Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42624.t1 | XP_024635031.1 | 92.4 | 341 | 23 | 2 | 1 | 338 | 1 | 341 | 2.50E-185 | 657.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42624.t1 | Q9S7X6 | 72.3 | 336 | 93 | 0 | 1 | 336 | 1 | 336 | 3.5e-143 | 509.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42624.t1 | G7J8E3 | 90.0 | 339 | 24 | 2 | 1 | 338 | 1 | 330 | 1.3e-178 | 635.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013613 | MS.gene42624 | PPI |
| MS.gene42624 | MS.gene80283 | PPI |
| MS.gene038589 | MS.gene42624 | PPI |
| MS.gene42624 | MS.gene06954 | PPI |
| MS.gene027622 | MS.gene42624 | PPI |
| MS.gene45048 | MS.gene42624 | PPI |
| MS.gene42624 | MS.gene06736 | PPI |
| MS.gene42624 | MS.gene038590 | PPI |
| MS.gene009124 | MS.gene42624 | PPI |
| MS.gene65617 | MS.gene42624 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42624.t1 | MTR_3g104960 | 89.971 | 339 | 24 | 2 | 1 | 338 | 1 | 330 | 0.0 | 629 |
| MS.gene42624.t1 | MTR_1g015300 | 76.716 | 335 | 77 | 1 | 1 | 335 | 1 | 334 | 0.0 | 551 |
| MS.gene42624.t1 | MTR_5g006140 | 62.462 | 333 | 117 | 4 | 1 | 333 | 1 | 325 | 1.19e-153 | 434 |
| MS.gene42624.t1 | MTR_5g006140 | 64.794 | 267 | 86 | 4 | 1 | 267 | 1 | 259 | 1.54e-127 | 365 |
| MS.gene42624.t1 | MTR_5g034470 | 32.677 | 254 | 154 | 9 | 27 | 271 | 46 | 291 | 1.48e-36 | 135 |
| MS.gene42624.t1 | MTR_5g034470 | 33.772 | 228 | 143 | 6 | 47 | 271 | 69 | 291 | 1.80e-36 | 134 |
| MS.gene42624.t1 | MTR_8g063940 | 30.597 | 268 | 168 | 10 | 17 | 275 | 36 | 294 | 1.26e-35 | 132 |
| MS.gene42624.t1 | MTR_3g091090 | 31.579 | 228 | 148 | 6 | 47 | 271 | 83 | 305 | 1.08e-23 | 100 |
| MS.gene42624.t1 | MTR_3g078190 | 34.266 | 143 | 93 | 1 | 50 | 191 | 61 | 203 | 1.12e-22 | 97.1 |
| MS.gene42624.t1 | MTR_1g028360 | 31.278 | 227 | 149 | 5 | 47 | 271 | 88 | 309 | 1.24e-21 | 94.7 |
| MS.gene42624.t1 | MTR_3g032400 | 72.727 | 44 | 9 | 1 | 280 | 320 | 1 | 44 | 1.56e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42624.t1 | AT5G19530 | 72.321 | 336 | 93 | 0 | 1 | 336 | 1 | 336 | 0.0 | 509 |
| MS.gene42624.t1 | AT5G19530 | 72.644 | 329 | 90 | 0 | 8 | 336 | 1 | 329 | 7.40e-180 | 501 |
| MS.gene42624.t1 | AT1G23820 | 34.667 | 225 | 139 | 6 | 47 | 268 | 105 | 324 | 1.06e-40 | 145 |
| MS.gene42624.t1 | AT1G23820 | 33.333 | 228 | 144 | 6 | 47 | 271 | 61 | 283 | 3.35e-38 | 139 |
| MS.gene42624.t1 | AT1G70310 | 32.018 | 228 | 147 | 6 | 47 | 271 | 65 | 287 | 2.26e-36 | 134 |
| MS.gene42624.t1 | AT5G53120 | 33.040 | 227 | 145 | 5 | 47 | 271 | 101 | 322 | 6.05e-26 | 107 |
| MS.gene42624.t1 | AT5G53120 | 33.040 | 227 | 145 | 5 | 47 | 271 | 84 | 305 | 6.30e-26 | 106 |
| MS.gene42624.t1 | AT5G53120 | 33.040 | 227 | 145 | 5 | 47 | 271 | 84 | 305 | 6.30e-26 | 106 |
| MS.gene42624.t1 | AT5G53120 | 33.040 | 227 | 145 | 5 | 47 | 271 | 84 | 305 | 6.30e-26 | 106 |
| MS.gene42624.t1 | AT5G53120 | 33.040 | 227 | 145 | 5 | 47 | 271 | 84 | 305 | 6.30e-26 | 106 |
| MS.gene42624.t1 | AT5G53120 | 33.040 | 227 | 145 | 5 | 47 | 271 | 84 | 305 | 6.30e-26 | 106 |
