Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41397.t1 | XP_003592304.1 | 92.8 | 291 | 21 | 0 | 1 | 291 | 1 | 291 | 5.20E-155 | 557 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41397.t1 | Q9LEX0 | 59.2 | 284 | 112 | 2 | 1 | 283 | 1 | 281 | 8.3e-101 | 368.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41397.t1 | G7IAQ2 | 92.8 | 291 | 21 | 0 | 1 | 291 | 1 | 291 | 3.8e-155 | 557.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41397 | MS.gene72988 | PPI |
| MS.gene41397 | MS.gene033388 | PPI |
| MS.gene41397 | MS.gene011426 | PPI |
| MS.gene41397 | MS.gene015544 | PPI |
| MS.gene41397 | MS.gene20125 | PPI |
| MS.gene41397 | MS.gene015546 | PPI |
| MS.gene41397 | MS.gene072814 | PPI |
| MS.gene41397 | MS.gene22617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41397.t1 | MTR_1g101390 | 94.502 | 291 | 16 | 0 | 1 | 291 | 1 | 291 | 0.0 | 545 |
| MS.gene41397.t1 | MTR_0113s0040 | 72.792 | 283 | 77 | 0 | 9 | 291 | 3 | 285 | 2.37e-158 | 442 |
| MS.gene41397.t1 | MTR_0002s0020 | 59.155 | 284 | 105 | 3 | 1 | 279 | 1 | 278 | 1.22e-123 | 355 |
| MS.gene41397.t1 | MTR_4g102770 | 61.923 | 260 | 98 | 1 | 28 | 286 | 19 | 278 | 6.38e-121 | 348 |
| MS.gene41397.t1 | MTR_5g010800 | 56.506 | 269 | 113 | 3 | 19 | 286 | 10 | 275 | 2.32e-112 | 326 |
| MS.gene41397.t1 | MTR_7g103380 | 52.349 | 298 | 122 | 2 | 1 | 287 | 1 | 289 | 2.49e-111 | 324 |
| MS.gene41397.t1 | MTR_7g112550 | 25.704 | 284 | 183 | 6 | 23 | 281 | 2 | 282 | 1.36e-25 | 103 |
| MS.gene41397.t1 | MTR_7g112560 | 23.077 | 260 | 194 | 5 | 31 | 286 | 4 | 261 | 2.94e-25 | 101 |
| MS.gene41397.t1 | MTR_1g079260 | 26.132 | 287 | 168 | 5 | 26 | 283 | 2 | 273 | 4.14e-24 | 99.0 |
| MS.gene41397.t1 | MTR_1g100597 | 27.273 | 286 | 162 | 6 | 26 | 281 | 2 | 271 | 5.80e-24 | 98.6 |
| MS.gene41397.t1 | MTR_4g023570 | 24.125 | 257 | 173 | 6 | 31 | 285 | 4 | 240 | 1.06e-23 | 97.1 |
| MS.gene41397.t1 | MTR_1g079140 | 37.762 | 143 | 86 | 2 | 30 | 169 | 15 | 157 | 1.54e-22 | 95.5 |
| MS.gene41397.t1 | MTR_1g079460 | 36.620 | 142 | 88 | 2 | 30 | 169 | 6 | 147 | 5.19e-22 | 93.2 |
| MS.gene41397.t1 | MTR_1g079180 | 34.932 | 146 | 93 | 2 | 26 | 169 | 2 | 147 | 3.49e-21 | 90.9 |
| MS.gene41397.t1 | MTR_3g452600 | 29.391 | 279 | 150 | 9 | 28 | 281 | 10 | 266 | 1.98e-20 | 89.0 |
| MS.gene41397.t1 | MTR_1g083580 | 34.266 | 143 | 92 | 2 | 31 | 171 | 11 | 153 | 4.63e-20 | 88.2 |
| MS.gene41397.t1 | MTR_1g100613 | 31.319 | 182 | 110 | 3 | 45 | 225 | 6 | 173 | 1.97e-19 | 85.5 |
| MS.gene41397.t1 | MTR_1g079370 | 27.778 | 270 | 174 | 9 | 26 | 281 | 2 | 264 | 1.28e-18 | 83.6 |
| MS.gene41397.t1 | MTR_1g079230 | 27.848 | 237 | 150 | 5 | 26 | 255 | 2 | 224 | 2.23e-18 | 83.2 |
| MS.gene41397.t1 | MTR_1g079380 | 35.862 | 145 | 90 | 2 | 26 | 169 | 2 | 144 | 3.31e-18 | 83.2 |
| MS.gene41397.t1 | MTR_1g079200 | 26.087 | 276 | 162 | 10 | 30 | 281 | 6 | 263 | 1.67e-17 | 80.5 |
| MS.gene41397.t1 | MTR_3g450990 | 27.719 | 285 | 163 | 10 | 28 | 281 | 10 | 282 | 1.83e-16 | 78.2 |
| MS.gene41397.t1 | MTR_1g079410 | 32.639 | 144 | 94 | 2 | 31 | 171 | 11 | 154 | 5.75e-15 | 73.6 |
| MS.gene41397.t1 | MTR_1g079850 | 31.034 | 145 | 97 | 2 | 30 | 171 | 6 | 150 | 4.28e-14 | 71.2 |
| MS.gene41397.t1 | MTR_1g079400 | 27.461 | 193 | 134 | 4 | 18 | 205 | 2 | 193 | 4.41e-13 | 68.6 |
| MS.gene41397.t1 | MTR_1g079250 | 31.944 | 144 | 96 | 2 | 30 | 171 | 6 | 149 | 6.07e-13 | 68.2 |
| MS.gene41397.t1 | MTR_2g079100 | 25.957 | 235 | 148 | 5 | 21 | 251 | 2 | 214 | 8.15e-13 | 67.4 |
