AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41351

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41351.t1 MTR_1g047740 94.352 301 17 0 1 301 1 301 0.0 595
MS.gene41351.t1 MTR_3g108240 73.786 309 73 2 1 301 1 309 1.02e-170 475
MS.gene41351.t1 MTR_3g108240 73.139 309 73 3 1 301 1 307 8.26e-167 465
MS.gene41351.t1 MTR_7g102990 70.238 252 75 0 50 301 18 269 1.96e-140 398
MS.gene41351.t1 MTR_1g010150 83.415 205 34 0 97 301 1 205 2.23e-131 372
MS.gene41351.t1 MTR_4g057310 65.152 264 87 1 37 300 4 262 3.21e-130 371
MS.gene41351.t1 MTR_2g020040 58.000 250 104 1 48 297 10 258 2.45e-106 310
MS.gene41351.t1 MTR_4g057310 63.801 221 73 2 29 249 1 214 2.09e-103 301
MS.gene41351.t1 MTR_7g102990 69.492 177 54 0 50 226 18 194 9.99e-94 276
MS.gene41351.t1 MTR_8g104410 37.545 277 151 7 33 300 736 999 1.61e-57 199
MS.gene41351.t1 MTR_8g104410 37.545 277 151 7 33 300 972 1235 2.90e-57 199
MS.gene41351.t1 MTR_6g083900 38.710 279 148 7 30 297 956 1222 2.17e-54 191
MS.gene41351.t1 MTR_4g107440 36.823 277 150 8 26 297 1013 1269 1.86e-50 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41351.t1 AT5G25560 66.552 290 90 2 14 301 24 308 5.75e-145 410
MS.gene41351.t1 AT5G25560 66.552 290 90 2 14 301 24 308 5.75e-145 410
MS.gene41351.t1 AT5G25560 66.552 290 90 2 14 301 24 308 5.75e-145 410
MS.gene41351.t1 AT5G25560 66.552 290 90 2 14 301 24 308 5.75e-145 410
MS.gene41351.t1 AT5G25560 64.333 300 90 3 14 301 24 318 4.56e-142 403
MS.gene41351.t1 AT5G25560 65.172 290 89 3 14 301 24 303 1.98e-139 396
MS.gene41351.t1 AT5G22920 66.797 256 85 0 45 300 16 271 3.69e-134 382
MS.gene41351.t1 AT5G22920 66.667 222 74 0 45 266 16 237 1.07e-114 331
MS.gene41351.t1 AT5G18650 56.693 254 109 1 44 297 6 258 2.74e-105 308
MS.gene41351.t1 AT3G62970 52.416 269 125 3 30 298 10 275 1.14e-101 299
MS.gene41351.t1 AT3G62970 53.219 233 107 2 30 262 10 240 5.57e-91 271
MS.gene41351.t1 AT3G62970 52.915 223 103 2 30 252 10 230 6.92e-86 257
MS.gene41351.t1 AT1G74770 38.851 296 155 8 7 297 983 1257 5.79e-60 206
MS.gene41351.t1 AT3G18290 38.732 284 148 8 30 301 974 1243 1.75e-57 199
MS.gene41351.t1 AT1G18910 40.727 275 139 8 27 297 998 1252 6.85e-57 197
MS.gene41351.t1 AT1G74770 37.917 240 123 8 7 241 983 1201 4.41e-43 158

Find 62 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAAAGGATACATGGAATA+TGG 0.235762 1.2:-30767556 MS.gene41351:CDS
ACACCACAGTTAATACAATT+TGG 0.247115 1.2:+30766420 None:intergenic
TCTCGTCTGTCGTGTGTTAT+AGG 0.247468 1.2:+30764505 None:intergenic
AAGGATTCCAGATTTGATTT+TGG 0.266935 1.2:+30767625 None:intergenic
TTGGAGGATTAACGTCTTCT+TGG 0.305325 1.2:+30767644 None:intergenic
CTGTGATATGTCAAGGGTTT+GGG 0.325412 1.2:-30765033 MS.gene41351:CDS
ACCGGAGAAGATGCCGAATC+AGG 0.341031 1.2:-30767438 MS.gene41351:CDS
ACAAATGATTTGCAAGATAA+AGG 0.341490 1.2:-30767571 MS.gene41351:CDS
TGAGCAATACCAAAATAAAA+TGG 0.342214 1.2:-30764973 MS.gene41351:intron
TATTAACTGTGGTGTTTGTA+TGG 0.349579 1.2:-30766412 MS.gene41351:CDS
CACCTGTTTGACTTGGTGTC+GGG 0.359703 1.2:+30767151 None:intergenic
GTCAAGGGTTTGGGAGAGAT+TGG 0.368404 1.2:-30765024 MS.gene41351:CDS
TAATCCTCCAAAATCAAATC+TGG 0.375712 1.2:-30767632 MS.gene41351:CDS
TGGAGGATTAACGTCTTCTT+GGG 0.398592 1.2:+30767645 None:intergenic
TCTGTGATATGTCAAGGGTT+TGG 0.400427 1.2:-30765034 MS.gene41351:CDS
TTGTTGCTTCTCAACTCTGC+TGG 0.435891 1.2:-30765619 MS.gene41351:CDS
