Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41047.t1 | XP_013441806.1 | 97.7 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 1.40E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41047.t1 | Q54GN8 | 72.3 | 260 | 72 | 0 | 1 | 260 | 1 | 260 | 7.1e-104 | 378.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41047.t1 | A0A072TF50 | 97.7 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 9.8e-139 | 502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67460 | MS.gene41047 | PPI |
| MS.gene41047 | MS.gene59485 | PPI |
| MS.gene41047 | MS.gene07405 | PPI |
| MS.gene017622 | MS.gene41047 | PPI |
| MS.gene89672 | MS.gene41047 | PPI |
| MS.gene68079 | MS.gene41047 | PPI |
| MS.gene051451 | MS.gene41047 | PPI |
| MS.gene41047 | MS.gene85577 | PPI |
| MS.gene41047 | MS.gene64789 | PPI |
| MS.gene44230 | MS.gene41047 | PPI |
| MS.gene07704 | MS.gene41047 | PPI |
| MS.gene41047 | MS.gene004882 | PPI |
| MS.gene41047 | MS.gene012127 | PPI |
| MS.gene062254 | MS.gene41047 | PPI |
| MS.gene41047 | MS.gene064459 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41047.t1 | MTR_0508s0010 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| MS.gene41047.t1 | MTR_3g088865 | 91.923 | 260 | 21 | 0 | 1 | 260 | 1 | 260 | 1.03e-174 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41047.t1 | AT5G06360 | 86.923 | 260 | 34 | 0 | 1 | 260 | 1 | 260 | 4.69e-172 | 475 |
Find 66 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCAATCTTGAAATTAT+TGG | 0.186081 | 1.3:-41883855 | MS.gene41047:CDS |
| AGCTGTTCCTGCTTATCTTT+TGG | 0.213713 | 1.3:-41884838 | MS.gene41047:CDS |
| GACCGTCACATAAAAGAAAA+TGG | 0.314189 | 1.3:-41885399 | MS.gene41047:CDS |
| AGCCTCTCTCTTGCGCTTGC+GGG | 0.318070 | 1.3:+41885356 | None:intergenic |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.337046 | 1.3:+41883129 | None:intergenic |
| GAAACAGACTATTGGTCTTA+AGG | 0.346482 | 1.3:-41885187 | MS.gene41047:intron |
| CAGGTGAATGTCAGCGAACT+TGG | 0.351479 | 1.3:-41883283 | MS.gene41047:CDS |
| GAAGGAGAAGGCTGGGAAAT+GGG | 0.354471 | 1.3:-41884665 | MS.gene41047:CDS |
| GAGGTGTACATGGGGCCATT+AGG | 0.355093 | 1.3:+41883819 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 1.3:+41883870 | None:intergenic |
| GGAAGGAGAAGGCTGGGAAA+TGG | 0.369119 | 1.3:-41884666 | MS.gene41047:CDS |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 1.3:-41883800 | MS.gene41047:CDS |
| GGTTCACAACCACTCTAAAA+AGG | 0.386198 | 1.3:-41885328 | MS.gene41047:CDS |
| AGGTGTACATGGGGCCATTA+GGG | 0.387835 | 1.3:+41883820 | None:intergenic |
| AAACAGACTATTGGTCTTAA+GGG | 0.408363 | 1.3:-41885186 | MS.gene41047:intron |
| ATTCGAGTGAAACAGACTAT+TGG | 0.411760 | 1.3:-41885195 | MS.gene41047:intron |
| CGAATGAATCGCTCATACTT+TGG | 0.413112 | 1.3:+41883933 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 1.3:-41884865 | MS.gene41047:CDS |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.421246 | 1.3:+41883130 | None:intergenic |
| GGAAAAGGGTTAAACCTTCT+GGG | 0.431363 | 1.3:+41885305 | None:intergenic |
| GTTACAAAAGCAACATTTGT+TGG | 0.433060 | 1.3:-41883978 | MS.gene41047:CDS |