| MS.gene41397.t1 | MTR_1g079350 | 27.861 | 201 | 119 | 7 | 30 | 221 | 6 | 189 | 1.69e-11 | 63.9 |
| MS.gene41397.t1 | MTR_3g006850 | 30.000 | 160 | 92 | 5 | 26 | 169 | 15 | 170 | 4.13e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41397.t1 | AT3G61060 | 60.211 | 284 | 109 | 3 | 1 | 283 | 1 | 281 | 9.40e-129 | 368 |
| MS.gene41397.t1 | AT3G61060 | 60.000 | 285 | 109 | 4 | 1 | 283 | 1 | 282 | 5.27e-127 | 363 |
| MS.gene41397.t1 | AT5G52120 | 55.390 | 269 | 114 | 1 | 27 | 289 | 20 | 288 | 1.17e-111 | 325 |
| MS.gene41397.t1 | AT1G12710 | 56.667 | 270 | 111 | 3 | 25 | 291 | 25 | 291 | 1.27e-105 | 309 |
| MS.gene41397.t1 | AT1G63090 | 54.478 | 268 | 120 | 2 | 25 | 291 | 23 | 289 | 1.86e-101 | 298 |
| MS.gene41397.t1 | AT3G53000 | 49.315 | 292 | 129 | 3 | 1 | 281 | 1 | 284 | 1.17e-98 | 292 |
| MS.gene41397.t1 | AT1G12710 | 49.038 | 312 | 111 | 4 | 25 | 291 | 25 | 333 | 1.42e-96 | 288 |
| MS.gene41397.t1 | AT1G09155 | 23.569 | 297 | 173 | 6 | 31 | 287 | 3 | 285 | 2.13e-22 | 94.7 |
| MS.gene41397.t1 | AT2G02240 | 28.881 | 277 | 151 | 7 | 31 | 283 | 64 | 318 | 1.97e-21 | 92.4 |
| MS.gene41397.t1 | AT2G02360 | 37.681 | 138 | 80 | 2 | 33 | 169 | 19 | 151 | 2.43e-21 | 91.3 |
| MS.gene41397.t1 | AT2G02230 | 32.278 | 158 | 99 | 3 | 15 | 171 | 21 | 171 | 4.45e-19 | 86.3 |
| MS.gene41397.t1 | AT5G24560 | 27.160 | 162 | 106 | 3 | 30 | 184 | 5 | 161 | 4.49e-18 | 80.9 |
| MS.gene41397.t1 | AT2G02340 | 30.994 | 171 | 102 | 4 | 19 | 181 | 27 | 189 | 2.61e-17 | 80.9 |
| MS.gene41397.t1 | AT1G80110 | 26.119 | 268 | 173 | 8 | 28 | 282 | 1 | 256 | 3.30e-17 | 79.7 |
| MS.gene41397.t1 | AT2G02350 | 30.769 | 156 | 101 | 3 | 13 | 166 | 9 | 159 | 1.34e-16 | 78.6 |
| MS.gene41397.t1 | AT2G02310 | 35.878 | 131 | 78 | 2 | 30 | 159 | 47 | 172 | 1.36e-16 | 79.0 |
| MS.gene41397.t1 | AT2G02250 | 25.000 | 308 | 185 | 9 | 2 | 283 | 18 | 305 | 2.40e-16 | 78.2 |
| MS.gene41397.t1 | AT1G56250 | 23.973 | 292 | 166 | 7 | 31 | 281 | 4 | 280 | 6.47e-15 | 73.6 |
| MS.gene41397.t1 | AT1G56240 | 22.635 | 296 | 173 | 6 | 31 | 285 | 4 | 284 | 7.43e-15 | 73.6 |
| MS.gene41397.t1 | AT2G02300 | 26.335 | 281 | 166 | 9 | 22 | 285 | 28 | 284 | 1.04e-12 | 67.4 |
Find 58 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGCTTATAAATTTCT+TGG | 0.233636 | 1.4:+78724469 | MS.gene41397:CDS |
| TCCACCTGATATATGCAAAT+TGG | 0.341137 | 1.4:+78724369 | MS.gene41397:CDS |
| ATGTGGTGGGTTGAAGTAAT+AGG | 0.354758 | 1.4:+78727191 | MS.gene41397:CDS |
| TCAAAGTCTTTGAAGATAAC+AGG | 0.357934 | 1.4:+78724776 | MS.gene41397:CDS |
| TTACCATGTCGGAGATTTCA+TGG | 0.374283 | 1.4:+78727424 | MS.gene41397:CDS |
| CATAACCTTCAGACTCCAAT+TGG | 0.381488 | 1.4:+78727250 | MS.gene41397:CDS |
| TGGATCAAGATGCATGAGTA+TGG | 0.388988 | 1.4:-78724350 | None:intergenic |
| CTAGCCAATTTGCATATATC+AGG | 0.392374 | 1.4:-78724373 | None:intergenic |
| GAGTGTTATTTGCATGGGCC+AGG | 0.404946 | 1.4:+78727389 | MS.gene41397:CDS |
| GAATAGATGATAGAAGATAT+TGG | 0.414837 | 1.4:+78724798 | MS.gene41397:CDS |
| GACATCTTTCTTAGTCATAG+TGG | 0.416582 | 1.4:-78724506 | None:intergenic |
| ATTTGCATGGGCCAGGGCAA+TGG | 0.434099 | 1.4:+78727396 | MS.gene41397:CDS |
| AGTCTTTCTCTAAACTCAGT+TGG | 0.439576 | 1.4:-78727548 | None:intergenic |
| ATCAATGCAGAGGCCACCTT+TGG | 0.442592 | 1.4:-78727510 | None:intergenic |
| GTCTTTCTCTAAACTCAGTT+GGG | 0.451843 | 1.4:-78727547 | None:intergenic |
| GTCAACCTAATCGCTTTGAC+GGG | 0.451892 | 1.4:+78724542 | MS.gene41397:CDS |
| TTTGCATGGGCCAGGGCAAT+GGG | 0.454283 | 1.4:+78727397 | MS.gene41397:CDS |
