AlfalfaGEDB | MS.gene41728

M. sativa cultivar XinJiangDaYe / MS.gene41728

KEGG: -
GO: GO:0003674 GO:0005488 GO:0048037
PFAM: PF10615.12 PF13883.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41728.t1	XP_013449504.1	97.5	279	7	0	3	281	50	328	1.10E-152	549.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41728.t1	Q9LU39	25.4	244	154	8	41	276	61	284	1.7e-10	68.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41728.t1	A0A072U1J2	97.5	279	7	0	3	281	50	328	7.6e-153	549.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050315	MS.gene41728	0.802221	6.22E-49	-1.69E-46
MS.gene050747	MS.gene41728	0.831033	2.10E-55	-1.69E-46
MS.gene050950	MS.gene41728	0.828831	7.22E-55	-1.69E-46
MS.gene051838	MS.gene41728	0.85747	1.60E-62	-1.69E-46
MS.gene052982	MS.gene41728	0.825939	3.57E-54	-1.69E-46
MS.gene053203	MS.gene41728	0.802866	4.58E-49	-1.69E-46
MS.gene053318	MS.gene41728	0.80854	2.95E-50	-1.69E-46
MS.gene054927	MS.gene41728	0.803499	3.39E-49	-1.69E-46
MS.gene055539	MS.gene41728	0.813549	2.42E-51	-1.69E-46
MS.gene055577	MS.gene41728	0.812087	5.06E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41728.t1	MTR_7g085670	97.491	279	7	0	3	281	50	328	0.0	563
MS.gene41728.t1	MTR_7g085670	97.740	177	4	0	3	179	50	226	8.87e-126	358
MS.gene41728.t1	MTR_4g007990	28.571	245	149	12	36	268	135	365	1.92e-17	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41728.t1	AT3G03890	76.357	258	61	0	20	277	62	319	3.59e-148	418
MS.gene41728.t1	AT3G03890	75.000	244	61	0	20	263	62	305	6.54e-138	391
MS.gene41728.t1	AT1G51560	27.626	257	136	12	36	268	141	371	1.10e-17	82.4
MS.gene41728.t1	AT3G21140	29.084	251	140	11	36	268	137	367	1.50e-17	82.0