| MS.gene42624.t1 | AT5G53120 | 29.921 | 254 | 144 | 7 | 47 | 271 | 84 | 332 | 3.07e-22 | 96.7 |
Find 76 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATCAAAGAAAGAATAAA+TGG | 0.206936 | 3.4:-91893298 | MS.gene42624:CDS |
| CCAAAGCTACTATACGTTAA+TGG | 0.212128 | 3.4:-91895332 | MS.gene42624:CDS |
| TTACCAAGAGATAGCTCTTT+TGG | 0.239230 | 3.4:-91894937 | MS.gene42624:CDS |
| TCCCATTATAAACACTCTTT+TGG | 0.248667 | 3.4:+91894585 | None:intergenic |
| TGTCATTGAGCTTGAGCTTC+AGG | 0.258696 | 3.4:+91893853 | None:intergenic |
| AATATCATGGTCGTAATTAT+TGG | 0.268835 | 3.4:+91895268 | None:intergenic |
| TTCAATAGTGTGCTTCATAA+AGG | 0.289257 | 3.4:-91894969 | MS.gene42624:intron |
| GAGAGATTTGATATCATTGT+TGG | 0.321427 | 3.4:-91893945 | MS.gene42624:CDS |
| GTAGAGACGAATTAGATAAA+AGG | 0.323825 | 3.4:-91893971 | MS.gene42624:intron |
| TCCACAGAACCAATGAATAA+TGG | 0.340218 | 3.4:+91893331 | None:intergenic |
| GTTAATGGGTTCCCAAAGTA+TGG | 0.350858 | 3.4:-91895317 | MS.gene42624:CDS |
| ATTCATTGGTTCTGTGGAAA+TGG | 0.352637 | 3.4:-91893326 | MS.gene42624:CDS |
| TGATACTTGGGGATGGGTTA+TGG | 0.361349 | 3.4:-91893476 | MS.gene42624:intron |
| TTTCATCATGGCCATACTTT+GGG | 0.365810 | 3.4:+91895306 | None:intergenic |
| CTCTATTGACTTGTGCTTGA+GGG | 0.367793 | 3.4:+91894534 | None:intergenic |
| CAAAGCTACTATACGTTAAT+GGG | 0.372653 | 3.4:-91895331 | MS.gene42624:CDS |
| ATTTCATCATGGCCATACTT+TGG | 0.375662 | 3.4:+91895305 | None:intergenic |
| CCCCAAAAGAGTGTTTATAA+TGG | 0.380397 | 3.4:-91894587 | MS.gene42624:CDS |
| CACCTTCAACTGGGTCTGCC+AGG | 0.385046 | 3.4:+91893919 | None:intergenic |
| CCATTAACGTATAGTAGCTT+TGG | 0.397053 | 3.4:+91895332 | None:intergenic |
| TCAATAGTGTGCTTCATAAA+GGG | 0.397422 | 3.4:-91894968 | MS.gene42624:intron |
| TAACAAGGTCCACCTTCAAC+TGG | 0.402775 | 3.4:+91893909 | None:intergenic |
| GGGGAATTGCTCTATCTAAC+TGG | 0.412248 | 3.4:-91893277 | MS.gene42624:CDS |
| GAAAATGCTAGATTTGTTCC+TGG | 0.419701 | 3.4:-91893060 | MS.gene42624:CDS |
| CCCAAAAGAGTGTTTATAAT+GGG | 0.422343 | 3.4:-91894586 | MS.gene42624:CDS |
| TCAGACCAACCATTATTCAT+TGG | 0.425084 | 3.4:-91893340 | MS.gene42624:CDS |
| CATTAGGCCCTAGTGATTGA+TGG | 0.427552 | 3.4:-91894807 | MS.gene42624:intron |
| GAATCAAAGAAAGAATAAAT+GGG | 0.447920 | 3.4:-91893297 | MS.gene42624:CDS |
| GAGGTGAAGGGTCTGCTGCT+AGG | 0.467316 | 3.4:-91894561 | MS.gene42624:CDS |
| CTTGTACAGGCTGGACCGGC+AGG | 0.469860 | 3.4:-91893694 | MS.gene42624:intron |
| TTTATAATGGGAGGAGGTGA+AGG | 0.485534 | 3.4:-91894574 | MS.gene42624:CDS |
| ATTACGACCATGATATTCCT+TGG | 0.489108 | 3.4:-91895262 | MS.gene42624:CDS |
| TTTGATTGTGTTATATATAG+AGG | 0.490558 | 3.4:+91893645 | None:intergenic |
| AGGTGAAGGGTCTGCTGCTA+GGG | 0.492492 | 3.4:-91894560 | MS.gene42624:CDS |
| TATCCAAAAGAGCTATCTCT+TGG | 0.494803 | 3.4:+91894934 | None:intergenic |
| ACCATTATTCATTGGTTCTG+TGG | 0.500865 | 3.4:-91893332 | MS.gene42624:CDS |
| TCGTGAAAGAGTCTTGTTCA+TGG | 0.504717 | 3.4:+91893231 | None:intergenic |
| GCATCTTCCCATCAATCACT+AGG | 0.507422 | 3.4:+91894799 | None:intergenic |
