATC+AGG	0.366781	5.3:-5564261	MS.gene40601:CDS
CTTGGTAGAGGAGGTGTATT+GGG	0.368641	5.3:-5563069	MS.gene40601:CDS
AAGAGGAAATGAAGAGGCTT+AGG	0.376841	5.3:-5563023	MS.gene40601:CDS
CCTTTGTAGCAAATTCAATC+TGG	0.377803	5.3:+5563894	None:intergenic
ATCTGGACTCGCCATTAATC+TGG	0.381187	5.3:+5563911	None:intergenic
CACAACAAGATCTCAGTTAT+CGG	0.387966	5.3:-5564150	MS.gene40601:CDS
ATCTCGCCTCGTAGCTTGTC+AGG	0.414108	5.3:+5564045	None:intergenic
CTGAATAGTCCGTGGAGGCC+TGG	0.419596	5.3:+5563977	None:intergenic
TTTAAAAGGCTACACTTCTT+GGG	0.420092	5.3:-5563226	MS.gene40601:CDS
TACATTGCTTGGAAACTCTC+TGG	0.433042	5.3:-5563775	MS.gene40601:CDS
AAGCATATCAGGTTCATCAT+TGG	0.435410	5.3:-5564250	MS.gene40601:CDS
CATATTGTAGGCATACATAG+TGG	0.443302	5.3:-5563406	MS.gene40601:intron
ATGTGCTCACTTACATTGCT+TGG	0.446335	5.3:-5563786	MS.gene40601:CDS
AGCATATCAGGTTCATCATT+GGG	0.449605	5.3:-5564249	MS.gene40601:CDS
ATTTGGCTCGAACAATTATG+AGG	0.456393	5.3:-5563182	MS.gene40601:CDS
GCTTGGTAGAGGAGGTGTAT+TGG	0.456494	5.3:-5563070	MS.gene40601:CDS
ATGTAAGTGAGCACATCAAC+AGG	0.458914	5.3:+5563793	None:intergenic
CAAGAACAAGCTCGTCGACT+AGG	0.461803	5.3:+5564079	None:intergenic
TCTTGAGTTGCAGAATCAGT+TGG	0.461924	5.3:-5562983	MS.gene40601:CDS
CGGCGCAGGCAACGTGGGAA+TGG	0.466696	5.3:-5564130	MS.gene40601:CDS
GACTAGGTCTTGTGTTAAGA+TGG	0.470120	5.3:+5564095	None:intergenic
CAAGCTACGAGGCGAGATGC+TGG	0.472234	5.3:-5564040	MS.gene40601:CDS
CTTGAGTTGCAGAATCAGTT+GGG	0.475495	5.3:-5562982	MS.gene40601:CDS
TGAGTTAAGTCCAAACCATC+TGG	0.477368	5.3:+5564225	None:intergenic
TTGTGGCGTTTCGTTGGAGA+AGG	0.483904	5.3:+5564168	None:intergenic
GGAGGCCTGGATCTTAGTGC+GGG	0.491437	5.3:+5563990	None:intergenic
CCCTGTTTCAGTACTTGCAA+AGG	0.493370	5.3:-5563142	MS.gene40601:CDS
GTGACAGTTCAGTGGCACTA+TGG	0.496963	5.3:-5563374	MS.gene40601:CDS
TTGCCTGCACAGCTTGGTAG+AGG	0.498243	5.3:-5563081	MS.gene40601:CDS
CCTCCTCTACCAAGCTGTGC+AGG	0.499160	5.3:+5563078	None:intergenic
GAGAAGGAGGTGAGGCATGT+TGG	0.500290	5.3:+5564184	None:intergenic
GCCTCGTAGCTTGTCAGGAA+TGG	0.502021	5.3:+5564050	None:intergenic
ATCTTGTTGTGGCGTTTCGT+TGG	0.512022	5.3:+5564162	None:intergenic
CCTGTTTCAGTACTTGCAAA+GGG	0.514853	5.3:-5563141	MS.gene40601:CDS
AGAGGAAATGAAGAGGCTTA+GGG	0.518669	5.3:-5563022	MS.gene40601:CDS
CCAGATTGAATTTGCTACAA+AGG	0.522205	5.3:-5563894	MS.gene40601:CDS
GGCTACACTTCTTGGGCCAT+AGG	0.526002	5.3:-5563219	MS.gene40601:CDS
