Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42684.t1 | XP_024635031.1 | 86.1 | 360 | 28 | 3 | 1 | 357 | 1 | 341 | 8.30E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42684.t1 | Q9S7X6 | 67.0 | 355 | 98 | 1 | 1 | 355 | 1 | 336 | 1.1e-136 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42684.t1 | G7J8E3 | 83.8 | 358 | 29 | 3 | 1 | 357 | 1 | 330 | 4.2e-172 | 613.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42684 | MS.gene038589 | PPI |
| MS.gene45048 | MS.gene42684 | PPI |
| MS.gene42684 | MS.gene80283 | PPI |
| MS.gene42684 | MS.gene06954 | PPI |
| MS.gene42684 | MS.gene009124 | PPI |
| MS.gene42684 | MS.gene06736 | PPI |
| MS.gene42684 | MS.gene038590 | PPI |
| MS.gene42684 | MS.gene027622 | PPI |
| MS.gene42684 | MS.gene013613 | PPI |
| MS.gene42684 | MS.gene65617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42684.t1 | MTR_3g104960 | 83.799 | 358 | 29 | 3 | 1 | 357 | 1 | 330 | 0.0 | 607 |
| MS.gene42684.t1 | MTR_1g015300 | 71.186 | 354 | 82 | 2 | 1 | 354 | 1 | 334 | 0.0 | 530 |
| MS.gene42684.t1 | MTR_5g006140 | 57.955 | 352 | 121 | 5 | 1 | 352 | 1 | 325 | 4.23e-145 | 413 |
| MS.gene42684.t1 | MTR_5g006140 | 64.015 | 264 | 87 | 4 | 1 | 264 | 1 | 256 | 1.46e-123 | 356 |
| MS.gene42684.t1 | MTR_5g034470 | 33.195 | 241 | 145 | 8 | 27 | 259 | 46 | 278 | 7.17e-36 | 134 |
| MS.gene42684.t1 | MTR_5g034470 | 33.195 | 241 | 145 | 8 | 27 | 259 | 46 | 278 | 9.13e-36 | 133 |
| MS.gene42684.t1 | MTR_8g063940 | 31.474 | 251 | 155 | 9 | 17 | 259 | 36 | 277 | 9.45e-35 | 130 |
| MS.gene42684.t1 | MTR_3g091090 | 33.498 | 203 | 128 | 5 | 59 | 259 | 95 | 292 | 2.75e-23 | 99.8 |
| MS.gene42684.t1 | MTR_3g078190 | 34.266 | 143 | 93 | 1 | 50 | 191 | 61 | 203 | 1.91e-22 | 96.7 |
| MS.gene42684.t1 | MTR_1g028360 | 32.243 | 214 | 139 | 4 | 47 | 259 | 88 | 296 | 9.41e-21 | 92.8 |
| MS.gene42684.t1 | MTR_3g032400 | 72.727 | 44 | 9 | 1 | 299 | 339 | 1 | 44 | 1.71e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42684.t1 | AT5G19530 | 67.042 | 355 | 98 | 1 | 1 | 355 | 1 | 336 | 4.91e-174 | 487 |
| MS.gene42684.t1 | AT5G19530 | 67.241 | 348 | 95 | 1 | 8 | 355 | 1 | 329 | 9.15e-171 | 479 |
| MS.gene42684.t1 | AT1G23820 | 34.545 | 220 | 137 | 5 | 47 | 264 | 105 | 319 | 1.21e-39 | 143 |
| MS.gene42684.t1 | AT1G23820 | 34.419 | 215 | 134 | 5 | 47 | 259 | 61 | 270 | 1.10e-37 | 138 |
| MS.gene42684.t1 | AT1G70310 | 33.023 | 215 | 137 | 5 | 47 | 259 | 65 | 274 | 9.67e-36 | 133 |
| MS.gene42684.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 101 | 309 | 2.77e-25 | 105 |
| MS.gene42684.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene42684.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene42684.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene42684.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene42684.t1 | AT5G53120 | 33.645 | 214 | 136 | 4 | 47 | 259 | 84 | 292 | 3.46e-25 | 105 |
| MS.gene42684.t1 | AT5G53120 | 30.290 | 241 | 135 | 6 | 47 | 259 | 84 | 319 | 1.94e-21 | 94.7 |
Find 75 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATCAAAGAAAGAATAAA+TGG | 0.206936 | 3.3:-86333632 | MS.gene42684:CDS |
| CCAAAGCTACTATACGTTAA+TGG | 0.212128 | 3.3:-86336638 | MS.gene42684:CDS |
| TTACCAAGAGATAGCTCTTT+TGG | 0.239230 | 3.3:-86336242 | MS.gene42684:CDS |