TGATTGCCCCGTGTGTTTCG+AGG 0.440556 1.2:-30765559 MS.gene41351:intron
TCAAATCTGGAATCCTTGCC+TGG 0.447006 1.2:-30767619 MS.gene41351:CDS
GATTCACTTGATGCTTCTCC+AGG 0.447764 1.2:+30767601 None:intergenic
CCCTGATTCGGCATCTTCTC+CGG 0.448395 1.2:+30767437 None:intergenic
GCCCCGACACCAAGTCAAAC+AGG 0.459750 1.2:-30767153 MS.gene41351:intron
TGCAACAAGGAGCCCTGATT+CGG 0.470133 1.2:+30767425 None:intergenic
ATAAAGGATACATGGAATAT+GGG 0.477054 1.2:-30767555 MS.gene41351:intron
GTAATGGCTGTGGAATTTGC+AGG 0.495528 1.2:-30766168 MS.gene41351:intron
CAGAACGACTTCGAACATAG+AGG 0.501864 1.2:+30765053 None:intergenic
TTTGCAGATGCCAACACTAC+CGG 0.517868 1.2:-30767456 MS.gene41351:intron
ACTTGATGCTTCTCCAGGCA+AGG 0.518546 1.2:+30767606 None:intergenic
GGCATCTTCTCCGGTAGTGT+TGG 0.528892 1.2:+30767446 None:intergenic
CCGGAGAAGATGCCGAATCA+GGG 0.533742 1.2:-30767437 MS.gene41351:CDS
AAGCAGCAGTACCATTGTAA+TGG 0.540337 1.2:-30766184 MS.gene41351:CDS
CAGTACCATTGTAATGGCTG+TGG 0.543474 1.2:-30766178 MS.gene41351:CDS
TGCAATGACTGCGGAAACAC+CGG 0.544929 1.2:-30764575 MS.gene41351:CDS
ACCTGTTTGACTTGGTGTCG+GGG 0.548265 1.2:+30767152 None:intergenic
ATTAACTGTGGTGTTTGTAT+GGG 0.551930 1.2:-30766411 MS.gene41351:CDS
AAAATGGAAACGAACATGAC+CGG 0.552941 1.2:+30764556 None:intergenic
AACAGTCACACCTGTGTGGA+AGG 0.553647 1.2:-30765594 MS.gene41351:CDS
ACACCTGTTTGACTTGGTGT+CGG 0.555973 1.2:+30767150 None:intergenic
AGTCGTTCTGTGATATGTCA+AGG 0.560608 1.2:-30765040 MS.gene41351:CDS
TATTCTTTGCACAGAACTGG+TGG 0.573756 1.2:-30765781 MS.gene41351:intron
TGTTTCCGCAGTCATTGCAC+AGG 0.575987 1.2:+30764579 None:intergenic
TTTGCAAGATAAAGGATACA+TGG 0.576830 1.2:-30767563 MS.gene41351:CDS
ACTTTGTGCAACTGAACAAG+AGG 0.578809 1.2:-30766996 MS.gene41351:intron
TGTTATAGGAGTTGCAGTTG+AGG 0.581082 1.2:+30764519 None:intergenic
TTCTTCCATTGTAACAAGTG+TGG 0.583354 1.2:-30765748 MS.gene41351:intron
AAATGTTACCTCGAAACACA+CGG 0.583489 1.2:+30765551 None:intergenic
AATGTTACCTCGAAACACAC+GGG 0.588310 1.2:+30765552 None:intergenic
GTCGTTCTGTGATATGTCAA+GGG 0.590443 1.2:-30765039 MS.gene41351:CDS
GCTTACCACACTTGTTACAA+TGG 0.603038 1.2:+30765743 None:intergenic
ATGAAATGAGAGAACATCAC+CGG 0.612682 1.2:-30765171 MS.gene41351:intron
TTATGGATTGTATGTCCGCA+CGG 0.613243 1.2:+30765205 None:intergenic
AGCTTGTATCATGGATGATG+TGG 0.625002 1.2:-30767707 None:intergenic
TTGCCGCCATTGTCACAATG+AGG 0.627282 1.2:-30767389 MS.gene41351:CDS
TTGCCTCATTGTGACAATGG+CGG 0.629473 1.2:+30767386 None:intergenic
AGAACGACTTCGAACATAGA+GGG 0.631596 1.2:+30765054 None:intergenic
CAGCCAAATTGTATTAACTG+TGG 0.635426 1.2:-30766423 MS.gene41351:CDS
ATGCATTGCTCCTTCCACAC+AGG 0.659665 1.2:+30765584 None:intergenic
GAAATTGTTGTTATGCCGTG+CGG 0.662393 1.2:-30765220 MS.gene41351:CDS
TATAACACACGACAGACGAG+AGG 0.688676 1.2:-30764503 MS.gene41351:CDS
ATGTTACCTCGAAACACACG+GGG 0.693054 1.2:+30765553 None:intergenic
AAATTCCACAGCCATTACAA+TGG 0.701862 1.2:+30766173 None:intergenic
TGGATCCTGTGCAATGACTG+CGG 0.725144 1.2:-30764584 MS.gene41351:CDS
GGAAAACAGTCACACCTGTG+TGG 0.726921 1.2:-30765598 MS.gene41351:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAGTATATAATCAT+AGG + chr1.2:30765364-30765383 None:intergenic 10.0%
!! AAATTATTCTATTAGAATTA+AGG + chr1.2:30765153-30765172 None:intergenic 10.0%
!!! ATAAAGACTAATTTTATAAA+AGG + chr1.2:30764721-30764740 None:intergenic 10.0%
