AlfalfaGEDB | MS.gene060246

M. sativa cultivar XinJiangDaYe / MS.gene060246

KEGG: K13424
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060246.t1	RHN56682.1	89.6	212	21	1	1	212	1	211	4.60E-100	374

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060246.t1	Q6B6R4	47.8	115	54	2	81	195	197	305	3.6e-21	103.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060246.t1	G7IXC7	89.6	212	21	1	1	212	117	327	3.3e-100	374.0

TFs/TRs:

Gene ID	Type	Classification
MS.gene060246.t1	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050680	MS.gene060246	0.800706	1.27E-48	-1.69E-46
MS.gene052333	MS.gene060246	0.808062	3.73E-50	-1.69E-46
MS.gene053166	MS.gene060246	0.807443	5.04E-50	-1.69E-46
MS.gene055701	MS.gene060246	0.810825	9.51E-51	-1.69E-46
MS.gene056506	MS.gene060246	0.801715	7.90E-49	-1.69E-46
MS.gene060246	MS.gene061343	0.802184	6.33E-49	-1.69E-46
MS.gene060246	MS.gene25201	0.808083	3.69E-50	-1.69E-46
MS.gene060246	MS.gene27271	0.802816	4.69E-49	-1.69E-46
MS.gene060246	MS.gene29086	0.807356	5.26E-50	-1.69E-46
MS.gene060246	MS.gene31283	0.803691	3.09E-49	-1.69E-46
MS.gene060246	MS.gene32231	0.807569	4.74E-50	-1.69E-46
MS.gene060246	MS.gene35408	0.80396	2.72E-49	-1.69E-46
MS.gene060246	MS.gene39430	0.80147	8.87E-49	-1.69E-46
MS.gene060246	MS.gene41734	0.800013	1.76E-48	-1.69E-46
MS.gene060246	MS.gene42645	0.801371	9.29E-49	-1.69E-46
MS.gene060246	MS.gene44461	0.804266	2.35E-49	-1.69E-46
MS.gene060246	MS.gene45422	0.809467	1.87E-50	-1.69E-46
MS.gene060246	MS.gene52059	0.806586	7.65E-50	-1.69E-46
MS.gene060246	MS.gene55357	0.807109	5.93E-50	-1.69E-46
MS.gene060246	MS.gene61139	0.800976	1.12E-48	-1.69E-46
MS.gene060246	MS.gene67245	0.836168	1.10E-56	-1.69E-46
MS.gene060246	MS.gene70021	0.802022	6.83E-49	-1.69E-46
MS.gene060246	MS.gene70022	0.820551	6.46E-53	-1.69E-46
MS.gene060246	MS.gene75626	0.800401	1.47E-48	-1.69E-46
MS.gene060246	MS.gene77579	0.808759	2.64E-50	-1.69E-46
MS.gene060246	MS.gene83082	0.813249	2.82E-51	-1.69E-46
MS.gene060246	MS.gene95377	0.828638	8.04E-55	-1.69E-46
MS.gene060246	MS.gene98959	0.824157	9.40E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060246.t1	MTR_5g074200	89.623	212	21	1	1	212	117	327	8.12e-141	396
MS.gene060246.t1	MTR_5g093540	62.736	212	25	5	1	212	92	249	5.11e-78	234
MS.gene060246.t1	MTR_5g073850	66.387	119	38	2	1	118	49	166	1.76e-47	154
MS.gene060246.t1	MTR_5g074400	49.655	145	60	5	76	212	213	352	3.52e-32	122
MS.gene060246.t1	MTR_5g074400	58.065	62	25	1	104	164	420	481	2.35e-16	77.4
MS.gene060246.t1	MTR_3g031220	46.923	130	62	3	84	212	178	301	3.67e-26	103
MS.gene060246.t1	MTR_3g031220	46.923	130	62	3	84	212	178	301	5.86e-26	104