| TCCCATTATAAACACTCTTT+TGG | 0.248667 | 3.3:+86334911 | None:intergenic |
| TGTCATTGAGCTTGAGCTTC+AGG | 0.258696 | 3.3:+86334188 | None:intergenic |
| AATATCATGGTCGTAATTAT+TGG | 0.268835 | 3.3:+86336574 | None:intergenic |
| TTCAATAGTGTGCTTCATAA+AGG | 0.289257 | 3.3:-86336274 | MS.gene42684:intron |
| CTCTATTGACTTGTGCTTGA+AGG | 0.314655 | 3.3:+86334860 | None:intergenic |
| GAGAGATTTGATATCATTGT+TGG | 0.321427 | 3.3:-86334280 | MS.gene42684:CDS |
| GTAGAGACGAATTAGATAAA+AGG | 0.323825 | 3.3:-86334306 | MS.gene42684:intron |
| TTTGCTGATACTTGGGGATT+GGG | 0.332837 | 3.3:-86333816 | MS.gene42684:CDS |
| TCCACAGAACCAATGAATAA+TGG | 0.340218 | 3.3:+86333665 | None:intergenic |
| GATACTTGGGGATTGGGTTA+TGG | 0.340417 | 3.3:-86333810 | MS.gene42684:CDS |
| GTTAATGGGTTCCCAAAGTA+TGG | 0.350858 | 3.3:-86336623 | MS.gene42684:CDS |
| ATTCATTGGTTCTGTGGAAA+TGG | 0.352637 | 3.3:-86333660 | MS.gene42684:CDS |
| TTTCATCATGGCCATACTTT+GGG | 0.365810 | 3.3:+86336612 | None:intergenic |
| CAAAGCTACTATACGTTAAT+GGG | 0.372653 | 3.3:-86336637 | MS.gene42684:CDS |
| ATTTCATCATGGCCATACTT+TGG | 0.375662 | 3.3:+86336611 | None:intergenic |
| CCCCAAAAGAGTGTTTATAA+TGG | 0.380397 | 3.3:-86334913 | MS.gene42684:CDS |
| CCATTAACGTATAGTAGCTT+TGG | 0.397053 | 3.3:+86336638 | None:intergenic |
| TCAATAGTGTGCTTCATAAA+GGG | 0.397422 | 3.3:-86336273 | MS.gene42684:intron |
| TAACAAGGTCCACCTTCAAC+TGG | 0.402775 | 3.3:+86334244 | None:intergenic |
| GGGGAATTGCTCTATCTAAC+TGG | 0.412248 | 3.3:-86333611 | MS.gene42684:CDS |
| GAAAATGCTAGATTTGTTCC+TGG | 0.419701 | 3.3:-86333394 | MS.gene42684:CDS |
| CCCAAAAGAGTGTTTATAAT+GGG | 0.422343 | 3.3:-86334912 | MS.gene42684:CDS |
| TCAGACCAACCATTATTCAT+TGG | 0.425084 | 3.3:-86333674 | MS.gene42684:CDS |
| CATTAGGCCCTAGTGATTGA+TGG | 0.427552 | 3.3:-86336112 | MS.gene42684:intron |
| GAATCAAAGAAAGAATAAAT+GGG | 0.447920 | 3.3:-86333631 | MS.gene42684:CDS |
| TGATATCATTGTTGGAGACT+TGG | 0.456426 | 3.3:-86334272 | MS.gene42684:CDS |
| CTTGTACAGGCTGGACCGGC+AGG | 0.458626 | 3.3:-86334029 | MS.gene42684:intron |
| GAGGTGAAGGGTCTGCTGCT+AGG | 0.467316 | 3.3:-86334887 | MS.gene42684:CDS |
| TTTATAATGGGAGGAGGTGA+AGG | 0.485534 | 3.3:-86334900 | MS.gene42684:CDS |
| ATTACGACCATGATATTCCT+TGG | 0.489108 | 3.3:-86336568 | MS.gene42684:CDS |
| TTTGATTGTGTTATATATAG+AGG | 0.490558 | 3.3:+86333980 | None:intergenic |
| AGGTGAAGGGTCTGCTGCTA+GGG | 0.492492 | 3.3:-86334886 | MS.gene42684:CDS |
| TATCCAAAAGAGCTATCTCT+TGG | 0.494803 | 3.3:+86336239 | None:intergenic |
| ACCATTATTCATTGGTTCTG+TGG | 0.500865 | 3.3:-86333666 | MS.gene42684:CDS |
| TCGTGAAAGAGTCTTGTTCA+TGG | 0.504717 | 3.3:+86333565 | None:intergenic |
| GCATCTTCCCATCAATCACT+AGG | 0.507422 | 3.3:+86336104 | None:intergenic |
| CATGGTCGTAATTATTGGTA+AGG | 0.509110 | 3.3:+86336579 | None:intergenic |
| TTATCGATGATGATCTCAAA+TGG | 0.509418 | 3.3:-86336535 | MS.gene42684:CDS |
| ATATCTTGTACAGGCTGGAC+CGG | 0.514869 | 3.3:-86334033 | MS.gene42684:intron |
| TGCTCTATCTAACTGGTGAC+TGG | 0.529803 | 3.3:-86333604 | MS.gene42684:CDS |
| GCTAGATTTGTTCCTGGACA+CGG | 0.542235 | 3.3:-86333388 | MS.gene42684:CDS |
| GACTTGGCAGACCCAGTTGA+AGG | 0.548063 | 3.3:-86334256 | MS.gene42684:CDS |
| CCCCAAGTATCAGCAAAAGA+TGG | 0.550572 | 3.3:+86333822 | None:intergenic |