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Find 66 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTACCCAAAACGCAT+TGG	0.512742	7.2:+22143209	None:intergenic
AAAGTTACCCAAAACGCATT+GGG	0.484421	7.2:+22143210	None:intergenic
AAAGTTGTACGATTTGTGTC+AGG	0.512754	7.2:-22143063	MS.gene41728:CDS
AAATAGAGGTACCTGAGTAG+TGG	0.589705	7.2:+22145245	None:intergenic
AACAGAAACCTTCGAGAATG+TGG	0.529578	7.2:+22144502	None:intergenic
AAGGGGACATACCGGAACTG+AGG	0.652484	7.2:+22142138	None:intergenic
AAGTATGACGGTTATCCATC+AGG	0.473161	7.2:-22143945	MS.gene41728:CDS
AAGTCAACCATAGATCCTGA+TGG	0.598237	7.2:+22143930	None:intergenic
AAGTCGCTCACTGCTAATAT+AGG	0.415949	7.2:+22143885	None:intergenic
ACAGCTTTGTTAGGATCAGG+AGG	0.602593	7.2:-22143033	MS.gene41728:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATACTGCCTAAAGGTA+TGG	+	chr7.2:22144860-22144879	None:intergenic	30.0%
AAATGAACTACTCGTAATGA+AGG	-	chr7.2:22143664-22143683	MS.gene41728:intron	30.0%
AAGGGAAATGTTTCATACTA+TGG	+	chr7.2:22143861-22143880	None:intergenic	30.0%
AGAAAAGTTCATGTTAGGAA+AGG	+	chr7.2:22144004-22144023	None:intergenic	30.0%
AGCTATACAAATCAGTGTAA+GGG	+	chr7.2:22142319-22142338	None:intergenic	30.0%
AGGTACCTGAATATAATTTC+AGG	+	chr7.2:22143513-22143532	None:intergenic	30.0%
AGTTTATTTGCCATACCTTT+AGG	-	chr7.2:22144847-22144866	MS.gene41728:intron	30.0%
ATAATAGATTTGGATCGTCT+AGG	-	chr7.2:22144769-22144788	MS.gene41728:intron	30.0%
ATCAAGAAATCAACAGCTTT+AGG	+	chr7.2:22144094-22144113	None:intergenic	30.0%
CATACTATATACTGTACAAC+GGG	+	chr7.2:22144677-22144696	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	22141521	22145289	22141521	ID=MS.gene41728
chr7.2	mRNA	22141521	22145289	22141521	ID=MS.gene41728.t1;Parent=MS.gene41728
chr7.2	exon	22145257	22145289	22145257	ID=MS.gene41728.t1.exon1;Parent=MS.gene41728.t1
chr7.2	CDS	22145257	22145289	22145257	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22144993	22145058	22144993	ID=MS.gene41728.t1.exon2;Parent=MS.gene41728.t1
chr7.2	CDS	22144993	22145058	22144993	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22144511	22144597	22144511	ID=MS.gene41728.t1.exon3;Parent=MS.gene41728.t1
chr7.2	CDS	22144511	22144597	22144511	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22143869	22143967	22143869	ID=MS.gene41728.t1.exon4;Parent=MS.gene41728.t1
chr7.2	CDS	22143869	22143967	22143869	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22143453	22143548	22143453	ID=MS.gene41728.t1.exon5;Parent=MS.gene41728.t1
chr7.2	CDS	22143453	22143548	22143453	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22143218	22143283	22143218	ID=MS.gene41728.t1.exon6;Parent=MS.gene41728.t1
chr7.2	CDS	22143218	22143283	22143218	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22143034	22143124	22143034	ID=MS.gene41728.t1.exon7;Parent=MS.gene41728.t1
chr7.2	CDS	22143034	22143124	22143034	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22142315	22142382	22142315	ID=MS.gene41728.t1.exon8;Parent=MS.gene41728.t1
chr7.2	CDS	22142315	22142382	22142315	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22142150	22142215	22142150	ID=MS.gene41728.t1.exon9;Parent=MS.gene41728.t1
chr7.2	CDS	22142150	22142215	22142150	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22142006	22142056	22142006	ID=MS.gene41728.t1.exon10;Parent=MS.gene41728.t1
chr7.2	CDS	22142006	22142056	22142006	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22141686	22141750	22141686	ID=MS.gene41728.t1.exon11;Parent=MS.gene41728.t1
chr7.2	CDS	22141686	22141750	22141686	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1
chr7.2	exon	22141521	22141578	22141521	ID=MS.gene41728.t1.exon12;Parent=MS.gene41728.t1
chr7.2	CDS	22141521	22141578	22141521	ID=cds.MS.gene41728.t1;Parent=MS.gene41728.t1

