Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41734.t1 | XP_003624631.1 | 94.6 | 258 | 8 | 3 | 1 | 258 | 1 | 252 | 4.20E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41734.t1 | A2Q5V9 | 94.6 | 258 | 8 | 3 | 1 | 258 | 1 | 252 | 3.0e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene41734 | 0.847831 | 9.02E-60 | -1.69E-46 |
| MS.gene050508 | MS.gene41734 | 0.852561 | 4.26E-61 | -1.69E-46 |
| MS.gene050605 | MS.gene41734 | 0.827813 | 1.27E-54 | -1.69E-46 |
| MS.gene050680 | MS.gene41734 | 0.837399 | 5.32E-57 | -1.69E-46 |
| MS.gene051122 | MS.gene41734 | 0.816278 | 6.00E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene41734 | 0.847302 | 1.26E-59 | -1.69E-46 |
| MS.gene051370 | MS.gene41734 | 0.809414 | 1.91E-50 | -1.69E-46 |
| MS.gene051926 | MS.gene41734 | -0.807245 | 5.55E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene41734 | 0.80735 | 5.28E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene41734 | 0.854937 | 8.82E-62 | -1.69E-46 |
| MS.gene053166 | MS.gene41734 | 0.809713 | 1.65E-50 | -1.69E-46 |
| MS.gene055225 | MS.gene41734 | 0.84841 | 6.24E-60 | -1.69E-46 |
| MS.gene055701 | MS.gene41734 | 0.852846 | 3.53E-61 | -1.69E-46 |
| MS.gene056506 | MS.gene41734 | 0.815413 | 9.36E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene41734 | -0.820748 | 5.82E-53 | -1.69E-46 |
| MS.gene059710 | MS.gene41734 | 0.855146 | 7.67E-62 | -1.69E-46 |
| MS.gene060246 | MS.gene41734 | 0.800013 | 1.76E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41734.t1 | MTR_7g085790 | 94.574 | 258 | 8 | 3 | 1 | 258 | 1 | 252 | 1.77e-180 | 496 |
| MS.gene41734.t1 | MTR_7g085790 | 79.845 | 258 | 7 | 3 | 1 | 258 | 1 | 213 | 1.26e-144 | 404 |
| MS.gene41734.t1 | MTR_6g029250 | 49.219 | 256 | 99 | 9 | 1 | 256 | 1 | 225 | 3.78e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41734.t1 | AT5G18130 | 32.423 | 293 | 150 | 9 | 1 | 258 | 1 | 280 | 1.68e-36 | 130 |
| MS.gene41734.t1 | AT3G03870 | 34.173 | 278 | 151 | 14 | 1 | 258 | 1 | 266 | 1.52e-32 | 120 |
| MS.gene41734.t1 | AT5G18130 | 29.344 | 259 | 136 | 8 | 1 | 225 | 1 | 246 | 5.76e-20 | 86.7 |
| MS.gene41734.t1 | AT3G03870 | 30.705 | 241 | 136 | 13 | 1 | 222 | 1 | 229 | 4.22e-16 | 75.5 |
Find 48 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTTGTTGACATGAAAT+TGG | 0.182807 | 7.2:+22087363 | MS.gene41734:CDS |
| CCTCTACCACTACTAGATTT+TGG | 0.209211 | 7.2:-22087391 | None:intergenic |
| TTCTCCATGTTCTTCATTCT+AGG | 0.255315 | 7.2:-22087457 | None:intergenic |
| GTTGGAGCTATATGTTCTTT+TGG | 0.285385 | 7.2:+22087568 | MS.gene41734:CDS |
| ACAATTTGTGTCTTGTTCTT+TGG | 0.297991 | 7.2:+22087604 | MS.gene41734:CDS |