| ATTAGGCCCTAGTGATTGAT+GGG | 0.554095 | 3.3:-86336111 | MS.gene42684:intron |
| TTGTGCGTCAAGAAACCTGC+CGG | 0.556424 | 3.3:+86334014 | None:intergenic |
| CCTCGTACCAAGGAATATCA+TGG | 0.562900 | 3.3:+86336561 | None:intergenic |
| CATCATGTGTGATATAGACC+AGG | 0.569141 | 3.3:-86334832 | MS.gene42684:intron |
| ATCGAGCTTCTTGTGAGCAA+AGG | 0.571818 | 3.3:+86334637 | None:intergenic |
| GGTGATGATCTATTTCATCA+TGG | 0.576842 | 3.3:+86336600 | None:intergenic |
| TCGATAACTTCCTCGTACCA+AGG | 0.582508 | 3.3:+86336551 | None:intergenic |
| TGATAAGTAACACCGTGTCC+AGG | 0.583466 | 3.3:+86333376 | None:intergenic |
| CAGAACCAATGAATAATGGT+TGG | 0.584345 | 3.3:+86333669 | None:intergenic |
| TTTGTATAAAGTTGATAACA+AGG | 0.588774 | 3.3:+86334229 | None:intergenic |
| AGAGTGTTTATAATGGGAGG+AGG | 0.595020 | 3.3:-86334906 | MS.gene42684:CDS |
| AACAAGGTCCACCTTCAACT+GGG | 0.595497 | 3.3:+86334245 | None:intergenic |
| GGCAGGTTTCTTGACGCACA+AGG | 0.600278 | 3.3:-86334012 | MS.gene42684:CDS |
| CATCTTCCCATCAATCACTA+GGG | 0.602249 | 3.3:+86336105 | None:intergenic |
| AAGCTCAAGCTCAATGACAA+TGG | 0.611444 | 3.3:-86334184 | MS.gene42684:CDS |
| AAAAGAGTGTTTATAATGGG+AGG | 0.619147 | 3.3:-86334909 | MS.gene42684:CDS |
| AATCAAAGAAAGAATAAATG+GGG | 0.636793 | 3.3:-86333630 | MS.gene42684:CDS |
| TTATAATGGGAGGAGGTGAA+GGG | 0.639411 | 3.3:-86334899 | MS.gene42684:CDS |
| TTGGCAGACCCAGTTGAAGG+TGG | 0.643350 | 3.3:-86334253 | MS.gene42684:CDS |
| TGTTCATGGTGGTAGATGAG+TGG | 0.657255 | 3.3:+86333579 | None:intergenic |
| CCATGATATTCCTTGGTACG+AGG | 0.658757 | 3.3:-86336561 | MS.gene42684:CDS |
| ACTTGGGGTGACATAAGAGA+GGG | 0.659891 | 3.3:+86336032 | None:intergenic |
| AAAATACTTGATTACAAACA+GGG | 0.671188 | 3.3:-86334663 | MS.gene42684:CDS |
| TACTTGGGGTGACATAAGAG+AGG | 0.688204 | 3.3:+86336031 | None:intergenic |
| TTGGGGTGACATAAGAGAGG+GGG | 0.698820 | 3.3:+86336034 | None:intergenic |
| TGAAAGAGTCTTGTTCATGG+TGG | 0.711764 | 3.3:+86333568 | None:intergenic |
| AGGTTTCTTGACGCACAAGG+AGG | 0.713497 | 3.3:-86334009 | MS.gene42684:CDS |
| CTTGGGGTGACATAAGAGAG+GGG | 0.736278 | 3.3:+86336033 | None:intergenic |
| ATACTTGATTACAAACAGGG+AGG | 0.758533 | 3.3:-86334660 | MS.gene42684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCTTTAATAAATG+TGG | + | chr3.3:86333596-86333615 | None:intergenic | 10.0% |
| !! | AAACTAAAATAACAAGAAAA+AGG | + | chr3.3:86335446-86335465 | None:intergenic | 15.0% |
| !! | ATTTATATAGAAACTTACTT+GGG | + | chr3.3:86334006-86334025 | None:intergenic | 15.0% |
| !! | TATTTATATAGAAACTTACT+TGG | + | chr3.3:86334007-86334026 | None:intergenic | 15.0% |
| !! | TTAAATTTAATTCAAGCAAT+TGG | - | chr3.3:86336079-86336098 | MS.gene42684:CDS | 15.0% |
| !!! | ATATTGAATAATTTGATGAT+GGG | - | chr3.3:86335577-86335596 | MS.gene42684:intron | 15.0% |
| !!! | GTAAAAAAGTGTAAAAAAAA+CGG | - | chr3.3:86334205-86334224 | MS.gene42684:CDS | 15.0% |
| !!! | GTAAAAAAGTGTAAAAAAAA+CGG | + | chr3.3:86334224-86334205 | None:intergenic | 15.0% |
| !!! | TAAAAAAGTGTAAAAAAAAC+GGG | - | chr3.3:86334206-86334225 | MS.gene42684:CDS | 15.0% |
| !!! | TAAAAAAGTGTAAAAAAAAC+GGG | + | chr3.3:86334225-86334206 | None:intergenic | 15.0% |
| !! | AAAAATACTTGATTACAAAC+AGG | - | chr3.3:86335355-86335374 | MS.gene42684:intron | 20.0% |
