Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42235.t1 | XP_003623840.1 | 96.1 | 560 | 22 | 0 | 1 | 560 | 1 | 560 | 8.30E-234 | 819.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42235.t1 | A2Q5C9 | 96.1 | 560 | 22 | 0 | 1 | 560 | 1 | 560 | 6.0e-234 | 819.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42235 | MS.gene28664 | PPI |
| MS.gene42235 | MS.gene32213 | PPI |
| MS.gene41659 | MS.gene42235 | PPI |
| MS.gene42235 | MS.gene33842 | PPI |
| MS.gene42235 | MS.gene06253 | PPI |
| MS.gene42235 | MS.gene052564 | PPI |
| MS.gene055531 | MS.gene42235 | PPI |
| MS.gene42235 | MS.gene052565 | PPI |
| MS.gene42235 | MS.gene013180 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42235.t1 | MTR_7g076220 | 96.429 | 560 | 20 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1087 |
| MS.gene42235.t1 | MTR_8g032570 | 76.773 | 564 | 124 | 3 | 1 | 560 | 24 | 584 | 0.0 | 872 |
| MS.gene42235.t1 | MTR_8g032570 | 76.773 | 564 | 124 | 3 | 1 | 560 | 1 | 561 | 0.0 | 871 |
| MS.gene42235.t1 | MTR_3g098730 | 33.766 | 539 | 329 | 11 | 34 | 559 | 30 | 553 | 6.44e-78 | 256 |
| MS.gene42235.t1 | MTR_4g091320 | 30.298 | 571 | 345 | 14 | 17 | 556 | 22 | 570 | 1.23e-63 | 219 |
| MS.gene42235.t1 | MTR_5g092900 | 44.167 | 120 | 32 | 3 | 371 | 490 | 32 | 116 | 3.78e-17 | 77.8 |
| MS.gene42235.t1 | MTR_4g007850 | 34.868 | 152 | 96 | 3 | 408 | 556 | 364 | 515 | 2.13e-14 | 76.3 |
| MS.gene42235.t1 | MTR_1g069845 | 29.268 | 246 | 161 | 7 | 237 | 477 | 363 | 600 | 3.20e-14 | 75.9 |
| MS.gene42235.t1 | MTR_1g069845 | 29.268 | 246 | 161 | 7 | 237 | 477 | 480 | 717 | 3.26e-14 | 76.3 |
| MS.gene42235.t1 | MTR_1g069845 | 29.268 | 246 | 161 | 7 | 237 | 477 | 484 | 721 | 3.51e-14 | 76.3 |
| MS.gene42235.t1 | MTR_7g078330 | 27.941 | 272 | 188 | 6 | 167 | 433 | 378 | 646 | 1.91e-13 | 73.6 |
| MS.gene42235.t1 | MTR_1g018180 | 24.675 | 308 | 189 | 8 | 156 | 461 | 61 | 327 | 4.26e-13 | 71.2 |
| MS.gene42235.t1 | MTR_3g466220 | 26.198 | 313 | 184 | 6 | 156 | 465 | 553 | 821 | 4.97e-13 | 72.4 |
| MS.gene42235.t1 | MTR_3g466220 | 26.198 | 313 | 184 | 6 | 156 | 465 | 532 | 800 | 7.18e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42235.t1 | AT2G45720 | 66.302 | 549 | 175 | 2 | 12 | 560 | 15 | 553 | 0.0 | 746 |
| MS.gene42235.t1 | AT2G45720 | 66.302 | 549 | 175 | 2 | 12 | 560 | 15 | 553 | 0.0 | 746 |
| MS.gene42235.t1 | AT2G45720 | 66.302 | 549 | 175 | 2 | 12 | 560 | 15 | 553 | 0.0 | 746 |
| MS.gene42235.t1 | AT2G45720 | 66.302 | 549 | 175 | 2 | 12 | 560 | 15 | 553 | 0.0 | 746 |
| MS.gene42235.t1 | AT2G45720 | 66.302 | 549 | 175 | 2 | 12 | 560 | 15 | 553 | 0.0 | 746 |
| MS.gene42235.t1 | AT1G01830 | 63.357 | 554 | 195 | 4 | 8 | 559 | 27 | 574 | 0.0 | 672 |
| MS.gene42235.t1 | AT1G01830 | 63.357 | 554 | 195 | 4 | 8 | 559 | 27 | 574 | 0.0 | 672 |
| MS.gene42235.t1 | AT1G01830 | 63.357 | 554 | 195 | 4 | 8 | 559 | 27 | 574 | 0.0 | 672 |
