Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41728.t1 | XP_013449504.1 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 1.10E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41728.t1 | Q9LU39 | 25.4 | 244 | 154 | 8 | 41 | 276 | 61 | 284 | 1.7e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41728.t1 | A0A072U1J2 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 7.6e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050315 | MS.gene41728 | 0.802221 | 6.22E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene41728 | 0.831033 | 2.10E-55 | -1.69E-46 |
| MS.gene050950 | MS.gene41728 | 0.828831 | 7.22E-55 | -1.69E-46 |
| MS.gene051838 | MS.gene41728 | 0.85747 | 1.60E-62 | -1.69E-46 |
| MS.gene052982 | MS.gene41728 | 0.825939 | 3.57E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene41728 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene053318 | MS.gene41728 | 0.80854 | 2.95E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene41728 | 0.803499 | 3.39E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene41728 | 0.813549 | 2.42E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene41728 | 0.812087 | 5.06E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene41728 | 0.803453 | 3.46E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene41728 | 0.823585 | 1.28E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene41728 | 0.801772 | 7.69E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene41728 | 0.817485 | 3.22E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene41728 | 0.800522 | 1.39E-48 | -1.69E-46 |
| MS.gene058948 | MS.gene41728 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene41728 | 0.807465 | 4.99E-50 | -1.69E-46 |
| MS.gene059303 | MS.gene41728 | 0.821745 | 3.43E-53 | -1.69E-46 |
| MS.gene060485 | MS.gene41728 | 0.80863 | 2.82E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene41728 | 0.805085 | 1.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41728.t1 | MTR_7g085670 | 97.491 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 0.0 | 563 |
| MS.gene41728.t1 | MTR_7g085670 | 97.740 | 177 | 4 | 0 | 3 | 179 | 50 | 226 | 8.87e-126 | 358 |
| MS.gene41728.t1 | MTR_4g007990 | 28.571 | 245 | 149 | 12 | 36 | 268 | 135 | 365 | 1.92e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41728.t1 | AT3G03890 | 76.357 | 258 | 61 | 0 | 20 | 277 | 62 | 319 | 3.59e-148 | 418 |
| MS.gene41728.t1 | AT3G03890 | 75.000 | 244 | 61 | 0 | 20 | 263 | 62 | 305 | 6.54e-138 | 391 |
| MS.gene41728.t1 | AT1G51560 | 27.626 | 257 | 136 | 12 | 36 | 268 | 141 | 371 | 1.10e-17 | 82.4 |
| MS.gene41728.t1 | AT3G21140 | 29.084 | 251 | 140 | 11 | 36 | 268 | 137 | 367 | 1.50e-17 | 82.0 |
Find 66 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACAAATCGTACAACTTT+TGG | 0.244472 | 7.2:+22143066 | None:intergenic |
| TCCTAAATGTTCAGTGCTTT+TGG | 0.253580 | 7.2:-22143512 | MS.gene41728:CDS |
| GGCCATACGAGCTGCATATT+TGG | 0.255255 | 7.2:-22143241 | MS.gene41728:CDS |
| CTTTGCTGACATAATAGATT+TGG | 0.270171 | 7.2:-22142029 | MS.gene41728:CDS |
| CGAGACATCCCAATGCGTTT+TGG | 0.271589 | 7.2:-22143218 | MS.gene41728:CDS |
| GCCAAAAGCACTGAACATTT+AGG | 0.293730 | 7.2:+22143511 | None:intergenic |
| GGTGTTGCCACAGCTTTGTT+AGG | 0.347039 | 7.2:-22143042 | MS.gene41728:CDS |
| CGGTTATCCATCAGGATCTA+TGG | 0.347934 | 7.2:-22143937 | MS.gene41728:CDS |
| ATGAATCAGGTTGTTTCCTC+TGG | 0.356396 | 7.2:-22145045 | MS.gene41728:intron |
| TCAATTAATTCAAGCTCATC+AGG | 0.370693 | 7.2:-22144992 | MS.gene41728:intron |
| GGCTTGGAAAACTGAGCAAT+GGG | 0.383757 | 7.2:+22142322 | None:intergenic |
| GCCACAGCTTTGTTAGGATC+AGG | 0.395641 | 7.2:-22143036 | MS.gene41728:CDS |
| TCCTGAAGATAGGACTGATT+TGG | 0.404816 | 7.2:-22143482 | MS.gene41728:CDS |