!!! TGTGATATTTTTAAATTTTT+GGG - chr1.2:30764950-30764969 MS.gene41351:intron 10.0%
!!! TTGTGATATTTTTAAATTTT+TGG - chr1.2:30764949-30764968 MS.gene41351:intron 10.0%
!! AGTATAAATAATAAACAGTA+AGG + chr1.2:30767265-30767284 None:intergenic 15.0%
!! ATAGTTATGAATATAATTCA+CGG - chr1.2:30766748-30766767 MS.gene41351:intron 15.0%
!! ATTATATTCATAACTATTAC+AGG + chr1.2:30766745-30766764 None:intergenic 15.0%
!! TACTGATATTGAATTTATAA+AGG - chr1.2:30765269-30765288 MS.gene41351:intron 15.0%
!!! GCAAATGATAAATATTTTAT+GGG + chr1.2:30766207-30766226 None:intergenic 15.0%
!!! GTGATATTTTTAAATTTTTG+GGG - chr1.2:30764951-30764970 MS.gene41351:intron 15.0%
!!! TGCAAATGATAAATATTTTA+TGG + chr1.2:30766208-30766227 None:intergenic 15.0%
!! AAAAACAAAATGAAACAAAG+GGG + chr1.2:30766130-30766149 None:intergenic 20.0%
!! AAAAAGAACAATATTCAGAA+AGG + chr1.2:30767091-30767110 None:intergenic 20.0%
!! AAAAGAACAATATTCAGAAA+GGG + chr1.2:30767090-30767109 None:intergenic 20.0%
!! AAATTACGCTTATGAAAAAT+AGG + chr1.2:30764854-30764873 None:intergenic 20.0%
!! AACAAATTGCATCATTATTA+GGG - chr1.2:30766079-30766098 MS.gene41351:intron 20.0%
!! ATATCAAAATCAATCAGTTA+AGG + chr1.2:30766398-30766417 None:intergenic 20.0%
!! ATTTGTGGATATTTCAATTA+AGG + chr1.2:30765092-30765111 None:intergenic 20.0%
!! CATGCATAAAGAAAATAAAA+TGG - chr1.2:30765512-30765531 MS.gene41351:intron 20.0%
!! GAAAAACAAAATGAAACAAA+GGG + chr1.2:30766131-30766150 None:intergenic 20.0%
!! TAAAAAATAAGTAATGAGAC+TGG + chr1.2:30764893-30764912 None:intergenic 20.0%
!! TAACAAATTGCATCATTATT+AGG - chr1.2:30766078-30766097 MS.gene41351:intron 20.0%
!! TATTGACATCTTAAATTCAA+GGG - chr1.2:30767562-30767581 MS.gene41351:CDS 20.0%
!! TGAAAAACAAAATGAAACAA+AGG + chr1.2:30766132-30766151 None:intergenic 20.0%
!! TGATATTGAATTTATAAAGG+AGG - chr1.2:30765272-30765291 MS.gene41351:intron 20.0%
!! TTATTGACATCTTAAATTCA+AGG - chr1.2:30767561-30767580 MS.gene41351:CDS 20.0%
!!! ATGCTAGAGTTATTTTAAAT+TGG - chr1.2:30766858-30766877 MS.gene41351:intron 20.0%
!!! CTGATACAATAATTTTTTAC+TGG + chr1.2:30766801-30766820 None:intergenic 20.0%
!!! TGATAAATATTTTATGGGAT+CGG + chr1.2:30766202-30766221 None:intergenic 20.0%
! AAAACAAAATGAAACAAAGG+GGG + chr1.2:30766129-30766148 None:intergenic 25.0%
! AGATATCTGCATCATATAAA+AGG + chr1.2:30765992-30766011 None:intergenic 25.0%
! ATAAAGGATACATGGAATAT+GGG - chr1.2:30764641-30764660 MS.gene41351:intron 25.0%
! ATCACAACAACAAAATAACT+AGG + chr1.2:30765248-30765267 None:intergenic 25.0%
! ATTGACATCTTAAATTCAAG+GGG - chr1.2:30767563-30767582 MS.gene41351:CDS 25.0%
! CAAAATAGCAAGTACAAATA+TGG + chr1.2:30766305-30766324 None:intergenic 25.0%
! CAAATAAATCCCTAAAAACA+GGG + chr1.2:30766263-30766282 None:intergenic 25.0%
! CTTACATGTATATAATCACA+GGG + chr1.2:30765490-30765509 None:intergenic 25.0%
! TAATAAACAGTAAGGAAAAG+AGG + chr1.2:30767257-30767276 None:intergenic 25.0%
! TATGAAATGATAATCTGGTT+AGG - chr1.2:30766051-30766070 MS.gene41351:intron 25.0%
! TATGCAACATTAGAACAAAA+AGG + chr1.2:30765878-30765897 None:intergenic 25.0%
! TCATTGAGAAAAACAAAGAT+TGG + chr1.2:30765667-30765686 None:intergenic 25.0%
! TGAGCAATACCAAAATAAAA+TGG - chr1.2:30767223-30767242 MS.gene41351:intron 25.0%
!! ACAAATGATTTGCAAGATAA+AGG - chr1.2:30764625-30764644 MS.gene41351:intron 25.0%
!! ACTAATTTTATAAAAGGAGC+AGG + chr1.2:30764715-30764734 None:intergenic 25.0%