AGTGAGCACATCAACAGGAT+TGG	0.527203	5.3:+5563798	None:intergenic
ATATTGTAGGCATACATAGT+GGG	0.528803	5.3:-5563405	MS.gene40601:intron
AACCAATGACGCGGTTGGAG+GGG	0.528879	5.3:+5563749	None:intergenic
GATGATCAGCAATAAGGAAA+CGG	0.530476	5.3:+5563698	None:intergenic
CCTGCACAGCTTGGTAGAGG+AGG	0.533540	5.3:-5563078	MS.gene40601:CDS
AGGAGGTGAGGCATGTTGGA+TGG	0.541391	5.3:+5564188	None:intergenic
TGGTCAAGCATTAGTGTTGG+AGG	0.542005	5.3:-5563354	MS.gene40601:CDS
ATTAGTTTGCCTGCACAGCT+TGG	0.543386	5.3:-5563087	MS.gene40601:CDS
GAACCAATGACGCGGTTGGA+GGG	0.548021	5.3:+5563748	None:intergenic
GCTACACTTCTTGGGCCATA+GGG	0.551111	5.3:-5563218	MS.gene40601:CDS
GGTTCATCATTGGGACCAGA+TGG	0.553995	5.3:-5564240	MS.gene40601:CDS
TGGCGTTTCGTTGGAGAAGG+AGG	0.556154	5.3:+5564171	None:intergenic
TGAACCAATGACGCGGTTGG+AGG	0.560747	5.3:+5563747	None:intergenic
ATTTGCGACGGAGTACCCTA+TGG	0.561442	5.3:+5563203	None:intergenic
TCCTGAACCAATGACGCGGT+TGG	0.564746	5.3:+5563744	None:intergenic
ATGTTGGATGGACTTGAAGA+AGG	0.565700	5.3:+5564200	None:intergenic
CACTAAGATCCAGGCCTCCA+CGG	0.566976	5.3:-5563986	MS.gene40601:CDS
AAGATCTCAGTTATCGGCGC+AGG	0.570093	5.3:-5564144	MS.gene40601:CDS
GAACAATTATGAGGAATCAA+AGG	0.573740	5.3:-5563173	MS.gene40601:CDS
ACGGACTATTCAGTGACGAT+GGG	0.573834	5.3:-5563967	MS.gene40601:CDS
GCTAGAGAACATACACAAAG+AGG	0.577375	5.3:-5563277	MS.gene40601:CDS
TAATATTCATATGACTGAAG+AGG	0.582508	5.3:-5563040	MS.gene40601:CDS
CTATGGTCAAGCATTAGTGT+TGG	0.582886	5.3:-5563357	MS.gene40601:CDS
TGTTAATGCTCAAGATGTGC+AGG	0.582927	5.3:-5563671	MS.gene40601:intron
CACGGACTATTCAGTGACGA+TGG	0.583882	5.3:-5563968	MS.gene40601:CDS
CCCCAGCAGTGACGATGCAG+AGG	0.586925	5.3:+5563938	None:intergenic
GTTATCGGCGCAGGCAACGT+GGG	0.604202	5.3:-5564135	MS.gene40601:CDS
TGGAGGCCTGGATCTTAGTG+CGG	0.606000	5.3:+5563989	None:intergenic
CCTCTGCATCGTCACTGCTG+GGG	0.608669	5.3:-5563938	MS.gene40601:CDS
TATTGTAGGCATACATAGTG+GGG	0.617018	5.3:-5563404	MS.gene40601:intron
GAGGCCTGGATCTTAGTGCG+GGG	0.617664	5.3:+5563991	None:intergenic
AGTTATCGGCGCAGGCAACG+TGG	0.623394	5.3:-5564136	MS.gene40601:CDS
AGGCCTGGATCTTAGTGCGG+GGG	0.630067	5.3:+5563992	None:intergenic
TGACTGAAGAGGAAATGAAG+AGG	0.635441	5.3:-5563029	MS.gene40601:CDS
GGAACATGGTGACAGTTCAG+TGG	0.640556	5.3:-5563382	MS.gene40601:CDS
ACAATTAGAAGAACACAATG+AGG	0.641975	5.3:+5563823	None:intergenic
TGTTCGAGCCAAATTTGCGA+CGG	0.645980	5.3:+5563191	None:intergenic
TGAGGAGAGTAACGAACCAA+AGG	0.646562	5.3:+5563841	None:intergenic