| TGCAACGTTGATCAAGTTCA+TGG | 0.455459 | 1.4:+78727305 | MS.gene41397:CDS |
| ATCTCAGAGTGTTATTTGCA+TGG | 0.460843 | 1.4:+78727383 | MS.gene41397:CDS |
| TGGTAATATGCCCATTGCCC+TGG | 0.477118 | 1.4:-78727407 | None:intergenic |
| CGTTGATCAAGTTCATGGTT+GGG | 0.477900 | 1.4:+78727310 | MS.gene41397:CDS |
| AATTCATCATCATCAAGAAC+GGG | 0.479897 | 1.4:+78724295 | MS.gene41397:CDS |
| GGGAAAGTCATCAAAACGAT+TGG | 0.489012 | 1.4:+78727271 | MS.gene41397:CDS |
| CTGATATATGCAAATTGGCT+AGG | 0.492079 | 1.4:+78724374 | MS.gene41397:CDS |
| TCTCACCTGGATTCCTCAGT+TGG | 0.494511 | 1.4:-78724830 | None:intergenic |
| ACATTCCAACTGAGGAATCC+AGG | 0.495554 | 1.4:+78724825 | MS.gene41397:CDS |
| GGAAAGTCATCAAAACGATT+GGG | 0.522230 | 1.4:+78727272 | MS.gene41397:CDS |
| GTAGAGAGTTGAAATCTAAC+GGG | 0.524396 | 1.4:-78727341 | None:intergenic |
| CTTTCCCAATTGGAGTCTGA+AGG | 0.526720 | 1.4:-78727255 | None:intergenic |
| TGTCAACCTAATCGCTTTGA+CGG | 0.529580 | 1.4:+78724541 | MS.gene41397:CDS |
| TAATTCATCATCATCAAGAA+CGG | 0.545437 | 1.4:+78724294 | MS.gene41397:CDS |
| ACGTTGATCAAGTTCATGGT+TGG | 0.551053 | 1.4:+78727309 | MS.gene41397:CDS |
| GCAAGAAACTTGTAGCATGA+TGG | 0.553327 | 1.4:-78724454 | None:intergenic |
| ATAACCTTCAGACTCCAATT+GGG | 0.554699 | 1.4:+78727251 | MS.gene41397:CDS |
| TGTAGAGAGTTGAAATCTAA+CGG | 0.556918 | 1.4:-78727342 | None:intergenic |
| TCTCAGAGTGTTATTTGCAT+GGG | 0.559048 | 1.4:+78727384 | MS.gene41397:CDS |
| CTAGAGTTTGTGTTCCCTGT+GGG | 0.560595 | 1.4:+78727218 | MS.gene41397:CDS |
| GCCAATTTGCATATATCAGG+TGG | 0.562917 | 1.4:-78724370 | None:intergenic |
| CATATCTTCAACAAATGTGG+TGG | 0.568286 | 1.4:+78727177 | MS.gene41397:CDS |
| CATGTACAGGTTCAAGAATG+TGG | 0.568884 | 1.4:+78727154 | MS.gene41397:intron |
| TGATATATGCAAATTGGCTA+GGG | 0.577318 | 1.4:+78724375 | MS.gene41397:CDS |
| AGTGTTATTTGCATGGGCCA+GGG | 0.596672 | 1.4:+78727390 | MS.gene41397:CDS |
| GTTATGCTGTAACTTCCCAC+AGG | 0.602467 | 1.4:-78727233 | None:intergenic |
| ATTGATTGTACTCATACCAA+AGG | 0.618798 | 1.4:+78727494 | MS.gene41397:CDS |
| CAACCATGAAATCTCCGACA+TGG | 0.619205 | 1.4:-78727427 | None:intergenic |
| GATTGTACTCATACCAAAGG+TGG | 0.620193 | 1.4:+78727497 | MS.gene41397:CDS |
| CAACCTAATCGCTTTGACGG+GGG | 0.620505 | 1.4:+78724544 | MS.gene41397:CDS |
| TTGGATTTACATTCCAACTG+AGG | 0.622680 | 1.4:+78724817 | MS.gene41397:CDS |
| TCAACCTAATCGCTTTGACG+GGG | 0.627484 | 1.4:+78724543 | MS.gene41397:CDS |
| CAATGGGCATATTACCATGT+CGG | 0.636810 | 1.4:+78727413 | MS.gene41397:CDS |
| AAGAAGCTCTATGAAAAGCA+CGG | 0.646856 | 1.4:-78724402 | None:intergenic |
| TAGATTTCAACTCTCTACAT+CGG | 0.647063 | 1.4:+78727346 | MS.gene41397:CDS |
| TTTCAACTCTCTACATCGGA+CGG | 0.650653 | 1.4:+78727350 | MS.gene41397:CDS |
| GCTAGAGTTTGTGTTCCCTG+TGG | 0.654836 | 1.4:+78727217 | MS.gene41397:CDS |
| TAATTGCACTATCAATGCAG+AGG | 0.663535 | 1.4:-78727520 | None:intergenic |
| TGGCATATCTTCAACAAATG+TGG | 0.668014 | 1.4:+78727174 | MS.gene41397:CDS |
| ATATCTTCAACAAATGTGGT+GGG | 0.687256 | 1.4:+78727178 | MS.gene41397:CDS |
| TTATGCTGTAACTTCCCACA+GGG | 0.700073 | 1.4:-78727232 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAACTTATAAATATAAATA+TGG | + | chr1.4:78724904-78724923 | MS.gene41397:intron | 10.0% |
| !! | TTAACAAATATCTATTAAAA+TGG | + | chr1.4:78726583-78726602 | MS.gene41397:intron | 10.0% |
| !!! | TATATAAATTTAATTTAGAC+AGG | - | chr1.4:78726716-78726735 | None:intergenic | 10.0% |
| !! | AAGGAAAAAAAAAAATCAAA+AGG | - | chr1.4:78724659-78724678 | None:intergenic | 15.0% |