!! GGTAACATTTACAATTTTCA+TGG - chr1.2:30766658-30766677 MS.gene41351:intron 25.0%
!! TAATTTTGTGCACTTTATTC+AGG - chr1.2:30765167-30765186 MS.gene41351:intron 25.0%
!! TTTCATCTATACAGCTTTTA+TGG + chr1.2:30767011-30767030 None:intergenic 25.0%
!!! AAGTCTGCTTTTTATATTTC+TGG - chr1.2:30766896-30766915 MS.gene41351:intron 25.0%
!!! ATTTTATTTTGGTATTGCTC+AGG + chr1.2:30767224-30767243 None:intergenic 25.0%
!!! GGTATTTATTTTTGTTCTGT+TGG - chr1.2:30767377-30767396 MS.gene41351:intron 25.0%
!!! TCTGTTGGTTCATTAATTTT+TGG - chr1.2:30767392-30767411 MS.gene41351:CDS 25.0%
AAAATCAATCAGTTAAGGCA+AGG + chr1.2:30766393-30766412 None:intergenic 30.0%
AATTGCATCATTATTAGGGA+TGG - chr1.2:30766083-30766102 MS.gene41351:intron 30.0%
ACACCACAGTTAATACAATT+TGG + chr1.2:30765779-30765798 None:intergenic 30.0%
ACGCTTATGAAAAATAGGTA+AGG + chr1.2:30764849-30764868 None:intergenic 30.0%
ATAAAAACACCTGTTTGACT+TGG + chr1.2:30765055-30765074 None:intergenic 30.0%
ATGATGTGAGTATTAATCCT+AGG - chr1.2:30765843-30765862 MS.gene41351:intron 30.0%
ATTAACTGTGGTGTTTGTAT+GGG - chr1.2:30765785-30765804 MS.gene41351:intron 30.0%
CCAAATAAATCCCTAAAAAC+AGG + chr1.2:30766264-30766283 None:intergenic 30.0%
CGTTTGACATTCATGATTAT+AGG - chr1.2:30766554-30766573 MS.gene41351:intron 30.0%
CTATACTTGATATGAATGAC+AGG + chr1.2:30767427-30767446 None:intergenic 30.0%
CTGCATCATATAAAAGGAAA+CGG + chr1.2:30765986-30766005 None:intergenic 30.0%
CTTGTATTTGATTGTATACC+AGG - chr1.2:30767111-30767130 MS.gene41351:intron 30.0%
GATAAAGGATACATGGAATA+TGG - chr1.2:30764640-30764659 MS.gene41351:intron 30.0%
GCTTACATGTATATAATCAC+AGG + chr1.2:30765491-30765510 None:intergenic 30.0%
TAATCCTCCAAAATCAAATC+TGG - chr1.2:30764564-30764583 MS.gene41351:CDS 30.0%
TATTAACTGTGGTGTTTGTA+TGG - chr1.2:30765784-30765803 MS.gene41351:intron 30.0%
TCAAAAATCTCATTGCAACA+AGG + chr1.2:30764787-30764806 None:intergenic 30.0%
TTTGCAAGATAAAGGATACA+TGG - chr1.2:30764633-30764652 MS.gene41351:intron 30.0%
! AAATATTTTATGGGATCGGA+GGG + chr1.2:30766198-30766217 None:intergenic 30.0%
! TAAATATTTTATGGGATCGG+AGG + chr1.2:30766199-30766218 None:intergenic 30.0%
! TTCATGTCTTATTGTTGCTT+TGG - chr1.2:30767463-30767482 MS.gene41351:intron 30.0%
!! AACAGGTGTTTTTATCAACT+TGG - chr1.2:30765060-30765079 MS.gene41351:CDS 30.0%
!! AAGGATTCCAGATTTGATTT+TGG + chr1.2:30764574-30764593 None:intergenic 30.0%
!! ACAGGTGTTTTTATCAACTT+GGG - chr1.2:30765061-30765080 MS.gene41351:CDS 30.0%
!! GAGAACTGACCATTTTATTT+TGG + chr1.2:30767235-30767254 None:intergenic 30.0%
!! TGATGCTTTTTACTACTTTC+AGG - chr1.2:30765748-30765767 MS.gene41351:intron 30.0%
!!! CCTGTTTTTAGGGATTTATT+TGG - chr1.2:30766261-30766280 MS.gene41351:intron 30.0%
!!! GATGGTAACATGTTTTAATG+CGG - chr1.2:30766101-30766120 MS.gene41351:intron 30.0%
!!! TCAACTTTACCCTGTTTTTA+GGG - chr1.2:30766251-30766270 MS.gene41351:intron 30.0%
!!! TCTGCTTTTTATATTTCTGG+AGG - chr1.2:30766899-30766918 MS.gene41351:intron 30.0%
AAAATGGAAACGAACATGAC+CGG + chr1.2:30767643-30767662 None:intergenic 35.0%
AAATGTTACCTCGAAACACA+CGG + chr1.2:30766648-30766667 None:intergenic 35.0%
AAATTCCACAGCCATTACAA+TGG + chr1.2:30766026-30766045 None:intergenic 35.0%
ACTTGATATGAATGACAGGT+AGG + chr1.2:30767423-30767442 None:intergenic 35.0%
ATGAAATGAGAGAACATCAC+CGG - chr1.2:30767025-30767044 MS.gene41351:intron 35.0%