CGATAACTGAGATCTTGTTG+TGG	0.649606	5.3:+5564151	None:intergenic
GGAGAGTAACGAACCAAAGG+TGG	0.659475	5.3:+5563844	None:intergenic
AATAAGGAAACGGAAGCGAG+AGG	0.662348	5.3:+5563708	None:intergenic
CCTTTGCAAGTACTGAAACA+GGG	0.664039	5.3:+5563142	None:intergenic
CATCGTCACTGAATAGTCCG+TGG	0.664896	5.3:+5563969	None:intergenic
TTTCGTTGGAGAAGGAGGTG+AGG	0.681321	5.3:+5564176	None:intergenic
ATTGTAGGCATACATAGTGG+GGG	0.689959	5.3:-5563403	MS.gene40601:intron
CGGACTATTCAGTGACGATG+GGG	0.708696	5.3:-5563966	MS.gene40601:CDS
GATGCTGGATCTACAGCACG+CGG	0.713694	5.3:-5564025	MS.gene40601:CDS
ACCATTCCTGACAAGCTACG+AGG	0.715464	5.3:-5564051	MS.gene40601:CDS
CGTCACTGAATAGTCCGTGG+AGG	0.718203	5.3:+5563972	None:intergenic
TAGTTCCTGAACCAATGACG+CGG	0.731349	5.3:+5563740	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATATATTTTTTAAGCAATA+AGG	+	chr5.3:5563600-5563619	None:intergenic	10.0%
!!	TAAAAAAATTATACCACCTT+TGG	-	chr5.3:5563376-5563395	MS.gene40601:CDS	20.0%
!!!	TCAGTTTAATTTCATATTGT+AGG	-	chr5.3:5563815-5563834	MS.gene40601:CDS	20.0%
!	ATACACAAAGAGGTTATAAA+TGG	-	chr5.3:5563966-5563985	MS.gene40601:CDS	25.0%
!	TAATATTCATATGACTGAAG+AGG	-	chr5.3:5564193-5564212	MS.gene40601:CDS	25.0%
!	TATGAAGTGATCAGTTTAAA+AGG	-	chr5.3:5563993-5564012	MS.gene40601:CDS	25.0%
!!!	TAGTGAGTTTGCTAAAATTA+CGG	+	chr5.3:5563701-5563720	None:intergenic	25.0%
	ACAATTAGAAGAACACAATG+AGG	+	chr5.3:5563413-5563432	None:intergenic	30.0%
	ATATTGTAGGCATACATAGT+GGG	-	chr5.3:5563828-5563847	MS.gene40601:CDS	30.0%
	GAACAATTATGAGGAATCAA+AGG	-	chr5.3:5564060-5564079	MS.gene40601:CDS	30.0%
	TTTAAAAGGCTACACTTCTT+GGG	-	chr5.3:5564007-5564026	MS.gene40601:CDS	30.0%
!	TTGCTATTACATTGCATGTT+TGG	+	chr5.3:5563729-5563748	None:intergenic	30.0%
	AAGCATATCAGGTTCATCAT+TGG	-	chr5.3:5562983-5563002	MS.gene40601:CDS	35.0%
	AGCATATCAGGTTCATCATT+GGG	-	chr5.3:5562984-5563003	MS.gene40601:CDS	35.0%
	CACAACAAGATCTCAGTTAT+CGG	-	chr5.3:5563083-5563102	MS.gene40601:CDS	35.0%
	CATATTGTAGGCATACATAG+TGG	-	chr5.3:5563827-5563846	MS.gene40601:CDS	35.0%
	CATCAAGATGATCAGCAATA+AGG	+	chr5.3:5563544-5563563	None:intergenic	35.0%
	CCTTTGTAGCAAATTCAATC+TGG	+	chr5.3:5563342-5563361	None:intergenic	35.0%
	GATGATCAGCAATAAGGAAA+CGG	+	chr5.3:5563538-5563557	None:intergenic	35.0%
	GTTTAAAAGGCTACACTTCT+TGG	-	chr5.3:5564006-5564025	MS.gene40601:CDS	35.0%
	TATTGTAGGCATACATAGTG+GGG	-	chr5.3:5563829-5563848	MS.gene40601:CDS	35.0%