MS.gene060246.t1	MTR_3g031220	48.718	78	36	2	104	180	365	439	1.14e-14	72.4
MS.gene060246.t1	MTR_7g071120	54.651	86	35	2	86	170	150	232	1.00e-23	98.2
MS.gene060246.t1	MTR_7g071120	56.667	60	25	1	104	162	324	383	5.57e-15	73.2
MS.gene060246.t1	MTR_7g100510	64.706	68	23	1	105	172	190	256	1.84e-23	97.4
MS.gene060246.t1	MTR_7g100510	47.368	76	38	2	105	178	362	437	3.09e-13	68.2
MS.gene060246.t1	MTR_4g013260	44.068	118	61	4	85	200	164	278	3.02e-22	94.4
MS.gene060246.t1	MTR_4g013260	55.000	60	26	1	104	162	336	395	7.96e-14	69.7
MS.gene060246.t1	MTR_5g094430	42.593	108	52	2	65	172	171	268	6.42e-22	93.2
MS.gene060246.t1	MTR_5g094430	53.226	62	28	1	104	164	364	425	8.55e-15	72.8
MS.gene060246.t1	MTR_3g056100	59.375	64	26	0	104	167	243	306	8.41e-22	93.2
MS.gene060246.t1	MTR_3g056100	52.941	68	29	2	104	170	402	467	3.65e-15	73.9
MS.gene060246.t1	MTR_3g056100	59.375	64	26	0	104	167	243	306	9.19e-22	93.2
MS.gene060246.t1	MTR_3g056100	52.941	68	29	2	104	170	415	480	3.92e-15	73.9
MS.gene060246.t1	MTR_5g094430	42.593	108	52	2	65	172	59	156	9.84e-22	92.4
MS.gene060246.t1	MTR_5g094430	53.226	62	28	1	104	164	252	313	1.26e-14	72.0
MS.gene060246.t1	MTR_5g094430	42.593	108	52	2	65	172	37	134	1.02e-21	92.0
MS.gene060246.t1	MTR_5g094430	53.226	62	28	1	104	164	230	291	1.33e-14	72.0
MS.gene060246.t1	MTR_5g074080	64.706	68	24	0	1	68	1	68	1.05e-21	87.4
MS.gene060246.t1	MTR_3g056100	59.375	64	26	0	104	167	99	162	1.12e-21	92.4
MS.gene060246.t1	MTR_3g056100	52.941	68	29	2	104	170	258	323	6.37e-15	73.2
MS.gene060246.t1	MTR_3g056100	59.375	64	26	0	104	167	99	162	1.28e-21	92.0
MS.gene060246.t1	MTR_3g056100	52.941	68	29	2	104	170	271	336	6.70e-15	72.8
MS.gene060246.t1	MTR_5g042920	64.407	59	21	0	104	162	151	209	9.96e-21	89.7
MS.gene060246.t1	MTR_5g042920	54.839	62	27	1	104	164	320	381	1.57e-15	74.7
MS.gene060246.t1	MTR_7g011820	52.874	87	39	1	87	171	211	297	1.84e-20	89.0
MS.gene060246.t1	MTR_7g011820	50.000	76	34	2	104	178	410	482	1.67e-15	74.7
MS.gene060246.t1	MTR_7g080020	60.938	64	25	0	104	167	280	343	2.44e-20	89.0
MS.gene060246.t1	MTR_7g080020	53.226	62	28	1	104	164	493	554	1.80e-14	72.0
MS.gene060246.t1	MTR_3g009470	41.803	122	57	4	51	167	231	343	3.57e-19	85.5
MS.gene060246.t1	MTR_3g009470	42.742	124	57	4	51	170	231	344	1.81e-18	83.6
MS.gene060246.t1	MTR_3g009470	53.623	69	28	2	104	171	495	560	2.11e-13	68.9
MS.gene060246.t1	MTR_7g080000	57.143	63	27	0	105	167	235	297	6.09e-18	82.0
MS.gene060246.t1	MTR_7g080000	53.226	62	28	1	104	164	432	493	1.84e-14	72.0
MS.gene060246.t1	MTR_4g082580	52.857	70	32	1	104	172	145	214	4.58e-17	79.0
MS.gene060246.t1	MTR_4g082580	47.059	85	43	2	104	186	278	362	5.89e-15	72.8