| GGAACATGGAAAATTTGTTT+TGG | 0.322740 | 7.2:-22087202 | None:intergenic |
| GAACATGGAGAATGAAAATA+AGG | 0.328452 | 7.2:+22087468 | MS.gene41734:CDS |
| TCTTTCACCAGCCCTTCATT+TGG | 0.338022 | 7.2:-22087256 | None:intergenic |
| ATGATGGGTTCAAATTGAAT+TGG | 0.356134 | 7.2:-22087223 | None:intergenic |
| TAATACTACTTTGGTCTTGT+TGG | 0.368197 | 7.2:-22087651 | None:intergenic |
| AACAAGACCAAAGTAGTATT+AGG | 0.368502 | 7.2:+22087653 | MS.gene41734:CDS |
| AGCAGATCTCACATAACTTA+TGG | 0.371654 | 7.2:+22088999 | MS.gene41734:CDS |
| ATTTGGAACCTTGTCAATGA+TGG | 0.382204 | 7.2:-22087239 | None:intergenic |
| TGGGTGATCCTTTCTGATGA+TGG | 0.393897 | 7.2:+22087055 | MS.gene41734:CDS |
| TTGATCAGCTTCCTCTATCT+CGG | 0.423812 | 7.2:-22087302 | None:intergenic |
| TCTTGAACCTAATACTACTT+TGG | 0.449158 | 7.2:-22087660 | None:intergenic |
| TGATCAGCTTCCTCTATCTC+GGG | 0.452128 | 7.2:-22087301 | None:intergenic |
| AATTCAAGTCCCCGAGATAG+AGG | 0.452399 | 7.2:+22087291 | MS.gene41734:CDS |
| TTGTGGAAGTGGAGCTTGAC+AGG | 0.453604 | 7.2:+22087544 | MS.gene41734:CDS |
| GAAGCATTTGCAGCAGTAAG+AGG | 0.455785 | 7.2:+22088966 | MS.gene41734:CDS |
| ATTGACAAGGTTCCAAATGA+AGG | 0.461067 | 7.2:+22087244 | MS.gene41734:CDS |
| TTTGGAACCTTGTCAATGAT+GGG | 0.478486 | 7.2:-22087238 | None:intergenic |
| CCAAAATCTAGTAGTGGTAG+AGG | 0.509925 | 7.2:+22087391 | MS.gene41734:CDS |
| CAAGGTTCCAAATGAAGGGC+TGG | 0.510901 | 7.2:+22087249 | MS.gene41734:CDS |
| AAGGAAGGAGAGGACATGAA+TGG | 0.517989 | 7.2:+22087511 | MS.gene41734:CDS |
| GGCTACTATGATAGTGTTTG+AGG | 0.524289 | 7.2:+22089023 | MS.gene41734:CDS |
| AAGTGGAGCTTGACAGGAGT+TGG | 0.528199 | 7.2:+22087550 | MS.gene41734:CDS |
| ATCTCCATGTCTGCATCAAG+TGG | 0.532042 | 7.2:-22087424 | None:intergenic |
| GTTATGTGAGATCTGCTCAA+TGG | 0.533356 | 7.2:-22088993 | None:intergenic |
| TTCTCCACTTGATGCAGACA+TGG | 0.549790 | 7.2:+22087420 | MS.gene41734:CDS |
| ATGTACTATGATGAGAAGGA+AGG | 0.568648 | 7.2:+22087496 | MS.gene41734:CDS |
| TTGACAAGGTTCCAAATGAA+GGG | 0.592489 | 7.2:+22087245 | MS.gene41734:CDS |
| GTTCAAATTGAATTGGAACA+TGG | 0.592625 | 7.2:-22087216 | None:intergenic |
| AAACTCACTCGTCTTTGACA+AGG | 0.596384 | 7.2:+22087120 | MS.gene41734:CDS |
| TGTTCTTTGGAAGTCAACAA+AGG | 0.599769 | 7.2:+22087617 | MS.gene41734:CDS |
| TGTTATGTACTATGATGAGA+AGG | 0.601438 | 7.2:+22087492 | MS.gene41734:CDS |
| GAAGGAGAGGACATGAATGG+TGG | 0.601946 | 7.2:+22087514 | MS.gene41734:CDS |
| CAAGATCTACACTGATGACA+AGG | 0.613940 | 7.2:+22087678 | MS.gene41734:CDS |
| ATTTGAACCCATCATTGACA+AGG | 0.620426 | 7.2:+22087231 | MS.gene41734:CDS |