| !! | AAAATACTTGATTACAAACA+GGG | - | chr3.3:86335356-86335375 | MS.gene42684:intron | 20.0% |
| !! | AAATAACAAGAAAAAGGAAA+AGG | + | chr3.3:86335440-86335459 | None:intergenic | 20.0% |
| !! | AACATTATTGAGTAAACTAA+TGG | - | chr3.3:86335650-86335669 | MS.gene42684:intron | 20.0% |
| !! | AATCAAAGAAAGAATAAATG+GGG | - | chr3.3:86336389-86336408 | MS.gene42684:intron | 20.0% |
| !! | AATTTCATAAAACCTATAGT+TGG | + | chr3.3:86335895-86335914 | None:intergenic | 20.0% |
| !! | ACTATTATTTATGTTGCATT+AGG | - | chr3.3:86333891-86333910 | MS.gene42684:intron | 20.0% |
| !! | AGAATCAAAGAAAGAATAAA+TGG | - | chr3.3:86336387-86336406 | MS.gene42684:intron | 20.0% |
| !! | ATATGGATGAAGATTAATAA+TGG | + | chr3.3:86335225-86335244 | None:intergenic | 20.0% |
| !! | ATCATAATCATTGATGAATA+TGG | + | chr3.3:86335242-86335261 | None:intergenic | 20.0% |
| !! | ATTTCATAAAACCTATAGTT+GGG | + | chr3.3:86335894-86335913 | None:intergenic | 20.0% |
| !! | GAATCAAAGAAAGAATAAAT+GGG | - | chr3.3:86336388-86336407 | MS.gene42684:intron | 20.0% |
| !! | GATATTGAATAATTTGATGA+TGG | - | chr3.3:86335576-86335595 | MS.gene42684:intron | 20.0% |
| !! | TATGGATGAAGATTAATAAT+GGG | + | chr3.3:86335224-86335243 | None:intergenic | 20.0% |
| !! | TTATGTTTGCTTAAATTCTT+AGG | - | chr3.3:86335464-86335483 | MS.gene42684:intron | 20.0% |
| !! | TTTATATAGAAACTTACTTG+GGG | + | chr3.3:86334005-86334024 | None:intergenic | 20.0% |
| !! | TTTGATTGTGTTATATATAG+AGG | + | chr3.3:86336042-86336061 | None:intergenic | 20.0% |
| !!! | TTATATTATGCTTTAAATCC+AGG | - | chr3.3:86336320-86336339 | MS.gene42684:intron | 20.0% |
| !!! | TTTAATTTAATATAACGTGC+TGG | - | chr3.3:86334045-86334064 | MS.gene42684:intron | 20.0% |
| !!! | TTTGTATAAAGTTGATAACA+AGG | + | chr3.3:86335793-86335812 | None:intergenic | 20.0% |
| ! | AAACAAAATGAAGAAGATGA+TGG | - | chr3.3:86334813-86334832 | MS.gene42684:intron | 25.0% |
| ! | AAGAAGATAAAGAAGATATG+AGG | + | chr3.3:86334421-86334440 | None:intergenic | 25.0% |
| ! | AATATCATGGTCGTAATTAT+TGG | + | chr3.3:86333448-86333467 | None:intergenic | 25.0% |
| ! | AATGTTTAATAAGCAGAACA+CGG | + | chr3.3:86335636-86335655 | None:intergenic | 25.0% |
| ! | AGAAGATAAAGAAGATATGA+GGG | + | chr3.3:86334420-86334439 | None:intergenic | 25.0% |
| ! | ATCAATAGTGTATTTAGCAA+TGG | + | chr3.3:86334504-86334523 | None:intergenic | 25.0% |
| ! | ATGTTAATGAAGAAGATATG+AGG | - | chr3.3:86334766-86334785 | MS.gene42684:intron | 25.0% |
| ! | TCTTTAATAAATGTGGTACT+TGG | + | chr3.3:86333589-86333608 | None:intergenic | 25.0% |
| ! | TGTTAATGAAGAAGATATGA+GGG | - | chr3.3:86334767-86334786 | MS.gene42684:intron | 25.0% |
| ! | TTGCTATAGTACTTCTATTA+TGG | - | chr3.3:86333829-86333848 | MS.gene42684:CDS | 25.0% |
| !! | AGACTATCATTTTCACAATT+CGG | - | chr3.3:86333671-86333690 | MS.gene42684:CDS | 25.0% |
| !!! | ATGAAGATTAATAATGGGTT+TGG | + | chr3.3:86335219-86335238 | None:intergenic | 25.0% |
| !!! | CAATATTTCTTTTTCGCAAT+TGG | - | chr3.3:86336486-86336505 | MS.gene42684:intron | 25.0% |
| !!! | GATTAGGCATTTTAAAGTAT+TGG | - | chr3.3:86334067-86334086 | MS.gene42684:intron | 25.0% |
| AAAAACAATGTCCCAACTAT+AGG | - | chr3.3:86335880-86335899 | MS.gene42684:intron | 30.0% | |
| AAACAAGATGAAGAAGATGA+TGG | + | chr3.3:86334374-86334393 | None:intergenic | 30.0% | |