| CAACTTGAGGCTTGGCAGCT+TGG | 0.406436 | 7.2:+22141526 | None:intergenic |
| ACAGTTCGAATTTCTTCAAC+TGG | 0.411436 | 7.2:+22144554 | None:intergenic |
| TCTTCGACTTCAGAGTTTAC+CGG | 0.413103 | 7.2:-22142373 | MS.gene41728:intron |
| TCGTCTAGGTTTCAATGTTA+AGG | 0.415391 | 7.2:-22142005 | MS.gene41728:intron |
| AAGTCGCTCACTGCTAATAT+AGG | 0.415949 | 7.2:+22143885 | None:intergenic |
| TGCTGATTTGTACTCATCTC+CGG | 0.430709 | 7.2:+22142354 | None:intergenic |
| TCTTACTTTCTATCTTCTGC+AGG | 0.436757 | 7.2:+22141680 | None:intergenic |
| TGGCTAGAGATCCTGAAGAT+AGG | 0.437357 | 7.2:-22143492 | MS.gene41728:CDS |
| GCAGCACTGGACCTCAGTTC+CGG | 0.448145 | 7.2:-22142149 | MS.gene41728:intron |
| AGGTACCTGAGTAGTGGATT+GGG | 0.448889 | 7.2:+22145251 | None:intergenic |
| TTATATTCAGGTACCTGAAA+AGG | 0.458927 | 7.2:-22143271 | MS.gene41728:intron |
| CTGTACTTTGCAGGACTTAG+CGG | 0.469481 | 7.2:-22143539 | MS.gene41728:intron |
| AAGTATGACGGTTATCCATC+AGG | 0.473161 | 7.2:-22143945 | MS.gene41728:CDS |
| CTCGTAATGAAGGTTGACTT+TGG | 0.474484 | 7.2:-22143114 | MS.gene41728:intron |
| GATTAATACCGCTACTGGCT+TGG | 0.477699 | 7.2:+22142306 | None:intergenic |
| AAAGTTACCCAAAACGCATT+GGG | 0.484421 | 7.2:+22143210 | None:intergenic |
| TTTCTATCTTCTGCAGGTCG+AGG | 0.484803 | 7.2:+22141686 | None:intergenic |
| GAGGTACCTGAGTAGTGGAT+TGG | 0.486138 | 7.2:+22145250 | None:intergenic |
| CGCCAAATATGCAGCTCGTA+TGG | 0.487531 | 7.2:+22143239 | None:intergenic |
| TTAGAGATTAATACCGCTAC+TGG | 0.492574 | 7.2:+22142301 | None:intergenic |
| CTAAAGCGATTGTGCAGCAC+TGG | 0.493445 | 7.2:-22142162 | MS.gene41728:CDS |
| TTGGTTCAATGCGTACAAAT+CGG | 0.494738 | 7.2:+22143085 | None:intergenic |
| CGACTTGGCAGTTCATTCAA+AGG | 0.496656 | 7.2:-22143868 | MS.gene41728:intron |
| TTCTATCTTCTGCAGGTCGA+GGG | 0.497692 | 7.2:+22141687 | None:intergenic |
| GACTTTGCATGTGATGCAAA+TGG | 0.502893 | 7.2:-22143912 | MS.gene41728:CDS |
| ACCAAATCAGTCCTATCTTC+AGG | 0.507307 | 7.2:+22143481 | None:intergenic |
| AAAAGTTACCCAAAACGCAT+TGG | 0.512742 | 7.2:+22143209 | None:intergenic |
| AAAGTTGTACGATTTGTGTC+AGG | 0.512754 | 7.2:-22143063 | MS.gene41728:CDS |
| AACAGAAACCTTCGAGAATG+TGG | 0.529578 | 7.2:+22144502 | None:intergenic |
| GTATCAATCAACTTGAGGCT+TGG | 0.543974 | 7.2:+22141518 | None:intergenic |
| TCTTCTGCAGGTCGAGGGAA+AGG | 0.546658 | 7.2:+22141692 | None:intergenic |
| TAGATGTATCAATCAACTTG+AGG | 0.555292 | 7.2:+22141513 | None:intergenic |
| ATAATAGATTTGGATCGTCT+AGG | 0.558053 | 7.2:-22142019 | MS.gene41728:CDS |
| GGTACCTGAAAAGGATAAAG+AGG | 0.559008 | 7.2:-22143262 | MS.gene41728:CDS |
| TGGCTTGGAAAACTGAGCAA+TGG | 0.563411 | 7.2:+22142321 | None:intergenic |
| TTCTTCCCAATCCACTACTC+AGG | 0.566362 | 7.2:-22145256 | MS.gene41728:intron |
| GTTCGAATTTCTTCAACTGG+TGG | 0.572856 | 7.2:+22144557 | None:intergenic |
| GACGCTCTCCACATTCTCGA+AGG | 0.577675 | 7.2:-22144510 | MS.gene41728:intron |
| TCCCACGTAGACTACGATCA+AGG | 0.587187 | 7.2:+22144531 | None:intergenic |
| AAATAGAGGTACCTGAGTAG+TGG | 0.589705 | 7.2:+22145245 | None:intergenic |
| CAGGTCGAGGGAAAGGCACA+CGG | 0.592459 | 7.2:+22141699 | None:intergenic |
| TATATTAGCAGTGAGCGACT+TGG | 0.593728 | 7.2:-22143883 | MS.gene41728:CDS |
| AAGTCAACCATAGATCCTGA+TGG | 0.598237 | 7.2:+22143930 | None:intergenic |
| ACAGCTTTGTTAGGATCAGG+AGG | 0.602593 | 7.2:-22143033 | MS.gene41728:intron |
| GTCCTTGATCGTAGTCTACG+TGG | 0.607414 | 7.2:-22144533 | MS.gene41728:CDS |
| TTTGACACGCAGAAGTATGA+CGG | 0.611261 | 7.2:-22143957 | MS.gene41728:intron |
| TCCTTGATCGTAGTCTACGT+GGG | 0.641535 | 7.2:-22144532 | MS.gene41728:CDS |
| AAGGGGACATACCGGAACTG+AGG | 0.652484 | 7.2:+22142138 | None:intergenic |
| TCCTGATCCTAACAAAGCTG+TGG | 0.652822 | 7.2:+22143035 | None:intergenic |