| MS.gene42235.t1 | AT5G50900 | 37.341 | 549 | 324 | 8 | 22 | 559 | 15 | 554 | 3.69e-104 | 325 |
| MS.gene42235.t1 | AT1G61350 | 30.182 | 550 | 341 | 14 | 35 | 556 | 32 | 566 | 3.14e-64 | 220 |
| MS.gene42235.t1 | AT2G05810 | 33.519 | 540 | 335 | 14 | 34 | 557 | 41 | 572 | 4.78e-52 | 187 |
| MS.gene42235.t1 | AT2G05810 | 33.519 | 540 | 335 | 14 | 34 | 557 | 41 | 572 | 4.78e-52 | 187 |
| MS.gene42235.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 543 | 815 | 3.91e-17 | 85.5 |
| MS.gene42235.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 543 | 815 | 3.91e-17 | 85.5 |
| MS.gene42235.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 546 | 818 | 4.13e-17 | 85.5 |
| MS.gene42235.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 354 | 626 | 6.98e-17 | 84.7 |
| MS.gene42235.t1 | AT2G23140 | 26.498 | 317 | 186 | 6 | 156 | 469 | 354 | 626 | 6.98e-17 | 84.7 |
| MS.gene42235.t1 | AT3G54790 | 30.466 | 279 | 175 | 9 | 206 | 479 | 454 | 718 | 2.47e-16 | 82.8 |
| MS.gene42235.t1 | AT3G54790 | 30.466 | 279 | 175 | 9 | 206 | 479 | 490 | 754 | 3.93e-16 | 82.4 |
| MS.gene42235.t1 | AT3G54790 | 30.466 | 279 | 175 | 9 | 206 | 479 | 490 | 754 | 3.93e-16 | 82.4 |
| MS.gene42235.t1 | AT3G46510 | 26.298 | 289 | 201 | 5 | 154 | 435 | 352 | 635 | 3.24e-12 | 69.7 |
| MS.gene42235.t1 | AT2G28830 | 27.304 | 293 | 197 | 7 | 153 | 435 | 282 | 568 | 3.60e-12 | 69.3 |
| MS.gene42235.t1 | AT1G71020 | 26.740 | 273 | 191 | 5 | 156 | 423 | 195 | 463 | 3.29e-11 | 66.2 |
| MS.gene42235.t1 | AT1G71020 | 26.740 | 273 | 191 | 5 | 156 | 423 | 343 | 611 | 4.84e-11 | 65.9 |
| MS.gene42235.t1 | AT3G01400 | 26.923 | 286 | 190 | 10 | 152 | 424 | 56 | 335 | 7.13e-11 | 64.3 |
Find 101 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGAGGTGAGACAGATTT+TGG | 0.191099 | 7.3:+29571730 | MS.gene42235:CDS |
| GATAAAGCAAAAGAGGTTAA+AGG | 0.250953 | 7.3:+29570891 | MS.gene42235:CDS |
| TGATAAAAGTGTGCCTAATT+TGG | 0.258642 | 7.3:+29572249 | MS.gene42235:CDS |
| ACATTCTGCTGCATATTCTT+TGG | 0.259181 | 7.3:-29571813 | None:intergenic |
| TCAAGTAACTGAACCAAATT+AGG | 0.283449 | 7.3:-29572262 | None:intergenic |
| GGATGCATTAATCGGGAAAA+TGG | 0.303126 | 7.3:+29571124 | MS.gene42235:CDS |
| GATAAGTTTGATAACATTGA+TGG | 0.317226 | 7.3:-29570960 | None:intergenic |
| ATGATCTCATATGGTGCTAT+TGG | 0.322689 | 7.3:+29572367 | MS.gene42235:CDS |
| AGTCGCAGCGTTAAGGAATT+TGG | 0.341238 | 7.3:+29571946 | MS.gene42235:CDS |
| TTTGCTTTATCAAGAGCAAT+AGG | 0.341641 | 7.3:-29570879 | None:intergenic |
| CTTATAAGACTTGTTGAATC+AGG | 0.347476 | 7.3:+29571530 | MS.gene42235:CDS |
| TTAACTTGTGGAATGTTGTT+AGG | 0.364935 | 7.3:+29571788 | MS.gene42235:CDS |
| TTGTATTGGAAGGCGGTGTT+AGG | 0.365857 | 7.3:+29571879 | MS.gene42235:CDS |
| TTAAATGCGTCTTCCGTGTC+AGG | 0.372955 | 7.3:+29571212 | MS.gene42235:CDS |
| GCTAGGATTTCTTCCTCGTT+TGG | 0.374743 | 7.3:+29572000 | MS.gene42235:CDS |
| GGGAAATTAAGAAGTTTGTT+TGG | 0.376831 | 7.3:+29572457 | MS.gene42235:CDS |