| AAAGAACAAGACACAAATTG+TGG | 0.626637 | 7.2:-22087602 | None:intergenic |
| GATCAGCTTCCTCTATCTCG+GGG | 0.628424 | 7.2:-22087300 | None:intergenic |
| CTATGATGAGAAGGAAGGAG+AGG | 0.636243 | 7.2:+22087501 | MS.gene41734:CDS |
| ATTGCAGAGGGTTAAGCAAG+TGG | 0.641403 | 7.2:+22088920 | MS.gene41734:intron |
| ATCTCCTAGAATGAAGAACA+TGG | 0.641567 | 7.2:+22087453 | MS.gene41734:CDS |
| GAGTCACCAAAATCTAGTAG+TGG | 0.643722 | 7.2:+22087385 | MS.gene41734:CDS |
| AGATCTCACATAACTTATGG+TGG | 0.644653 | 7.2:+22089002 | MS.gene41734:CDS |
| GAAGATGGATATCAATGAGT+GGG | 0.674672 | 7.2:+22087036 | None:intergenic |
| TGAAGATGGATATCAATGAG+TGG | 0.698977 | 7.2:+22087035 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAGAATATATTGTATT+GGG | - | chr7.2:22088590-22088609 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr7.2:22087935-22087954 | MS.gene41734:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr7.2:22087954-22087935 | None:intergenic | 10.0% |
| !! | ATATTAATTAGAGTTATAAA+AGG | + | chr7.2:22087995-22088014 | MS.gene41734:intron | 10.0% |
| !! | CAATTATAAATAATTTATGA+GGG | + | chr7.2:22088356-22088375 | MS.gene41734:intron | 10.0% |
| !! | CTTGTTAATAATTTATAATT+AGG | - | chr7.2:22088431-22088450 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr7.2:22087934-22087953 | MS.gene41734:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr7.2:22087953-22087934 | None:intergenic | 10.0% |
| !! | TATTAATTAGAGTTATAAAA+GGG | + | chr7.2:22087996-22088015 | MS.gene41734:intron | 10.0% |
| !! | TCAATTATAAATAATTTATG+AGG | + | chr7.2:22088355-22088374 | MS.gene41734:intron | 10.0% |
| !!! | TTTAGAAATTTAAAAAGTAT+AGG | + | chr7.2:22088712-22088731 | MS.gene41734:intron | 10.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr7.2:22088650-22088669 | MS.gene41734:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr7.2:22087936-22087955 | MS.gene41734:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr7.2:22087955-22087936 | None:intergenic | 15.0% |
| !! | GAAAATAGAATATATTGTAT+TGG | - | chr7.2:22088591-22088610 | None:intergenic | 15.0% |
| !!! | AACACTTTTTTTTTAGTAAA+TGG | + | chr7.2:22088090-22088109 | MS.gene41734:intron | 15.0% |
| !!! | ATATATGAGACTTTTAAAAT+AGG | + | chr7.2:22088192-22088211 | MS.gene41734:intron | 15.0% |
| !!! | TTAAAAACTTTTTAGTTTAG+AGG | + | chr7.2:22088405-22088424 | MS.gene41734:intron | 15.0% |
| !! | AAAAGTGGAATATATTGAAT+TGG | + | chr7.2:22088020-22088039 | MS.gene41734:intron | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr7.2:22087959-22087978 | MS.gene41734:intron | 20.0% |
| !! | AATAATGTCATAGAAAAAAG+GGG | + | chr7.2:22088772-22088791 | MS.gene41734:intron | 20.0% |