| CATGGTCGTAATTATTGGTA+AGG | 0.509110 | 3.4:+91895273 | None:intergenic |
| TTATCGATGATGATCTCAAA+TGG | 0.509418 | 3.4:-91895229 | MS.gene42624:CDS |
| ATATCTTGTACAGGCTGGAC+CGG | 0.514869 | 3.4:-91893698 | MS.gene42624:intron |
| TCTCTATTGACTTGTGCTTG+AGG | 0.515974 | 3.4:+91894533 | None:intergenic |
| TGCTCTATCTAACTGGTGAC+TGG | 0.529803 | 3.4:-91893270 | MS.gene42624:CDS |
| TGATATCATTGTTGGAGACC+TGG | 0.537084 | 3.4:-91893937 | MS.gene42624:CDS |
| GCTAGATTTGTTCCTGGACA+CGG | 0.542235 | 3.4:-91893054 | MS.gene42624:CDS |
| ATTAGGCCCTAGTGATTGAT+GGG | 0.554095 | 3.4:-91894806 | MS.gene42624:intron |
| TTGTGCGTCAAGATACCTGC+CGG | 0.556137 | 3.4:+91893679 | None:intergenic |
| GACCTGGCAGACCCAGTTGA+AGG | 0.556389 | 3.4:-91893921 | MS.gene42624:CDS |
| CCTCGTACCAAGGAATATCA+TGG | 0.562900 | 3.4:+91895255 | None:intergenic |
| CATCATGTGTGATATAGACC+AGG | 0.569141 | 3.4:-91894506 | MS.gene42624:intron |
| ATCGAGCTTCTTGTGAGCAA+AGG | 0.571818 | 3.4:+91894308 | None:intergenic |
| CCCCAAGTATCAGCAAAAGA+TGG | 0.574786 | 3.4:+91893487 | None:intergenic |
| GGTGATGATCTATTTCATCA+TGG | 0.576842 | 3.4:+91895294 | None:intergenic |
| TCGATAACTTCCTCGTACCA+AGG | 0.582508 | 3.4:+91895245 | None:intergenic |
| TGATAAGTAACACCGTGTCC+AGG | 0.583466 | 3.4:+91893042 | None:intergenic |
| CAGAACCAATGAATAATGGT+TGG | 0.584345 | 3.4:+91893335 | None:intergenic |
| TTTGTATAAAGTTGATAACA+AGG | 0.588774 | 3.4:+91893894 | None:intergenic |
| AGAGTGTTTATAATGGGAGG+AGG | 0.595020 | 3.4:-91894580 | MS.gene42624:CDS |
| AACAAGGTCCACCTTCAACT+GGG | 0.595497 | 3.4:+91893910 | None:intergenic |
| CATCTTCCCATCAATCACTA+GGG | 0.602249 | 3.4:+91894800 | None:intergenic |
| AAGCTCAAGCTCAATGACAA+TGG | 0.611444 | 3.4:-91893849 | MS.gene42624:CDS |
| AAAAGAGTGTTTATAATGGG+AGG | 0.619147 | 3.4:-91894583 | MS.gene42624:CDS |
| CTGGCAGACCCAGTTGAAGG+TGG | 0.635094 | 3.4:-91893918 | MS.gene42624:CDS |
| GGCAGGTATCTTGACGCACA+AGG | 0.635578 | 3.4:-91893677 | MS.gene42624:CDS |
| AATCAAAGAAAGAATAAATG+GGG | 0.636793 | 3.4:-91893296 | MS.gene42624:CDS |
| TTATAATGGGAGGAGGTGAA+GGG | 0.639411 | 3.4:-91894573 | MS.gene42624:CDS |
| TGTTCATGGTGGTAGATGAG+TGG | 0.657255 | 3.4:+91893245 | None:intergenic |
| CCATGATATTCCTTGGTACG+AGG | 0.658757 | 3.4:-91895255 | MS.gene42624:CDS |
| ACTTGGGGTGACATAAGAGA+GGG | 0.659891 | 3.4:+91894727 | None:intergenic |
| AAAATACTTGATTACAAACA+GGG | 0.671188 | 3.4:-91894334 | MS.gene42624:CDS |
| TACTTGGGGTGACATAAGAG+AGG | 0.688204 | 3.4:+91894726 | None:intergenic |
| TTGGGGTGACATAAGAGAGG+GGG | 0.698820 | 3.4:+91894729 | None:intergenic |
| AGGTATCTTGACGCACAAGG+AGG | 0.706118 | 3.4:-91893674 | MS.gene42624:CDS |
| TGAAAGAGTCTTGTTCATGG+TGG | 0.711764 | 3.4:+91893234 | None:intergenic |
| CTTGGGGTGACATAAGAGAG+GGG | 0.736278 | 3.4:+91894728 | None:intergenic |
| ATACTTGATTACAAACAGGG+AGG | 0.758533 | 3.4:-91894331 | MS.gene42624:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCTTTAATAAATG+TGG | + | chr3.4:91893262-91893281 | None:intergenic | 10.0% |