| TTGGTTCACGTGTTGAAATC+CGG | 0.379042 | 7.3:+29572019 | MS.gene42235:CDS |
| TATATGCTCGCTAGCCGAAT+CGG | 0.388263 | 7.3:+29571463 | MS.gene42235:CDS |
| AGAAGATGAAAAGAATGTTT+TGG | 0.395867 | 7.3:+29571355 | MS.gene42235:CDS |
| AGTGATCTGGATGCATTAAT+CGG | 0.402558 | 7.3:+29571116 | MS.gene42235:CDS |
| ACATGGTGGCGTTTGTCCTT+TGG | 0.402833 | 7.3:+29571634 | MS.gene42235:CDS |
| AAATATGCAGTTACATGCCT+TGG | 0.403305 | 7.3:+29572310 | MS.gene42235:CDS |
| TTGGTTGAGCTTTGTCGAAC+CGG | 0.410474 | 7.3:+29571653 | MS.gene42235:CDS |
| TCTTTGCAAGGAGCAATTGC+AGG | 0.411441 | 7.3:+29571010 | MS.gene42235:CDS |
| TGCTCTTGATAAAGCAAAAG+AGG | 0.413222 | 7.3:+29570884 | MS.gene42235:CDS |
| CAGGAGCAACATTGCTGCAC+TGG | 0.435703 | 7.3:+29571388 | MS.gene42235:CDS |
| ACTTCAGATGCAGAGTGATC+TGG | 0.435997 | 7.3:+29571103 | MS.gene42235:CDS |
| ATATACTTTCAACAGAAGAT+TGG | 0.437674 | 7.3:+29570832 | MS.gene42235:CDS |
| TACATGAGAGATTGGAAAGA+GGG | 0.441315 | 7.3:+29572437 | MS.gene42235:CDS |
| CAGTAGCCCACAACAACATA+AGG | 0.443924 | 7.3:+29571255 | MS.gene42235:CDS |
| ATATGCTCGCTAGCCGAATC+GGG | 0.444293 | 7.3:+29571464 | MS.gene42235:CDS |
| AATCTGCAGTCGCAGCGTTA+AGG | 0.448445 | 7.3:+29571939 | MS.gene42235:CDS |
| AGAAGCGAAGCACAAAGCTT+TGG | 0.451007 | 7.3:+29571310 | MS.gene42235:CDS |
| GTGTTGAAATCCGGCTCCCC+AGG | 0.465743 | 7.3:+29572028 | MS.gene42235:CDS |
| GTAACTCCCTTATGTTGTTG+TGG | 0.467574 | 7.3:-29571262 | None:intergenic |
| TAACTCCCTTATGTTGTTGT+GGG | 0.470411 | 7.3:-29571261 | None:intergenic |
| TTGATCAGAACTGGTATGCT+TGG | 0.472449 | 7.3:+29571173 | MS.gene42235:CDS |
| ATGATCAATTTGTTAACTTG+TGG | 0.475541 | 7.3:+29571776 | MS.gene42235:CDS |
| CTCAAAGAATGCTCTTTGCA+AGG | 0.480769 | 7.3:+29570998 | MS.gene42235:CDS |
| CAGCGTTAAGGAATTTGGTC+AGG | 0.483288 | 7.3:+29571951 | MS.gene42235:CDS |
| GACACGGAAGACGCATTTAA+CGG | 0.483292 | 7.3:-29571209 | None:intergenic |
| GCGTTGTCGAAGTCGCTTGA+AGG | 0.483797 | 7.3:+29571032 | MS.gene42235:CDS |
| AACAAGGATAAGAGAGAAAA+CGG | 0.487702 | 7.3:+29571433 | MS.gene42235:CDS |
| ATCAAAATCATGGTGGAAGA+TGG | 0.488379 | 7.3:+29570798 | None:intergenic |
| CTTCTAAGTGACCGATCTGA+AGG | 0.491857 | 7.3:-29571292 | None:intergenic |
| AAGAAGCTAATGATCTCATA+TGG | 0.492681 | 7.3:+29572358 | MS.gene42235:CDS |
| AACCGGCGATTCTGTTTCGC+AGG | 0.502115 | 7.3:+29571670 | MS.gene42235:CDS |
| GCCAAAATCTGTCTCACCTC+AGG | 0.503593 | 7.3:-29571731 | None:intergenic |
| ATCCTCGCAGCTACCCGATT+CGG | 0.503854 | 7.3:-29571477 | None:intergenic |
| TTTGAAGAAACTTACTGAGA+TGG | 0.503997 | 7.3:+29572393 | MS.gene42235:CDS |
| AACAACATAAGGGAGTTACT+TGG | 0.506206 | 7.3:+29571266 | MS.gene42235:CDS |
| GATTTGAATTTACGAGATTG+TGG | 0.508625 | 7.3:+29571146 | MS.gene42235:CDS |
| AACAAGGAGAGGAATGCAAC+CGG | 0.520728 | 7.3:-29572125 | None:intergenic |
| ACTGCAGATTCTTGAGGAAG+TGG | 0.523180 | 7.3:-29571926 | None:intergenic |
| GATTCAACAAGTCTTATAAG+AGG | 0.524542 | 7.3:-29571527 | None:intergenic |