| TCGCACATGAACAAAGATCA+CGG | 0.675086 | 7.2:-22142193 | MS.gene41728:CDS |
| GATTTGGTGATCACTATCCA+CGG | 0.676849 | 7.2:-22143466 | MS.gene41728:CDS |
| GCTTGGAAAACTGAGCAATG+GGG | 0.731088 | 7.2:+22142323 | None:intergenic |
| TTACAAAGATAGCGTCACCG+TGG | 0.762471 | 7.2:+22143449 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAACTGTAAATTATTA+TGG | - | chr7.2:22142430-22142449 | MS.gene41728:intron | 10.0% |
| !! | ATTTGATAAATAATAGTAAA+AGG | + | chr7.2:22143425-22143444 | None:intergenic | 10.0% |
| !! | CTATTGAATAATAATTAATT+GGG | - | chr7.2:22141604-22141623 | MS.gene41728:intron | 10.0% |
| !! | TATATTAAAAGAGAAAATTT+GGG | + | chr7.2:22144557-22144576 | None:intergenic | 10.0% |
| !! | TTATATTAAAAGAGAAAATT+TGG | + | chr7.2:22144558-22144577 | None:intergenic | 10.0% |
| !! | AAGAAATAATGTATAACTAA+TGG | + | chr7.2:22143387-22143406 | None:intergenic | 15.0% |
| !! | AATATTATCATGTAAACATA+GGG | - | chr7.2:22143902-22143921 | MS.gene41728:CDS | 15.0% |
| !! | ACTATTATTTATCAAATGAT+TGG | - | chr7.2:22143428-22143447 | MS.gene41728:intron | 15.0% |
| !! | CCAATTAATTATTATTCAAT+AGG | + | chr7.2:22141606-22141625 | None:intergenic | 15.0% |
| !! | CCTATTGAATAATAATTAAT+TGG | - | chr7.2:22141603-22141622 | MS.gene41728:intron | 15.0% |
| !! | TGCATAAAAAAGAATATATA+AGG | - | chr7.2:22144217-22144236 | MS.gene41728:intron | 15.0% |
| !!! | TATTTATTGCTTTTCTTTTA+GGG | - | chr7.2:22145211-22145230 | MS.gene41728:intron | 15.0% |
| !!! | TGAAATTTTGTTTTAGTAAT+TGG | - | chr7.2:22142768-22142787 | MS.gene41728:intron | 15.0% |
| !!! | TTTTAGTTAAGTTTTGATTT+TGG | + | chr7.2:22144052-22144071 | None:intergenic | 15.0% |
| !!! | TTTTTAACAATAAACTTTGA+GGG | + | chr7.2:22142975-22142994 | None:intergenic | 15.0% |
| !!! | TTTTTTAACAATAAACTTTG+AGG | + | chr7.2:22142976-22142995 | None:intergenic | 15.0% |
| !! | AAAAAAAAACAGCATATTGT+AGG | + | chr7.2:22145164-22145183 | None:intergenic | 20.0% |
| !! | AATAGGTTCAAAGAAAAAAA+GGG | + | chr7.2:22141589-22141608 | None:intergenic | 20.0% |
| !! | AATTGAATGTGTATAATTTC+AGG | - | chr7.2:22142155-22142174 | MS.gene41728:CDS | 20.0% |
| !! | AATTTGTGAACTTGTATAAA+TGG | - | chr7.2:22143052-22143071 | MS.gene41728:CDS | 20.0% |
| !! | ATAATAGAATCATTATACGA+AGG | - | chr7.2:22143467-22143486 | MS.gene41728:CDS | 20.0% |
| !! | ATACACATGAAATTAACTTA+TGG | + | chr7.2:22144348-22144367 | None:intergenic | 20.0% |
| !! | CAATATTATCATGTAAACAT+AGG | - | chr7.2:22143901-22143920 | MS.gene41728:CDS | 20.0% |
| !! | TAATAGAATCATTATACGAA+GGG | - | chr7.2:22143468-22143487 | MS.gene41728:CDS | 20.0% |
| !! | TAATTAATTAATGTGATTCG+TGG | - | chr7.2:22141717-22141736 | MS.gene41728:CDS | 20.0% |
| !! | TTTAAAAATCACCTACAAAT+TGG | - | chr7.2:22144897-22144916 | MS.gene41728:intron | 20.0% |
| !!! | AAGATTGATTTATGTTAATG+GGG | - | chr7.2:22142178-22142197 | MS.gene41728:CDS | 20.0% |
| !!! | ATAATCATTTTTTTTTAGGC+TGG | - | chr7.2:22145042-22145061 | MS.gene41728:intron | 20.0% |
| !!! | ATTTTATTCCACTCATAAAA+AGG | + | chr7.2:22143880-22143899 | None:intergenic | 20.0% |
| !!! | CTATTTATTGCTTTTCTTTT+AGG | - | chr7.2:22145210-22145229 | MS.gene41728:intron | 20.0% |
| !!! | GAAGATTGATTTATGTTAAT+GGG | - | chr7.2:22142177-22142196 | MS.gene41728:CDS | 20.0% |
| !!! | TTTTATTCCACTCATAAAAA+GGG | + | chr7.2:22143879-22143898 | None:intergenic | 20.0% |
| ! | AAATAAAAGACAAGATGAGA+AGG | + | chr7.2:22142812-22142831 | None:intergenic | 25.0% |
| ! | AAATATCTTTCCATTACTTC+AGG | - | chr7.2:22144299-22144318 | MS.gene41728:intron | 25.0% |
| ! | AATAGAATCATTATACGAAG+GGG | - | chr7.2:22143469-22143488 | MS.gene41728:CDS | 25.0% |
| ! | ACTTCTACAAAAATCAATGA+AGG | + | chr7.2:22141952-22141971 | None:intergenic | 25.0% |