| AAACTAATTTCTCAAAGTGG+TGG | - | chr3.3:86334566-86334585 | MS.gene42684:intron | 30.0% | |
| AACTCAAACAAGACTCATAA+TGG | + | chr3.3:86334610-86334629 | None:intergenic | 30.0% | |
| AACTGAATGATATCTTGTAC+AGG | - | chr3.3:86335977-86335996 | MS.gene42684:intron | 30.0% | |
| AAGCACACTATTGAAAAAGA+TGG | + | chr3.3:86333740-86333759 | None:intergenic | 30.0% | |
| ACAACACAATTAATCTGCTA+AGG | - | chr3.3:86334543-86334562 | MS.gene42684:intron | 30.0% | |
| ACCAAAGACATATTTGTTTC+AGG | - | chr3.3:86336572-86336591 | MS.gene42684:CDS | 30.0% | |
| ACTCAAACAAGACTCATAAT+GGG | + | chr3.3:86334609-86334628 | None:intergenic | 30.0% | |
| AGGAAACTAATTTCTCAAAG+TGG | - | chr3.3:86334563-86334582 | MS.gene42684:intron | 30.0% | |
| ATTAACTATGAACAAACAGG+AGG | - | chr3.3:86335317-86335336 | MS.gene42684:intron | 30.0% | |
| CAAAGCTACTATACGTTAAT+GGG | - | chr3.3:86333382-86333401 | MS.gene42684:CDS | 30.0% | |
| CAAGCAATTGGATTTAACAA+TGG | - | chr3.3:86336091-86336110 | MS.gene42684:CDS | 30.0% | |
| CGAATTAACTATGAACAAAC+AGG | - | chr3.3:86335314-86335333 | MS.gene42684:intron | 30.0% | |
| GAGAGATTTGATATCATTGT+TGG | - | chr3.3:86335739-86335758 | MS.gene42684:intron | 30.0% | |
| GCGCAACAATATTTAAAGAA+TGG | - | chr3.3:86334674-86334693 | MS.gene42684:CDS | 30.0% | |
| GTAGAGACGAATTAGATAAA+AGG | - | chr3.3:86335713-86335732 | MS.gene42684:intron | 30.0% | |
| TCAATAGTGTGCTTCATAAA+GGG | - | chr3.3:86333746-86333765 | MS.gene42684:intron | 30.0% | |
| TGAAAATGATAGTCTACTAC+TGG | + | chr3.3:86333666-86333685 | None:intergenic | 30.0% | |
| TGCTAAATACACTATTGATG+TGG | - | chr3.3:86334505-86334524 | MS.gene42684:intron | 30.0% | |
| TGTACAAGATATCATTCAGT+TGG | + | chr3.3:86335978-86335997 | None:intergenic | 30.0% | |
| TTAATATAACGTGCTGGATT+AGG | - | chr3.3:86334051-86334070 | MS.gene42684:intron | 30.0% | |
| TTATCGATGATGATCTCAAA+TGG | - | chr3.3:86333484-86333503 | MS.gene42684:intron | 30.0% | |
| TTCAATAGTGTGCTTCATAA+AGG | - | chr3.3:86333745-86333764 | MS.gene42684:intron | 30.0% | |
| ! | CCATTATAAACACTCTTTTG+GGG | + | chr3.3:86335109-86335128 | None:intergenic | 30.0% |
| ! | CCCATTATAAACACTCTTTT+GGG | + | chr3.3:86335110-86335129 | None:intergenic | 30.0% |
| ! | TCCCATTATAAACACTCTTT+TGG | + | chr3.3:86335111-86335130 | None:intergenic | 30.0% |
| !! | AAAAGAGTGTTTATAATGGG+AGG | - | chr3.3:86335110-86335129 | MS.gene42684:intron | 30.0% |
| !! | AGTCTTGTTTGAGTTTGTTT+GGG | - | chr3.3:86334615-86334634 | MS.gene42684:intron | 30.0% |
| !! | CCCAAAAGAGTGTTTATAAT+GGG | - | chr3.3:86335107-86335126 | MS.gene42684:intron | 30.0% |
| ACTCTTCTCAAATCAAAGCA+TGG | - | chr3.3:86334464-86334483 | MS.gene42684:intron | 35.0% | |
| ATACTTGATTACAAACAGGG+AGG | - | chr3.3:86335359-86335378 | MS.gene42684:intron | 35.0% | |
| ATTACGACCATGATATTCCT+TGG | - | chr3.3:86333451-86333470 | MS.gene42684:intron | 35.0% | |
| ATTTCATCATGGCCATACTT+TGG | + | chr3.3:86333411-86333430 | None:intergenic | 35.0% | |
| CAGAACCAATGAATAATGGT+TGG | + | chr3.3:86336353-86336372 | None:intergenic | 35.0% | |
| CATGGTCGTAATTATTGGTA+AGG | + | chr3.3:86333443-86333462 | None:intergenic | 35.0% | |
| CCAAAGCTACTATACGTTAA+TGG | - | chr3.3:86333381-86333400 | MS.gene42684:CDS | 35.0% | |