| !! | ACAATAATGTCATAGAAAAA+AGG | + | chr7.2:22088770-22088789 | MS.gene41734:intron | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr7.2:22088649-22088668 | MS.gene41734:intron | 20.0% |
| !! | CAATAATGTCATAGAAAAAA+GGG | + | chr7.2:22088771-22088790 | MS.gene41734:intron | 20.0% |
| !! | TATTGAAAATTGAAATGACT+CGG | + | chr7.2:22088058-22088077 | MS.gene41734:intron | 20.0% |
| !! | TTACAAATATTTAAATGTCC+AGG | - | chr7.2:22088313-22088332 | None:intergenic | 20.0% |
| !! | TTATTCTTGAATAGTCAAAA+TGG | + | chr7.2:22088831-22088850 | MS.gene41734:intron | 20.0% |
| !!! | GAAATTTAAAAAGTATAGGA+TGG | + | chr7.2:22088716-22088735 | MS.gene41734:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr7.2:22088480-22088499 | None:intergenic | 20.0% |
| !!! | TTTTAATGGTTCAATATCAA+TGG | - | chr7.2:22087179-22087198 | None:intergenic | 20.0% |
| ! | AAAATATTGTTTGAGCATCT+TGG | + | chr7.2:22088166-22088185 | MS.gene41734:intron | 25.0% |
| ! | ACACTAGTATCAATTGAATA+TGG | - | chr7.2:22087855-22087874 | None:intergenic | 25.0% |
| ! | ATAATGTCATAGAAAAAAGG+GGG | + | chr7.2:22088773-22088792 | MS.gene41734:intron | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | + | chr7.2:22087958-22087977 | MS.gene41734:intron | 25.0% |
| ! | TAAGAGTTGACATAAAGATT+TGG | - | chr7.2:22087780-22087799 | None:intergenic | 25.0% |
| !! | CTCTTACTATGTTTTATCTA+TGG | + | chr7.2:22087794-22087813 | MS.gene41734:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr7.2:22088503-22088522 | None:intergenic | 25.0% |
| !! | TTGAATAGTCAAAATGGATT+AGG | + | chr7.2:22088837-22088856 | MS.gene41734:intron | 25.0% |
| !!! | AATGGTTTTTGTTGATTTTG+GGG | - | chr7.2:22087161-22087180 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTGGCACTTTTAA+TGG | - | chr7.2:22087193-22087212 | None:intergenic | 25.0% |
| !!! | CAAATTTGTTGACATGAAAT+TGG | + | chr7.2:22087363-22087382 | MS.gene41734:CDS | 25.0% |
| !!! | CAATGGTTTTTGTTGATTTT+GGG | - | chr7.2:22087162-22087181 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr7.2:22088481-22088500 | None:intergenic | 25.0% |
| !!! | TCAATGGTTTTTGTTGATTT+TGG | - | chr7.2:22087163-22087182 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr7.2:22088502-22088521 | None:intergenic | 25.0% |
| AAAGAACAAGACACAAATTG+TGG | - | chr7.2:22087605-22087624 | None:intergenic | 30.0% | |
| AACAAGACCAAAGTAGTATT+AGG | + | chr7.2:22087653-22087672 | MS.gene41734:CDS | 30.0% | |
| AATAAGTGTGAAATGAGTCA+AGG | - | chr7.2:22087915-22087934 | None:intergenic | 30.0% | |
| ATAAGTGTGAAATGAGTCAA+GGG | - | chr7.2:22087914-22087933 | None:intergenic | 30.0% | |