Gene Sequence

>MS.gene41728

ATGGCTTCTTCTTCTTCCCAATCCACTACTCAGGTACCTCTATTTCTTCACTCTTCTCTTTTTTACCCTTTTTTTCTTTGAACCTATTGAATAATAATTAATTGGGTCGCTTCAAAATTCGAAATTTACACATAATTACTGAATTTTATTACATATTTTGTATGTTTTCAATGATGATCATAGTTTATGAATTAATTAATTAATTAATGTGATTCGTGGTTTATGAATCAGGTTGTTTCCTCTGGTGATGTTAAAAATAAAAAAGATGATGTCTTTCAATTAATTCAAGCTCATCAGGTATTTTAAGCCATTTTGTAATTCACCTCTCTGGAAGCACTTATCTAGAAGCACTTCTGGGAAACAAATTATTAGATGAAATGAAGAATTAAAAGCTGAAAACTTCTAGTATATGTTTAATTGCAAGTCAACCTTCATTGATTTTTGTAGAAGTTCTCATATTTAAATTTCCCATTAGCTTCTGTCAATTTAGGAGCTGTATTTTCATGATCTCATCATTTAACATCTATGAATGTCTATATGTTCATAAACAAAATTATGCAAGCGAAAATTGAAACTTATTTTAGTTGTAAAACTCTAATAAACTAGAAGCTAAAATCCCTTGCTGGTAGTTTAAAATTGAATGTGTATAATTTCAGGAAGATTGATTTATGTTAATGGGGTTATTGTGGCAGGAAAAAGCTGCAAGACTTCCACCAGTTGAAGAAATTCGAACTGTCCTTGATCGTAGTCTACGTGGGACGCTCTCCACATTCTCGAAGGTTTCTGTTTGTCCTACCCTTACACTGATTTGTATAGCTGATTGCTTTTACCTTTTTCCCCATCTTATGTGAAGTTTACATGATTATTGTTAAGTGTAATTCATGAGATGCAATCATCTTTTTTGCTTTAATTTAAACTGTAAATTATTATGGTGCCATGGTGGCAATATGGCTGTTAACTTTCCTGGTCTGGAGTAGCTTTCACTAGGAAAAAGATGAAAACATCTTTGAACATTACAAATGCTGGGATTGATCAAATAAGAGAGGCATGGGGATATTGAAGTTTTTTTGGTTTGAAAGTTTAGTTGTTGACTTTTGTTCATACCCCAAGGAACTGTAAACACCCTTCCCTATGAACAACAACAACTAAAAACAAAATAGTAATAGTACTAATAATAGTAAAATTCATGCTTGACAGAGCCATTAAATTGAAATCTTCACTGACTGCCTTTCTGATCATATACTGCATGAAATTTTGTTTTAGTAATTGGCAGACAACTTGATTGCCTCCTTCTCATCTTGTCTTTTATTTTTGACACGCAGAAGTATGACGGTTATCCATCAGGATCTATGGTTGACTTTGCATGTGATGCAAATGGATGTCCTATATTAGCAGTGAGCGACTTGGCAGTTCATTCAAAGGTTTCTTTCTTTATTTTATTTTATTTTCTTCCCTCAAAGTTTATTGTTAAAAAATGATAAATATAAAAAACTCAAAGATTAGATTTGACTTCATCGGAAATAGGACGTCGAATTTGTGAACTTGTATAAATGGCCATCCATCACACAGTATTGACTTAGGCTTGTCAAAGGTCTCGAATTAAATTTCAAATCTTATTTTTCATGTCTTCAACCTGCTCCCGGTCATCTTAACAGTTATAATTCATGAGAACATCTTTTAGACCACAAACAAATTAAAAGATTGCTTCTATTGCTAGAGTATTGTTTTCTGTACTTTGCAGGACTTAGCGGCTAATCCTAAATGTTCAGTGCTTTTGGCTAGAGATCCTGAAGATAGGACTGATTTGGTGATCACTATCCACGGTGACGCTATCTTTGTAAGTTACAGTCATCTGTTCATTTTCCATTAGTTATACATTATTTCTTTTTGTGTTTTCATTTCCTTTTACTATTATTTATCAAATGATTGGATTACACAGTCATTAAATAATAGAATCATTATACGAAGGGGCAGAAGTTTAAATATAGTCCTGAAATTATATTCAGGTACCTGAAAAGGATAAAGAGGCCATACGAGCTGCATATTTGGCGAGACATCCCAATGCGTTTTGGGTAACTTTTGCTCATCATTCTTCTTTGAAACTTACTTTGTGACTTCTGCTTGTTCTAAAATTAACAACTATAAATGAACTACTCGTAATGAAGGTTGACTTTGGAGACTTCCGATTTGTACGCATTGAACCAAAAGTTGTACGATTTGTGTCAGGTGTTGCCACAGCTTTGTTAGGATCAGGAGGTTTGTTAACCTCACTACTCTTGTTGGTTAATTTGCTGTTAATGCTGGGATATGTTTGGAAGGGAAGAGACAGTTAACTTTCCATAGTATGAAACATTTCCCTTTTTATGAGTGGAATAAAATACAATATTATCATGTAAACATAGGGTTAGAAACATTATAGTTGATACCTTGAAGGCTAGAGTTTGTTTTGCGGCTGTGTGGATGCTGTAAAGCAGGACAAACCTTTCCTAACATGAACTTTTCTGAAATGAGCAAAGAGTGTATCAACGCCAAAATCAAAACTTAACTAAAATAATGAGATTAATTTTTGCCCTAAAGCTGTTGATTTCTTGATGCTGGCGTGGTGTGTTCTGCATCATATTGCATTATTAAAAACTGTCTTTTAAGTCAATTGCTTTGATTGAAAACTGTACTTGTTATCTGGTTTTAGAATAGCATGCATAAAAAAGAATATATAAGGAATTCTTGCATTTTAAAGAGAATTTTTTCAATTAAAATATTTTTTATTGGTGCACATCAAAATATCTTTCCATTACTTCAGGAATGAGCAAGTACCATCTATGAACCATAAGTTAATTTCATGTGTATTTTCTGTTTTATCTATTTGATACAAGTATATTTTGCTTACTTTTTTGTCTTCGACTTCAGAGTTTACCGGAGATGAGTACAAATCAGCAAAAGTTGACCCCATTGCTCAGTTTTCCAAGCCAGTAGCGGTATTAATCTCTAACTGATTTTCATATGTTGCATGTCTACAATGTATTTCTTAAACCACCCAAATTTTCTCTTTTAATATAAGTATTTTTATTTGACAGTCGCACATGAACAAAGATCACGGTGAAGATACTAAAGCGATTGTGCAGCACTGGACCTCAGTTCCGGTATGTCCCCTTGCCCGTTGTACAGTATATAGTATGATCAAGAAAGGCGACTCTTATTTCAACTGTTAAATTGACTGAATTGATCATCTGCAGGTGGACTTTGCTGACATAATAGATTTGGATCGTCTAGGTTTCAATGTTAAGGTATTGTTGTTCTTAGTTTTTCTAATATCATTTAGTTAAGCTAGTTTATTTGCCATACCTTTAGGCAGTATTTTTACTTATTTATTTATTTTTTTAAAAATCACCTACAAATTGGATAAAGAAATCTTCAATAACATCAGTCGAATAATATTTTCTACTTTGTTTGCAGTTATGCTCAATGTTCAATTTCTCTTTTACTATTTTTTCTGAGTTCTGAATGTGTACGTTTCATTTAAAATAATCATTTTTTTTTAGGCTGGTTATCAGGGAGATAAATTCAAGCTCCGTGTGCCTTTCCCTCGACCTGCAGAAGATAGAAAGTAAGACATCATATTTGATATAAGCTGTGTGTACGTCCTACAATATGCTGTTTTTTTTTAATAAAAAAATTATGCTGATAAATAACTATTTATTGCTTTTCTTTTAGGGATGTTAAGACTCTCATTGTTGAGATGCTCCAAGCTGCCAAGCCTCAAGTTGATTGA

Protein sequence

>MS.gene41728.t1

MASSSSQSTTQVVSSGDVKNKKDDVFQLIQAHQEKAARLPPVEEIRTVLDRSLRGTLSTFSKKYDGYPSGSMVDFACDANGCPILAVSDLAVHSKDLAANPKCSVLLARDPEDRTDLVITIHGDAIFVPEKDKEAIRAAYLARHPNAFWVDFGDFRFVRIEPKVVRFVSGVATALLGSGEFTGDEYKSAKVDPIAQFSKPVASHMNKDHGEDTKAIVQHWTSVPVDFADIIDLDRLGFNVKAGYQGDKFKLRVPFPRPAEDRKDVKTLIVEMLQAAKPQVD