| CCATTAACGTATAGTAGCTT+TGG | + | chr3.3:86333384-86333403 | None:intergenic | 35.0% | |
| GAAAAGGAATGATGCATACT+TGG | + | chr3.3:86335424-86335443 | None:intergenic | 35.0% | |
| GCCTGAAACAAATATGTCTT+TGG | + | chr3.3:86336576-86336595 | None:intergenic | 35.0% | |
| GGTGATGATCTATTTCATCA+TGG | + | chr3.3:86333422-86333441 | None:intergenic | 35.0% | |
| TATCCAAAAGAGCTATCTCT+TGG | + | chr3.3:86333783-86333802 | None:intergenic | 35.0% | |
| TCAGACCAACCATTATTCAT+TGG | - | chr3.3:86336345-86336364 | MS.gene42684:intron | 35.0% | |
| TCCACAGAACCAATGAATAA+TGG | + | chr3.3:86336357-86336376 | None:intergenic | 35.0% | |
| TGATATCATTGTTGGAGACT+TGG | - | chr3.3:86335747-86335766 | MS.gene42684:intron | 35.0% | |
| TTTCATCATGGCCATACTTT+GGG | + | chr3.3:86333410-86333429 | None:intergenic | 35.0% | |
| ! | ACATTCTCACTCAAACGTTT+TGG | - | chr3.3:86336541-86336560 | MS.gene42684:CDS | 35.0% |
| ! | ACCATCTTTTGCTGATACTT+GGG | - | chr3.3:86336196-86336215 | MS.gene42684:intron | 35.0% |
| ! | ATGAAGTTTGCTTAGTGCAA+TGG | + | chr3.3:86335512-86335531 | None:intergenic | 35.0% |
| ! | GAAAATGCTAGATTTGTTCC+TGG | - | chr3.3:86336625-86336644 | MS.gene42684:CDS | 35.0% |
| ! | TACCATCTTTTGCTGATACT+TGG | - | chr3.3:86336195-86336214 | MS.gene42684:intron | 35.0% |
| ! | TTACCAAGAGATAGCTCTTT+TGG | - | chr3.3:86333777-86333796 | MS.gene42684:CDS | 35.0% |
| !! | AATGGTCTTTTGCTTTGAAC+AGG | - | chr3.3:86333502-86333521 | MS.gene42684:intron | 35.0% |
| !! | ACCATTATTCATTGGTTCTG+TGG | - | chr3.3:86336353-86336372 | MS.gene42684:intron | 35.0% |
| !! | ATTCATTGGTTCTGTGGAAA+TGG | - | chr3.3:86336359-86336378 | MS.gene42684:intron | 35.0% |
| !! | CCCCAAAAGAGTGTTTATAA+TGG | - | chr3.3:86335106-86335125 | MS.gene42684:intron | 35.0% |
| !! | CTTTTGGATACAAAGCGTTT+TGG | - | chr3.3:86333793-86333812 | MS.gene42684:CDS | 35.0% |
| !! | GAGTCTTGTTTGAGTTTGTT+TGG | - | chr3.3:86334614-86334633 | MS.gene42684:intron | 35.0% |
| !! | TAATGGGTTTGGTAATAACC+TGG | + | chr3.3:86335208-86335227 | None:intergenic | 35.0% |
| AACTATGAACAAACAGGAGG+TGG | - | chr3.3:86335320-86335339 | MS.gene42684:intron | 40.0% | |
| AAGCTCAAGCTCAATGACAA+TGG | - | chr3.3:86335835-86335854 | MS.gene42684:intron | 40.0% | |
| AGGTACCATGAAGTTTCGTT+GGG | - | chr3.3:86335484-86335503 | MS.gene42684:intron | 40.0% | |
| ATTAGGCCCTAGTGATTGAT+GGG | - | chr3.3:86333908-86333927 | MS.gene42684:intron | 40.0% | |
| CATCATGTGTGATATAGACC+AGG | - | chr3.3:86335187-86335206 | MS.gene42684:intron | 40.0% | |
| CATCTTCCCATCAATCACTA+GGG | + | chr3.3:86333917-86333936 | None:intergenic | 40.0% | |
| GAATGATATCTTGTACAGGC+TGG | - | chr3.3:86335981-86336000 | MS.gene42684:intron | 40.0% | |
| GTAGTACGTTTGATTGAGTG+TGG | + | chr3.3:86335614-86335633 | None:intergenic | 40.0% | |
| GTCTACTACTGGTGTACATA+AGG | + | chr3.3:86333655-86333674 | None:intergenic | 40.0% | |
| TACGTTTGATTGAGTGTGGT+TGG | + | chr3.3:86335610-86335629 | None:intergenic | 40.0% | |
| TAGGTACCATGAAGTTTCGT+TGG | - | chr3.3:86335483-86335502 | MS.gene42684:intron | 40.0% | |
| TGGTGCTCTTAGATATCTTG+AGG | - | chr3.3:86334649-86334668 | MS.gene42684:CDS | 40.0% | |
| TTTGCGTGAGTTAACTCACA+CGG | + | chr3.3:86334266-86334285 | None:intergenic | 40.0% | |
| TTTGCTGATACTTGGGGATT+GGG | - | chr3.3:86336203-86336222 | MS.gene42684:intron | 40.0% | |