!	ATTTGGCTCGAACAATTATG+AGG	-	chr5.3:5564051-5564070	MS.gene40601:CDS	35.0%
!	GTACTTGCAAAGGGATTTTA+TGG	-	chr5.3:5564101-5564120	MS.gene40601:CDS	35.0%
!	TAAAATTACGGCTGCGATTT+TGG	+	chr5.3:5563689-5563708	None:intergenic	35.0%
!!	AAGGGATTTTATGGCATTGA+TGG	-	chr5.3:5564110-5564129	MS.gene40601:CDS	35.0%
!!	CATTGGTTCAGGAACTAATT+TGG	-	chr5.3:5563499-5563518	MS.gene40601:intron	35.0%
!!	CCAGATTGAATTTGCTACAA+AGG	-	chr5.3:5563339-5563358	MS.gene40601:CDS	35.0%
	AAGAGGAAATGAAGAGGCTT+AGG	-	chr5.3:5564210-5564229	MS.gene40601:CDS	40.0%
	AGAGGAAATGAAGAGGCTTA+GGG	-	chr5.3:5564211-5564230	MS.gene40601:CDS	40.0%
	ATGTAAGTGAGCACATCAAC+AGG	+	chr5.3:5563443-5563462	None:intergenic	40.0%
	ATGTGCTCACTTACATTGCT+TGG	-	chr5.3:5563447-5563466	MS.gene40601:intron	40.0%
	ATTGTAGGCATACATAGTGG+GGG	-	chr5.3:5563830-5563849	MS.gene40601:CDS	40.0%
	CCTGTTTCAGTACTTGCAAA+GGG	-	chr5.3:5564092-5564111	MS.gene40601:CDS	40.0%
	CGATAACTGAGATCTTGTTG+TGG	+	chr5.3:5563085-5563104	None:intergenic	40.0%
	CTATGGTCAAGCATTAGTGT+TGG	-	chr5.3:5563876-5563895	MS.gene40601:CDS	40.0%
	GCTAGAGAACATACACAAAG+AGG	-	chr5.3:5563956-5563975	MS.gene40601:CDS	40.0%
	TACATTGCTTGGAAACTCTC+TGG	-	chr5.3:5563458-5563477	MS.gene40601:intron	40.0%
	TGACTGAAGAGGAAATGAAG+AGG	-	chr5.3:5564204-5564223	MS.gene40601:CDS	40.0%
	TGAGTTAAGTCCAAACCATC+TGG	+	chr5.3:5563011-5563030	None:intergenic	40.0%
	TGTTAATGCTCAAGATGTGC+AGG	-	chr5.3:5563562-5563581	MS.gene40601:intron	40.0%
	TTCTCCAAAAAGCTTAGCAC+TGG	+	chr5.3:5563909-5563928	None:intergenic	40.0%
!	ATGTTGGATGGACTTGAAGA+AGG	+	chr5.3:5563036-5563055	None:intergenic	40.0%
!	CTTGAGTTGCAGAATCAGTT+GGG	-	chr5.3:5564251-5564270	MS.gene40601:CDS	40.0%
!	GACTAGGTCTTGTGTTAAGA+TGG	+	chr5.3:5563141-5563160	None:intergenic	40.0%
!	TCTTGAGTTGCAGAATCAGT+TGG	-	chr5.3:5564250-5564269	MS.gene40601:CDS	40.0%
!	TGTTCCAGTGCTAAGCTTTT+TGG	-	chr5.3:5563902-5563921	MS.gene40601:CDS	40.0%
!!	CCTTTGCAAGTACTGAAACA+GGG	+	chr5.3:5564094-5564113	None:intergenic	40.0%
!!!	GGATTTTATGGCATTGATGG+TGG	-	chr5.3:5564113-5564132	MS.gene40601:CDS	40.0%
	AATAAGGAAACGGAAGCGAG+AGG	+	chr5.3:5563528-5563547	None:intergenic	45.0%
	AGTGAGCACATCAACAGGAT+TGG	+	chr5.3:5563438-5563457	None:intergenic	45.0%
	ATCATTGGGACCAGATGGTT+TGG	-	chr5.3:5562998-5563017	MS.gene40601:CDS	45.0%
	ATCTGGACTCGCCATTAATC+TGG	+	chr5.3:5563325-5563344	None:intergenic	45.0%
	CCCTGTTTCAGTACTTGCAA+AGG	-	chr5.3:5564091-5564110	MS.gene40601:CDS	45.0%