| AATCGGGTAGCTGCGAGGAT+TGG | 0.524824 | 7.3:+29571480 | MS.gene42235:CDS |
| AGAGCATTCTTTGAGAAACA+TGG | 0.525223 | 7.3:-29570990 | None:intergenic |
| TAATAGAAGAGAAGTTAAGA+AGG | 0.531726 | 7.3:+29572225 | MS.gene42235:CDS |
| AGCTTTGGACAGTGTTGTTG+AGG | 0.533166 | 7.3:+29571325 | MS.gene42235:CDS |
| TTACATGAGAGATTGGAAAG+AGG | 0.535319 | 7.3:+29572436 | MS.gene42235:CDS |
| GTTACAAAGGTTATCAATGT+CGG | 0.540691 | 7.3:+29571586 | MS.gene42235:CDS |
| GTGATCTGGATGCATTAATC+GGG | 0.542255 | 7.3:+29571117 | MS.gene42235:CDS |
| AGATTGGTTGTTACATGCAA+AGG | 0.544625 | 7.3:+29570848 | MS.gene42235:CDS |
| GAGACAGCTTTGATTTCGCT+AGG | 0.547390 | 7.3:+29571983 | MS.gene42235:CDS |
| AAGTGCTGTAGGTAAAGAAA+AGG | 0.552308 | 7.3:+29571553 | MS.gene42235:CDS |
| TCTCCTTGTTAAGATGCTTG+AGG | 0.557290 | 7.3:+29572138 | MS.gene42235:CDS |
| TTTCTGTCGAGCTGCTAACT+CGG | 0.563543 | 7.3:-29572081 | None:intergenic |
| GTTGAATCAGGAAGTGCTGT+AGG | 0.569401 | 7.3:+29571542 | MS.gene42235:CDS |
| TCGCGTGAAATCGTCGGACA+TGG | 0.579937 | 7.3:+29571617 | MS.gene42235:CDS |
| GTTAAGGAATTTGGTCAGGT+CGG | 0.582359 | 7.3:+29571955 | MS.gene42235:CDS |
| GAGGATTGGCTAGTTTCTGA+AGG | 0.584950 | 7.3:+29571494 | MS.gene42235:CDS |
| AGTAGCCCACAACAACATAA+GGG | 0.590757 | 7.3:+29571256 | MS.gene42235:CDS |
| CATTCTTTGAGAAACATGGA+TGG | 0.592010 | 7.3:-29570986 | None:intergenic |
| TCAACAAGTCTTATAAGAGG+TGG | 0.596638 | 7.3:-29571524 | None:intergenic |
| TAACCTTTGTAACGATATTG+CGG | 0.602955 | 7.3:-29571576 | None:intergenic |
| TGGCTCAAGAAGGGATTGTG+AGG | 0.604275 | 7.3:+29571750 | MS.gene42235:CDS |
| GACTCTCATTGCTTGCAGTG+AGG | 0.605442 | 7.3:-29571844 | None:intergenic |
| AGCCTGCGAAACAGAATCGC+CGG | 0.607149 | 7.3:-29571672 | None:intergenic |
| TCAAGCATCTTAACAAGGAG+AGG | 0.608112 | 7.3:-29572136 | None:intergenic |
| AGTCTCTTAGCATATCTTGA+CGG | 0.608560 | 7.3:+29571902 | MS.gene42235:CDS |
| ACAACATAAGGGAGTTACTT+GGG | 0.609233 | 7.3:+29571267 | MS.gene42235:CDS |
| TTACTTGGGCGCCTTCAGAT+CGG | 0.610935 | 7.3:+29571281 | MS.gene42235:CDS |
| GGCTCAAGAAGGGATTGTGA+GGG | 0.611614 | 7.3:+29571751 | MS.gene42235:CDS |
| AGGCCGCAATATCGTTACAA+AGG | 0.614068 | 7.3:+29571573 | MS.gene42235:CDS |
| GAATATTTCAGCTGTTCCTG+AGG | 0.614185 | 7.3:+29571715 | MS.gene42235:CDS |
| TTCTGTCGCAGAACCTGACA+CGG | 0.614968 | 7.3:-29571225 | None:intergenic |
| AAAAGTGTTGTATTGGAAGG+CGG | 0.617637 | 7.3:+29571872 | MS.gene42235:CDS |
| GCTGCGACTGCAGATTCTTG+AGG | 0.624141 | 7.3:-29571932 | None:intergenic |
| TCGGCAGATTGCTGACGCAG+CGG | 0.628367 | 7.3:-29572062 | None:intergenic |
| TTCAACACGTGAACCAAACG+AGG | 0.632931 | 7.3:-29572013 | None:intergenic |
| GAAACATCGCGTGAAATCGT+CGG | 0.634754 | 7.3:+29571611 | MS.gene42235:CDS |
| TACTTGAAGAAATCAATCCA+AGG | 0.635931 | 7.3:-29572327 | None:intergenic |
| TAGCCTCAAGCATCTTAACA+AGG | 0.636140 | 7.3:-29572141 | None:intergenic |
| TGTGTGAAGGAGAAGTATGA+AGG | 0.638552 | 7.3:+29571077 | MS.gene42235:CDS |