| !! | AAACTAAAATAACAAGAAAA+AGG | + | chr3.4:91894141-91894160 | None:intergenic | 15.0% |
| !! | TTAAATTTAATTCAACCAAT+TGG | - | chr3.4:91894774-91894793 | MS.gene42624:CDS | 15.0% |
| !!! | ATATTGAATAATTTGATGAT+GGG | - | chr3.4:91894272-91894291 | MS.gene42624:intron | 15.0% |
| !! | AAAAATACTTGATTACAAAC+AGG | - | chr3.4:91894044-91894063 | MS.gene42624:intron | 20.0% |
| !! | AAAATACTTGATTACAAACA+GGG | - | chr3.4:91894045-91894064 | MS.gene42624:intron | 20.0% |
| !! | AAATAACAAGAAAAAGGAAA+AGG | + | chr3.4:91894135-91894154 | None:intergenic | 20.0% |
| !! | AACATTATTGAGTAAACTAA+TGG | - | chr3.4:91894345-91894364 | MS.gene42624:CDS | 20.0% |
| !! | AATCAAAGAAAGAATAAATG+GGG | - | chr3.4:91895083-91895102 | MS.gene42624:intron | 20.0% |
| !! | AATTTCATAAAACCTATAGT+TGG | + | chr3.4:91894590-91894609 | None:intergenic | 20.0% |
| !! | ACTATTATTTATGTTGCATT+AGG | - | chr3.4:91893556-91893575 | MS.gene42624:intron | 20.0% |
| !! | AGAATCAAAGAAAGAATAAA+TGG | - | chr3.4:91895081-91895100 | MS.gene42624:intron | 20.0% |
| !! | ATTTAGATAGAAACTTACTT+GGG | + | chr3.4:91893671-91893690 | None:intergenic | 20.0% |
| !! | ATTTCATAAAACCTATAGTT+GGG | + | chr3.4:91894589-91894608 | None:intergenic | 20.0% |
| !! | GAATCAAAGAAAGAATAAAT+GGG | - | chr3.4:91895082-91895101 | MS.gene42624:intron | 20.0% |
| !! | GATATTGAATAATTTGATGA+TGG | - | chr3.4:91894271-91894290 | MS.gene42624:intron | 20.0% |
| !! | TATTTAGATAGAAACTTACT+TGG | + | chr3.4:91893672-91893691 | None:intergenic | 20.0% |
| !! | TCATAATCATTTGATGAATA+TGG | + | chr3.4:91893928-91893947 | None:intergenic | 20.0% |
| !! | TTATGTTTGCTTAAATTCTT+AGG | - | chr3.4:91894159-91894178 | MS.gene42624:intron | 20.0% |
| !! | TTGCTATAATACTTCTATTA+TGG | - | chr3.4:91893494-91893513 | MS.gene42624:CDS | 20.0% |
| !! | TTTGATTGTGTTATATATAG+AGG | + | chr3.4:91894737-91894756 | None:intergenic | 20.0% |
| !!! | AGACTATCATTTTCATAATT+TGG | - | chr3.4:91893336-91893355 | MS.gene42624:CDS | 20.0% |
| !!! | TTATATTATGCTTTAAATCC+AGG | - | chr3.4:91895014-91895033 | MS.gene42624:intron | 20.0% |
| !!! | TTTGTATAAAGTTGATAACA+AGG | + | chr3.4:91894488-91894507 | None:intergenic | 20.0% |
| ! | AATATCATGGTCGTAATTAT+TGG | + | chr3.4:91893114-91893133 | None:intergenic | 25.0% |
| ! | AATGTTTAATAAGCAGAACA+CGG | + | chr3.4:91894331-91894350 | None:intergenic | 25.0% |
| ! | ATATGGATGAAGATCAATAA+TGG | + | chr3.4:91893911-91893930 | None:intergenic | 25.0% |
| ! | ATTAACTATGAATAAACAGG+AGG | - | chr3.4:91894006-91894025 | MS.gene42624:intron | 25.0% |
| ! | CGAATTAACTATGAATAAAC+AGG | - | chr3.4:91894003-91894022 | MS.gene42624:intron | 25.0% |
| ! | TATCCATTGTTAAATCCAAT+TGG | + | chr3.4:91894792-91894811 | None:intergenic | 25.0% |
| ! | TATGGATGAAGATCAATAAT+GGG | + | chr3.4:91893910-91893929 | None:intergenic | 25.0% |
| ! | TCTTTAATAAATGTGGTACT+TGG | + | chr3.4:91893255-91893274 | None:intergenic | 25.0% |
| ! | TTATGAAAATGATAGTCTAC+TGG | + | chr3.4:91893334-91893353 | None:intergenic | 25.0% |
| ! | TTTAGATAGAAACTTACTTG+GGG | + | chr3.4:91893670-91893689 | None:intergenic | 25.0% |