	TAGTTCCTGAACCAATGACG+CGG	+	chr5.3:5563496-5563515	None:intergenic	45.0%
	TGAGGAGAGTAACGAACCAA+AGG	+	chr5.3:5563395-5563414	None:intergenic	45.0%
	TGTTCGAGCCAAATTTGCGA+CGG	+	chr5.3:5564045-5564064	None:intergenic	45.0%
!	ACGGACTATTCAGTGACGAT+GGG	-	chr5.3:5563266-5563285	MS.gene40601:CDS	45.0%
!	ATCTTGTTGTGGCGTTTCGT+TGG	+	chr5.3:5563074-5563093	None:intergenic	45.0%
!	CTTGGTAGAGGAGGTGTATT+GGG	-	chr5.3:5564164-5564183	MS.gene40601:CDS	45.0%
!	TGGTCAAGCATTAGTGTTGG+AGG	-	chr5.3:5563879-5563898	MS.gene40601:CDS	45.0%
!	TTGCGCGCATGTTTGGTAAT+TGG	-	chr5.3:5563643-5563662	MS.gene40601:intron	45.0%
!!	ATTAGTTTGCCTGCACAGCT+TGG	-	chr5.3:5564146-5564165	MS.gene40601:CDS	45.0%
!!	CCCTTTGCAAGTACTGAAAC+AGG	+	chr5.3:5564095-5564114	None:intergenic	45.0%
	AAACATGCGCGCAAGTGCAA+TGG	+	chr5.3:5563637-5563656	None:intergenic	50.0%
	AACATGCGCGCAAGTGCAAT+GGG	+	chr5.3:5563636-5563655	None:intergenic	50.0%
	AAGATCTCAGTTATCGGCGC+AGG	-	chr5.3:5563089-5563108	MS.gene40601:CDS	50.0%
	ACCATTCCTGACAAGCTACG+AGG	-	chr5.3:5563182-5563201	MS.gene40601:CDS	50.0%
	ATTGCACTTGCGCGCATGTT+TGG	-	chr5.3:5563636-5563655	MS.gene40601:intron	50.0%
	CATCGTCACTGAATAGTCCG+TGG	+	chr5.3:5563267-5563286	None:intergenic	50.0%
	CGGACTATTCAGTGACGATG+GGG	-	chr5.3:5563267-5563286	MS.gene40601:CDS	50.0%
	GCTACACTTCTTGGGCCATA+GGG	-	chr5.3:5564015-5564034	MS.gene40601:CDS	50.0%
	GGAACATGGTGACAGTTCAG+TGG	-	chr5.3:5563851-5563870	MS.gene40601:CDS	50.0%
	GGAGAGTAACGAACCAAAGG+TGG	+	chr5.3:5563392-5563411	None:intergenic	50.0%
	GGTTCATCATTGGGACCAGA+TGG	-	chr5.3:5562993-5563012	MS.gene40601:CDS	50.0%
	GTGACAGTTCAGTGGCACTA+TGG	-	chr5.3:5563859-5563878	MS.gene40601:CDS	50.0%
	TTGTGGCGTTTCGTTGGAGA+AGG	+	chr5.3:5563068-5563087	None:intergenic	50.0%
	TTTCGTTGGAGAAGGAGGTG+AGG	+	chr5.3:5563060-5563079	None:intergenic	50.0%
!	AGGGTACTCCGTCGCAAATT+TGG	-	chr5.3:5564034-5564053	MS.gene40601:CDS	50.0%
!	ATTTGCGACGGAGTACCCTA+TGG	+	chr5.3:5564033-5564052	None:intergenic	50.0%
!	CAAGAACAAGCTCGTCGACT+AGG	+	chr5.3:5563157-5563176	None:intergenic	50.0%
!	CACGGACTATTCAGTGACGA+TGG	-	chr5.3:5563265-5563284	MS.gene40601:CDS	50.0%
!	GCATACATAGTGGGGGAACA+TGG	-	chr5.3:5563837-5563856	MS.gene40601:CDS	50.0%
!	GCTTGGTAGAGGAGGTGTAT+TGG	-	chr5.3:5564163-5564182	MS.gene40601:CDS	50.0%
	AACCAATGACGCGGTTGGAG+GGG	+	chr5.3:5563487-5563506	None:intergenic	55.0%