| CAGAACTGGTATGCTTGGCG+AGG | 0.641538 | 7.3:+29571178 | MS.gene42235:CDS |
| ATCAGCTGAATTGTGTGTGA+AGG | 0.643275 | 7.3:+29571064 | MS.gene42235:CDS |
| CTTACTGAGATGGATACTCC+AGG | 0.657141 | 7.3:+29572403 | MS.gene42235:CDS |
| AGCCGAATCGGGTAGCTGCG+AGG | 0.659711 | 7.3:+29571475 | MS.gene42235:CDS |
| CGTGAAATCGTCGGACATGG+TGG | 0.660194 | 7.3:+29571620 | MS.gene42235:CDS |
| GTTCGACAAAGCTCAACCAA+AGG | 0.661790 | 7.3:-29571650 | None:intergenic |
| TACTTACAGCAACATCAACA+AGG | 0.680317 | 7.3:+29571417 | MS.gene42235:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTGCATTGTTTTG+AGG | - | chr7.3:29572295-29572314 | None:intergenic | 20.0% |
| !!! | TCTAAAAAAAAGTGTTGTAT+TGG | + | chr7.3:29571865-29571884 | MS.gene42235:CDS | 20.0% |
| ! | ACAGAAATGAAAAAATTGGT+CGG | + | chr7.3:29572097-29572116 | MS.gene42235:CDS | 25.0% |
| ! | ATATACTTTCAACAGAAGAT+TGG | + | chr7.3:29570832-29570851 | MS.gene42235:CDS | 25.0% |
| ! | TAAAAAGTTACATGAGAGAT+TGG | + | chr7.3:29572429-29572448 | MS.gene42235:CDS | 25.0% |
| ! | TAATAGAAGAGAAGTTAAGA+AGG | + | chr7.3:29572225-29572244 | MS.gene42235:CDS | 25.0% |
| !! | AGAAGATGAAAAGAATGTTT+TGG | + | chr7.3:29571355-29571374 | MS.gene42235:CDS | 25.0% |
| !! | GATAAGTTTGATAACATTGA+TGG | - | chr7.3:29570963-29570982 | None:intergenic | 25.0% |
| !!! | AAAAAAAGTGTTGTATTGGA+AGG | + | chr7.3:29571869-29571888 | MS.gene42235:CDS | 25.0% |
| !!! | ATGATCAATTTGTTAACTTG+TGG | + | chr7.3:29571776-29571795 | MS.gene42235:CDS | 25.0% |
| AACAAGGATAAGAGAGAAAA+CGG | + | chr7.3:29571433-29571452 | MS.gene42235:CDS | 30.0% | |
| AAGAAGCTAATGATCTCATA+TGG | + | chr7.3:29572358-29572377 | MS.gene42235:CDS | 30.0% | |
| CTCGACAGAAATGAAAAAAT+TGG | + | chr7.3:29572093-29572112 | MS.gene42235:CDS | 30.0% | |
| GATAAAGCAAAAGAGGTTAA+AGG | + | chr7.3:29570891-29570910 | MS.gene42235:CDS | 30.0% | |
| GATTTGAATTTACGAGATTG+TGG | + | chr7.3:29571146-29571165 | MS.gene42235:CDS | 30.0% | |
| GTTACAAAGGTTATCAATGT+CGG | + | chr7.3:29571586-29571605 | MS.gene42235:CDS | 30.0% | |
| TAACCTTTGTAACGATATTG+CGG | - | chr7.3:29571579-29571598 | None:intergenic | 30.0% | |
| TACTTGAAGAAATCAATCCA+AGG | - | chr7.3:29572330-29572349 | None:intergenic | 30.0% | |
| TCAAGTAACTGAACCAAATT+AGG | - | chr7.3:29572265-29572284 | None:intergenic | 30.0% | |
| TTTGAAGAAACTTACTGAGA+TGG | + | chr7.3:29572393-29572412 | MS.gene42235:CDS | 30.0% | |
| TTTGCTTTATCAAGAGCAAT+AGG | - | chr7.3:29570882-29570901 | None:intergenic | 30.0% | |
| ! | ATGATCATTTTCCATCTAGT+AGG | - | chr7.3:29570921-29570940 | None:intergenic | 30.0% |
| ! | GATTCAACAAGTCTTATAAG+AGG | - | chr7.3:29571530-29571549 | None:intergenic | 30.0% |
| ! | GGGAAATTAAGAAGTTTGTT+TGG | + | chr7.3:29572457-29572476 | MS.gene42235:CDS | 30.0% |
| ! | TGATAAAAGTGTGCCTAATT+TGG | + | chr7.3:29572249-29572268 | MS.gene42235:CDS | 30.0% |
| ! | TTAAAGGTTTTCCTACTAGA+TGG | + | chr7.3:29570907-29570926 | MS.gene42235:CDS | 30.0% |