| ATTATTGTCCATCAATTGAC+AGG | - | chr7.2:22088758-22088777 | None:intergenic | 30.0% | |
| ATTCAAAGCTGTTTACTTCA+GGG | - | chr7.2:22088285-22088304 | None:intergenic | 30.0% | |
| GAACATGGAGAATGAAAATA+AGG | + | chr7.2:22087468-22087487 | MS.gene41734:CDS | 30.0% | |
| GAGTTATAAAAGGGAAAAAG+TGG | + | chr7.2:22088005-22088024 | MS.gene41734:intron | 30.0% | |
| GTTCAAATTGAATTGGAACA+TGG | - | chr7.2:22087219-22087238 | None:intergenic | 30.0% | |
| TCTATGGATAAGACTTGAAT+CGG | + | chr7.2:22087810-22087829 | MS.gene41734:intron | 30.0% | |
| TCTTGAACCTAATACTACTT+TGG | - | chr7.2:22087663-22087682 | None:intergenic | 30.0% | |
| TGCAATCACAATCACAATTA+AGG | - | chr7.2:22088906-22088925 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr7.2:22087943-22087962 | MS.gene41734:intron | 30.0% | |
| TGTTATGTACTATGATGAGA+AGG | + | chr7.2:22087492-22087511 | MS.gene41734:CDS | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr7.2:22088654-22088673 | MS.gene41734:intron | 30.0% | |
| ! | ACAATTTGTGTCTTGTTCTT+TGG | + | chr7.2:22087604-22087623 | MS.gene41734:CDS | 30.0% |
| ! | TAAAAAGTATAGGATGGTGA+TGG | + | chr7.2:22088722-22088741 | MS.gene41734:intron | 30.0% |
| !! | ATGATGGGTTCAAATTGAAT+TGG | - | chr7.2:22087226-22087245 | None:intergenic | 30.0% |
| !! | GGAACATGGAAAATTTGTTT+TGG | - | chr7.2:22087205-22087224 | None:intergenic | 30.0% |
| !! | TAATACTACTTTGGTCTTGT+TGG | - | chr7.2:22087654-22087673 | None:intergenic | 30.0% |
| !!! | TTGAAATGACTCGGTTATTT+TGG | + | chr7.2:22088067-22088086 | MS.gene41734:intron | 30.0% |
| AATTGTGATTGTGATTGCAG+AGG | + | chr7.2:22088907-22088926 | MS.gene41734:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr7.2:22088467-22088486 | None:intergenic | 35.0% | |
| AGATCTCACATAACTTATGG+TGG | + | chr7.2:22089002-22089021 | MS.gene41734:CDS | 35.0% | |
| AGCAGATCTCACATAACTTA+TGG | + | chr7.2:22088999-22089018 | MS.gene41734:CDS | 35.0% | |
| AGTAAATGGCTCAGTTAATC+CGG | + | chr7.2:22088104-22088123 | MS.gene41734:intron | 35.0% | |
| ATCTCCTAGAATGAAGAACA+TGG | + | chr7.2:22087453-22087472 | MS.gene41734:CDS | 35.0% | |
| ATGTACTATGATGAGAAGGA+AGG | + | chr7.2:22087496-22087515 | MS.gene41734:CDS | 35.0% | |
| ATTGACAAGGTTCCAAATGA+AGG | + | chr7.2:22087244-22087263 | MS.gene41734:CDS | 35.0% | |
| ATTGTGATTGTGATTGCAGA+GGG | + | chr7.2:22088908-22088927 | MS.gene41734:intron | 35.0% | |
| ATTTGAACCCATCATTGACA+AGG | + | chr7.2:22087231-22087250 | MS.gene41734:CDS | 35.0% | |
| CAAAAAAGCCATCATCAGAA+AGG | - | chr7.2:22087066-22087085 | None:intergenic | 35.0% | |
| GAGAAATTCCTGTCAATTGA+TGG | + | chr7.2:22088747-22088766 | MS.gene41734:intron | 35.0% | |