MS.gene060246.t1	MTR_1g077780	50.704	71	34	1	104	173	62	132	6.19e-17	74.7
MS.gene060246.t1	MTR_5g097490	30.114	176	90	3	34	188	1	164	5.35e-15	73.2
MS.gene060246.t1	MTR_5g097490	46.667	60	31	1	104	162	252	311	3.68e-12	64.7
MS.gene060246.t1	MTR_6g046600	62.264	53	19	1	120	172	18	69	1.88e-14	67.4
MS.gene060246.t1	MTR_3g106060	38.889	90	49	3	105	188	139	228	3.26e-14	70.1
MS.gene060246.t1	MTR_5g091390	50.000	68	32	2	104	170	157	223	9.51e-14	68.9
MS.gene060246.t1	MTR_1g086790	50.000	68	31	2	104	170	158	223	1.72e-13	68.6
MS.gene060246.t1	MTR_7g109800	50.000	78	35	3	104	180	145	219	3.58e-13	67.4
MS.gene060246.t1	MTR_3g095080	54.386	57	25	1	104	159	168	224	3.69e-13	66.6
MS.gene060246.t1	MTR_2g033820	50.794	63	30	1	104	165	203	265	4.35e-13	67.4
MS.gene060246.t1	MTR_5g074090	48.750	80	36	3	1	79	121	196	4.61e-13	66.2
MS.gene060246.t1	MTR_3g095080	54.386	57	25	1	104	159	144	200	4.73e-13	65.9
MS.gene060246.t1	MTR_8g092140	54.386	57	25	1	104	159	160	216	4.84e-13	66.2
MS.gene060246.t1	MTR_8g007270	57.895	57	23	1	104	159	154	210	4.89e-13	65.9
MS.gene060246.t1	MTR_8g096730	47.619	63	32	1	104	165	70	132	5.47e-13	64.3
MS.gene060246.t1	MTR_4g094588	45.455	77	40	2	104	179	178	253	6.07e-13	67.0
MS.gene060246.t1	MTR_4g107970	50.820	61	28	2	104	162	178	238	6.19e-13	67.4
MS.gene060246.t1	MTR_4g094412	49.180	61	29	2	104	162	234	294	7.23e-13	67.0
MS.gene060246.t1	MTR_4g094412	49.180	61	29	2	104	162	243	303	7.36e-13	67.0
MS.gene060246.t1	MTR_4g107970	50.820	61	28	2	104	162	255	315	7.52e-13	67.0
MS.gene060246.t1	MTR_5g074130	51.351	74	36	0	1	74	121	194	9.92e-13	67.0
MS.gene060246.t1	MTR_5g093530	52.632	76	34	1	1	74	121	196	1.21e-12	66.6
MS.gene060246.t1	MTR_4g122530	53.333	60	27	1	104	162	208	267	1.31e-12	66.2
MS.gene060246.t1	MTR_5g097500	42.105	76	44	0	91	166	70	145	1.58e-12	65.5
MS.gene060246.t1	MTR_5g097500	40.580	69	40	1	104	171	230	298	4.16e-11	61.6
MS.gene060246.t1	MTR_7g079010	54.386	57	25	1	104	159	141	197	1.70e-12	64.3
MS.gene060246.t1	MTR_2g105060	38.095	84	50	2	105	186	95	178	1.72e-12	64.7
MS.gene060246.t1	MTR_7g028415	49.206	63	31	1	104	165	93	155	1.83e-12	63.5
MS.gene060246.t1	MTR_7g028710	49.206	63	31	1	104	165	93	155	1.83e-12	63.5
MS.gene060246.t1	MTR_8g092010	40.187	107	51	4	67	162	63	167	2.12e-12	63.5
MS.gene060246.t1	MTR_2g105060	44.776	67	35	2	105	169	170	236	2.52e-12	65.1
MS.gene060246.t1	MTR_4g132430	43.939	66	35	2	104	167	127	192	3.08e-12	65.1
MS.gene060246.t1	MTR_5g073840	48.684	76	36	1	1	73	120	195	4.04e-12	63.9
MS.gene060246.t1	MTR_3g053330	37.209	86	52	2	105	188	252	337	5.18e-12	64.7
MS.gene060246.t1	MTR_3g104750	52.632	57	26	1	104	159	104	160	5.23e-12	62.0
MS.gene060246.t1	MTR_5g073460	32.237	152	92	4	1	145	120	267	5.40e-12	64.7