| !! | CTTATAAGACTTGTTGAATC+AGG | + | chr7.3:29571530-29571549 | MS.gene42235:CDS | 30.0% |
| !! | TTAACTTGTGGAATGTTGTT+AGG | + | chr7.3:29571788-29571807 | MS.gene42235:CDS | 30.0% |
| AAATATGCAGTTACATGCCT+TGG | + | chr7.3:29572310-29572329 | MS.gene42235:CDS | 35.0% | |
| AACAACATAAGGGAGTTACT+TGG | + | chr7.3:29571266-29571285 | MS.gene42235:CDS | 35.0% | |
| ACAACATAAGGGAGTTACTT+GGG | + | chr7.3:29571267-29571286 | MS.gene42235:CDS | 35.0% | |
| ACATTCTGCTGCATATTCTT+TGG | - | chr7.3:29571816-29571835 | None:intergenic | 35.0% | |
| AGTCTCTTAGCATATCTTGA+CGG | + | chr7.3:29571902-29571921 | MS.gene42235:CDS | 35.0% | |
| AGTGATCTGGATGCATTAAT+CGG | + | chr7.3:29571116-29571135 | MS.gene42235:CDS | 35.0% | |
| TAACTCCCTTATGTTGTTGT+GGG | - | chr7.3:29571264-29571283 | None:intergenic | 35.0% | |
| TACATGAGAGATTGGAAAGA+GGG | + | chr7.3:29572437-29572456 | MS.gene42235:CDS | 35.0% | |
| TACTTACAGCAACATCAACA+AGG | + | chr7.3:29571417-29571436 | MS.gene42235:CDS | 35.0% | |
| TGCTCTTGATAAAGCAAAAG+AGG | + | chr7.3:29570884-29570903 | MS.gene42235:CDS | 35.0% | |
| TTACATGAGAGATTGGAAAG+AGG | + | chr7.3:29572436-29572455 | MS.gene42235:CDS | 35.0% | |
| ! | AAGTGCTGTAGGTAAAGAAA+AGG | + | chr7.3:29571553-29571572 | MS.gene42235:CDS | 35.0% |
| ! | AGAGCATTCTTTGAGAAACA+TGG | - | chr7.3:29570993-29571012 | None:intergenic | 35.0% |
| ! | AGATTGGTTGTTACATGCAA+AGG | + | chr7.3:29570848-29570867 | MS.gene42235:CDS | 35.0% |
| ! | CATTCTTTGAGAAACATGGA+TGG | - | chr7.3:29570989-29571008 | None:intergenic | 35.0% |
| ! | TCAACAAGTCTTATAAGAGG+TGG | - | chr7.3:29571527-29571546 | None:intergenic | 35.0% |
| !! | AAAAGTGTTGTATTGGAAGG+CGG | + | chr7.3:29571872-29571891 | MS.gene42235:CDS | 35.0% |
| !! | ATGATCTCATATGGTGCTAT+TGG | + | chr7.3:29572367-29572386 | MS.gene42235:CDS | 35.0% |
| !! | TCATGTAACTTTTTAGCACC+TGG | - | chr7.3:29572424-29572443 | None:intergenic | 35.0% |
| !!! | ATGTTTTGGCTGTTTTTAGC+AGG | + | chr7.3:29571369-29571388 | MS.gene42235:CDS | 35.0% |
| !!! | TTTGCATTGTTTTGAGGACT+AGG | - | chr7.3:29572289-29572308 | None:intergenic | 35.0% |
| AGTAGCCCACAACAACATAA+GGG | + | chr7.3:29571256-29571275 | MS.gene42235:CDS | 40.0% | |
| ATCAGCTGAATTGTGTGTGA+AGG | + | chr7.3:29571064-29571083 | MS.gene42235:CDS | 40.0% | |
| CTCAAAGAATGCTCTTTGCA+AGG | + | chr7.3:29570998-29571017 | MS.gene42235:CDS | 40.0% | |
| GAATATTTCAGCTGTTCCTG+AGG | + | chr7.3:29571715-29571734 | MS.gene42235:CDS | 40.0% | |
| GGATGCATTAATCGGGAAAA+TGG | + | chr7.3:29571124-29571143 | MS.gene42235:CDS | 40.0% | |
| GTAACTCCCTTATGTTGTTG+TGG | - | chr7.3:29571265-29571284 | None:intergenic | 40.0% | |
| GTGATCTGGATGCATTAATC+GGG | + | chr7.3:29571117-29571136 | MS.gene42235:CDS | 40.0% | |
| GTTAAGGAATTTGGTCAGGT+CGG | + | chr7.3:29571955-29571974 | MS.gene42235:CDS | 40.0% | |
| TAGCCTCAAGCATCTTAACA+AGG | - | chr7.3:29572144-29572163 | None:intergenic | 40.0% | |
| TCAAGCATCTTAACAAGGAG+AGG | - | chr7.3:29572139-29572158 | None:intergenic | 40.0% | |