	ACATGCGCGCAAGTGCAATG+GGG	+	chr5.3:5563635-5563654	None:intergenic	55.0%
	ACCTCTGCATCGTCACTGCT+GGG	-	chr5.3:5563294-5563313	MS.gene40601:CDS	55.0%
	AGGAGGTGAGGCATGTTGGA+TGG	+	chr5.3:5563048-5563067	None:intergenic	55.0%
	CACTAAGATCCAGGCCTCCA+CGG	-	chr5.3:5563247-5563266	MS.gene40601:CDS	55.0%
	CGTCACTGAATAGTCCGTGG+AGG	+	chr5.3:5563264-5563283	None:intergenic	55.0%
	GAACCAATGACGCGGTTGGA+GGG	+	chr5.3:5563488-5563507	None:intergenic	55.0%
	GAGAAGGAGGTGAGGCATGT+TGG	+	chr5.3:5563052-5563071	None:intergenic	55.0%
	GATGCTGGATCTACAGCACG+CGG	-	chr5.3:5563208-5563227	MS.gene40601:CDS	55.0%
	GGCTACACTTCTTGGGCCAT+AGG	-	chr5.3:5564014-5564033	MS.gene40601:CDS	55.0%
	TCCTGAACCAATGACGCGGT+TGG	+	chr5.3:5563492-5563511	None:intergenic	55.0%
	TGAACCAATGACGCGGTTGG+AGG	+	chr5.3:5563489-5563508	None:intergenic	55.0%
	TGGAGGCCTGGATCTTAGTG+CGG	+	chr5.3:5563247-5563266	None:intergenic	55.0%
	TGGCGTTTCGTTGGAGAAGG+AGG	+	chr5.3:5563065-5563084	None:intergenic	55.0%
	TTGCCTGCACAGCTTGGTAG+AGG	-	chr5.3:5564152-5564171	MS.gene40601:CDS	55.0%
!	ATCTCGCCTCGTAGCTTGTC+AGG	+	chr5.3:5563191-5563210	None:intergenic	55.0%
!	GCCTCGTAGCTTGTCAGGAA+TGG	+	chr5.3:5563186-5563205	None:intergenic	55.0%
!!	TCCAACCGCGTCATTGGTTC+AGG	-	chr5.3:5563488-5563507	MS.gene40601:intron	55.0%
	AGGCCTGGATCTTAGTGCGG+GGG	+	chr5.3:5563244-5563263	None:intergenic	60.0%
	AGTTATCGGCGCAGGCAACG+TGG	-	chr5.3:5563097-5563116	MS.gene40601:CDS	60.0%
	CAAGCTACGAGGCGAGATGC+TGG	-	chr5.3:5563193-5563212	MS.gene40601:CDS	60.0%
	CCTCCTCTACCAAGCTGTGC+AGG	+	chr5.3:5564158-5564177	None:intergenic	60.0%
	CCTCTGCATCGTCACTGCTG+GGG	-	chr5.3:5563295-5563314	MS.gene40601:CDS	60.0%
	CCTGCACAGCTTGGTAGAGG+AGG	-	chr5.3:5564155-5564174	MS.gene40601:CDS	60.0%
	CTGAATAGTCCGTGGAGGCC+TGG	+	chr5.3:5563259-5563278	None:intergenic	60.0%
	GACCTCTGCATCGTCACTGC+TGG	-	chr5.3:5563293-5563312	MS.gene40601:CDS	60.0%
	GAGGCCTGGATCTTAGTGCG+GGG	+	chr5.3:5563245-5563264	None:intergenic	60.0%
	GATCTTAGTGCGGGGGAGGA+AGG	+	chr5.3:5563237-5563256	None:intergenic	60.0%
	GCTGGGGCTCGCCAGATTAA+TGG	-	chr5.3:5563311-5563330	MS.gene40601:CDS	60.0%
	GGAGGCCTGGATCTTAGTGC+GGG	+	chr5.3:5563246-5563265	None:intergenic	60.0%
	GTTATCGGCGCAGGCAACGT+GGG	-	chr5.3:5563098-5563117	MS.gene40601:CDS	60.0%
	TTCCCCTCCAACCGCGTCAT+TGG	-	chr5.3:5563482-5563501	MS.gene40601:intron	60.0%
	CCCCAGCAGTGACGATGCAG+AGG	+	chr5.3:5563298-5563317	None:intergenic	65.0%
	CCTCCCCCGCACTAAGATCC+AGG	-	chr5.3:5563238-5563257	MS.gene40601:CDS	65.0%