MS.gene060246.t1	MTR_4g132430	44.615	65	34	2	104	166	261	325	8.98e-12	63.9
MS.gene060246.t1	MTR_2g023930	48.333	60	29	2	105	162	306	365	2.13e-11	62.8
MS.gene060246.t1	MTR_7g009730	48.333	60	29	2	104	161	219	278	2.25e-11	62.8
MS.gene060246.t1	MTR_7g062220	50.000	58	28	1	104	160	124	181	3.14e-11	62.0
MS.gene060246.t1	MTR_1g015140	37.255	102	58	3	59	159	62	158	3.34e-11	59.7
MS.gene060246.t1	MTR_4g130900	47.458	59	30	1	105	162	360	418	6.18e-11	61.2
MS.gene060246.t1	MTR_3g095040	51.667	60	28	1	104	162	118	177	8.64e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060246.t1	AT5G07100	61.429	70	25	2	104	172	24	92	1.15e-22	91.7
MS.gene060246.t1	AT5G07100	56.667	60	25	1	104	162	141	200	7.80e-16	73.6
MS.gene060246.t1	AT5G07100	61.429	70	25	2	104	172	24	92	1.15e-22	91.7
MS.gene060246.t1	AT5G07100	56.667	60	25	1	104	162	141	200	7.80e-16	73.6
MS.gene060246.t1	AT5G07100	61.429	70	25	2	104	172	24	92	1.15e-22	91.7
MS.gene060246.t1	AT5G07100	56.667	60	25	1	104	162	141	200	7.80e-16	73.6
MS.gene060246.t1	AT5G07100	61.429	70	25	2	104	172	24	92	1.15e-22	91.7
MS.gene060246.t1	AT5G07100	56.667	60	25	1	104	162	141	200	7.80e-16	73.6
MS.gene060246.t1	AT1G13960	60.606	66	26	0	104	169	229	294	1.16e-22	95.5
MS.gene060246.t1	AT1G13960	56.667	60	25	1	104	162	409	468	4.08e-16	76.6
MS.gene060246.t1	AT1G13960	60.606	66	26	0	104	169	76	141	1.52e-22	94.0
MS.gene060246.t1	AT1G13960	56.667	60	25	1	104	162	256	315	8.84e-16	75.1
MS.gene060246.t1	AT5G07100	61.429	70	25	2	104	172	117	185	1.52e-22	93.2
MS.gene060246.t1	AT5G07100	56.667	60	25	1	104	162	234	293	7.63e-16	75.1
MS.gene060246.t1	AT2G38470	63.333	60	22	0	104	163	184	243	3.34e-22	94.4
MS.gene060246.t1	AT2G38470	54.839	62	27	1	104	164	362	423	6.53e-14	70.1
MS.gene060246.t1	AT4G26640	50.000	96	37	2	85	170	182	276	6.53e-22	93.6
MS.gene060246.t1	AT4G26640	48.148	81	39	2	104	183	381	459	3.02e-15	74.3
MS.gene060246.t1	AT4G26640	50.000	96	37	2	85	170	142	236	6.55e-22	93.2
MS.gene060246.t1	AT4G26640	48.148	81	39	2	104	183	341	419	3.46e-15	73.9
MS.gene060246.t1	AT4G26640	50.000	96	37	2	85	170	110	204	8.09e-22	92.8
MS.gene060246.t1	AT4G26640	48.148	81	39	2	104	183	309	387	3.91e-15	73.6
MS.gene060246.t1	AT4G26640	50.000	96	37	2	85	170	6	100	1.06e-21	92.0
MS.gene060246.t1	AT4G26640	48.148	81	39	2	104	183	205	283	4.05e-15	73.6
MS.gene060246.t1	AT4G26640	50.000	96	37	2	85	170	6	100	1.06e-21	92.0
MS.gene060246.t1	AT4G26640	48.148	81	39	2	104	183	205	283	4.05e-15	73.6
MS.gene060246.t1	AT4G26640	50.000	96	37	2	85	170	6	100	1.06e-21	92.0
MS.gene060246.t1	AT4G26640	48.148	81	39	2	104	183	205	283	4.05e-15	73.6
MS.gene060246.t1	AT4G26640	50.000	96	37	2	85	170	6	100	1.06e-21	92.0