| TCTCCTTGTTAAGATGCTTG+AGG | + | chr7.3:29572138-29572157 | MS.gene42235:CDS | 40.0% | |
| TTGATCAGAACTGGTATGCT+TGG | + | chr7.3:29571173-29571192 | MS.gene42235:CDS | 40.0% | |
| TTGGTTCACGTGTTGAAATC+CGG | + | chr7.3:29572019-29572038 | MS.gene42235:CDS | 40.0% | |
| ! | TGTGGACTTTTGATCAGAAC+TGG | + | chr7.3:29571164-29571183 | MS.gene42235:CDS | 40.0% |
| ! | TGTGTGAAGGAGAAGTATGA+AGG | + | chr7.3:29571077-29571096 | MS.gene42235:CDS | 40.0% |
| !!! | AGACAGATTTTGGCTCAAGA+AGG | + | chr7.3:29571740-29571759 | MS.gene42235:CDS | 40.0% |
| !!! | GACAGATTTTGGCTCAAGAA+GGG | + | chr7.3:29571741-29571760 | MS.gene42235:CDS | 40.0% |
| AAAAAATTGGTCGGCGAAGC+CGG | + | chr7.3:29572106-29572125 | MS.gene42235:CDS | 45.0% | |
| AACAAGGAGAGGAATGCAAC+CGG | - | chr7.3:29572128-29572147 | None:intergenic | 45.0% | |
| ACTGCAGATTCTTGAGGAAG+TGG | - | chr7.3:29571929-29571948 | None:intergenic | 45.0% | |
| ACTTCAGATGCAGAGTGATC+TGG | + | chr7.3:29571103-29571122 | MS.gene42235:CDS | 45.0% | |
| AGAAGCGAAGCACAAAGCTT+TGG | + | chr7.3:29571310-29571329 | MS.gene42235:CDS | 45.0% | |
| AGGCCGCAATATCGTTACAA+AGG | + | chr7.3:29571573-29571592 | MS.gene42235:CDS | 45.0% | |
| AGTCGCAGCGTTAAGGAATT+TGG | + | chr7.3:29571946-29571965 | MS.gene42235:CDS | 45.0% | |
| CAGCGTTAAGGAATTTGGTC+AGG | + | chr7.3:29571951-29571970 | MS.gene42235:CDS | 45.0% | |
| CAGTAGCCCACAACAACATA+AGG | + | chr7.3:29571255-29571274 | MS.gene42235:CDS | 45.0% | |
| CTTACTGAGATGGATACTCC+AGG | + | chr7.3:29572403-29572422 | MS.gene42235:CDS | 45.0% | |
| CTTCTAAGTGACCGATCTGA+AGG | - | chr7.3:29571295-29571314 | None:intergenic | 45.0% | |
| GAAACATCGCGTGAAATCGT+CGG | + | chr7.3:29571611-29571630 | MS.gene42235:CDS | 45.0% | |
| GACACGGAAGACGCATTTAA+CGG | - | chr7.3:29571212-29571231 | None:intergenic | 45.0% | |
| GCTAGGATTTCTTCCTCGTT+TGG | + | chr7.3:29572000-29572019 | MS.gene42235:CDS | 45.0% | |
| GTTCGACAAAGCTCAACCAA+AGG | - | chr7.3:29571653-29571672 | None:intergenic | 45.0% | |
| TATATGCTCGCTAGCCGAAT+CGG | + | chr7.3:29571463-29571482 | MS.gene42235:CDS | 45.0% | |
| TCTTTGCAAGGAGCAATTGC+AGG | + | chr7.3:29571010-29571029 | MS.gene42235:CDS | 45.0% | |
| TTAAATGCGTCTTCCGTGTC+AGG | + | chr7.3:29571212-29571231 | MS.gene42235:CDS | 45.0% | |
| TTCAACACGTGAACCAAACG+AGG | - | chr7.3:29572016-29572035 | None:intergenic | 45.0% | |
| TTGTATTGGAAGGCGGTGTT+AGG | + | chr7.3:29571879-29571898 | MS.gene42235:CDS | 45.0% | |
| TTTCTGTCGAGCTGCTAACT+CGG | - | chr7.3:29572084-29572103 | None:intergenic | 45.0% | |
| ! | GAGACAGCTTTGATTTCGCT+AGG | + | chr7.3:29571983-29572002 | MS.gene42235:CDS | 45.0% |
| ! | TCCTGAGGTGAGACAGATTT+TGG | + | chr7.3:29571730-29571749 | MS.gene42235:CDS | 45.0% |
| ! | TTGGTTGAGCTTTGTCGAAC+CGG | + | chr7.3:29571653-29571672 | MS.gene42235:CDS | 45.0% |
| !! | AGCTTTGGACAGTGTTGTTG+AGG | + | chr7.3:29571325-29571344 | MS.gene42235:CDS | 45.0% |