| ! | ATAGTCCTGAAATTATATTC+AGG | - | chr7.2:22143505-22143524 | MS.gene41728:CDS | 25.0% |
| ! | ATGTAAACTTCACATAAGAT+GGG | + | chr7.2:22142361-22142380 | None:intergenic | 25.0% |
| ! | ATTAAAAGAGAAAATTTGGG+TGG | + | chr7.2:22144554-22144573 | None:intergenic | 25.0% |
| ! | ATTAACTTATGGTTCATAGA+TGG | + | chr7.2:22144337-22144356 | None:intergenic | 25.0% |
| ! | ATTATAACTGTTAAGATGAC+CGG | + | chr7.2:22143163-22143182 | None:intergenic | 25.0% |
| ! | ATTTCAGAAAAGTTCATGTT+AGG | + | chr7.2:22144009-22144028 | None:intergenic | 25.0% |
| ! | CAATAGGTTCAAAGAAAAAA+AGG | + | chr7.2:22141590-22141609 | None:intergenic | 25.0% |
| ! | CAGTGAAGATTTCAATTTAA+TGG | + | chr7.2:22142723-22142742 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAATTTGT+AGG | + | chr7.2:22144911-22144930 | None:intergenic | 25.0% |
| ! | GTATATAGTATGATCAAGAA+AGG | - | chr7.2:22144685-22144704 | MS.gene41728:intron | 25.0% |
| ! | TAAGTAAAAATACTGCCTAA+AGG | + | chr7.2:22144865-22144884 | None:intergenic | 25.0% |
| ! | TCATACTATATACTGTACAA+CGG | + | chr7.2:22144678-22144697 | None:intergenic | 25.0% |
| !! | AAGATTAGATTTGACTTCAT+CGG | - | chr7.2:22143016-22143035 | MS.gene41728:intron | 25.0% |
| !! | GGAAGATTGATTTATGTTAA+TGG | - | chr7.2:22142176-22142195 | MS.gene41728:CDS | 25.0% |
| !! | TTTAGTTGTTGTTGTTCATA+GGG | + | chr7.2:22142651-22142670 | None:intergenic | 25.0% |
| !!! | GCAATCTTTTAATTTGTTTG+TGG | + | chr7.2:22143206-22143225 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAACATCACCAG+AGG | + | chr7.2:22141762-22141781 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGTTGTTGTTCAT+AGG | + | chr7.2:22142652-22142671 | None:intergenic | 25.0% |
| AAAAATACTGCCTAAAGGTA+TGG | + | chr7.2:22144860-22144879 | None:intergenic | 30.0% | |
| AAATGAACTACTCGTAATGA+AGG | - | chr7.2:22143664-22143683 | MS.gene41728:intron | 30.0% | |
| AAGGGAAATGTTTCATACTA+TGG | + | chr7.2:22143861-22143880 | None:intergenic | 30.0% | |
| AGAAAAGTTCATGTTAGGAA+AGG | + | chr7.2:22144004-22144023 | None:intergenic | 30.0% | |
| AGCTATACAAATCAGTGTAA+GGG | + | chr7.2:22142319-22142338 | None:intergenic | 30.0% | |
| AGGTACCTGAATATAATTTC+AGG | + | chr7.2:22143513-22143532 | None:intergenic | 30.0% | |
| AGTTTATTTGCCATACCTTT+AGG | - | chr7.2:22144847-22144866 | MS.gene41728:intron | 30.0% | |
| ATAATAGATTTGGATCGTCT+AGG | - | chr7.2:22144769-22144788 | MS.gene41728:intron | 30.0% | |
| ATCAAGAAATCAACAGCTTT+AGG | + | chr7.2:22144094-22144113 | None:intergenic | 30.0% | |
| CATACTATATACTGTACAAC+GGG | + | chr7.2:22144677-22144696 | None:intergenic | 30.0% | |
| CATGTAAACTTCACATAAGA+TGG | + | chr7.2:22142362-22142381 | None:intergenic | 30.0% | |
| CTAAATTGACAGAAGCTAAT+GGG | + | chr7.2:22141991-22142010 | None:intergenic | 30.0% | |
| CTTTGAACATTACAAATGCT+GGG | - | chr7.2:22142525-22142544 | MS.gene41728:intron | 30.0% | |
| CTTTGCTGACATAATAGATT+TGG | - | chr7.2:22144759-22144778 | MS.gene41728:intron | 30.0% | |
| TCAAGAAATCAACAGCTTTA+GGG | + | chr7.2:22144093-22144112 | None:intergenic | 30.0% | |
| TCAATTAATTCAAGCTCATC+AGG | - | chr7.2:22141796-22141815 | MS.gene41728:intron | 30.0% | |
| TCTTTGAACATTACAAATGC+TGG | - | chr7.2:22142524-22142543 | MS.gene41728:intron | 30.0% | |
| TGTAAACTTCACATAAGATG+GGG | + | chr7.2:22142360-22142379 | None:intergenic | 30.0% | |
| TTATAACTGTTAAGATGACC+GGG | + | chr7.2:22143162-22143181 | None:intergenic | 30.0% | |
| TTATATTCAGGTACCTGAAA+AGG | - | chr7.2:22143517-22143536 | MS.gene41728:CDS | 30.0% | |
| TTATGTTAATGGGGTTATTG+TGG | - | chr7.2:22142187-22142206 | MS.gene41728:CDS | 30.0% | |
| ! | AACATTTCCCTTTTTATGAG+TGG | - | chr7.2:22143869-22143888 | MS.gene41728:CDS | 30.0% |
| ! | CAATTTTAAACTACCAGCAA+GGG | + | chr7.2:22142140-22142159 | None:intergenic | 30.0% |