| !! | TACAAATCAATTAAAATCAA+TGG | + | chr1.4:78726142-78726161 | MS.gene41397:intron | 15.0% |
| !! | TTAAATTTCTACACTAAATT+TGG | - | chr1.4:78725811-78725830 | None:intergenic | 15.0% |
| !! | TTGGTCAAATAATAAATATT+AGG | + | chr1.4:78726038-78726057 | MS.gene41397:intron | 15.0% |
| !!! | ACATGCATTTAATTTTATAT+TGG | - | chr1.4:78725278-78725297 | None:intergenic | 15.0% |
| !!! | ATACTTTTTAAGAATGAATT+AGG | + | chr1.4:78725486-78725505 | MS.gene41397:intron | 15.0% |
| !!! | GATTTTTTTGCTTATATTTT+AGG | - | chr1.4:78725173-78725192 | None:intergenic | 15.0% |
| !!! | TAAATGATATTTTAATCCAT+GGG | - | chr1.4:78726195-78726214 | None:intergenic | 15.0% |
| !!! | TTTTTGCTTATAAAAAAAGA+CGG | + | chr1.4:78725453-78725472 | MS.gene41397:intron | 15.0% |
| !! | AAACAAAGATCAAATATAAG+AGG | - | chr1.4:78724939-78724958 | None:intergenic | 20.0% |
| !! | AACTAATTGAAAATGCAAAA+TGG | + | chr1.4:78727104-78727123 | MS.gene41397:intron | 20.0% |
| !! | AAGAAAAGCAGTAATATTAA+CGG | - | chr1.4:78726835-78726854 | None:intergenic | 20.0% |
| !! | AGATGAAAGTTTAATATGTT+AGG | + | chr1.4:78726007-78726026 | MS.gene41397:intron | 20.0% |
| !! | ATTAACCCTAAAAATTTAGA+AGG | + | chr1.4:78726280-78726299 | MS.gene41397:intron | 20.0% |
| !! | CACAATAATAACATAAAAGT+TGG | - | chr1.4:78725231-78725250 | None:intergenic | 20.0% |
| !! | GATGTAAAAATAATTCTCAT+TGG | - | chr1.4:78725345-78725364 | None:intergenic | 20.0% |
| !! | TCTTATCAAAGATAAACATT+AGG | + | chr1.4:78726992-78727011 | MS.gene41397:intron | 20.0% |
| !! | TTTCTTGCTTATAAATTTCT+TGG | + | chr1.4:78724469-78724488 | MS.gene41397:CDS | 20.0% |
| !!! | ATCTTTTCAAAGTCTTATAT+AGG | + | chr1.4:78726255-78726274 | MS.gene41397:intron | 20.0% |
| !!! | CAAAGAAAACTTGATTTTTA+TGG | - | chr1.4:78727468-78727487 | None:intergenic | 20.0% |
| !!! | CATAAAAATCAAGTTTTCTT+TGG | + | chr1.4:78727466-78727485 | MS.gene41397:CDS | 20.0% |
| !!! | CTAAATGATATTTTAATCCA+TGG | - | chr1.4:78726196-78726215 | None:intergenic | 20.0% |
| !!! | GTTTCTTAATATTTTTCATG+TGG | + | chr1.4:78725846-78725865 | MS.gene41397:intron | 20.0% |
| !!! | TTCTCATTGGTTAAAAATTA+TGG | - | chr1.4:78725332-78725351 | None:intergenic | 20.0% |
| !!! | TTTAAGAAAAAGCAGTTTTT+GGG | + | chr1.4:78725963-78725982 | MS.gene41397:intron | 20.0% |
| !!! | TTTGCATTTTCAATTAGTTT+TGG | - | chr1.4:78727103-78727122 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAAAAGCAGTTTT+TGG | + | chr1.4:78725962-78725981 | MS.gene41397:intron | 20.0% |
| !!! | TTTTTGCTTATATTTTAGGA+CGG | - | chr1.4:78725169-78725188 | None:intergenic | 20.0% |
| ! | AAAATTTAGTCACCCTATAT+TGG | + | chr1.4:78725653-78725672 | MS.gene41397:intron | 25.0% |
| ! | AAATCAAGGATGCTAAAATA+AGG | - | chr1.4:78724596-78724615 | None:intergenic | 25.0% |
| ! | AAATTTAGTCACCCTATATT+GGG | + | chr1.4:78725654-78725673 | MS.gene41397:intron | 25.0% |
| ! | CGCATAAATGTGTTTATAAA+CGG | + | chr1.4:78725757-78725776 | MS.gene41397:intron | 25.0% |
| ! | GAATAGATGATAGAAGATAT+TGG | + | chr1.4:78724798-78724817 | MS.gene41397:CDS | 25.0% |
| ! | TAAGATAGAGTAACTTACTT+TGG | - | chr1.4:78724572-78724591 | None:intergenic | 25.0% |
| ! | TAATTCATCATCATCAAGAA+CGG | + | chr1.4:78724294-78724313 | MS.gene41397:CDS | 25.0% |
| ! | TACATCAAATCACTAAGTAT+TGG | + | chr1.4:78725404-78725423 | MS.gene41397:intron | 25.0% |
| ! | TCATCAAAATTGAATGAAGA+AGG | - | chr1.4:78724678-78724697 | None:intergenic | 25.0% |
| ! | TGAGAATCGCATATTATAAT+GGG | - | chr1.4:78726811-78726830 | None:intergenic | 25.0% |