| TTACAAAAGCAACATTTGTT+GGG | 0.454651 | 1.3:-41883977 | MS.gene41047:CDS |
| GGCCCCATGTACACCTCTCT+TGG | 0.465138 | 1.3:-41883813 | MS.gene41047:CDS |
| CTTGGACTGGTTACACCTGC+AGG | 0.473860 | 1.3:-41883265 | MS.gene41047:CDS |
| GAGCCTCTCTCTTGCGCTTG+CGG | 0.475580 | 1.3:+41885355 | None:intergenic |
| CCGAAAAGGCACAGATGAAA+AGG | 0.477452 | 1.3:-41885137 | MS.gene41047:CDS |
| CGACTGACATACCTTTGCTC+TGG | 0.490585 | 1.3:+41884800 | None:intergenic |
| AAAGCAACATTTGTTGGGCC+TGG | 0.494371 | 1.3:-41883972 | MS.gene41047:CDS |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 1.3:+41884468 | None:intergenic |
| GAGCGATTCATTCGTCCCAC+TGG | 0.500866 | 1.3:-41883924 | MS.gene41047:CDS |
| ATGAATCGCTCATACTTTGG+TGG | 0.502666 | 1.3:+41883936 | None:intergenic |
| GAATGTCAGCGAACTTGGAC+TGG | 0.509662 | 1.3:-41883278 | MS.gene41047:CDS |
| CCCCACACAACTTTCCCTGC+AGG | 0.510551 | 1.3:+41883250 | None:intergenic |
| TCACGATCCAAAAGATAAGC+AGG | 0.510830 | 1.3:+41884831 | None:intergenic |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 1.3:+41883782 | None:intergenic |
| ACCTGCAGGGAAAGTTGTGT+GGG | 0.521487 | 1.3:-41883251 | MS.gene41047:CDS |
| GACACCAAGAGAGGTGTACA+TGG | 0.523657 | 1.3:+41883809 | None:intergenic |
| TGCGGGTTTCGTGATCGAAA+CGG | 0.524765 | 1.3:+41885373 | None:intergenic |
| CTATTGGTCTTAAGGGAAAG+AGG | 0.536215 | 1.3:-41885179 | MS.gene41047:CDS |
| CACCTGCAGGGAAAGTTGTG+TGG | 0.542031 | 1.3:-41883252 | MS.gene41047:CDS |
| TGCAATCTCACCTTAGGTAG+AGG | 0.542351 | 1.3:+41884637 | None:intergenic |
| AACCCGCAAGCGCAAGAGAG+AGG | 0.557787 | 1.3:-41885358 | MS.gene41047:CDS |
| ATGGGATGTTCCTCTACCTA+AGG | 0.559228 | 1.3:-41884647 | MS.gene41047:intron |
| ATTTCCTCAGGTACGTCCTG+TGG | 0.566309 | 1.3:-41884484 | MS.gene41047:intron |
| GCGCAAGAGAGAGGCTCGTG+AGG | 0.578621 | 1.3:-41885349 | MS.gene41047:CDS |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 1.3:-41884450 | MS.gene41047:CDS |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 1.3:-41883784 | MS.gene41047:intron |
| AGCTAAGCAATGGAAGAGAA+TGG | 0.593298 | 1.3:-41884000 | MS.gene41047:CDS |
| GAATGCAGGTAAATATGCCC+AGG | 0.594561 | 1.3:-41883147 | MS.gene41047:intron |
| ACCAACAACCCAGAAAATGA+TGG | 0.595399 | 1.3:-41883122 | MS.gene41047:CDS |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 1.3:-41883799 | MS.gene41047:CDS |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 1.3:-41883798 | MS.gene41047:CDS |
| TGCATGAAGAGTCAACATCT+AGG | 0.620336 | 1.3:-41884890 | MS.gene41047:CDS |
| TGAAAACACAACCAGAGCAA+AGG | 0.620353 | 1.3:-41884811 | MS.gene41047:intron |
| ACACCAAGAGAGGTGTACAT+GGG | 0.632419 | 1.3:+41883810 | None:intergenic |
| TTTAGTGAAACGCAATCCAG+TGG | 0.635182 | 1.3:+41883908 | None:intergenic |
| TTGGACTGGTTACACCTGCA+GGG | 0.646148 | 1.3:-41883264 | MS.gene41047:CDS |
| AGAGTCAACATCTAGGCGCA+AGG | 0.652247 | 1.3:-41884883 | MS.gene41047:CDS |
| GCTGATGATAATGTTCAGGA+AGG | 0.654350 | 1.3:-41884861 | MS.gene41047:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 1.3:+41883800 | None:intergenic |