| !! | TTGAATTTAATTTAACGTGC+TGG | - | chr3.4:91893705-91893724 | MS.gene42624:intron | 25.0% |
| !!! | CAATATTTCTTTTTCGCAAT+TGG | - | chr3.4:91895180-91895199 | MS.gene42624:intron | 25.0% |
| !!! | TGATCAGCATTTTAAAGTAT+TGG | - | chr3.4:91893729-91893748 | MS.gene42624:intron | 25.0% |
| AAAAACAATGTCCCAACTAT+AGG | - | chr3.4:91894575-91894594 | MS.gene42624:CDS | 30.0% | |
| AACTGAATGATATCTTGTAC+AGG | - | chr3.4:91894672-91894691 | MS.gene42624:intron | 30.0% | |
| AAGCACACTATTGAAAAAGA+TGG | + | chr3.4:91893405-91893424 | None:intergenic | 30.0% | |
| ACCAAAGACATATTTGTTTC+AGG | - | chr3.4:91895266-91895285 | MS.gene42624:CDS | 30.0% | |
| CAAAGCTACTATACGTTAAT+GGG | - | chr3.4:91893048-91893067 | MS.gene42624:CDS | 30.0% | |
| CAACCAATTGGATTTAACAA+TGG | - | chr3.4:91894786-91894805 | MS.gene42624:CDS | 30.0% | |
| CAAGAAAAAGGAAAAGGAAA+AGG | + | chr3.4:91894129-91894148 | None:intergenic | 30.0% | |
| GAGAGATTTGATATCATTGT+TGG | - | chr3.4:91894434-91894453 | MS.gene42624:intron | 30.0% | |
| GTAGAGACGAATTAGATAAA+AGG | - | chr3.4:91894408-91894427 | MS.gene42624:intron | 30.0% | |
| TCAATAGTGTGCTTCATAAA+GGG | - | chr3.4:91893411-91893430 | MS.gene42624:intron | 30.0% | |
| TGTACAAGATATCATTCAGT+TGG | + | chr3.4:91894673-91894692 | None:intergenic | 30.0% | |
| TTATCGATGATGATCTCAAA+TGG | - | chr3.4:91893150-91893169 | MS.gene42624:intron | 30.0% | |
| TTATCTAATTCGTCTCTACA+AGG | + | chr3.4:91894407-91894426 | None:intergenic | 30.0% | |
| TTCAATAGTGTGCTTCATAA+AGG | - | chr3.4:91893410-91893429 | MS.gene42624:intron | 30.0% | |
| ! | CCATTATAAACACTCTTTTG+GGG | + | chr3.4:91893795-91893814 | None:intergenic | 30.0% |
| ! | CCCATTATAAACACTCTTTT+GGG | + | chr3.4:91893796-91893815 | None:intergenic | 30.0% |
| ! | TCCCATTATAAACACTCTTT+TGG | + | chr3.4:91893797-91893816 | None:intergenic | 30.0% |
| !! | AAAAGAGTGTTTATAATGGG+AGG | - | chr3.4:91893796-91893815 | MS.gene42624:intron | 30.0% |
| !! | ATGAAGATCAATAATGGGTT+TGG | + | chr3.4:91893905-91893924 | None:intergenic | 30.0% |
| !! | CCCAAAAGAGTGTTTATAAT+GGG | - | chr3.4:91893793-91893812 | MS.gene42624:intron | 30.0% |
| AACTATGAATAAACAGGAGG+TGG | - | chr3.4:91894009-91894028 | MS.gene42624:intron | 35.0% | |
| ATACTTGATTACAAACAGGG+AGG | - | chr3.4:91894048-91894067 | MS.gene42624:intron | 35.0% | |
| ATTACGACCATGATATTCCT+TGG | - | chr3.4:91893117-91893136 | MS.gene42624:intron | 35.0% | |
| ATTTCATCATGGCCATACTT+TGG | + | chr3.4:91893077-91893096 | None:intergenic | 35.0% | |
| CAGAACCAATGAATAATGGT+TGG | + | chr3.4:91895047-91895066 | None:intergenic | 35.0% | |
| CATGGTCGTAATTATTGGTA+AGG | + | chr3.4:91893109-91893128 | None:intergenic | 35.0% | |
| CCAAAGCTACTATACGTTAA+TGG | - | chr3.4:91893047-91893066 | MS.gene42624:CDS | 35.0% | |
| CCATTAACGTATAGTAGCTT+TGG | + | chr3.4:91893050-91893069 | None:intergenic | 35.0% | |
| GAAAAGGAATGATGCATACT+TGG | + | chr3.4:91894113-91894132 | None:intergenic | 35.0% | |
| GCCTGAAACAAATATGTCTT+TGG | + | chr3.4:91895270-91895289 | None:intergenic | 35.0% | |