| ! | AGAGTGTTTATAATGGGAGG+AGG | - | chr3.3:86335113-86335132 | MS.gene42684:intron | 40.0% |
| ! | CAATGGCATTTTTGTGACTC+AGG | - | chr3.3:86335852-86335871 | MS.gene42684:intron | 40.0% |
| ! | CCATCTTTTGCTGATACTTG+GGG | - | chr3.3:86336197-86336216 | MS.gene42684:intron | 40.0% |
| ! | GTATTTTCGGAATGGTTGCA+GGG | - | chr3.3:86335030-86335049 | MS.gene42684:intron | 40.0% |
| ! | GTATTTTCGGAATGGTTGCA+GGG | + | chr3.3:86335049-86335030 | None:intergenic | 40.0% |
| ! | TTATAATGGGAGGAGGTGAA+GGG | - | chr3.3:86335120-86335139 | MS.gene42684:intron | 40.0% |
| ! | TTTATAATGGGAGGAGGTGA+AGG | - | chr3.3:86335119-86335138 | MS.gene42684:intron | 40.0% |
| ! | TTTTGCTGATACTTGGGGAT+TGG | - | chr3.3:86336202-86336221 | MS.gene42684:intron | 40.0% |
| !! | CTCTATTGACTTGTGCTTGA+AGG | + | chr3.3:86335162-86335181 | None:intergenic | 40.0% |
| !! | GTTAATGGGTTCCCAAAGTA+TGG | - | chr3.3:86333396-86333415 | MS.gene42684:CDS | 40.0% |
| !! | TCGTGAAAGAGTCTTGTTCA+TGG | + | chr3.3:86336457-86336476 | None:intergenic | 40.0% |
| !! | TGAAAGAGTCTTGTTCATGG+TGG | + | chr3.3:86336454-86336473 | None:intergenic | 40.0% |
| !! | TTGACTTGTGAGTTGTGTTG+TGG | + | chr3.3:86333549-86333568 | None:intergenic | 40.0% |
| !!! | GGATACAAAGCGTTTTGGAA+AGG | - | chr3.3:86333798-86333817 | MS.gene42684:CDS | 40.0% |
| AACAAGGTCCACCTTCAACT+GGG | + | chr3.3:86335777-86335796 | None:intergenic | 45.0% | |
| ACTTGGGGTGACATAAGAGA+GGG | + | chr3.3:86333990-86334009 | None:intergenic | 45.0% | |
| ATATCTTGTACAGGCTGGAC+CGG | - | chr3.3:86335986-86336005 | MS.gene42684:intron | 45.0% | |
| ATCGAGCTTCTTGTGAGCAA+AGG | + | chr3.3:86335385-86335404 | None:intergenic | 45.0% | |
| CATTAGGCCCTAGTGATTGA+TGG | - | chr3.3:86333907-86333926 | MS.gene42684:intron | 45.0% | |
| CCATGATATTCCTTGGTACG+AGG | - | chr3.3:86333458-86333477 | MS.gene42684:intron | 45.0% | |
| CCCCAAGTATCAGCAAAAGA+TGG | + | chr3.3:86336200-86336219 | None:intergenic | 45.0% | |
| CCTCGTACCAAGGAATATCA+TGG | + | chr3.3:86333461-86333480 | None:intergenic | 45.0% | |
| GATACTTGGGGATTGGGTTA+TGG | - | chr3.3:86336209-86336228 | MS.gene42684:intron | 45.0% | |
| GCATCTTCCCATCAATCACT+AGG | + | chr3.3:86333918-86333937 | None:intergenic | 45.0% | |
| GGGGAATTGCTCTATCTAAC+TGG | - | chr3.3:86336408-86336427 | MS.gene42684:intron | 45.0% | |
| GTGAGTTAACTCAACTCACG+CGG | - | chr3.3:86334923-86334942 | MS.gene42684:intron | 45.0% | |
| TAACAAGGTCCACCTTCAAC+TGG | + | chr3.3:86335778-86335797 | None:intergenic | 45.0% | |
| TACTTGGGGTGACATAAGAG+AGG | + | chr3.3:86333991-86334010 | None:intergenic | 45.0% | |
| TCGATAACTTCCTCGTACCA+AGG | + | chr3.3:86333471-86333490 | None:intergenic | 45.0% | |
| TGATAAGTAACACCGTGTCC+AGG | + | chr3.3:86336646-86336665 | None:intergenic | 45.0% | |
| TGCTCTATCTAACTGGTGAC+TGG | - | chr3.3:86336415-86336434 | MS.gene42684:intron | 45.0% | |
| TGGTACCCAACGAAACTTCA+TGG | + | chr3.3:86335492-86335511 | None:intergenic | 45.0% | |
| TGTCATTGAGCTTGAGCTTC+AGG | + | chr3.3:86335834-86335853 | None:intergenic | 45.0% | |
| TGTTCATGGTGGTAGATGAG+TGG | + | chr3.3:86336443-86336462 | None:intergenic | 45.0% | |
| TTACGTGAGTTAACTCACGC+AGG | - | chr3.3:86334295-86334314 | MS.gene42684:CDS | 45.0% | |