| !! | GAGGATTGGCTAGTTTCTGA+AGG | + | chr7.3:29571494-29571513 | MS.gene42235:CDS | 45.0% |
| !! | GTTGAATCAGGAAGTGCTGT+AGG | + | chr7.3:29571542-29571561 | MS.gene42235:CDS | 45.0% |
| AATCTGCAGTCGCAGCGTTA+AGG | + | chr7.3:29571939-29571958 | MS.gene42235:CDS | 50.0% | |
| ATATGCTCGCTAGCCGAATC+GGG | + | chr7.3:29571464-29571483 | MS.gene42235:CDS | 50.0% | |
| GACTCTCATTGCTTGCAGTG+AGG | - | chr7.3:29571847-29571866 | None:intergenic | 50.0% | |
| GCCAAAATCTGTCTCACCTC+AGG | - | chr7.3:29571734-29571753 | None:intergenic | 50.0% | |
| GGCTCAAGAAGGGATTGTGA+GGG | + | chr7.3:29571751-29571770 | MS.gene42235:CDS | 50.0% | |
| TGGCTCAAGAAGGGATTGTG+AGG | + | chr7.3:29571750-29571769 | MS.gene42235:CDS | 50.0% | |
| TTACTTGGGCGCCTTCAGAT+CGG | + | chr7.3:29571281-29571300 | MS.gene42235:CDS | 50.0% | |
| TTCTGTCGCAGAACCTGACA+CGG | - | chr7.3:29571228-29571247 | None:intergenic | 50.0% | |
| ! | ACATGGTGGCGTTTGTCCTT+TGG | + | chr7.3:29571634-29571653 | MS.gene42235:CDS | 50.0% |
| AACCGGCGATTCTGTTTCGC+AGG | + | chr7.3:29571670-29571689 | MS.gene42235:CDS | 55.0% | |
| AATCGGGTAGCTGCGAGGAT+TGG | + | chr7.3:29571480-29571499 | MS.gene42235:CDS | 55.0% | |
| AGCCTGCGAAACAGAATCGC+CGG | - | chr7.3:29571675-29571694 | None:intergenic | 55.0% | |
| ATCCTCGCAGCTACCCGATT+CGG | - | chr7.3:29571480-29571499 | None:intergenic | 55.0% | |
| CAGAACTGGTATGCTTGGCG+AGG | + | chr7.3:29571178-29571197 | MS.gene42235:CDS | 55.0% | |
| CAGGAGCAACATTGCTGCAC+TGG | + | chr7.3:29571388-29571407 | MS.gene42235:CDS | 55.0% | |
| CGTGAAATCGTCGGACATGG+TGG | + | chr7.3:29571620-29571639 | MS.gene42235:CDS | 55.0% | |
| GCGTTGTCGAAGTCGCTTGA+AGG | + | chr7.3:29571032-29571051 | MS.gene42235:CDS | 55.0% | |
| GCTGCGACTGCAGATTCTTG+AGG | - | chr7.3:29571935-29571954 | None:intergenic | 55.0% | |
| TCGCGTGAAATCGTCGGACA+TGG | + | chr7.3:29571617-29571636 | MS.gene42235:CDS | 55.0% | |
| ! | AGCGGCATTTTGTGCTCCTG+GGG | - | chr7.3:29572047-29572066 | None:intergenic | 55.0% |
| ! | ATTTTGTGCTCCTGGGGAGC+CGG | - | chr7.3:29572041-29572060 | None:intergenic | 55.0% |
| ! | CAGCGGCATTTTGTGCTCCT+GGG | - | chr7.3:29572048-29572067 | None:intergenic | 55.0% |
| GTGTTGAAATCCGGCTCCCC+AGG | + | chr7.3:29572028-29572047 | MS.gene42235:CDS | 60.0% | |
| TCGGCAGATTGCTGACGCAG+CGG | - | chr7.3:29572065-29572084 | None:intergenic | 60.0% | |
| ! | GCAGCGGCATTTTGTGCTCC+TGG | - | chr7.3:29572049-29572068 | None:intergenic | 60.0% |
| AGCCGAATCGGGTAGCTGCG+AGG | + | chr7.3:29571475-29571494 | MS.gene42235:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 29570807 | 29572489 | 29570807 | ID=MS.gene42235 |
| chr7.3 | mRNA | 29570807 | 29572489 | 29570807 | ID=MS.gene42235.t1;Parent=MS.gene42235 |
| chr7.3 | exon | 29570807 | 29572489 | 29570807 | ID=MS.gene42235.t1.exon1;Parent=MS.gene42235.t1 |
| chr7.3 | CDS | 29570807 | 29572489 | 29570807 | ID=cds.MS.gene42235.t1;Parent=MS.gene42235.t1 |
| Gene Sequence |
| Protein sequence |