| GGTGATGATCTATTTCATCA+TGG | + | chr3.4:91893088-91893107 | None:intergenic | 35.0% | |
| TATCCAAAAGAGCTATCTCT+TGG | + | chr3.4:91893448-91893467 | None:intergenic | 35.0% | |
| TCAGACCAACCATTATTCAT+TGG | - | chr3.4:91895039-91895058 | MS.gene42624:intron | 35.0% | |
| TCCACAGAACCAATGAATAA+TGG | + | chr3.4:91895051-91895070 | None:intergenic | 35.0% | |
| TTTCATCATGGCCATACTTT+GGG | + | chr3.4:91893076-91893095 | None:intergenic | 35.0% | |
| ! | ACATTCTCACTCAAACGTTT+TGG | - | chr3.4:91895235-91895254 | MS.gene42624:CDS | 35.0% |
| ! | ACCATCTTTTGCTGATACTT+GGG | - | chr3.4:91894891-91894910 | MS.gene42624:intron | 35.0% |
| ! | ATGAAGTTTGCTTAGTGCAA+TGG | + | chr3.4:91894207-91894226 | None:intergenic | 35.0% |
| ! | GAAAATGCTAGATTTGTTCC+TGG | - | chr3.4:91895319-91895338 | MS.gene42624:CDS | 35.0% |
| ! | TACCATCTTTTGCTGATACT+TGG | - | chr3.4:91894890-91894909 | MS.gene42624:intron | 35.0% |
| ! | TTACCAAGAGATAGCTCTTT+TGG | - | chr3.4:91893442-91893461 | MS.gene42624:intron | 35.0% |
| !! | AATGGTCTTTTGCTTTGAAC+AGG | - | chr3.4:91893168-91893187 | MS.gene42624:intron | 35.0% |
| !! | ACCATTATTCATTGGTTCTG+TGG | - | chr3.4:91895047-91895066 | MS.gene42624:intron | 35.0% |
| !! | ATTCATTGGTTCTGTGGAAA+TGG | - | chr3.4:91895053-91895072 | MS.gene42624:intron | 35.0% |
| !! | CCCCAAAAGAGTGTTTATAA+TGG | - | chr3.4:91893792-91893811 | MS.gene42624:intron | 35.0% |
| !! | CTTTTGGATACAAAGCGTTT+TGG | - | chr3.4:91893458-91893477 | MS.gene42624:intron | 35.0% |
| !! | TAATGGGTTTGGTAATAACC+TGG | + | chr3.4:91893894-91893913 | None:intergenic | 35.0% |
| AAGCTCAAGCTCAATGACAA+TGG | - | chr3.4:91894530-91894549 | MS.gene42624:CDS | 40.0% | |
| AGGTACCATGAAGTTTCGTT+GGG | - | chr3.4:91894179-91894198 | MS.gene42624:intron | 40.0% | |
| AGTCTACTGGTGTACACATA+AGG | + | chr3.4:91893321-91893340 | None:intergenic | 40.0% | |
| ATTAGGCCCTAGTGATTGAT+GGG | - | chr3.4:91893573-91893592 | MS.gene42624:intron | 40.0% | |
| CATCATGTGTGATATAGACC+AGG | - | chr3.4:91893873-91893892 | MS.gene42624:CDS | 40.0% | |
| CATCTTCCCATCAATCACTA+GGG | + | chr3.4:91893582-91893601 | None:intergenic | 40.0% | |
| GAATGATATCTTGTACAGGC+TGG | - | chr3.4:91894676-91894695 | MS.gene42624:intron | 40.0% | |
| GTAGTACGTTTGATTGAGTG+TGG | + | chr3.4:91894309-91894328 | None:intergenic | 40.0% | |
| TACGTTTGATTGAGTGTGGT+TGG | + | chr3.4:91894305-91894324 | None:intergenic | 40.0% | |
| TAGGTACCATGAAGTTTCGT+TGG | - | chr3.4:91894178-91894197 | MS.gene42624:intron | 40.0% | |
| TGATATCATTGTTGGAGACC+TGG | - | chr3.4:91894442-91894461 | MS.gene42624:intron | 40.0% | |
| ! | AGAGTGTTTATAATGGGAGG+AGG | - | chr3.4:91893799-91893818 | MS.gene42624:intron | 40.0% |
| ! | CAATGGCATTTTTGTGACTC+AGG | - | chr3.4:91894547-91894566 | MS.gene42624:CDS | 40.0% |
| ! | CCATCTTTTGCTGATACTTG+GGG | - | chr3.4:91894892-91894911 | MS.gene42624:intron | 40.0% |
| ! | TTATAATGGGAGGAGGTGAA+GGG | - | chr3.4:91893806-91893825 | MS.gene42624:intron | 40.0% |
| ! | TTTATAATGGGAGGAGGTGA+AGG | - | chr3.4:91893805-91893824 | MS.gene42624:intron | 40.0% |