| TTAGTGAAACGCAATCCAGT+GGG | 0.670436 | 1.3:+41883909 | None:intergenic |
| CGGTCTATATGATCTCCTTG+AGG | 0.680493 | 1.3:+41885417 | None:intergenic |
| CACCAAGAGAGGTGTACATG+GGG | 0.684428 | 1.3:+41883811 | None:intergenic |
| GGGTTTCGTGATCGAAACGG+CGG | 0.704227 | 1.3:+41885376 | None:intergenic |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 1.3:-41884460 | MS.gene41047:CDS |
| CCTGCAGGGAAAGTTGTGTG+GGG | 0.734788 | 1.3:-41883250 | MS.gene41047:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTATTTCTTAATTAT+AGG | - | chr1.3:41884411-41884430 | MS.gene41047:intron | 10.0% |
| !!! | TAAGAAATAAACATATTTTC+TGG | + | chr1.3:41884406-41884425 | None:intergenic | 15.0% |
| !! | AAAACAACTTAGAACTTATA+TGG | - | chr1.3:41885138-41885157 | MS.gene41047:CDS | 20.0% |
| !! | ACATTCAATCTTGAAATTAT+TGG | - | chr1.3:41884794-41884813 | MS.gene41047:intron | 20.0% |
| !! | ACGTTATTATAACTCAAAAA+AGG | + | chr1.3:41884129-41884148 | None:intergenic | 20.0% |
| !! | ATATTGTCATAAATCTAACT+GGG | - | chr1.3:41883421-41883440 | MS.gene41047:intron | 20.0% |
| !! | GCATAAAATGTTAAAGTAAT+TGG | + | chr1.3:41883395-41883414 | None:intergenic | 20.0% |
| !! | TATATTGTCATAAATCTAAC+TGG | - | chr1.3:41883420-41883439 | MS.gene41047:intron | 20.0% |
| !! | TATTGTTAGTATCAAATTCA+TGG | - | chr1.3:41884302-41884321 | MS.gene41047:intron | 20.0% |
| !! | TGTTATATTTCATGTGTTTA+TGG | - | chr1.3:41883576-41883595 | MS.gene41047:intron | 20.0% |
| !!! | TTTTGATGTTATCATATGAT+GGG | - | chr1.3:41884493-41884512 | MS.gene41047:intron | 20.0% |
| ! | AAGAAAAAACAAATACAGAG+TGG | + | chr1.3:41884067-41884086 | None:intergenic | 25.0% |
| ! | AAGAGTAAGTATTACATCTA+TGG | - | chr1.3:41884229-41884248 | MS.gene41047:intron | 25.0% |
| ! | AATACATTGTAAGCACATTA+CGG | - | chr1.3:41884557-41884576 | MS.gene41047:intron | 25.0% |
| ! | ACATAAACATCATCAAATGA+AGG | + | chr1.3:41883118-41883137 | None:intergenic | 25.0% |
| ! | ACGAAACCAAAATCAAAATA+GGG | + | chr1.3:41883188-41883207 | None:intergenic | 25.0% |
| ! | AGAAAAAACAAATACAGAGT+GGG | + | chr1.3:41884066-41884085 | None:intergenic | 25.0% |
| ! | ATAAACATCATCAAATGAAG+GGG | + | chr1.3:41883116-41883135 | None:intergenic | 25.0% |
| ! | ATTATTTGGCACTTATATCT+TGG | - | chr1.3:41885426-41885445 | MS.gene41047:intron | 25.0% |
| ! | CATAAACATCATCAAATGAA+GGG | + | chr1.3:41883117-41883136 | None:intergenic | 25.0% |
| ! | GAATCATTATCAAAATGTGT+TGG | - | chr1.3:41885319-41885338 | MS.gene41047:intron | 25.0% |
| ! | GTTGATGTTAGATAATAAGT+AGG | - | chr1.3:41883662-41883681 | MS.gene41047:intron | 25.0% |
| ! | TATTCTATGAGCAATTAACA+AGG | - | chr1.3:41885232-41885251 | MS.gene41047:intron | 25.0% |
| ! | TTACAAAAGCAACATTTGTT+GGG | - | chr1.3:41884672-41884691 | MS.gene41047:CDS | 25.0% |
| ! | TTTAACTGATATTGATGCAT+TGG | - | chr1.3:41885469-41885488 | MS.gene41047:intron | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr1.3:41884221-41884240 | None:intergenic | 25.0% |
| !! | TTGGATTTTTATATGAATGC+AGG | - | chr1.3:41885488-41885507 | MS.gene41047:intron | 25.0% |