| ! | TTAAAAGCCTATTTGCAAAT+TGG | + | chr1.4:78726431-78726450 | MS.gene41397:intron | 25.0% |
| ! | TTGAGAATCGCATATTATAA+TGG | - | chr1.4:78726812-78726831 | None:intergenic | 25.0% |
| ! | TTGATGTGTGAATAATTTGA+TGG | - | chr1.4:78725560-78725579 | None:intergenic | 25.0% |
| ! | TTTCCATGAAACTTATTCTA+AGG | + | chr1.4:78725365-78725384 | MS.gene41397:intron | 25.0% |
| !! | ACAGTTCCTTCTAAATTTTT+AGG | - | chr1.4:78726289-78726308 | None:intergenic | 25.0% |
| !! | ATGAAAATGACCTTTGTTTA+AGG | + | chr1.4:78726550-78726569 | MS.gene41397:intron | 25.0% |
| !! | ATTTTATGTAAACACAAAGC+AGG | - | chr1.4:78725057-78725076 | None:intergenic | 25.0% |
| !! | CAGTTCCTTCTAAATTTTTA+GGG | - | chr1.4:78726288-78726307 | None:intergenic | 25.0% |
| !! | CCTACATATTTTCAAAATAG+TGG | + | chr1.4:78726101-78726120 | MS.gene41397:intron | 25.0% |
| !! | TGAAAATGACCTTTGTTTAA+GGG | + | chr1.4:78726551-78726570 | MS.gene41397:intron | 25.0% |
| !! | TGAATTATACGCATTTTACT+TGG | + | chr1.4:78726770-78726789 | MS.gene41397:intron | 25.0% |
| !! | TTGATTTTTATGGACTCATT+GGG | - | chr1.4:78727458-78727477 | None:intergenic | 25.0% |
| !! | TTTGACTAACTTTTTAATGC+AGG | - | chr1.4:78725104-78725123 | None:intergenic | 25.0% |
| !!! | AATATGTTAGGCTCTTTTTT+TGG | + | chr1.4:78726019-78726038 | MS.gene41397:intron | 25.0% |
| !!! | CAAATTGGCTTATGTTTTTA+TGG | + | chr1.4:78726446-78726465 | MS.gene41397:intron | 25.0% |
| !!! | CATTTAGTTTCTTTTCATTG+AGG | + | chr1.4:78726209-78726228 | MS.gene41397:intron | 25.0% |
| !!! | CCACTATTTTGAAAATATGT+AGG | - | chr1.4:78726104-78726123 | None:intergenic | 25.0% |
| !!! | GTTAATATTACTGCTTTTCT+TGG | + | chr1.4:78726834-78726853 | MS.gene41397:intron | 25.0% |
| !!! | TAGTTTTTTTTTGCATGTAC+AGG | + | chr1.4:78727141-78727160 | MS.gene41397:intron | 25.0% |
| !!! | TCTTGATTTGTTTTTCTTTC+TGG | + | chr1.4:78724700-78724719 | MS.gene41397:intron | 25.0% |
| !!! | TTATACATGTTTAGTCTTGA+AGG | + | chr1.4:78725710-78725729 | MS.gene41397:intron | 25.0% |
| !!! | TTTGTTTTTCTTTCTGGTAT+AGG | + | chr1.4:78724706-78724725 | MS.gene41397:intron | 25.0% |
| AATTCATCATCATCAAGAAC+GGG | + | chr1.4:78724295-78724314 | MS.gene41397:CDS | 30.0% | |
| ACATAAGCCAATTTGCAAAT+AGG | - | chr1.4:78726441-78726460 | None:intergenic | 30.0% | |
| AGGAGAAACTTCACATAATT+GGG | - | chr1.4:78726696-78726715 | None:intergenic | 30.0% | |
| ATAGTTGTTGACCCAATATA+GGG | - | chr1.4:78725668-78725687 | None:intergenic | 30.0% | |
| ATATCTTCAACAAATGTGGT+GGG | + | chr1.4:78727178-78727197 | MS.gene41397:CDS | 30.0% | |
| ATGTGTGAATAATTTGATGG+TGG | - | chr1.4:78725557-78725576 | None:intergenic | 30.0% | |
| ATTGATTGTACTCATACCAA+AGG | + | chr1.4:78727494-78727513 | MS.gene41397:CDS | 30.0% | |
| CAAGACTAAACATGTATAAG+AGG | - | chr1.4:78725709-78725728 | None:intergenic | 30.0% | |
| CATATTCCACGAATAGAATA+TGG | - | chr1.4:78726628-78726647 | None:intergenic | 30.0% | |
| CATTACTTTCCCTTAAACAA+AGG | - | chr1.4:78726563-78726582 | None:intergenic | 30.0% | |
| GGAATATATCCTAATCCAAT+TGG | + | chr1.4:78726855-78726874 | MS.gene41397:intron | 30.0% | |
| TAGATTTCAACTCTCTACAT+CGG | + | chr1.4:78727346-78727365 | MS.gene41397:CDS | 30.0% | |
| TCTCCTTAGAATAAGTTTCA+TGG | - | chr1.4:78725371-78725390 | None:intergenic | 30.0% | |
| TGAAGCTAAGTGAAAAATCA+AGG | - | chr1.4:78724610-78724629 | None:intergenic | 30.0% | |
| TGATATATGCAAATTGGCTA+GGG | + | chr1.4:78724375-78724394 | MS.gene41397:CDS | 30.0% | |
| TGCTTATAAAAAAAGACGGA+GGG | + | chr1.4:78725457-78725476 | MS.gene41397:intron | 30.0% | |