	CCTGGATCTTAGTGCGGGGG+AGG	+	chr5.3:5563241-5563260	None:intergenic	65.0%
	CGGCGCAGGCAACGTGGGAA+TGG	-	chr5.3:5563103-5563122	MS.gene40601:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	5562975	5564280	5562975	ID=MS.gene40601
chr5.3	mRNA	5562975	5564280	5562975	ID=MS.gene40601.t1;Parent=MS.gene40601
chr5.3	exon	5563672	5564280	5563672	ID=MS.gene40601.t1.exon1;Parent=MS.gene40601.t1
chr5.3	CDS	5563672	5564280	5563672	ID=cds.MS.gene40601.t1;Parent=MS.gene40601.t1
chr5.3	exon	5562975	5563418	5562975	ID=MS.gene40601.t1.exon2;Parent=MS.gene40601.t1
chr5.3	CDS	5562975	5563418	5562975	ID=cds.MS.gene40601.t1;Parent=MS.gene40601.t1

Gene Sequence

>MS.gene40601

ATGCACAAAAGCATATCAGGTTCATCATTGGGACCAGATGGTTTGGACTTAACTCAGTCCTTCTTCAAGTCCATCCAACATGCCTCACCTCCTTCTCCAACGAAACGCCACAACAAGATCTCAGTTATCGGCGCAGGCAACGTGGGAATGGCTATAGCTCAAACCATCTTAACACAAGACCTAGTCGACGAGCTTGTTCTTGTCGACACCATTCCTGACAAGCTACGAGGCGAGATGCTGGATCTACAGCACGCGGCAGCCTTCCTCCCCCGCACTAAGATCCAGGCCTCCACGGACTATTCAGTGACGATGGGGTCTGACCTCTGCATCGTCACTGCTGGGGCTCGCCAGATTAATGGCGAGTCCAGATTGAATTTGCTACAAAGGAATGTTGCTTTGTTTAAAAAAATTATACCACCTTTGGTTCGTTACTCTCCTCATTGTGTTCTTCTAATTGTTTCCAATCCTGTTGATGTGCTCACTTACATTGCTTGGAAACTCTCTGGTTTCCCCTCCAACCGCGTCATTGGTTCAGGAACTAATTTGGACTCCTCTCGCTTCCGTTTCCTTATTGCTGATCATCTTGATGTTAATGCTCAAGATGTGCAGGTACAACTTTTTTCCTTATTGCTTAAAAAATATATATCGTCGATCATTCCCCATTGCACTTGCGCGCATGTTTGGTAATTGGTATCACAGTGAATAGTTTTTCCAAAATCGCAGCCGTAATTTTAGCAAACTCACTATAATACCAAACATGCAATGTAATAGCAATTGCAAAACGTAATTTAGAACTAACACTGATCACGAACGAACACACATAGTAAACTCAATATTTTATCAGTTTAATTTCATATTGTAGGCATACATAGTGGGGGAACATGGTGACAGTTCAGTGGCACTATGGTCAAGCATTAGTGTTGGAGGTGTTCCAGTGCTAAGCTTTTTGGAGAAACAACAAATAGCTTACGAGAAAGAAATGCTAGAGAACATACACAAAGAGGTTATAAATGGCGCATATGAAGTGATCAGTTTAAAAGGCTACACTTCTTGGGCCATAGGGTACTCCGTCGCAAATTTGGCTCGAACAATTATGAGGAATCAAAGGAAGATTCACCCTGTTTCAGTACTTGCAAAGGGATTTTATGGCATTGATGGTGGAGAAGTGTTTATTAGTTTGCCTGCACAGCTTGGTAGAGGAGGTGTATTGGGTGTGACTAATATTCATATGACTGAAGAGGAAATGAAGAGGCTTAGGGACTCTGCTATCACTATTCTTGAGTTGCAGAATCAGTTGGGTATTTGA

Protein sequence

>MS.gene40601.t1

MHKSISGSSLGPDGLDLTQSFFKSIQHASPPSPTKRHNKISVIGAGNVGMAIAQTILTQDLVDELVLVDTIPDKLRGEMLDLQHAAAFLPRTKIQASTDYSVTMGSDLCIVTAGARQINGESRLNLLQRNVALFKKIIPPLVRYSPHCVLLIVSNPVDVLTYIAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYEKEMLENIHKEVINGAYEVISLKGYTSWAIGYSVANLARTIMRNQRKIHPVSVLAKGFYGIDGGEVFISLPAQLGRGGVLGVTNIHMTEEEMKRLRDSAITILELQNQLGI