MS.gene060246.t1	AT4G26640	48.148	81	39	2	104	183	205	283	4.05e-15	73.6
MS.gene060246.t1	AT2G03340	57.353	68	29	0	104	171	250	317	1.45e-21	92.4
MS.gene060246.t1	AT2G03340	54.839	62	27	1	104	164	415	476	5.32e-16	76.3
MS.gene060246.t1	AT2G30250	47.059	102	48	1	102	203	164	259	5.90e-21	90.1
MS.gene060246.t1	AT2G30250	55.932	59	25	1	105	162	329	387	3.35e-14	70.9
MS.gene060246.t1	AT2G37260	57.353	68	29	0	105	172	166	233	6.50e-21	90.1
MS.gene060246.t1	AT2G37260	38.824	85	45	2	78	161	329	407	3.42e-11	62.0
MS.gene060246.t1	AT2G37260	57.353	68	29	0	105	172	86	153	6.58e-21	89.4
MS.gene060246.t1	AT2G37260	38.824	85	45	2	78	161	249	327	7.34e-11	60.8
MS.gene060246.t1	AT2G37260	57.353	68	29	0	105	172	84	151	6.78e-21	89.4
MS.gene060246.t1	AT2G37260	38.824	85	45	2	78	161	247	325	7.58e-11	60.8
MS.gene060246.t1	AT5G56270	59.375	64	26	0	104	167	273	336	1.01e-20	90.1
MS.gene060246.t1	AT5G56270	56.452	62	26	1	104	164	487	548	7.02e-16	76.3
MS.gene060246.t1	AT2G04880	50.000	74	37	0	89	162	96	169	7.22e-20	87.4
MS.gene060246.t1	AT2G04880	51.667	60	28	1	104	162	307	366	2.36e-13	68.6
MS.gene060246.t1	AT2G04880	50.000	74	37	0	89	162	96	169	9.05e-20	87.0
MS.gene060246.t1	AT2G04880	51.667	60	28	1	104	162	283	342	2.58e-13	68.6
MS.gene060246.t1	AT3G01080	60.000	60	24	0	104	163	205	264	4.26e-19	84.0
MS.gene060246.t1	AT4G26440	61.017	59	23	0	104	162	178	236	7.58e-19	84.7
MS.gene060246.t1	AT4G26440	53.623	69	28	2	104	171	372	437	7.55e-14	70.1
MS.gene060246.t1	AT3G01080	60.000	60	24	0	104	163	205	264	2.08e-18	83.2
MS.gene060246.t1	AT3G01080	58.333	60	24	1	104	162	344	403	4.24e-17	79.3
MS.gene060246.t1	AT3G01080	60.000	60	24	0	104	163	167	226	2.44e-18	82.8
MS.gene060246.t1	AT3G01080	58.333	60	24	1	104	162	306	365	5.15e-17	79.0
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.11e-15	75.9
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.15e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.22e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.22e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.35e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.38e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	390	470	1.41e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.43e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.43e-15	75.5
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.47e-15	75.5
MS.gene060246.t1	AT5G13080	53.968	63	28	1	104	165	67	129	1.53e-15	71.2
MS.gene060246.t1	AT4G12020	44.706	85	43	2	91	175	457	537	1.71e-15	75.1
MS.gene060246.t1	AT1G55600	46.250	80	37	2	91	164	289	368	5.45e-15	73.2
MS.gene060246.t1	AT1G29860	49.315	73	35	2	104	175	136	207	2.37e-14	70.5