CAAAAAGGAATCTCATTCCT+AGG + chr1.2:30765863-30765882 None:intergenic 35.0%
CAGCCAAATTGTATTAACTG+TGG - chr1.2:30765773-30765792 MS.gene41351:intron 35.0%
CATTGAGAGTCAGTTATTTG+TGG - chr1.2:30767532-30767551 MS.gene41351:intron 35.0%
CGATATGCACATGTATGTAT+TGG - chr1.2:30767336-30767355 MS.gene41351:intron 35.0%
CTGTTAAGCTTATTACTGTC+TGG - chr1.2:30765540-30765559 MS.gene41351:intron 35.0%
CTTGTTCATATGCTTCTTTC+TGG - chr1.2:30764670-30764689 MS.gene41351:intron 35.0%
GAACAATATTCAGAAAGGGA+TGG + chr1.2:30767086-30767105 None:intergenic 35.0%
GAATATAATACATGCCCACT+AGG - chr1.2:30765425-30765444 MS.gene41351:intron 35.0%
GCAGGTATGAAATGATAATC+TGG - chr1.2:30766046-30766065 MS.gene41351:intron 35.0%
GTCCATGAAATAACAGGAAA+AGG + chr1.2:30765122-30765141 None:intergenic 35.0%
TACCTTGTCCATGAAATAAC+AGG + chr1.2:30765128-30765147 None:intergenic 35.0%
TCAATGCATATTGAAGGAGA+AGG + chr1.2:30767518-30767537 None:intergenic 35.0%
TCATGGTTTAGAAACAGCTT+AGG - chr1.2:30766675-30766694 MS.gene41351:intron 35.0%
TGACTCTCAATGCATATTGA+AGG + chr1.2:30767524-30767543 None:intergenic 35.0%
TGATATTCTTTGCACAGAAC+TGG - chr1.2:30766412-30766431 MS.gene41351:CDS 35.0%
TGGATAGAACACTAAGAACT+AGG - chr1.2:30767356-30767375 MS.gene41351:intron 35.0%
TTAAGCTTATTACTGTCTGG+AGG - chr1.2:30765543-30765562 MS.gene41351:intron 35.0%
TTCTTCCATTGTAACAAGTG+TGG - chr1.2:30766448-30766467 MS.gene41351:intron 35.0%
! GGAAAAGGTGCAAAAATTTG+TGG + chr1.2:30765107-30765126 None:intergenic 35.0%
! TCATGTTCGTTTCCATTTTG+TGG - chr1.2:30767644-30767663 MS.gene41351:CDS 35.0%
!! ATGTCTTATTGTTGCTTTGG+AGG - chr1.2:30767466-30767485 MS.gene41351:intron 35.0%
!! CAGGTGTTTTTATCAACTTG+GGG - chr1.2:30765062-30765081 MS.gene41351:CDS 35.0%
!! CTCAACTTTACCCTGTTTTT+AGG - chr1.2:30766250-30766269 MS.gene41351:intron 35.0%
!! GATTCCAGATTTGATTTTGG+AGG + chr1.2:30764571-30764590 None:intergenic 35.0%
!! TTCCTGTTATTTCATGGACA+AGG - chr1.2:30765123-30765142 MS.gene41351:intron 35.0%
!!! CACCTTTTCCTGTTATTTCA+TGG - chr1.2:30765117-30765136 MS.gene41351:intron 35.0%
AAACAGTTTCAGCCAGCATA+TGG + chr1.2:30765637-30765656 None:intergenic 40.0%
AAGCAGCAGTACCATTGTAA+TGG - chr1.2:30766012-30766031 MS.gene41351:intron 40.0%
AATGTTACCTCGAAACACAC+GGG + chr1.2:30766647-30766666 None:intergenic 40.0%
ACAGGGTAAAGTTGAGTACT+AGG + chr1.2:30766246-30766265 None:intergenic 40.0%
ACTTTGTGCAACTGAACAAG+AGG - chr1.2:30765200-30765219 MS.gene41351:CDS 40.0%
AGAACGACTTCGAACATAGA+GGG + chr1.2:30767145-30767164 None:intergenic 40.0%
AGTCGTTCTGTGATATGTCA+AGG - chr1.2:30767156-30767175 MS.gene41351:CDS 40.0%
ATAATACATGCCCACTAGGT+TGG - chr1.2:30765429-30765448 MS.gene41351:intron 40.0%
ATCAGTTAAGGCAAGGCAAA+AGG + chr1.2:30766386-30766405 None:intergenic 40.0%
CTGTGATATGTCAAGGGTTT+GGG - chr1.2:30767163-30767182 MS.gene41351:CDS 40.0%
GATGGAGAAGTAAAGAGACT+AGG + chr1.2:30767068-30767087 None:intergenic 40.0%
GCAAGGAATTAGAGTCTACA+AGG + chr1.2:30765459-30765478 None:intergenic 40.0%
GTCGTTCTGTGATATGTCAA+GGG - chr1.2:30767157-30767176 MS.gene41351:CDS 40.0%
TACACTAGTTATAGACTCGC+TGG + chr1.2:30765959-30765978 None:intergenic 40.0%
TATTCTTTGCACAGAACTGG+TGG - chr1.2:30766415-30766434 MS.gene41351:CDS 40.0%
TCTGTGATATGTCAAGGGTT+TGG - chr1.2:30767162-30767181 MS.gene41351:CDS 40.0%
TGGAGGATTAACGTCTTCTT+GGG + chr1.2:30764554-30764573 None:intergenic 40.0%