| !!! | AAATATAGCTTTAGTCTGTT+TGG | - | chr1.3:41885006-41885025 | MS.gene41047:intron | 25.0% |
| !!! | GTTTTGATGTTATCATATGA+TGG | - | chr1.3:41884492-41884511 | MS.gene41047:intron | 25.0% |
| !!! | TAAGTAGGTTTTGATAGATA+TGG | - | chr1.3:41883677-41883696 | MS.gene41047:intron | 25.0% |
| !!! | TTACATCCCTATTTTGATTT+TGG | - | chr1.3:41883179-41883198 | MS.gene41047:intron | 25.0% |
| AAAACACAATGACTTAGAGT+TGG | + | chr1.3:41884477-41884496 | None:intergenic | 30.0% | |
| AAGTACGTGAGTAAATGAAA+AGG | + | chr1.3:41885277-41885296 | None:intergenic | 30.0% | |
| ACAGTAACAGAAAATTCTTG+AGG | + | chr1.3:41883151-41883170 | None:intergenic | 30.0% | |
| AGTACGTGAGTAAATGAAAA+GGG | + | chr1.3:41885276-41885295 | None:intergenic | 30.0% | |
| ATACATTGTAAGCACATTAC+GGG | - | chr1.3:41884558-41884577 | MS.gene41047:intron | 30.0% | |
| ATATCTTGGTTTCATCATCA+TGG | - | chr1.3:41885440-41885459 | MS.gene41047:intron | 30.0% | |
| ATCAATATGCATGCAATCTA+AGG | + | chr1.3:41884585-41884604 | None:intergenic | 30.0% | |
| ATGTGATGACATGATTGAAA+TGG | - | chr1.3:41884277-41884296 | MS.gene41047:intron | 30.0% | |
| ATTTCAATCATGTCATCACA+TGG | + | chr1.3:41884278-41884297 | None:intergenic | 30.0% | |
| ATTTCATGCACTTCTAATTG+AGG | - | chr1.3:41884895-41884914 | MS.gene41047:CDS | 30.0% | |
| CAAGAAAAATTATGCCGAAA+AGG | - | chr1.3:41883498-41883517 | MS.gene41047:intron | 30.0% | |
| CTACATCCATAAACAAAAAG+GGG | + | chr1.3:41884383-41884402 | None:intergenic | 30.0% | |
| GACGAAACCAAAATCAAAAT+AGG | + | chr1.3:41883189-41883208 | None:intergenic | 30.0% | |
| GCTACATCCATAAACAAAAA+GGG | + | chr1.3:41884384-41884403 | None:intergenic | 30.0% | |
| GTTACAAAAGCAACATTTGT+TGG | - | chr1.3:41884671-41884690 | MS.gene41047:CDS | 30.0% | |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr1.3:41884189-41884208 | MS.gene41047:intron | 30.0% | |
| TGTGATGACATGATTGAAAT+GGG | - | chr1.3:41884278-41884297 | MS.gene41047:intron | 30.0% | |
| TTAGTGTATTCAAGAGTTGT+TGG | - | chr1.3:41883640-41883659 | MS.gene41047:intron | 30.0% | |
| ! | ATGTGTATTTTCATTTCCTC+AGG | - | chr1.3:41884153-41884172 | MS.gene41047:intron | 30.0% |
| ! | CTTTTCGGCATAATTTTTCT+TGG | + | chr1.3:41883500-41883519 | None:intergenic | 30.0% |
| ! | GGCTTCTAGTATTATGATTT+TGG | - | chr1.3:41884250-41884269 | MS.gene41047:intron | 30.0% |
| ! | TGAGATGCTGAAATTTTTGT+GGG | - | chr1.3:41884435-41884454 | MS.gene41047:intron | 30.0% |
| ! | TTATGCAACCATCATTTTCT+GGG | + | chr1.3:41885538-41885557 | None:intergenic | 30.0% |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr1.3:41884782-41884801 | None:intergenic | 30.0% |
| ! | TTGAGATGCTGAAATTTTTG+TGG | - | chr1.3:41884434-41884453 | MS.gene41047:intron | 30.0% |
| ! | TTTATGCAACCATCATTTTC+TGG | + | chr1.3:41885539-41885558 | None:intergenic | 30.0% |
| ! | TTTTCCGTTCTCACAATTTA+AGG | - | chr1.3:41884925-41884944 | MS.gene41047:intron | 30.0% |
| !! | AAACAGACTATTGGTCTTAA+GGG | - | chr1.3:41883463-41883482 | MS.gene41047:intron | 30.0% |
| !! | AAATGTGTTGGTCATTTTCT+TGG | - | chr1.3:41885331-41885350 | MS.gene41047:CDS | 30.0% |