| ! | CATTATAGTTGATACCTTGA+AGG | - | chr7.2:22143932-22143951 | MS.gene41728:CDS | 30.0% |
| ! | TATTGTTTTCTGTACTTTGC+AGG | - | chr7.2:22143240-22143259 | MS.gene41728:CDS | 30.0% |
| ! | TCAATTTTAAACTACCAGCA+AGG | + | chr7.2:22142141-22142160 | None:intergenic | 30.0% |
| ! | TGTAAATTATTATGGTGCCA+TGG | - | chr7.2:22142438-22142457 | MS.gene41728:intron | 30.0% |
| !! | GTTAATTTGCTGTTAATGCT+GGG | - | chr7.2:22143803-22143822 | MS.gene41728:intron | 30.0% |
| !! | TGAAAACTGTACTTGTTATC+TGG | - | chr7.2:22144181-22144200 | MS.gene41728:intron | 30.0% |
| !!! | TGGGGATATTGAAGTTTTTT+TGG | - | chr7.2:22142569-22142588 | MS.gene41728:intron | 30.0% |
| !!! | TTTTTTTAGGCTGGTTATCA+GGG | - | chr7.2:22145051-22145070 | MS.gene41728:intron | 30.0% |
| !!! | TTTTTTTTAGGCTGGTTATC+AGG | - | chr7.2:22145050-22145069 | MS.gene41728:intron | 30.0% |
| AAAAGTTACCCAAAACGCAT+TGG | + | chr7.2:22143582-22143601 | None:intergenic | 35.0% | |
| AAAGTTACCCAAAACGCATT+GGG | + | chr7.2:22143581-22143600 | None:intergenic | 35.0% | |
| AAAGTTGTACGATTTGTGTC+AGG | - | chr7.2:22143725-22143744 | MS.gene41728:intron | 35.0% | |
| AATATGGCTGTTAACTTTCC+TGG | - | chr7.2:22142465-22142484 | MS.gene41728:intron | 35.0% | |
| ACAGTTCGAATTTCTTCAAC+TGG | + | chr7.2:22142237-22142256 | None:intergenic | 35.0% | |
| AGAGAAGAGTGAAGAAATAG+AGG | + | chr7.2:22141560-22141579 | None:intergenic | 35.0% | |
| ATACAAATCAGTGTAAGGGT+AGG | + | chr7.2:22142315-22142334 | None:intergenic | 35.0% | |
| ATTAACCAACAAGAGTAGTG+AGG | + | chr7.2:22143789-22143808 | None:intergenic | 35.0% | |
| CAGAGAGGTGAATTACAAAA+TGG | + | chr7.2:22141831-22141850 | None:intergenic | 35.0% | |
| CAGCTATACAAATCAGTGTA+AGG | + | chr7.2:22142320-22142339 | None:intergenic | 35.0% | |
| CATGCAGTATATGATCAGAA+AGG | + | chr7.2:22142750-22142769 | None:intergenic | 35.0% | |
| CCTAAATTGACAGAAGCTAA+TGG | + | chr7.2:22141992-22142011 | None:intergenic | 35.0% | |
| TAAAAGACAAGATGAGAAGG+AGG | + | chr7.2:22142809-22142828 | None:intergenic | 35.0% | |
| TCGTCTAGGTTTCAATGTTA+AGG | - | chr7.2:22144783-22144802 | MS.gene41728:intron | 35.0% | |
| TCTTACTTTCTATCTTCTGC+AGG | + | chr7.2:22145111-22145130 | None:intergenic | 35.0% | |
| TGATTCGTGGTTTATGAATC+AGG | - | chr7.2:22141730-22141749 | MS.gene41728:CDS | 35.0% | |
| TGGGATTGATCAAATAAGAG+AGG | - | chr7.2:22142544-22142563 | MS.gene41728:intron | 35.0% | |
| TGTTAATGCTGGGATATGTT+TGG | - | chr7.2:22143813-22143832 | MS.gene41728:intron | 35.0% | |
| TTAGAGATTAATACCGCTAC+TGG | + | chr7.2:22144490-22144509 | None:intergenic | 35.0% | |
| TTCACATAAGATGGGGAAAA+AGG | + | chr7.2:22142353-22142372 | None:intergenic | 35.0% | |
| TTGATCAAATAAGAGAGGCA+TGG | - | chr7.2:22142549-22142568 | MS.gene41728:intron | 35.0% | |
| TTGGTTCAATGCGTACAAAT+CGG | + | chr7.2:22143706-22143725 | None:intergenic | 35.0% | |
| ! | AAAACAAACTCTAGCCTTCA+AGG | + | chr7.2:22143949-22143968 | None:intergenic | 35.0% |
| ! | CATTTTGTAATTCACCTCTC+TGG | - | chr7.2:22141829-22141848 | MS.gene41728:intron | 35.0% |
| ! | CCATTAGCTTCTGTCAATTT+AGG | - | chr7.2:22141989-22142008 | MS.gene41728:intron | 35.0% |
| ! | GACACAAATCGTACAACTTT+TGG | + | chr7.2:22143725-22143744 | None:intergenic | 35.0% |
| ! | GATTTGACTTCATCGGAAAT+AGG | - | chr7.2:22143023-22143042 | MS.gene41728:intron | 35.0% |
| ! | TCCTAAATGTTCAGTGCTTT+TGG | - | chr7.2:22143276-22143295 | MS.gene41728:intron | 35.0% |
| ! | TGATCAAATAAGAGAGGCAT+GGG | - | chr7.2:22142550-22142569 | MS.gene41728:intron | 35.0% |
| ! | TTGTTGTTGTTCATAGGGAA+GGG | + | chr7.2:22142646-22142665 | None:intergenic | 35.0% |
| !! | AAATTATTATGGTGCCATGG+TGG | - | chr7.2:22142441-22142460 | MS.gene41728:intron | 35.0% |