TGTTATAGGAGTTGCAGTTG+AGG + chr1.2:30767680-30767699 None:intergenic 40.0%
TTGGAGGATTAACGTCTTCT+TGG + chr1.2:30764555-30764574 None:intergenic 40.0%
! ATTCCAGATGTTTTGCGCTA+TGG - chr1.2:30765568-30765587 MS.gene41351:CDS 40.0%
! CTTTTGCCTCATTGTGACAA+TGG + chr1.2:30764816-30764835 None:intergenic 40.0%
! GAAATTGTTGTTATGCCGTG+CGG - chr1.2:30766976-30766995 MS.gene41351:intron 40.0%
! GCTTACCACACTTGTTACAA+TGG + chr1.2:30766456-30766475 None:intergenic 40.0%
! TTATGGATTGTATGTCCGCA+CGG + chr1.2:30766994-30767013 None:intergenic 40.0%
! TTTTGGTATTGCTCAGGCAT+TGG + chr1.2:30767218-30767237 None:intergenic 40.0%
!! ATATAATCACAGGGAGCACT+AGG + chr1.2:30765481-30765500 None:intergenic 40.0%
!!! GGCATTTTAGAGCCACAAAA+TGG + chr1.2:30767659-30767678 None:intergenic 40.0%
ACAGGATCCAAACCTGTTAC+GGG + chr1.2:30767602-30767621 None:intergenic 45.0%
ATGTTACCTCGAAACACACG+GGG + chr1.2:30766646-30766665 None:intergenic 45.0%
CACAGGATCCAAACCTGTTA+CGG + chr1.2:30767603-30767622 None:intergenic 45.0%
CAGAACGACTTCGAACATAG+AGG + chr1.2:30767146-30767165 None:intergenic 45.0%
CAGTACCATTGTAATGGCTG+TGG - chr1.2:30766018-30766037 MS.gene41351:intron 45.0%
CATAGCACAAGACCATATGC+TGG - chr1.2:30765622-30765641 MS.gene41351:CDS 45.0%
CTACCATAGCGCAAAACATC+TGG + chr1.2:30765574-30765593 None:intergenic 45.0%
CTGATTGTGTTACCCGTAAC+AGG - chr1.2:30767587-30767606 MS.gene41351:CDS 45.0%
GATTCACTTGATGCTTCTCC+AGG + chr1.2:30764598-30764617 None:intergenic 45.0%
GTAATGGCTGTGGAATTTGC+AGG - chr1.2:30766028-30766047 MS.gene41351:intron 45.0%
TATAACACACGACAGACGAG+AGG - chr1.2:30767693-30767712 MS.gene41351:CDS 45.0%
TCTCGTCTGTCGTGTGTTAT+AGG + chr1.2:30767694-30767713 None:intergenic 45.0%
TGTGTTACCCGTAACAGGTT+TGG - chr1.2:30767592-30767611 MS.gene41351:CDS 45.0%
TTGCCTCATTGTGACAATGG+CGG + chr1.2:30764813-30764832 None:intergenic 45.0%
TTTGCAGATGCCAACACTAC+CGG - chr1.2:30764740-30764759 MS.gene41351:intron 45.0%
! ACATAGAGGGCATGTATACC+TGG + chr1.2:30767132-30767151 None:intergenic 45.0%
! ATTTTATGGGATCGGAGGGA+GGG + chr1.2:30766194-30766213 None:intergenic 45.0%
! TATTTTATGGGATCGGAGGG+AGG + chr1.2:30766195-30766214 None:intergenic 45.0%
! TCAAATCTGGAATCCTTGCC+TGG - chr1.2:30764577-30764596 MS.gene41351:CDS 45.0%
! TTGTTGCTTCTCAACTCTGC+TGG - chr1.2:30766577-30766596 MS.gene41351:intron 45.0%
!! ACACCTGTTTGACTTGGTGT+CGG + chr1.2:30765049-30765068 None:intergenic 45.0%
!! CAGCATATGGTCTTGTGCTA+TGG + chr1.2:30765624-30765643 None:intergenic 45.0%
!!! ACTATTTTTTTTTTTTTTTT+TGG - chr1.2:30765374-30765393 MS.gene41351:intron 5.0%
AACAGTCACACCTGTGTGGA+AGG - chr1.2:30766602-30766621 MS.gene41351:intron 50.0%
ACAAGGTGTGCCAACCTAGT+GGG + chr1.2:30765442-30765461 None:intergenic 50.0%
ACTTGATGCTTCTCCAGGCA+AGG + chr1.2:30764593-30764612 None:intergenic 50.0%
ATGCATTGCTCCTTCCACAC+AGG + chr1.2:30766615-30766634 None:intergenic 50.0%
GGAAAACAGTCACACCTGTG+TGG - chr1.2:30766598-30766617 MS.gene41351:intron 50.0%
GTCAAGGGTTTGGGAGAGAT+TGG - chr1.2:30767172-30767191 MS.gene41351:CDS 50.0%
TACAAGGTGTGCCAACCTAG+TGG + chr1.2:30765443-30765462 None:intergenic 50.0%
TGCAACAAGGAGCCCTGATT+CGG + chr1.2:30764774-30764793 None:intergenic 50.0%
TGCAATGACTGCGGAAACAC+CGG - chr1.2:30767621-30767640 MS.gene41351:CDS 50.0%
TGGATCCTGTGCAATGACTG+CGG - chr1.2:30767612-30767631 MS.gene41351:CDS 50.0%
TGTTTCCGCAGTCATTGCAC+AGG + chr1.2:30767620-30767639 None:intergenic 50.0%