| !! | GTTGTTTTCATAATCTATCC+TGG | + | chr1.3:41885126-41885145 | None:intergenic | 30.0% |
| !! | TTTGTATCATTTTAGCCTCA+AGG | - | chr1.3:41883217-41883236 | MS.gene41047:intron | 30.0% |
| AACAAATACAGAGTGGGAAT+TGG | + | chr1.3:41884060-41884079 | None:intergenic | 35.0% | |
| AGACTGTTTGAGAGAGTTTA+TGG | - | chr1.3:41885070-41885089 | MS.gene41047:intron | 35.0% | |
| AGTGATTGAAAAGGTCATGT+GGG | + | chr1.3:41884964-41884983 | None:intergenic | 35.0% | |
| ATCCATAAACAAAAAGGGGA+GGG | + | chr1.3:41884379-41884398 | None:intergenic | 35.0% | |
| ATTCGAGTGAAACAGACTAT+TGG | - | chr1.3:41883454-41883473 | MS.gene41047:intron | 35.0% | |
| CACCATTAAGCAAAAAAGGA+AGG | - | chr1.3:41883966-41883985 | MS.gene41047:CDS | 35.0% | |
| CTTTAGCAAAGAAAGAAGCA+GGG | - | chr1.3:41884084-41884103 | MS.gene41047:intron | 35.0% | |
| GAAGCAGATCTGATTGTATA+TGG | - | chr1.3:41884613-41884632 | MS.gene41047:intron | 35.0% | |
| GACCGTCACATAAAAGAAAA+TGG | - | chr1.3:41883250-41883269 | MS.gene41047:intron | 35.0% | |
| GATGCCTTAAATTGTGAGAA+CGG | + | chr1.3:41884932-41884951 | None:intergenic | 35.0% | |
| GCAACACCATTAAGCAAAAA+AGG | - | chr1.3:41883962-41883981 | MS.gene41047:CDS | 35.0% | |
| GGCTACATCCATAAACAAAA+AGG | + | chr1.3:41884385-41884404 | None:intergenic | 35.0% | |
| GTACATGTCAGTGATTGAAA+AGG | + | chr1.3:41884973-41884992 | None:intergenic | 35.0% | |
| TAAATGAAAAGGGTTCTGTG+TGG | + | chr1.3:41885266-41885285 | None:intergenic | 35.0% | |
| TAAGCAAAAAAGGAAGGAGA+AGG | - | chr1.3:41883972-41883991 | MS.gene41047:CDS | 35.0% | |
| TACATTGTAAGCACATTACG+GGG | - | chr1.3:41884559-41884578 | MS.gene41047:intron | 35.0% | |
| TCGATAGAAGAAGAGGAAAA+GGG | + | chr1.3:41883361-41883380 | None:intergenic | 35.0% | |
| TCTTTAGCAAAGAAAGAAGC+AGG | - | chr1.3:41884083-41884102 | MS.gene41047:intron | 35.0% | |
| TTCGATAGAAGAAGAGGAAA+AGG | + | chr1.3:41883362-41883381 | None:intergenic | 35.0% | |
| TTCTTGGTTACTGTGATTTC+AGG | - | chr1.3:41885347-41885366 | MS.gene41047:CDS | 35.0% | |
| TTGTGTGGGGTAAGATTATT+TGG | - | chr1.3:41885412-41885431 | MS.gene41047:CDS | 35.0% | |
| ! | AAAGTGTTCGATAGAAGAAG+AGG | + | chr1.3:41883368-41883387 | None:intergenic | 35.0% |
| ! | ATCATTTTGCAGCTAAGCAA+TGG | - | chr1.3:41884639-41884658 | MS.gene41047:intron | 35.0% |
| !! | GAAACAGACTATTGGTCTTA+AGG | - | chr1.3:41883462-41883481 | MS.gene41047:intron | 35.0% |
| !! | GGCCATTTTCTTTTATGTGA+CGG | + | chr1.3:41883255-41883274 | None:intergenic | 35.0% |
| !!! | CTCCTTCCTTTTTTGCTTAA+TGG | + | chr1.3:41883971-41883990 | None:intergenic | 35.0% |
| AAAAAAGGAAGGAGAAGGCT+GGG | - | chr1.3:41883977-41883996 | MS.gene41047:CDS | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr1.3:41884184-41884203 | None:intergenic | 40.0% | |
| AACTGTCTTCCAAAACAGCA+TGG | + | chr1.3:41883877-41883896 | None:intergenic | 40.0% | |
| AAGCAGGGAAAGACATGAAA+CGG | - | chr1.3:41884099-41884118 | MS.gene41047:intron | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr1.3:41885527-41885546 | MS.gene41047:intron | 40.0% | |
| AGCTAAGCAATGGAAGAGAA+TGG | - | chr1.3:41884649-41884668 | MS.gene41047:CDS | 40.0% | |