| !! | ACTTATCTAGAAGCACTTCT+GGG | - | chr7.2:22141856-22141875 | MS.gene41728:intron | 35.0% |
| !! | GGTTAATTTGCTGTTAATGC+TGG | - | chr7.2:22143802-22143821 | MS.gene41728:intron | 35.0% |
| !! | TATTGACTTAGGCTTGTCAA+AGG | - | chr7.2:22143090-22143109 | MS.gene41728:CDS | 35.0% |
| AACAGAAACCTTCGAGAATG+TGG | + | chr7.2:22142289-22142308 | None:intergenic | 40.0% | |
| AAGTATGACGGTTATCCATC+AGG | - | chr7.2:22142843-22142862 | MS.gene41728:intron | 40.0% | |
| AAGTCAACCATAGATCCTGA+TGG | + | chr7.2:22142861-22142880 | None:intergenic | 40.0% | |
| AAGTCGCTCACTGCTAATAT+AGG | + | chr7.2:22142906-22142925 | None:intergenic | 40.0% | |
| AATGCTGGGATATGTTTGGA+AGG | - | chr7.2:22143817-22143836 | MS.gene41728:intron | 40.0% | |
| ACCAAATCAGTCCTATCTTC+AGG | + | chr7.2:22143310-22143329 | None:intergenic | 40.0% | |
| ATATACTGTACAACGGGCAA+GGG | + | chr7.2:22144671-22144690 | None:intergenic | 40.0% | |
| ATGCTGGGATATGTTTGGAA+GGG | - | chr7.2:22143818-22143837 | MS.gene41728:intron | 40.0% | |
| CCTAAGTCAATACTGTGTGA+TGG | + | chr7.2:22143082-22143101 | None:intergenic | 40.0% | |
| CTTGCTCATTCCTGAAGTAA+TGG | + | chr7.2:22144312-22144331 | None:intergenic | 40.0% | |
| GACTTTGCATGTGATGCAAA+TGG | - | chr7.2:22142876-22142895 | MS.gene41728:intron | 40.0% | |
| GGTACCTGAAAAGGATAAAG+AGG | - | chr7.2:22143526-22143545 | MS.gene41728:CDS | 40.0% | |
| GTTAACCTCACTACTCTTGT+TGG | - | chr7.2:22143781-22143800 | MS.gene41728:intron | 40.0% | |
| GTTCGAATTTCTTCAACTGG+TGG | + | chr7.2:22142234-22142253 | None:intergenic | 40.0% | |
| TAGAAGCTAAAATCCCTTGC+TGG | - | chr7.2:22142124-22142143 | MS.gene41728:intron | 40.0% | |
| TATATACTGTACAACGGGCA+AGG | + | chr7.2:22144672-22144691 | None:intergenic | 40.0% | |
| TATATTAGCAGTGAGCGACT+TGG | - | chr7.2:22142905-22142924 | MS.gene41728:intron | 40.0% | |
| TCCTGAAGATAGGACTGATT+TGG | - | chr7.2:22143306-22143325 | MS.gene41728:intron | 40.0% | |
| TCGCACATGAACAAAGATCA+CGG | - | chr7.2:22144595-22144614 | MS.gene41728:intron | 40.0% | |
| TCTTCGACTTCAGAGTTTAC+CGG | - | chr7.2:22144415-22144434 | MS.gene41728:intron | 40.0% | |
| TGACTGAATTGATCATCTGC+AGG | - | chr7.2:22144732-22144751 | MS.gene41728:intron | 40.0% | |
| ! | AGTCAATACTGTGTGATGGA+TGG | + | chr7.2:22143078-22143097 | None:intergenic | 40.0% |
| ! | ATGAATCAGGTTGTTTCCTC+TGG | - | chr7.2:22141743-22141762 | MS.gene41728:intron | 40.0% |
| ! | ATGGCCTCTTTATCCTTTTC+AGG | + | chr7.2:22143533-22143552 | None:intergenic | 40.0% |
| ! | CTCGTAATGAAGGTTGACTT+TGG | - | chr7.2:22143674-22143693 | MS.gene41728:intron | 40.0% |
| ! | GATCAAATAAGAGAGGCATG+GGG | - | chr7.2:22142551-22142570 | MS.gene41728:intron | 40.0% |
| ! | GTTGTTGTTGTTCATAGGGA+AGG | + | chr7.2:22142647-22142666 | None:intergenic | 40.0% |
| ! | TGACTTTTGTTCATACCCCA+AGG | - | chr7.2:22142609-22142628 | MS.gene41728:intron | 40.0% |
| ! | TTTGACACGCAGAAGTATGA+CGG | - | chr7.2:22142831-22142850 | MS.gene41728:intron | 40.0% |
| !! | AAATAGAGGTACCTGAGTAG+TGG | + | chr7.2:22141546-22141565 | None:intergenic | 40.0% |
| !! | AAGGGTGTTTACAGTTCCTT+GGG | + | chr7.2:22142628-22142647 | None:intergenic | 40.0% |
| !! | AGCTGTTGATTTCTTGATGC+TGG | - | chr7.2:22144096-22144115 | MS.gene41728:intron | 40.0% |
| !! | CACTTATCTAGAAGCACTTC+TGG | - | chr7.2:22141855-22141874 | MS.gene41728:intron | 40.0% |
| !! | CCATCACACAGTATTGACTT+AGG | - | chr7.2:22143079-22143098 | MS.gene41728:CDS | 40.0% |
| !! | GATTTGGTGATCACTATCCA+CGG | - | chr7.2:22143322-22143341 | MS.gene41728:intron | 40.0% |
| !! | GCCAAAAGCACTGAACATTT+AGG | + | chr7.2:22143280-22143299 | None:intergenic | 40.0% |
| !! | TGCTGATTTGTACTCATCTC+CGG | + | chr7.2:22144437-22144456 | None:intergenic | 40.0% |
| !!! | GAAGGCTAGAGTTTGTTTTG+CGG | - | chr7.2:22143950-22143969 | MS.gene41728:intron | 40.0% |