MS.gene060246.t1	AT2G44745	38.655	119	54	3	60	159	83	201	3.27e-14	69.3
MS.gene060246.t1	AT2G25000	32.653	98	60	3	73	168	76	169	9.72e-14	68.2
MS.gene060246.t1	AT2G25000	32.653	98	60	3	73	168	76	169	9.72e-14	68.2
MS.gene060246.t1	AT2G25000	32.653	98	60	3	73	168	98	191	1.54e-13	67.8
MS.gene060246.t1	AT2G25000	32.653	98	60	3	73	168	119	212	2.67e-13	67.4
MS.gene060246.t1	AT5G49520	53.226	62	28	1	102	162	219	280	3.49e-13	67.8
MS.gene060246.t1	AT1G64000	50.877	57	27	1	104	159	114	170	5.95e-13	65.5
MS.gene060246.t1	AT4G04450	41.558	77	43	2	105	179	199	275	7.08e-13	67.0
MS.gene060246.t1	AT4G18170	51.667	60	28	1	104	162	172	231	9.43e-13	66.2
MS.gene060246.t1	AT4G04450	41.558	77	43	2	105	179	293	369	1.02e-12	66.6
MS.gene060246.t1	AT2G46130	54.386	57	25	1	104	159	30	86	1.20e-12	62.4
MS.gene060246.t1	AT5G41570	50.877	57	27	1	104	159	98	154	1.35e-12	63.9
MS.gene060246.t1	AT4G30935	37.209	86	54	0	80	165	144	229	2.02e-12	65.9
MS.gene060246.t1	AT4G30935	40.541	74	43	1	105	177	332	405	6.80e-12	64.3
MS.gene060246.t1	AT1G68150	49.180	61	29	2	104	162	235	295	3.19e-12	65.1
MS.gene060246.t1	AT1G80840	46.667	60	30	2	105	162	147	206	5.09e-12	63.9
MS.gene060246.t1	AT5G15130	43.836	73	37	3	104	172	185	257	5.44e-12	64.7
MS.gene060246.t1	AT5G15130	43.836	73	37	3	104	172	227	299	5.54e-12	64.7
MS.gene060246.t1	AT5G46350	50.000	60	29	1	104	162	183	242	6.80e-12	63.9
MS.gene060246.t1	AT2G47260	50.000	60	29	1	104	162	174	233	9.86e-12	63.5
MS.gene060246.t1	AT4G39410	52.632	57	26	1	104	159	223	279	1.09e-11	63.2
MS.gene060246.t1	AT2G21900	48.333	60	30	1	104	162	109	168	1.24e-11	62.0
MS.gene060246.t1	AT3G62340	36.842	114	59	3	104	204	118	231	1.31e-11	62.8
MS.gene060246.t1	AT5G26170	50.877	57	27	1	104	159	113	169	1.92e-11	60.8
MS.gene060246.t1	AT5G43290	51.724	58	27	1	104	160	114	171	4.18e-11	61.2
MS.gene060246.t1	AT1G69310	52.542	59	27	1	102	159	145	203	6.22e-11	60.8
MS.gene060246.t1	AT1G69310	52.542	59	27	1	102	159	145	203	6.22e-11	60.8
MS.gene060246.t1	AT1G69310	52.542	59	27	1	102	159	145	203	6.22e-11	60.8
MS.gene060246.t1	AT3G01970	47.619	63	32	1	104	165	65	127	6.83e-11	58.5
MS.gene060246.t1	AT5G64810	50.877	57	27	1	104	159	110	166	7.04e-11	59.7
MS.gene060246.t1	AT4G22070	46.667	60	30	2	105	162	298	357	8.75e-11	61.2
MS.gene060246.t1	AT4G22070	46.667	60	30	2	105	162	298	357	8.75e-11	61.2
MS.gene060246.t1	AT4G22070	46.667	60	30	2	105	162	298	357	8.75e-11	61.2
MS.gene060246.t1	AT4G22070	46.667	60	30	2	105	162	298	357	8.75e-11	61.2

Find 27 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATTGTTCTTCGTTCGAAAT+TGG	0.227728	5.4:-59984485	MS.gene060246:CDS
TTGGATTTGAGGCATGAAAT+TGG	0.257475	5.4:-59984466	MS.gene060246:CDS