| TGTAGAGAGTTGAAATCTAA+CGG | - | chr1.4:78727345-78727364 | None:intergenic | 30.0% | |
| TTGCTTATAAAAAAAGACGG+AGG | + | chr1.4:78725456-78725475 | MS.gene41397:intron | 30.0% | |
| ! | AATCGCATATTATAATGGGA+AGG | - | chr1.4:78726807-78726826 | None:intergenic | 30.0% |
| ! | ACATTTTCCTGAAATTACGA+TGG | + | chr1.4:78726363-78726382 | MS.gene41397:intron | 30.0% |
| ! | ATCGCATATTATAATGGGAA+GGG | - | chr1.4:78726806-78726825 | None:intergenic | 30.0% |
| ! | CAAATAGTTTGTGTAAGAGA+AGG | + | chr1.4:78725582-78725601 | MS.gene41397:intron | 30.0% |
| ! | CTTGATTTTTATGGACTCAT+TGG | - | chr1.4:78727459-78727478 | None:intergenic | 30.0% |
| ! | GTTTTCAAACCAATTGGATT+AGG | - | chr1.4:78726867-78726886 | None:intergenic | 30.0% |
| ! | TCAAAGTCTTTGAAGATAAC+AGG | + | chr1.4:78724776-78724795 | MS.gene41397:CDS | 30.0% |
| !! | CTGTTTGTTTTCAAACCAAT+TGG | - | chr1.4:78726873-78726892 | None:intergenic | 30.0% |
| !! | TCTGGTATAGGAAGTTTTAT+TGG | + | chr1.4:78724718-78724737 | MS.gene41397:intron | 30.0% |
| !!! | AGGTTGAACTTTTAAGTTAG+TGG | + | chr1.4:78727012-78727031 | MS.gene41397:intron | 30.0% |
| !!! | TTATTTTGACCCTGTATTGA+AGG | + | chr1.4:78724959-78724978 | MS.gene41397:intron | 30.0% |
| AAAGCTTCCATCGTAATTTC+AGG | - | chr1.4:78726373-78726392 | None:intergenic | 35.0% | |
| AAGAAGCTCTATGAAAAGCA+CGG | - | chr1.4:78724405-78724424 | None:intergenic | 35.0% | |
| AGAAACATAGCCTTCAATAC+AGG | - | chr1.4:78724972-78724991 | None:intergenic | 35.0% | |
| AGAATAATCTGAACAACCCA+TGG | + | chr1.4:78726176-78726195 | MS.gene41397:intron | 35.0% | |
| AGTCTTTCTCTAAACTCAGT+TGG | - | chr1.4:78727551-78727570 | None:intergenic | 35.0% | |
| AGTGGTTATAGAAGTGAAAG+TGG | + | chr1.4:78726119-78726138 | MS.gene41397:intron | 35.0% | |
| ATAACCTTCAGACTCCAATT+GGG | + | chr1.4:78727251-78727270 | MS.gene41397:CDS | 35.0% | |
| CAGGAGAAACTTCACATAAT+TGG | - | chr1.4:78726697-78726716 | None:intergenic | 35.0% | |
| CATATCTTCAACAAATGTGG+TGG | + | chr1.4:78727177-78727196 | MS.gene41397:CDS | 35.0% | |
| CTAGCCAATTTGCATATATC+AGG | - | chr1.4:78724376-78724395 | None:intergenic | 35.0% | |
| CTGATATATGCAAATTGGCT+AGG | + | chr1.4:78724374-78724393 | MS.gene41397:CDS | 35.0% | |
| GAAACATAGCCTTCAATACA+GGG | - | chr1.4:78724971-78724990 | None:intergenic | 35.0% | |
| GACACACGTTGAAAATGTTT+AGG | - | chr1.4:78725023-78725042 | None:intergenic | 35.0% | |
| GACATCTTTCTTAGTCATAG+TGG | - | chr1.4:78724509-78724528 | None:intergenic | 35.0% | |
| GATAGTTGTTGACCCAATAT+AGG | - | chr1.4:78725669-78725688 | None:intergenic | 35.0% | |
| GGAAAGTCATCAAAACGATT+GGG | + | chr1.4:78727272-78727291 | MS.gene41397:CDS | 35.0% | |
| GGGTTGTTCAGATTATTCTT+TGG | - | chr1.4:78726175-78726194 | None:intergenic | 35.0% | |
| GTAGAGAGTTGAAATCTAAC+GGG | - | chr1.4:78727344-78727363 | None:intergenic | 35.0% | |
| GTCTTTCTCTAAACTCAGTT+GGG | - | chr1.4:78727550-78727569 | None:intergenic | 35.0% | |
| GTGTTTATAAACGGTGTATG+CGG | + | chr1.4:78725766-78725785 | MS.gene41397:intron | 35.0% | |
| TAATTGCACTATCAATGCAG+AGG | - | chr1.4:78727523-78727542 | None:intergenic | 35.0% | |
| TATGGCAGTTTCTTCATGAA+GGG | + | chr1.4:78726399-78726418 | MS.gene41397:intron | 35.0% | |
| TCCACCTGATATATGCAAAT+TGG | + | chr1.4:78724369-78724388 | MS.gene41397:CDS | 35.0% | |
| TCTCACATTGAAATGAGACA+AGG | + | chr1.4:78725625-78725644 | MS.gene41397:intron | 35.0% | |
| TGGCATATCTTCAACAAATG+TGG | + | chr1.4:78727174-78727193 | MS.gene41397:CDS | 35.0% | |