| CGGTTATCCATCAGGATCTA+TGG | - | chr7.2:22142851-22142870 | MS.gene41728:intron | 45.0% | |
| CTAGATAAGTGCTTCCAGAG+AGG | + | chr7.2:22141846-22141865 | None:intergenic | 45.0% | |
| CTGAATTGATCATCTGCAGG+TGG | - | chr7.2:22144735-22144754 | MS.gene41728:intron | 45.0% | |
| CTGTACTTTGCAGGACTTAG+CGG | - | chr7.2:22143249-22143268 | MS.gene41728:CDS | 45.0% | |
| GCTTGGAAAACTGAGCAATG+GGG | + | chr7.2:22144468-22144487 | None:intergenic | 45.0% | |
| GGCTTGGAAAACTGAGCAAT+GGG | + | chr7.2:22144469-22144488 | None:intergenic | 45.0% | |
| GTTAATGGGGTTATTGTGGC+AGG | - | chr7.2:22142191-22142210 | MS.gene41728:CDS | 45.0% | |
| TAACAGCCATATTGCCACCA+TGG | + | chr7.2:22142458-22142477 | None:intergenic | 45.0% | |
| TATACTGTACAACGGGCAAG+GGG | + | chr7.2:22144670-22144689 | None:intergenic | 45.0% | |
| TCCTGATCCTAACAAAGCTG+TGG | + | chr7.2:22143756-22143775 | None:intergenic | 45.0% | |
| TCCTTGATCGTAGTCTACGT+GGG | - | chr7.2:22142256-22142275 | MS.gene41728:intron | 45.0% | |
| TGGCTAGAGATCCTGAAGAT+AGG | - | chr7.2:22143296-22143315 | MS.gene41728:intron | 45.0% | |
| TTACAAAGATAGCGTCACCG+TGG | + | chr7.2:22143342-22143361 | None:intergenic | 45.0% | |
| TTCTATCTTCTGCAGGTCGA+GGG | + | chr7.2:22145104-22145123 | None:intergenic | 45.0% | |
| TTCTTCCCAATCCACTACTC+AGG | - | chr7.2:22141532-22141551 | MS.gene41728:CDS | 45.0% | |
| TTGATTTCTTGATGCTGGCG+TGG | - | chr7.2:22144101-22144120 | MS.gene41728:intron | 45.0% | |
| TTTCTATCTTCTGCAGGTCG+AGG | + | chr7.2:22145105-22145124 | None:intergenic | 45.0% | |
| ! | AGGGTGTTTACAGTTCCTTG+GGG | + | chr7.2:22142627-22142646 | None:intergenic | 45.0% |
| ! | CGACTTGGCAGTTCATTCAA+AGG | - | chr7.2:22142920-22142939 | MS.gene41728:intron | 45.0% |
| ! | GAGACATCCCAATGCGTTTT+GGG | - | chr7.2:22143571-22143590 | MS.gene41728:intron | 45.0% |
| ! | GATTAATACCGCTACTGGCT+TGG | + | chr7.2:22144485-22144504 | None:intergenic | 45.0% |
| ! | TCAGTTTTCCAAGCCAGTAG+CGG | - | chr7.2:22144474-22144493 | MS.gene41728:intron | 45.0% |
| ! | TGGCTTGGAAAACTGAGCAA+TGG | + | chr7.2:22144470-22144489 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTAGGATCAGG+AGG | - | chr7.2:22143755-22143774 | MS.gene41728:intron | 45.0% |
| !! | AGGTACCTGAGTAGTGGATT+GGG | + | chr7.2:22141540-22141559 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTTACAGTTCCT+TGG | + | chr7.2:22142629-22142648 | None:intergenic | 45.0% |
| !!! | TAAAATAATCATTTTTTTTT+AGG | - | chr7.2:22145038-22145057 | MS.gene41728:CDS | 5.0% |
| !!! | TCAATTAAAATATTTTTTAT+TGG | - | chr7.2:22144267-22144286 | MS.gene41728:intron | 5.0% |
| AGTGAAAGCTACTCCAGACC+AGG | + | chr7.2:22142486-22142505 | None:intergenic | 50.0% | |
| CGCCAAATATGCAGCTCGTA+TGG | + | chr7.2:22143552-22143571 | None:intergenic | 50.0% | |
| CTAAAGCGATTGTGCAGCAC+TGG | - | chr7.2:22144626-22144645 | MS.gene41728:intron | 50.0% | |
| CTGTGTGGATGCTGTAAAGC+AGG | - | chr7.2:22143973-22143992 | MS.gene41728:intron | 50.0% | |
| GGCCATACGAGCTGCATATT+TGG | - | chr7.2:22143547-22143566 | MS.gene41728:intron | 50.0% | |
| GGCTGTTAACTTTCCTGGTC+TGG | - | chr7.2:22142470-22142489 | MS.gene41728:intron | 50.0% | |
| GTCCTTGATCGTAGTCTACG+TGG | - | chr7.2:22142255-22142274 | MS.gene41728:intron | 50.0% | |
| TCATGTCTTCAACCTGCTCC+CGG | - | chr7.2:22143141-22143160 | MS.gene41728:intron | 50.0% | |
| TCCCACGTAGACTACGATCA+AGG | + | chr7.2:22142260-22142279 | None:intergenic | 50.0% | |
| ! | CGAGACATCCCAATGCGTTT+TGG | - | chr7.2:22143570-22143589 | MS.gene41728:intron | 50.0% |
| ! | GGTCTGGAGTAGCTTTCACT+AGG | - | chr7.2:22142486-22142505 | MS.gene41728:intron | 50.0% |
| !! | ATGGTGCCATGGTGGCAATA+TGG | - | chr7.2:22142449-22142468 | MS.gene41728:intron | 50.0% |