| GATTCAAAGCTGTTTACTTC+AGG | - | chr7.2:22088286-22088305 | None:intergenic | 35.0% | |
| TTCTCCATGTTCTTCATTCT+AGG | - | chr7.2:22087460-22087479 | None:intergenic | 35.0% | |
| TTGACAAGGTTCCAAATGAA+GGG | + | chr7.2:22087245-22087264 | MS.gene41734:CDS | 35.0% | |
| ! | AAAAAAGGGGGTGATTGTTT+TGG | + | chr7.2:22088785-22088804 | MS.gene41734:intron | 35.0% |
| ! | ATTTGGAACCTTGTCAATGA+TGG | - | chr7.2:22087242-22087261 | None:intergenic | 35.0% |
| ! | GTTGGAGCTATATGTTCTTT+TGG | + | chr7.2:22087568-22087587 | MS.gene41734:CDS | 35.0% |
| ! | TGTTCTTTGGAAGTCAACAA+AGG | + | chr7.2:22087617-22087636 | MS.gene41734:CDS | 35.0% |
| ! | TTTGGAACCTTGTCAATGAT+GGG | - | chr7.2:22087241-22087260 | None:intergenic | 35.0% |
| !!! | TCTGATGATGGCTTTTTTGA+TGG | + | chr7.2:22087067-22087086 | MS.gene41734:CDS | 35.0% |
| !!! | TGAATGGTGGTTTTAACTTG+TGG | + | chr7.2:22087527-22087546 | MS.gene41734:CDS | 35.0% |
| AAACTCACTCGTCTTTGACA+AGG | + | chr7.2:22087120-22087139 | MS.gene41734:CDS | 40.0% | |
| AGGGCTCAATTAATTCAGGA+CGG | - | chr7.2:22087895-22087914 | None:intergenic | 40.0% | |
| CAAGATCTACACTGATGACA+AGG | + | chr7.2:22087678-22087697 | MS.gene41734:CDS | 40.0% | |
| CCAAAATCTAGTAGTGGTAG+AGG | + | chr7.2:22087391-22087410 | MS.gene41734:CDS | 40.0% | |
| CTCAATTAATTCAGGACGGA+GGG | - | chr7.2:22087891-22087910 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr7.2:22088466-22088485 | None:intergenic | 40.0% | |
| GAGTCACCAAAATCTAGTAG+TGG | + | chr7.2:22087385-22087404 | MS.gene41734:CDS | 40.0% | |
| GTAAATGGCTCAGTTAATCC+GGG | + | chr7.2:22088105-22088124 | MS.gene41734:intron | 40.0% | |
| GTCAAGGGCTCAATTAATTC+AGG | - | chr7.2:22087899-22087918 | None:intergenic | 40.0% | |
| GTTATGTGAGATCTGCTCAA+TGG | - | chr7.2:22088996-22089015 | None:intergenic | 40.0% | |
| TCGATAACTTTGCGCAGAAT+CGG | + | chr7.2:22087749-22087768 | MS.gene41734:intron | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr7.2:22088657-22088676 | MS.gene41734:intron | 40.0% | |
| TTGATCAGCTTCCTCTATCT+CGG | - | chr7.2:22087305-22087324 | None:intergenic | 40.0% | |
| ! | CCTCTACCACTACTAGATTT+TGG | - | chr7.2:22087394-22087413 | None:intergenic | 40.0% |
| !! | AACAGCTTTGAATCAGATCC+TGG | + | chr7.2:22088292-22088311 | MS.gene41734:intron | 40.0% |
| !!! | GGTTTTTGTTGATTTTGGGG+AGG | - | chr7.2:22087158-22087177 | None:intergenic | 40.0% |
| !!! | GTGGTTTTAACTTGTGGAAG+TGG | + | chr7.2:22087533-22087552 | MS.gene41734:CDS | 40.0% |
| AAGGAAGGAGAGGACATGAA+TGG | + | chr7.2:22087511-22087530 | MS.gene41734:CDS | 45.0% | |
| AATTCAAGTCCCCGAGATAG+AGG | + | chr7.2:22087291-22087310 | MS.gene41734:CDS | 45.0% | |