| TGTATTGAAGGCTATGTTTC+TGG | + | chr1.4:78724971-78724990 | MS.gene41397:intron | 35.0% | |
| TTAGTGGTAAGAAGTTTCTG+TGG | + | chr1.4:78727028-78727047 | MS.gene41397:intron | 35.0% | |
| TTCATGAAGAAACTGCCATA+GGG | - | chr1.4:78726399-78726418 | None:intergenic | 35.0% | |
| TTGGATTTACATTCCAACTG+AGG | + | chr1.4:78724817-78724836 | MS.gene41397:CDS | 35.0% | |
| ! | TAGTTTGTGTAAGAGAAGGT+TGG | + | chr1.4:78725586-78725605 | MS.gene41397:intron | 35.0% |
| ! | TCGCATATTATAATGGGAAG+GGG | - | chr1.4:78726805-78726824 | None:intergenic | 35.0% |
| ! | TTAGAAGGAACTGTTGCTTA+AGG | + | chr1.4:78726295-78726314 | MS.gene41397:intron | 35.0% |
| !! | ATCTCAGAGTGTTATTTGCA+TGG | + | chr1.4:78727383-78727402 | MS.gene41397:CDS | 35.0% |
| !! | GTTTTATTGGACAAATGCAG+TGG | + | chr1.4:78724731-78724750 | MS.gene41397:CDS | 35.0% |
| !! | GTTTTGATGACTTTCCCAAT+TGG | - | chr1.4:78727268-78727287 | None:intergenic | 35.0% |
| !! | TCTCAGAGTGTTATTTGCAT+GGG | + | chr1.4:78727384-78727403 | MS.gene41397:CDS | 35.0% |
| !! | TTTGATGGTGGCTAAATTGA+TGG | - | chr1.4:78725545-78725564 | None:intergenic | 35.0% |
| !!! | TGCTTATATTTTAGGACGGA+GGG | - | chr1.4:78725165-78725184 | None:intergenic | 35.0% |
| !!! | TTCTTCTGCTGATTTTGTGT+GGG | + | chr1.4:78724420-78724439 | MS.gene41397:CDS | 35.0% |
| !!! | TTGCTTATATTTTAGGACGG+AGG | - | chr1.4:78725166-78725185 | None:intergenic | 35.0% |
| ACGTTGATCAAGTTCATGGT+TGG | + | chr1.4:78727309-78727328 | MS.gene41397:CDS | 40.0% | |
| ATGGCAGTTTCTTCATGAAG+GGG | + | chr1.4:78726400-78726419 | MS.gene41397:intron | 40.0% | |
| CAATGGGCATATTACCATGT+CGG | + | chr1.4:78727413-78727432 | MS.gene41397:CDS | 40.0% | |
| CATAACCTTCAGACTCCAAT+TGG | + | chr1.4:78727250-78727269 | MS.gene41397:CDS | 40.0% | |
| CATGTACAGGTTCAAGAATG+TGG | + | chr1.4:78727154-78727173 | MS.gene41397:intron | 40.0% | |
| CGTTGATCAAGTTCATGGTT+GGG | + | chr1.4:78727310-78727329 | MS.gene41397:CDS | 40.0% | |
| CTATGGCAGTTTCTTCATGA+AGG | + | chr1.4:78726398-78726417 | MS.gene41397:intron | 40.0% | |
| CTTCATGAAGAAACTGCCAT+AGG | - | chr1.4:78726400-78726419 | None:intergenic | 40.0% | |
| GATTGTACTCATACCAAAGG+TGG | + | chr1.4:78727497-78727516 | MS.gene41397:CDS | 40.0% | |
| GCAAGAAACTTGTAGCATGA+TGG | - | chr1.4:78724457-78724476 | None:intergenic | 40.0% | |
| GCAATGCCATATTCTATTCG+TGG | + | chr1.4:78726619-78726638 | MS.gene41397:intron | 40.0% | |
| GCCAATTTGCATATATCAGG+TGG | - | chr1.4:78724373-78724392 | None:intergenic | 40.0% | |
| GGGAAAGTCATCAAAACGAT+TGG | + | chr1.4:78727271-78727290 | MS.gene41397:CDS | 40.0% | |
| TCATGAAGAAACTGCCATAG+GGG | - | chr1.4:78726398-78726417 | None:intergenic | 40.0% | |
| TCTATAGTTCATCTCTCACC+TGG | - | chr1.4:78724846-78724865 | None:intergenic | 40.0% | |
| TGCAACGTTGATCAAGTTCA+TGG | + | chr1.4:78727305-78727324 | MS.gene41397:CDS | 40.0% | |
| TGGATCAAGATGCATGAGTA+TGG | - | chr1.4:78724353-78724372 | None:intergenic | 40.0% | |
| TGTCAACCTAATCGCTTTGA+CGG | + | chr1.4:78724541-78724560 | MS.gene41397:CDS | 40.0% | |
| TGTTTAGGAGTCAAGACACA+TGG | - | chr1.4:78725008-78725027 | None:intergenic | 40.0% | |
| TTACCATGTCGGAGATTTCA+TGG | + | chr1.4:78727424-78727443 | MS.gene41397:CDS | 40.0% | |
| TTATGCTGTAACTTCCCACA+GGG | - | chr1.4:78727235-78727254 | None:intergenic | 40.0% | |
| TTTATAAACGGTGTATGCGG+TGG | + | chr1.4:78725769-78725788 | MS.gene41397:intron | 40.0% | |
| TTTCAACTCTCTACATCGGA+CGG | + | chr1.4:78727350-78727369 | MS.gene41397:CDS | 40.0% | |
| ! | CGCATATTATAATGGGAAGG+GGG | - | chr1.4:78726804-78726823 | None:intergenic | 40.0% |