| !! | GAGGTACCTGAGTAGTGGAT+TGG | + | chr7.2:22141541-22141560 | None:intergenic | 50.0% |
| !! | GCCACAGCTTTGTTAGGATC+AGG | - | chr7.2:22143752-22143771 | MS.gene41728:intron | 50.0% |
| !! | GGTGTTGCCACAGCTTTGTT+AGG | - | chr7.2:22143746-22143765 | MS.gene41728:intron | 50.0% |
| !!! | GAGTTTGTTTTGCGGCTGTG+TGG | - | chr7.2:22143958-22143977 | MS.gene41728:intron | 50.0% |
| AAGGGGACATACCGGAACTG+AGG | + | chr7.2:22144653-22144672 | None:intergenic | 55.0% | |
| CAACTTGAGGCTTGGCAGCT+TGG | + | chr7.2:22145265-22145284 | None:intergenic | 55.0% | |
| CTGTTAAGATGACCGGGAGC+AGG | + | chr7.2:22143156-22143175 | None:intergenic | 55.0% | |
| GACGCTCTCCACATTCTCGA+AGG | - | chr7.2:22142278-22142297 | MS.gene41728:intron | 55.0% | |
| TCTTCTGCAGGTCGAGGGAA+AGG | + | chr7.2:22145099-22145118 | None:intergenic | 55.0% | |
| CAACGGGCAAGGGGACATAC+CGG | + | chr7.2:22144661-22144680 | None:intergenic | 60.0% | |
| ! | CAGGTCGAGGGAAAGGCACA+CGG | + | chr7.2:22145092-22145111 | None:intergenic | 60.0% |
| ! | GCAGCACTGGACCTCAGTTC+CGG | - | chr7.2:22144639-22144658 | MS.gene41728:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 22141521 | 22145289 | 22141521 | ID=MS.gene41728 |
| chr7.2 | mRNA | 22141521 | 22145289 | 22141521 | ID=MS.gene41728.t1;Parent=MS.gene41728 |
| chr7.2 | exon | 22145257 | 22145289 | 22145257 | ID=MS.gene41728.t1.exon1;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22145257 | 22145289 | 22145257 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22144993 | 22145058 | 22144993 | ID=MS.gene41728.t1.exon2;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22144993 | 22145058 | 22144993 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22144511 | 22144597 | 22144511 | ID=MS.gene41728.t1.exon3;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22144511 | 22144597 | 22144511 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22143869 | 22143967 | 22143869 | ID=MS.gene41728.t1.exon4;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22143869 | 22143967 | 22143869 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22143453 | 22143548 | 22143453 | ID=MS.gene41728.t1.exon5;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22143453 | 22143548 | 22143453 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22143218 | 22143283 | 22143218 | ID=MS.gene41728.t1.exon6;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22143218 | 22143283 | 22143218 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22143034 | 22143124 | 22143034 | ID=MS.gene41728.t1.exon7;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22143034 | 22143124 | 22143034 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22142315 | 22142382 | 22142315 | ID=MS.gene41728.t1.exon8;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22142315 | 22142382 | 22142315 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22142150 | 22142215 | 22142150 | ID=MS.gene41728.t1.exon9;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22142150 | 22142215 | 22142150 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22142006 | 22142056 | 22142006 | ID=MS.gene41728.t1.exon10;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22142006 | 22142056 | 22142006 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22141686 | 22141750 | 22141686 | ID=MS.gene41728.t1.exon11;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22141686 | 22141750 | 22141686 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| chr7.2 | exon | 22141521 | 22141578 | 22141521 | ID=MS.gene41728.t1.exon12;Parent=MS.gene41728.t1 |
| chr7.2 | CDS | 22141521 | 22141578 | 22141521 | ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1 |
| Gene Sequence |
| Protein sequence |