| ATCTCCATGTCTGCATCAAG+TGG | - | chr7.2:22087427-22087446 | None:intergenic | 45.0% | |
| ATTGCAGAGGGTTAAGCAAG+TGG | + | chr7.2:22088920-22088939 | MS.gene41734:intron | 45.0% | |
| CTATGATGAGAAGGAAGGAG+AGG | + | chr7.2:22087501-22087520 | MS.gene41734:CDS | 45.0% | |
| GCTCAATTAATTCAGGACGG+AGG | - | chr7.2:22087892-22087911 | None:intergenic | 45.0% | |
| TCTTTCACCAGCCCTTCATT+TGG | - | chr7.2:22087259-22087278 | None:intergenic | 45.0% | |
| TGATCAGCTTCCTCTATCTC+GGG | - | chr7.2:22087304-22087323 | None:intergenic | 45.0% | |
| TGGGTGATCCTTTCTGATGA+TGG | + | chr7.2:22087055-22087074 | MS.gene41734:CDS | 45.0% | |
| TTCTCCACTTGATGCAGACA+TGG | + | chr7.2:22087420-22087439 | MS.gene41734:CDS | 45.0% | |
| ! | GAAGCATTTGCAGCAGTAAG+AGG | + | chr7.2:22088966-22088985 | MS.gene41734:CDS | 45.0% |
| AAATACTACTCCCTCCGTCC+CGG | - | chr7.2:22088126-22088145 | None:intergenic | 50.0% | |
| AAGTGGAGCTTGACAGGAGT+TGG | + | chr7.2:22087550-22087569 | MS.gene41734:CDS | 50.0% | |
| ATGGCTCAGTTAATCCGGGA+CGG | + | chr7.2:22088109-22088128 | MS.gene41734:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr7.2:22088462-22088481 | None:intergenic | 50.0% | |
| CAAGGTTCCAAATGAAGGGC+TGG | + | chr7.2:22087249-22087268 | MS.gene41734:CDS | 50.0% | |
| GAAGGAGAGGACATGAATGG+TGG | + | chr7.2:22087514-22087533 | MS.gene41734:CDS | 50.0% | |
| GATCAGCTTCCTCTATCTCG+GGG | - | chr7.2:22087303-22087322 | None:intergenic | 50.0% | |
| TTGTGGAAGTGGAGCTTGAC+AGG | + | chr7.2:22087544-22087563 | MS.gene41734:CDS | 50.0% | |
| CTCAGTTAATCCGGGACGGA+GGG | + | chr7.2:22088113-22088132 | MS.gene41734:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr7.2:22088458-22088477 | None:intergenic | 55.0% | |
| AACAAGTGCTCCCTCCGTCC+CGG | + | chr7.2:22088445-22088464 | MS.gene41734:intron | 60.0% | |
| GCTCAGTTAATCCGGGACGG+AGG | + | chr7.2:22088112-22088131 | MS.gene41734:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr7.2:22088459-22088478 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 22087040 | 22089043 | 22087040 | ID=MS.gene41734 |
| chr7.2 | mRNA | 22087040 | 22089043 | 22087040 | ID=MS.gene41734.t1;Parent=MS.gene41734 |
| chr7.2 | exon | 22087040 | 22087699 | 22087040 | ID=MS.gene41734.t1.exon1;Parent=MS.gene41734.t1 |
| chr7.2 | CDS | 22087040 | 22087699 | 22087040 | ID=cds.MS.gene41734.t1;Parent=MS.gene41734.t1 |
| chr7.2 | exon | 22088927 | 22089043 | 22088927 | ID=MS.gene41734.t1.exon2;Parent=MS.gene41734.t1 |
| chr7.2 | CDS | 22088927 | 22089043 | 22088927 | ID=cds.MS.gene41734.t1;Parent=MS.gene41734.t1 |
| Gene Sequence |
| Protein sequence |