| AGGAAAAGGGTTAAACCTTC+TGG | + | chr1.3:41883348-41883367 | None:intergenic | 40.0% | |
| ATGAATCGCTCATACTTTGG+TGG | + | chr1.3:41884716-41884735 | None:intergenic | 40.0% | |
| CAGTGATTGAAAAGGTCATG+TGG | + | chr1.3:41884965-41884984 | None:intergenic | 40.0% | |
| CATCCATAAACAAAAAGGGG+AGG | + | chr1.3:41884380-41884399 | None:intergenic | 40.0% | |
| CGAATGAATCGCTCATACTT+TGG | + | chr1.3:41884719-41884738 | None:intergenic | 40.0% | |
| GGAAAAGGGTTAAACCTTCT+GGG | + | chr1.3:41883347-41883366 | None:intergenic | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr1.3:41884815-41884834 | MS.gene41047:CDS | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr1.3:41884865-41884884 | MS.gene41047:CDS | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr1.3:41884870-41884889 | None:intergenic | 40.0% | |
| TCACGATCCAAAAGATAAGC+AGG | + | chr1.3:41883821-41883840 | None:intergenic | 40.0% | |
| TCCATAAACAAAAAGGGGAG+GGG | + | chr1.3:41884378-41884397 | None:intergenic | 40.0% | |
| TGAAAACACAACCAGAGCAA+AGG | - | chr1.3:41883838-41883857 | MS.gene41047:CDS | 40.0% | |
| TGAATGTGCAATCTCACCTT+AGG | + | chr1.3:41884021-41884040 | None:intergenic | 40.0% | |
| TGCATGAAGAGTCAACATCT+AGG | - | chr1.3:41883759-41883778 | MS.gene41047:intron | 40.0% | |
| TTAGTGAAACGCAATCCAGT+GGG | + | chr1.3:41884743-41884762 | None:intergenic | 40.0% | |
| TTGATTCTCTTGCACACTCT+AGG | - | chr1.3:41883904-41883923 | MS.gene41047:CDS | 40.0% | |
| TTTAGTGAAACGCAATCCAG+TGG | + | chr1.3:41884744-41884763 | None:intergenic | 40.0% | |
| ! | ACCATCATTTTCTGGGTTGT+TGG | + | chr1.3:41885531-41885550 | None:intergenic | 40.0% |
| ! | AGCTGTTCCTGCTTATCTTT+TGG | - | chr1.3:41883811-41883830 | MS.gene41047:CDS | 40.0% |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr1.3:41883784-41883803 | MS.gene41047:intron | 40.0% |
| ! | CCTTTTCATCTGTGCCTTTT+CGG | + | chr1.3:41883515-41883534 | None:intergenic | 40.0% |
| ! | GATGCTGAAATTTTTGTGGG+CGG | - | chr1.3:41884438-41884457 | MS.gene41047:intron | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+AGG | - | chr1.3:41883788-41883807 | MS.gene41047:CDS | 40.0% |
| ! | GGTTCACAACCACTCTAAAA+AGG | - | chr1.3:41883321-41883340 | MS.gene41047:intron | 40.0% |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr1.3:41884216-41884235 | None:intergenic | 40.0% |
| !! | CTATTGGTCTTAAGGGAAAG+AGG | - | chr1.3:41883470-41883489 | MS.gene41047:intron | 40.0% |
| !! | CTCATACTTTGGTGGTTTTC+TGG | + | chr1.3:41884708-41884727 | None:intergenic | 40.0% |
| ACAATGTTCATACGCTCTCC+AGG | - | chr1.3:41885105-41885124 | MS.gene41047:intron | 45.0% | |
| AGCAGGGAAAGACATGAAAC+GGG | - | chr1.3:41884100-41884119 | MS.gene41047:intron | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr1.3:41884002-41884021 | MS.gene41047:intron | 45.0% | |
| CAAAAAAGGAAGGAGAAGGC+TGG | - | chr1.3:41883976-41883995 | MS.gene41047:CDS | 45.0% | |
| CGGTCTATATGATCTCCTTG+AGG | + | chr1.3:41883235-41883254 | None:intergenic | 45.0% | |
| GAATGCAGGTAAATATGCCC+AGG | - | chr1.3:41885502-41885521 | MS.gene41047:intron | 45.0% | |