ATCATGATGATGGGTATAAT+TGG	0.315840	5.4:-59984321	MS.gene060246:CDS
GATCTCCTCAATTTCTTCCT+TGG	0.315896	5.4:-59984580	MS.gene060246:CDS
ATCATTTGGAAGTGAACAAT+TGG	0.346812	5.4:-59984050	MS.gene060246:CDS
ATTGATACTGAAGACTTTGC+AGG	0.359791	5.4:+59984013	None:intergenic
GACTTGCAAGATCAATCATT+TGG	0.392633	5.4:-59984064	MS.gene060246:CDS
TTATCAAGACAGATTGATCT+TGG	0.404285	5.4:-59984613	MS.gene060246:CDS
ATAGTTGAGAGAACTGTAGA+TGG	0.406452	5.4:-59984211	MS.gene060246:CDS
TATGAAGATAAAGTAGCAAA+AGG	0.433124	5.4:-59984292	MS.gene060246:CDS
TGATTGATCTTGCAAGTCAA+TGG	0.446931	5.4:+59984069	None:intergenic
AAAATCAGTCTTTGATAAGA+AGG	0.457061	5.4:-59984348	MS.gene060246:CDS
GATGTAGCTATTGAAATTAA+TGG	0.458940	5.4:-59984424	MS.gene060246:CDS
TTTCAATCTGATTATAGTAA+TGG	0.460671	5.4:-59984379	MS.gene060246:CDS
ACAAAGGTACACATAATCAT+TGG	0.470196	5.4:-59984168	MS.gene060246:CDS
TTCCTCTTCATTGTAGACTT+AGG	0.480559	5.4:+59984142	None:intergenic
AGAAGGATGAATCATGATGA+TGG	0.481196	5.4:-59984331	MS.gene060246:CDS
TTCGTTCGAAATTGGATTTG+AGG	0.491204	5.4:-59984477	MS.gene060246:CDS
GATTGATCTTGCAAGTCAAT+GGG	0.496257	5.4:+59984070	None:intergenic
ATTGATCTTCATCAATTGAA+CGG	0.555673	5.4:+59984549	None:intergenic
AAATTCCAAGGAAGAAATTG+AGG	0.559723	5.4:+59984575	None:intergenic
GAAGGATGAATCATGATGAT+GGG	0.572110	5.4:-59984330	MS.gene060246:CDS
ATGGGACCAATTGTCTCTGA+AGG	0.591030	5.4:+59984088	None:intergenic
TGCCTAAGTCTACAATGAAG+AGG	0.601126	5.4:-59984144	MS.gene060246:CDS
ATTGAACGGTGAAAATTCCA+AGG	0.604070	5.4:+59984563	None:intergenic
ATCGTCGAGACATTATACAA+AGG	0.713305	5.4:-59984184	MS.gene060246:CDS
GAAGCTATTATAAATGTACG+TGG	0.742371	5.4:-59984255	MS.gene060246:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCAATCTGATTATAGTAA+TGG	-	chr5.4:59984255-59984274	MS.gene060246:CDS	20.0%
!!!	ATTTTCTTCACAAAACAATT+AGG	+	chr5.4:59984405-59984424	None:intergenic	20.0%
!	AAAATCAGTCTTTGATAAGA+AGG	-	chr5.4:59984286-59984305	MS.gene060246:CDS	25.0%
!	ATTGATCTTCATCAATTGAA+CGG	+	chr5.4:59984088-59984107	None:intergenic	25.0%
!	GATGTAGCTATTGAAATTAA+TGG	-	chr5.4:59984210-59984229	MS.gene060246:CDS	25.0%
!	TATGAAGATAAAGTAGCAAA+AGG	-	chr5.4:59984342-59984361	MS.gene060246:CDS	25.0%
!!!	TTATCAAAGACTGATTTTGT+TGG	+	chr5.4:59984284-59984303	None:intergenic	25.0%
	AAATTCCAAGGAAGAAATTG+AGG	+	chr5.4:59984062-59984081	None:intergenic	30.0%
	ATCATTTGGAAGTGAACAAT+TGG	-	chr5.4:59984584-59984603	MS.gene060246:CDS	30.0%
	GAAGCTATTATAAATGTACG+TGG	-	chr5.4:59984379-59984398	MS.gene060246:CDS	30.0%
	TATTGTTCTTCGTTCGAAAT+TGG	-	chr5.4:59984149-59984168	MS.gene060246:CDS	30.0%
	TTATCAAGACAGATTGATCT+TGG	-	chr5.4:59984021-59984040	MS.gene060246:CDS	30.0%