| ! | TTTTGCTGATACTTGGGGAT+GGG | - | chr3.4:91894897-91894916 | MS.gene42624:intron | 40.0% |
| !! | CTCTATTGACTTGTGCTTGA+GGG | + | chr3.4:91893848-91893867 | None:intergenic | 40.0% |
| !! | GTTAATGGGTTCCCAAAGTA+TGG | - | chr3.4:91893062-91893081 | MS.gene42624:CDS | 40.0% |
| !! | TCGTGAAAGAGTCTTGTTCA+TGG | + | chr3.4:91895151-91895170 | None:intergenic | 40.0% |
| !! | TCTCTATTGACTTGTGCTTG+AGG | + | chr3.4:91893849-91893868 | None:intergenic | 40.0% |
| !! | TGAAAGAGTCTTGTTCATGG+TGG | + | chr3.4:91895148-91895167 | None:intergenic | 40.0% |
| !! | TTGACTTGTGAGTTGTGTTG+TGG | + | chr3.4:91893215-91893234 | None:intergenic | 40.0% |
| !!! | GGATACAAAGCGTTTTGGAA+AGG | - | chr3.4:91893463-91893482 | MS.gene42624:intron | 40.0% |
| AACAAGGTCCACCTTCAACT+GGG | + | chr3.4:91894472-91894491 | None:intergenic | 45.0% | |
| ACTTGGGGTGACATAAGAGA+GGG | + | chr3.4:91893655-91893674 | None:intergenic | 45.0% | |
| ATATCTTGTACAGGCTGGAC+CGG | - | chr3.4:91894681-91894700 | MS.gene42624:intron | 45.0% | |
| ATCGAGCTTCTTGTGAGCAA+AGG | + | chr3.4:91894074-91894093 | None:intergenic | 45.0% | |
| CATTAGGCCCTAGTGATTGA+TGG | - | chr3.4:91893572-91893591 | MS.gene42624:intron | 45.0% | |
| CCATGATATTCCTTGGTACG+AGG | - | chr3.4:91893124-91893143 | MS.gene42624:intron | 45.0% | |
| CCCCAAGTATCAGCAAAAGA+TGG | + | chr3.4:91894895-91894914 | None:intergenic | 45.0% | |
| CCTCGTACCAAGGAATATCA+TGG | + | chr3.4:91893127-91893146 | None:intergenic | 45.0% | |
| GCATCTTCCCATCAATCACT+AGG | + | chr3.4:91893583-91893602 | None:intergenic | 45.0% | |
| GGGGAATTGCTCTATCTAAC+TGG | - | chr3.4:91895102-91895121 | MS.gene42624:intron | 45.0% | |
| TAACAAGGTCCACCTTCAAC+TGG | + | chr3.4:91894473-91894492 | None:intergenic | 45.0% | |
| TACTTGGGGTGACATAAGAG+AGG | + | chr3.4:91893656-91893675 | None:intergenic | 45.0% | |
| TCGATAACTTCCTCGTACCA+AGG | + | chr3.4:91893137-91893156 | None:intergenic | 45.0% | |
| TGATAAGTAACACCGTGTCC+AGG | + | chr3.4:91895340-91895359 | None:intergenic | 45.0% | |
| TGCTCTATCTAACTGGTGAC+TGG | - | chr3.4:91895109-91895128 | MS.gene42624:intron | 45.0% | |
| TGGTACCCAACGAAACTTCA+TGG | + | chr3.4:91894187-91894206 | None:intergenic | 45.0% | |
| TGTCATTGAGCTTGAGCTTC+AGG | + | chr3.4:91894529-91894548 | None:intergenic | 45.0% | |
| TGTTCATGGTGGTAGATGAG+TGG | + | chr3.4:91895137-91895156 | None:intergenic | 45.0% | |
| ! | CTTTTGCTGATACTTGGGGA+TGG | - | chr3.4:91894896-91894915 | MS.gene42624:intron | 45.0% |
| ! | GCTAGATTTGTTCCTGGACA+CGG | - | chr3.4:91895325-91895344 | MS.gene42624:CDS | 45.0% |
| !! | ATAATGGTTGGTCTGAAGCC+TGG | + | chr3.4:91895035-91895054 | None:intergenic | 45.0% |
| !! | TGATACTTGGGGATGGGTTA+TGG | - | chr3.4:91894903-91894922 | MS.gene42624:intron | 45.0% |
| AGGTATCTTGACGCACAAGG+AGG | - | chr3.4:91894705-91894724 | MS.gene42624:intron | 50.0% | |
| CTTGGGGTGACATAAGAGAG+GGG | + | chr3.4:91893654-91893673 | None:intergenic | 50.0% | |
| TGTGAGTTGTGTTGTGGCTG+TGG | + | chr3.4:91893209-91893228 | None:intergenic | 50.0% | |