| GCTCTTGTCTGTCAACAGTT+TGG | - | chr1.3:41883733-41883752 | MS.gene41047:intron | 45.0% | |
| GGAGGGGACAAAGAATGATA+AGG | + | chr1.3:41884362-41884381 | None:intergenic | 45.0% | |
| TGCAATCTCACCTTAGGTAG+AGG | + | chr1.3:41884015-41884034 | None:intergenic | 45.0% | |
| ! | AAAGCAACATTTGTTGGGCC+TGG | - | chr1.3:41884677-41884696 | MS.gene41047:CDS | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+GGG | + | chr1.3:41884842-41884861 | None:intergenic | 45.0% |
| ! | CCGAAAAGGCACAGATGAAA+AGG | - | chr1.3:41883512-41883531 | MS.gene41047:intron | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr1.3:41884850-41884869 | MS.gene41047:CDS | 45.0% |
| !! | GGTGGTTTTCTGGTAAAACC+AGG | + | chr1.3:41884698-41884717 | None:intergenic | 45.0% |
| !! | TCCCCTCCCCTTTTTGTTTA+TGG | - | chr1.3:41884374-41884393 | MS.gene41047:intron | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr1.3:41884851-41884870 | MS.gene41047:CDS | 45.0% |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr1.3:41885522-41885541 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr1.3:41885523-41885542 | None:intergenic | 45.0% |
| ACCTGCAGGGAAAGTTGTGT+GGG | - | chr1.3:41885398-41885417 | MS.gene41047:CDS | 50.0% | |
| AGAGTCAACATCTAGGCGCA+AGG | - | chr1.3:41883766-41883785 | MS.gene41047:intron | 50.0% | |
| AGGTGTACATGGGGCCATTA+GGG | + | chr1.3:41884832-41884851 | None:intergenic | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr1.3:41884199-41884218 | MS.gene41047:intron | 50.0% | |
| ATTTCCTCAGGTACGTCCTG+TGG | - | chr1.3:41884165-41884184 | MS.gene41047:intron | 50.0% | |
| CAGGTGAATGTCAGCGAACT+TGG | - | chr1.3:41885366-41885385 | MS.gene41047:CDS | 50.0% | |
| CGACTGACATACCTTTGCTC+TGG | + | chr1.3:41883852-41883871 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGGAAAT+GGG | - | chr1.3:41883984-41884003 | MS.gene41047:CDS | 50.0% | |
| GAATGTCAGCGAACTTGGAC+TGG | - | chr1.3:41885371-41885390 | MS.gene41047:CDS | 50.0% | |
| GCAGGGAAAGACATGAAACG+GGG | - | chr1.3:41884101-41884120 | MS.gene41047:intron | 50.0% | |
| TGCGGGTTTCGTGATCGAAA+CGG | + | chr1.3:41883279-41883298 | None:intergenic | 50.0% | |
| ! | CACCAAGAGAGGTGTACATG+GGG | + | chr1.3:41884841-41884860 | None:intergenic | 50.0% |
| ! | CCACTCTAAAAAGGCCCAGA+AGG | - | chr1.3:41883330-41883349 | MS.gene41047:intron | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr1.3:41884852-41884871 | None:intergenic | 50.0% |
| ! | GACACCAAGAGAGGTGTACA+TGG | + | chr1.3:41884843-41884862 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr1.3:41884849-41884868 | MS.gene41047:CDS | 50.0% |
| !! | CCTTCTGGGCCTTTTTAGAG+TGG | + | chr1.3:41883333-41883352 | None:intergenic | 50.0% |
| !! | TCAGTCGTGCCATGCTGTTT+TGG | - | chr1.3:41883865-41883884 | MS.gene41047:CDS | 50.0% |
| !! | TTGGACTGGTTACACCTGCA+GGG | - | chr1.3:41885385-41885404 | MS.gene41047:CDS | 50.0% |
| CACCTGCAGGGAAAGTTGTG+TGG | - | chr1.3:41885397-41885416 | MS.gene41047:CDS | 55.0% | |
| CCTGCAGGGAAAGTTGTGTG+GGG | - | chr1.3:41885399-41885418 | MS.gene41047:CDS | 55.0% | |