TTGCCGCCATTGTCACAATG+AGG - chr1.2:30764807-30764826 MS.gene41351:intron 50.0%
!! ACCTGTTTGACTTGGTGTCG+GGG + chr1.2:30765047-30765066 None:intergenic 50.0%
!! CACCTGTTTGACTTGGTGTC+GGG + chr1.2:30765048-30765067 None:intergenic 50.0%
ACCGGAGAAGATGCCGAATC+AGG - chr1.2:30764758-30764777 MS.gene41351:intron 55.0%
CCGGAGAAGATGCCGAATCA+GGG - chr1.2:30764759-30764778 MS.gene41351:intron 55.0%
GGCATCTTCTCCGGTAGTGT+TGG + chr1.2:30764753-30764772 None:intergenic 55.0%
TGATTGCCCCGTGTGTTTCG+AGG - chr1.2:30766637-30766656 MS.gene41351:intron 55.0%
! GGAGCTTTGTGAGCACTCAC+CGG + chr1.2:30767047-30767066 None:intergenic 55.0%
!! ATCACAGGGAGCACTAGGCA+AGG + chr1.2:30765476-30765495 None:intergenic 55.0%
!! CCCTGATTCGGCATCTTCTC+CGG + chr1.2:30764762-30764781 None:intergenic 55.0%
GCCCCGACACCAAGTCAAAC+AGG - chr1.2:30765043-30765062 MS.gene41351:CDS 60.0%
TTATGGGATCGGAGGGAGGG+TGG + chr1.2:30766191-30766210 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 30764499 30767719 30764499 ID=MS.gene41351
chr1.2 mRNA 30764499 30767719 30764499 ID=MS.gene41351.t1;Parent=MS.gene41351
chr1.2 exon 30767556 30767719 30767556 ID=MS.gene41351.t1.exon1;Parent=MS.gene41351.t1
chr1.2 CDS 30767556 30767719 30767556 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30767384 30767471 30767384 ID=MS.gene41351.t1.exon2;Parent=MS.gene41351.t1
chr1.2 CDS 30767384 30767471 30767384 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30767154 30767213 30767154 ID=MS.gene41351.t1.exon3;Parent=MS.gene41351.t1
chr1.2 CDS 30767154 30767213 30767154 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30766997 30767029 30766997 ID=MS.gene41351.t1.exon4;Parent=MS.gene41351.t1
chr1.2 CDS 30766997 30767029 30766997 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30766371 30766448 30766371 ID=MS.gene41351.t1.exon5;Parent=MS.gene41351.t1
chr1.2 CDS 30766371 30766448 30766371 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30766169 30766212 30766169 ID=MS.gene41351.t1.exon6;Parent=MS.gene41351.t1
chr1.2 CDS 30766169 30766212 30766169 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30765749 30765789 30765749 ID=MS.gene41351.t1.exon7;Parent=MS.gene41351.t1
chr1.2 CDS 30765749 30765789 30765749 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30765560 30765642 30765560 ID=MS.gene41351.t1.exon8;Parent=MS.gene41351.t1
chr1.2 CDS 30765560 30765642 30765560 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30765172 30765263 30765172 ID=MS.gene41351.t1.exon9;Parent=MS.gene41351.t1
chr1.2 CDS 30765172 30765263 30765172 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30764974 30765085 30764974 ID=MS.gene41351.t1.exon10;Parent=MS.gene41351.t1
chr1.2 CDS 30764974 30765085 30764974 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
chr1.2 exon 30764499 30764609 30764499 ID=MS.gene41351.t1.exon11;Parent=MS.gene41351.t1
chr1.2 CDS 30764499 30764609 30764499 ID=cds.MS.gene41351.t1;Parent=MS.gene41351.t1
Gene Sequence

>MS.gene41351