| TTGGGGTGACATAAGAGAGG+GGG | + | chr3.4:91893653-91893672 | None:intergenic | 50.0% | |
| TTGTGCGTCAAGATACCTGC+CGG | + | chr3.4:91894703-91894722 | None:intergenic | 50.0% | |
| AGGTGAAGGGTCTGCTGCTA+GGG | - | chr3.4:91893819-91893838 | MS.gene42624:intron | 55.0% | |
| GGCAGGTATCTTGACGCACA+AGG | - | chr3.4:91894702-91894721 | MS.gene42624:intron | 55.0% | |
| CACCTTCAACTGGGTCTGCC+AGG | + | chr3.4:91894463-91894482 | None:intergenic | 60.0% | |
| CTGGCAGACCCAGTTGAAGG+TGG | - | chr3.4:91894461-91894480 | MS.gene42624:intron | 60.0% | |
| GACCTGGCAGACCCAGTTGA+AGG | - | chr3.4:91894458-91894477 | MS.gene42624:intron | 60.0% | |
| GAGGTGAAGGGTCTGCTGCT+AGG | - | chr3.4:91893818-91893837 | MS.gene42624:intron | 60.0% | |
| CTTGTACAGGCTGGACCGGC+AGG | - | chr3.4:91894685-91894704 | MS.gene42624:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91893035 | 91895366 | 91893035 | ID=MS.gene42624 |
| chr3.4 | mRNA | 91893035 | 91895366 | 91893035 | ID=MS.gene42624.t1;Parent=MS.gene42624 |
| chr3.4 | exon | 91895212 | 91895366 | 91895212 | ID=MS.gene42624.t1.exon1;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91895212 | 91895366 | 91895212 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91894917 | 91894983 | 91894917 | ID=MS.gene42624.t1.exon2;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91894917 | 91894983 | 91894917 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91894729 | 91894823 | 91894729 | ID=MS.gene42624.t1.exon3;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91894729 | 91894823 | 91894729 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91894507 | 91894609 | 91894507 | ID=MS.gene42624.t1.exon4;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91894507 | 91894609 | 91894507 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91894288 | 91894376 | 91894288 | ID=MS.gene42624.t1.exon5;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91894288 | 91894376 | 91894288 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91893833 | 91893989 | 91893833 | ID=MS.gene42624.t1.exon6;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91893833 | 91893989 | 91893833 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91893632 | 91893707 | 91893632 | ID=MS.gene42624.t1.exon7;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91893632 | 91893707 | 91893632 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91893477 | 91893535 | 91893477 | ID=MS.gene42624.t1.exon8;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91893477 | 91893535 | 91893477 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91893229 | 91893365 | 91893229 | ID=MS.gene42624.t1.exon9;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91893229 | 91893365 | 91893229 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| chr3.4 | exon | 91893035 | 91893113 | 91893035 | ID=MS.gene42624.t1.exon10;Parent=MS.gene42624.t1 |
| chr3.4 | CDS | 91893035 | 91893113 | 91893035 | ID=cds.MS.gene42624.t1;Parent=MS.gene42624.t1 |
| Gene Sequence |
| Protein sequence |