| ! | TATTTTTCATGTGGCAGCTG+AGG | + | chr1.4:78725855-78725874 | MS.gene41397:intron | 40.0% |
| ! | TGGGCAAATAGAAGCTTTTG+TGG | - | chr1.4:78726677-78726696 | None:intergenic | 40.0% |
| !! | ATGTGGTGGGTTGAAGTAAT+AGG | + | chr1.4:78727191-78727210 | MS.gene41397:CDS | 40.0% |
| !!! | CTTCTTCTGCTGATTTTGTG+TGG | + | chr1.4:78724419-78724438 | MS.gene41397:CDS | 40.0% |
| ACATTCCAACTGAGGAATCC+AGG | + | chr1.4:78724825-78724844 | MS.gene41397:CDS | 45.0% | |
| ATGTGGCAGCTGAGGTAAAA+GGG | + | chr1.4:78725863-78725882 | MS.gene41397:intron | 45.0% | |
| CAACCATGAAATCTCCGACA+TGG | - | chr1.4:78727430-78727449 | None:intergenic | 45.0% | |
| CTAGAGTTTGTGTTCCCTGT+GGG | + | chr1.4:78727218-78727237 | MS.gene41397:CDS | 45.0% | |
| CTTTCCCAATTGGAGTCTGA+AGG | - | chr1.4:78727258-78727277 | None:intergenic | 45.0% | |
| GTCAACCTAATCGCTTTGAC+GGG | + | chr1.4:78724542-78724561 | MS.gene41397:CDS | 45.0% | |
| GTGTATGCGGTGGACAATAA+GGG | + | chr1.4:78725779-78725798 | MS.gene41397:intron | 45.0% | |
| GTTATGCTGTAACTTCCCAC+AGG | - | chr1.4:78727236-78727255 | None:intergenic | 45.0% | |
| TCAACCTAATCGCTTTGACG+GGG | + | chr1.4:78724543-78724562 | MS.gene41397:CDS | 45.0% | |
| !! | AGTGTTATTTGCATGGGCCA+GGG | + | chr1.4:78727390-78727409 | MS.gene41397:CDS | 45.0% |
| !!! | TAATTTATAAAGTTTTAATT+AGG | - | chr1.4:78725936-78725955 | None:intergenic | 5.0% |
| ATCAATGCAGAGGCCACCTT+TGG | - | chr1.4:78727513-78727532 | None:intergenic | 50.0% | |
| CAACCTAATCGCTTTGACGG+GGG | + | chr1.4:78724544-78724563 | MS.gene41397:CDS | 50.0% | |
| CATGTGGCAGCTGAGGTAAA+AGG | + | chr1.4:78725862-78725881 | MS.gene41397:intron | 50.0% | |
| GATGGAAGCTTTCACCCCTA+TGG | + | chr1.4:78726381-78726400 | MS.gene41397:intron | 50.0% | |
| GCTAGAGTTTGTGTTCCCTG+TGG | + | chr1.4:78727217-78727236 | MS.gene41397:CDS | 50.0% | |
| GGTGTATGCGGTGGACAATA+AGG | + | chr1.4:78725778-78725797 | MS.gene41397:intron | 50.0% | |
| TCTCACCTGGATTCCTCAGT+TGG | - | chr1.4:78724833-78724852 | None:intergenic | 50.0% | |
| TGGTAATATGCCCATTGCCC+TGG | - | chr1.4:78727410-78727429 | None:intergenic | 50.0% | |
| TGTGGCAGCTGAGGTAAAAG+GGG | + | chr1.4:78725864-78725883 | MS.gene41397:intron | 50.0% | |
| !! | GAGTGTTATTTGCATGGGCC+AGG | + | chr1.4:78727389-78727408 | MS.gene41397:CDS | 50.0% |
| ATTTGCATGGGCCAGGGCAA+TGG | + | chr1.4:78727396-78727415 | MS.gene41397:CDS | 55.0% | |
| GTACCCCCGTCAAAGCGATT+AGG | - | chr1.4:78724550-78724569 | None:intergenic | 55.0% | |
| GTGGCAGCTGAGGTAAAAGG+GGG | + | chr1.4:78725865-78725884 | MS.gene41397:intron | 55.0% | |
| TTTGCATGGGCCAGGGCAAT+GGG | + | chr1.4:78727397-78727416 | MS.gene41397:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78724238 | 78727583 | 78724238 | ID=MS.gene41397 |
| chr1.4 | mRNA | 78724238 | 78727583 | 78724238 | ID=MS.gene41397.t1;Parent=MS.gene41397 |
| chr1.4 | exon | 78724238 | 78724573 | 78724238 | ID=MS.gene41397.t1.exon1;Parent=MS.gene41397.t1 |
| chr1.4 | CDS | 78724238 | 78724573 | 78724238 | ID=cds.MS.gene41397.t1;Parent=MS.gene41397.t1 |
| chr1.4 | exon | 78724728 | 78724846 | 78724728 | ID=MS.gene41397.t1.exon2;Parent=MS.gene41397.t1 |
| chr1.4 | CDS | 78724728 | 78724846 | 78724728 | ID=cds.MS.gene41397.t1;Parent=MS.gene41397.t1 |
| chr1.4 | exon | 78727163 | 78727583 | 78727163 | ID=MS.gene41397.t1.exon3;Parent=MS.gene41397.t1 |
| chr1.4 | CDS | 78727163 | 78727583 | 78727163 | ID=cds.MS.gene41397.t1;Parent=MS.gene41397.t1 |
| Gene Sequence |
| Protein sequence |