| GAGCGATTCATTCGTCCCAC+TGG | - | chr1.3:41884725-41884744 | MS.gene41047:intron | 55.0% | |
| GAGGTGTACATGGGGCCATT+AGG | + | chr1.3:41884833-41884852 | None:intergenic | 55.0% | |
| GGAAGGAGAAGGCTGGGAAA+TGG | - | chr1.3:41883983-41884002 | MS.gene41047:CDS | 55.0% | |
| GGGTTTCGTGATCGAAACGG+CGG | + | chr1.3:41883276-41883295 | None:intergenic | 55.0% | |
| !! | CTTGGACTGGTTACACCTGC+AGG | - | chr1.3:41885384-41885403 | MS.gene41047:CDS | 55.0% |
| AACCCGCAAGCGCAAGAGAG+AGG | - | chr1.3:41883291-41883310 | MS.gene41047:intron | 60.0% | |
| AGCCTCTCTCTTGCGCTTGC+GGG | + | chr1.3:41883296-41883315 | None:intergenic | 60.0% | |
| CCCCACACAACTTTCCCTGC+AGG | + | chr1.3:41885402-41885421 | None:intergenic | 60.0% | |
| GAGCCTCTCTCTTGCGCTTG+CGG | + | chr1.3:41883297-41883316 | None:intergenic | 60.0% | |
| GGCCCCATGTACACCTCTCT+TGG | - | chr1.3:41884836-41884855 | MS.gene41047:CDS | 60.0% | |
| TCAGCCACAGGACGTACCTG+AGG | + | chr1.3:41884172-41884191 | None:intergenic | 60.0% | |
| GCGCAAGAGAGAGGCTCGTG+AGG | - | chr1.3:41883300-41883319 | MS.gene41047:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 41883094 | 41885577 | 41883094 | ID=MS.gene41047 |
| chr1.3 | mRNA | 41883094 | 41885577 | 41883094 | ID=MS.gene41047.t1;Parent=MS.gene41047 |
| chr1.3 | exon | 41885575 | 41885577 | 41885575 | ID=MS.gene41047.t1.exon1;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41885575 | 41885577 | 41885575 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41885320 | 41885439 | 41885320 | ID=MS.gene41047.t1.exon2;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41885320 | 41885439 | 41885320 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41885135 | 41885202 | 41885135 | ID=MS.gene41047.t1.exon3;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41885135 | 41885202 | 41885135 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41884812 | 41884920 | 41884812 | ID=MS.gene41047.t1.exon4;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41884812 | 41884920 | 41884812 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41884648 | 41884716 | 41884648 | ID=MS.gene41047.t1.exon5;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41884648 | 41884716 | 41884648 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41884439 | 41884496 | 41884439 | ID=MS.gene41047.t1.exon6;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41884439 | 41884496 | 41884439 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41883785 | 41884020 | 41883785 | ID=MS.gene41047.t1.exon7;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41883785 | 41884020 | 41883785 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41883251 | 41883302 | 41883251 | ID=MS.gene41047.t1.exon8;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41883251 | 41883302 | 41883251 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| chr1.3 | exon | 41883094 | 41883161 | 41883094 | ID=MS.gene41047.t1.exon9;Parent=MS.gene41047.t1 |
| chr1.3 | CDS | 41883094 | 41883161 | 41883094 | ID=cds.MS.gene41047.t1;Parent=MS.gene41047.t1 |
| Gene Sequence |
| Protein sequence |