!	ACAAAGGTACACATAATCAT+TGG	-	chr5.4:59984466-59984485	MS.gene060246:CDS	30.0%
!!	ATCATGATGATGGGTATAAT+TGG	-	chr5.4:59984313-59984332	MS.gene060246:CDS	30.0%
	AGAAGGATGAATCATGATGA+TGG	-	chr5.4:59984303-59984322	MS.gene060246:CDS	35.0%
	ATAGTTGAGAGAACTGTAGA+TGG	-	chr5.4:59984423-59984442	MS.gene060246:CDS	35.0%
	ATCGTCGAGACATTATACAA+AGG	-	chr5.4:59984450-59984469	MS.gene060246:CDS	35.0%
	ATTGAACGGTGAAAATTCCA+AGG	+	chr5.4:59984074-59984093	None:intergenic	35.0%
	ATTGATACTGAAGACTTTGC+AGG	+	chr5.4:59984624-59984643	None:intergenic	35.0%
	GAAGGATGAATCATGATGAT+GGG	-	chr5.4:59984304-59984323	MS.gene060246:CDS	35.0%
	GACTTGCAAGATCAATCATT+TGG	-	chr5.4:59984570-59984589	MS.gene060246:CDS	35.0%
	GATTGATCTTGCAAGTCAAT+GGG	+	chr5.4:59984567-59984586	None:intergenic	35.0%
	TGATTGATCTTGCAAGTCAA+TGG	+	chr5.4:59984568-59984587	None:intergenic	35.0%
	TTCCTCTTCATTGTAGACTT+AGG	+	chr5.4:59984495-59984514	None:intergenic	35.0%
	TTCGTTCGAAATTGGATTTG+AGG	-	chr5.4:59984157-59984176	MS.gene060246:CDS	35.0%
!	CTTTTACCTTCAGAGACAAT+TGG	-	chr5.4:59984540-59984559	MS.gene060246:CDS	35.0%
!	TTGGATTTGAGGCATGAAAT+TGG	-	chr5.4:59984168-59984187	MS.gene060246:CDS	35.0%
	GATCTCCTCAATTTCTTCCT+TGG	-	chr5.4:59984054-59984073	MS.gene060246:CDS	40.0%
	TGCCTAAGTCTACAATGAAG+AGG	-	chr5.4:59984490-59984509	MS.gene060246:CDS	40.0%
	ATGGGACCAATTGTCTCTGA+AGG	+	chr5.4:59984549-59984568	None:intergenic	45.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	59984009	59984647	59984009	ID=MS.gene060246
chr5.4	mRNA	59984009	59984647	59984009	ID=MS.gene060246.t1;Parent=MS.gene060246
chr5.4	exon	59984009	59984647	59984009	ID=MS.gene060246.t1.exon1;Parent=MS.gene060246.t1
chr5.4	CDS	59984009	59984647	59984009	ID=cds.MS.gene060246.t1;Parent=MS.gene060246.t1

Gene Sequence

>MS.gene060246

ATGTCTTTTTGCTTATCAAGACAGATTGATCTTGGTTTTGAATCTGATCTCCTCAATTTCTTCCTTGGAATTTTCACCGTTCAATTGATGAAGATCAATTTGATTCTATCTATTGTTGCTGCAATCTTATGTTATTCTCTTATTGTTCTTCGTTCGAAATTGGATTTGAGGCATGAAATTGGAACTTCAAGAGTGCAAGATGATGTAGCTATTGAAATTAATGGTGTAGATAACGATAGAAATGAATTTCAATCTGATTATAGTAATGGTAGCCAACAAAATCAGTCTTTGATAAGAAGGATGAATCATGATGATGGGTATAATTGGAAAAAGTATGAAGATAAAGTAGCAAAAGGAAGTGAAAATCAAAGAAGCTATTATAAATGTACGTGGCCTAATTGTTTTGTGAAGAAAATAGTTGAGAGAACTGTAGATGGAGAAATCGTCGAGACATTATACAAAGGTACACATAATCATTGGATGCCTAAGTCTACAATGAAGAGGAATTCATCATCTGAGTATCTTTATTCACTTTTACCTTCAGAGACAATTGGTCCCATTGACTTGCAAGATCAATCATTTGGAAGTGAACAATTGGATTCTGATGAAGAACCTGCAAAGTCTTCAGTATCAATATGA

Protein sequence

>MS.gene060246.t1

MSFCLSRQIDLGFESDLLNFFLGIFTVQLMKINLILSIVAAILCYSLIVLRSKLDLRHEIGTSRVQDDVAIEINGVDNDRNEFQSDYSNGSQQNQSLIRRMNHDDGYNWKKYEDKVAKGSENQRSYYKCTWPNCFVKKIVERTVDGEIVETLYKGTHNHWMPKSTMKRNSSSEYLYSLLPSETIGPIDLQDQSFGSEQLDSDEEPAKSSVSI