ATGGATGATGTGGCAGCGTTGCACTCTGAATGCAATGACACGAAACATACGACCCAAGAAGACGTTAATCCTCCAAAATCAAATCTGGAATCCTTGCCTGGAGAAGCATCAAGTGAATCTATAAACACAAATGATTTGCAAGATAAAGGATACATGGAATATGGGTAATTTCTTGTTCATATGCTTCTTTCTGGTTTTCAAATTGTTGCGTTTCCTGCTCCTTTTATAAAATTAGTCTTTATTTGCAGATGCCAACACTACCGGAGAAGATGCCGAATCAGGGCTCCTTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAGTGAGTAAATGCCTTACCTATTTTTCATAAGCGTAATTTGTTTCATATCATTCAGCCAGTCTCATTACTTATTTTTTATAACTTCAGAATCTACTATGACGATCAATTCTTGTGTTGTGATATTTTTAAATTTTTGGGGAACTTATTTTTATTATTATGCTTTTCTACAGAATGATATCAACGTAGATTATAAACATAGACACGAAATGCCCCGACACCAAGTCAAACAGGTGTTTTTATCAACTTGGGGACGTCCTTAATTGAAATATCCACAAATTTTTGCACCTTTTCCTGTTATTTCATGGACAAGGTACTCCTTAATTCTAATAGAATAATTTTGTGCACTTTATTCAGGTGATATGTTCACTTTGTGCAACTGAACAAGAGGTGAGTTAGAATTTCTTCAATATCCTAGTTATTTTGTTGTTGTGATATACTGATATTGAATTTATAAAGGAGGATGTAAATATTAGTTTGATATAAGTTGAATCTTTATTTTCTGTAACTAAGAAACAAAATTTCTCTGCCTATGATTATATACTATTTTTTTTTTTTTTTTTGGTAATTTAAGAGCATAGTAACATCAAAGAGAATATAATACATGCCCACTAGGTTGGCACACCTTGTAGACTCTAATTCCTTGCCTAGTGCTCCCTGTGATTATATACATGTAAGCACATGCATAAAGAAAATAAAATGGTGCGTCTGTTAAGCTTATTACTGTCTGGAGGTTATTCCAGATGTTTTGCGCTATGGTAGTTTCACGAATGTTGTCTAATATATTAACCATAGCACAAGACCATATGCTGGCTGAAACTGTTTGATAAGTCCAATCTTTGTTTTTCTCAATGAATCATCTAGTATGATATACAAACAATCTTTTTTGAACGTATGAAGCTAAGCTATTTTCTTGTGATGCTTTTTACTACTTTCAGGTTCAGCCAAATTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGAGACATGCAAGCTTTTTGACGATGATGTGAGTATTAATCCTAGGAATGAGATTCCTTTTTGTTCTAATGTTGCATATATATTTTTATTTTATTCTGCATTTTAAATTTAAATGATTGTTTGTCGTAAGCATAGACCAGCGAGTCTATAACTAGTGTACTATCCGTTTCCTTTTATATGATGCAGATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGGTATGAAATGATAATCTGGTTAGGAACATAACAAATTGCATCATTATTAGGGATGGTAACATGTTTTAATGCGGATCCCCCTTTGTTTCATTTTGTTTTTCAGTCTATTAATTATGAAATTTACATGTCACTTTAGCACCACCCTCCCTCCGATCCCATAAAATATTTATCATTTGCATGTCAGCTAAACTAGCCTAGTACTCAACTTTACCCTGTTTTTAGGGATTTATTTGGAAAAATGAAAATGCAATGCCATATTTGTACTTGCTATTTTGTTTTTACACATCTTTTCACTATTGCATTTAACTCTGATCTCATTTTTACTCTGCTTTTCCTTTTGCCTTGCCTTAACTGATTGATTTTGATATTCTTTGCACAGAACTGGTGGACATGAGACTTTCTTCCATTGTAACAAGTGTGGTAAGCGATATCATTTTTTTTTTTTTCATGCGTTTTGATTAGTCTACTACTAAGCAGAAATGTCAAAATTTAAAATTTACTACTCGTTTGACATTCATGATTATAGGTTGTTGCTTCTCAACTCTGCTGGAAAACAGTCACACCTGTGTGGAAGGAGCAATGCATCGTGATTGCCCCGTGTGTTTCGAGGTAACATTTACAATTTTCATGGTTTAGAAACAGCTTAGGTAAACTTCTCAACAAGTACTTATGAGAAAAGAAATGCTAAGAGTCCTGTAATAGTTATGAATATAATTCACGGTTCTACTGCTCATAAGAATTATTATATCCAGTAAAAAATTATTGTATCAGTGAAGAATTATAAATATTTCAATTAAGAAGTTTATATATGCTAGAGTTATTTTAAATTGGATCTCATATATCACTAAGTCTGCTTTTTATATTTCTGGAGGCTGATTTACGCATGTCGAAATTGATGATTGCAGTATTTATTTGAATCAACAAAAGAAATTGTTGTTATGCCGTGCGGACATACAATCCATAAAAGCTGTATAGATGAAATGAGAGAACATCACCGGTGAGTGCTCACAAAGCTCCTAGTCTCTTTACTTCTCCATCCCTTTCTGAATATTGTTCTTTTTCTTGTATTTGATTGTATACCAGGTATACATGCCCTCTATGTTCGAAGTCGTTCTGTGATATGTCAAGGGTTTGGGAGAGATTGGACATCGAGATTGCTGCTACGCCAATGCCTGAGCAATACCAAAATAAAATGGTCAGTTCTCCTCTTTTCCTTACTGTTTATTATTTATACTATGAGTATGTTCAATACTCGTACGCAGAATAAGTAATTGTTATATTTTGCGCGATATGCACATGTATGTATTGGATAGAACACTAAGAACTAGGTATTTATTTTTGTTCTGTTGGTTCATTAATTTTTGGCAAATCCTACCTGTCATTCATATCAAGTATAGCTAGATGTTTGTACTATTCATGTCTTATTGTTGCTTTGGAGGTGTATATAGAGTCATAGACTGATTTTCCTTCTCCTTCAATATGCATTGAGAGTCAGTTATTTGTGGTTTGTTTTATTGACATCTTAAATTCAAGGGGTCTGATTGTGTTACCCGTAACAGGTTTGGATCCTGTGCAATGACTGCGGAAACACCGGTCATGTTCGTTTCCATTTTGTGGCTCTAAAATGCCTCAACTGCAACTCCTATAACACACGACAGACGAGAGGATGA
Protein sequence

>MS.gene41351.t1

MDDVAALHSECNDTKHTTQEDVNPPKSNLESLPGEASSESINTNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHEMPRHQVKQVICSLCATEQEVQPNCINCGVCMGKYFCETCKLFDDDISKQQYHCNGCGICRTGGHETFFHCNKCGCCFSTLLENSHTCVEGAMHRDCPVCFEYLFESTKEIVVMPCGHTIHKSCIDEMREHHRYTCPLCSKSFCDMSRVWERLDIEIAATPMPEQYQNKMVWILCNDCGNTGHVRFHFVALKCLNCNSYNTRQTRG