| ! | GCTAGATTTGTTCCTGGACA+CGG | - | chr3.3:86336631-86336650 | MS.gene42684:CDS | 45.0% |
| ! | GGTATTTTCGGAATGGTTGC+AGG | - | chr3.3:86335029-86335048 | MS.gene42684:intron | 45.0% |
| ! | GGTATTTTCGGAATGGTTGC+AGG | + | chr3.3:86335048-86335029 | None:intergenic | 45.0% |
| ! | TCAAAGTGGTGGTGATCATG+AGG | - | chr3.3:86334577-86334596 | MS.gene42684:intron | 45.0% |
| ! | TTGAGTTTGTTTGGGACCAG+AGG | - | chr3.3:86334623-86334642 | MS.gene42684:CDS | 45.0% |
| !! | ATAATGGTTGGTCTGAAGCC+TGG | + | chr3.3:86336341-86336360 | None:intergenic | 45.0% |
| !!! | AACTAGCGCAGGGGTATTTT+CGG | - | chr3.3:86335017-86335036 | MS.gene42684:intron | 45.0% |
| !!! | AACTAGCGCAGGGGTATTTT+CGG | + | chr3.3:86335036-86335017 | None:intergenic | 45.0% |
| AGGTTTCTTGACGCACAAGG+AGG | - | chr3.3:86336010-86336029 | MS.gene42684:intron | 50.0% | |
| CTTGGGGTGACATAAGAGAG+GGG | + | chr3.3:86333989-86334008 | None:intergenic | 50.0% | |
| TGCGCTAGTTAACTAGCGCA+GGG | - | chr3.3:86334182-86334201 | MS.gene42684:CDS | 50.0% | |
| TGCGCTAGTTAACTAGCGCA+GGG | + | chr3.3:86334201-86334182 | None:intergenic | 50.0% | |
| TGTGAGTTGTGTTGTGGCTG+TGG | + | chr3.3:86333543-86333562 | None:intergenic | 50.0% | |
| TTGCGCTAGTTAACTAGCGC+AGG | - | chr3.3:86335006-86335025 | MS.gene42684:intron | 50.0% | |
| TTGCGCTAGTTAACTAGCGC+AGG | + | chr3.3:86335025-86335006 | None:intergenic | 50.0% | |
| TTGGGGTGACATAAGAGAGG+GGG | + | chr3.3:86333988-86334007 | None:intergenic | 50.0% | |
| TTGTGCGTCAAGAAACCTGC+CGG | + | chr3.3:86336008-86336027 | None:intergenic | 50.0% | |
| ! | AGTTTGTTTGGGACCAGAGG+TGG | - | chr3.3:86334626-86334645 | MS.gene42684:CDS | 50.0% |
| AGGTGAAGGGTCTGCTGCTA+GGG | - | chr3.3:86335133-86335152 | MS.gene42684:intron | 55.0% | |
| GACTTGGCAGACCCAGTTGA+AGG | - | chr3.3:86335763-86335782 | MS.gene42684:intron | 55.0% | |
| GCGCTAGTTAACTAGCGCAG+GGG | - | chr3.3:86335008-86335027 | MS.gene42684:intron | 55.0% | |
| GCGCTAGTTAACTAGCGCAG+GGG | + | chr3.3:86335027-86335008 | None:intergenic | 55.0% | |
| GGCAGGTTTCTTGACGCACA+AGG | - | chr3.3:86336007-86336026 | MS.gene42684:intron | 55.0% | |
| TTGGCAGACCCAGTTGAAGG+TGG | - | chr3.3:86335766-86335785 | MS.gene42684:intron | 55.0% | |
| ! | TTGTTTGGGACCAGAGGTGG+TGG | - | chr3.3:86334629-86334648 | MS.gene42684:CDS | 55.0% |
| !! | TCTAAGAGCACCACCACCTC+TGG | + | chr3.3:86334642-86334661 | None:intergenic | 55.0% |
| !!! | GCGCAGGGGTATTTTCGGAA+TGG | - | chr3.3:86335022-86335041 | MS.gene42684:intron | 55.0% |
| !!! | GCGCAGGGGTATTTTCGGAA+TGG | + | chr3.3:86335041-86335022 | None:intergenic | 55.0% |
| GAGGTGAAGGGTCTGCTGCT+AGG | - | chr3.3:86335132-86335151 | MS.gene42684:intron | 60.0% | |
| ! | AGGGCGCGAGTGATTTGTGC+TGG | - | chr3.3:86335049-86335068 | MS.gene42684:intron | 60.0% |
| ! | AGGGCGCGAGTGATTTGTGC+TGG | + | chr3.3:86335068-86335049 | None:intergenic | 60.0% |
| ! | GGGCGCGAGTGATTTGTGCT+GGG | - | chr3.3:86335050-86335069 | MS.gene42684:intron | 60.0% |
| ! | GGGCGCGAGTGATTTGTGCT+GGG | + | chr3.3:86335069-86335050 | None:intergenic | 60.0% |
| CTTGTACAGGCTGGACCGGC+AGG | - | chr3.3:86335990-86336009 | MS.gene42684:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86333369 | 86336672 | 86333369 | ID=MS.gene42684 |
| chr3.3 | mRNA | 86333369 | 86336672 | 86333369 | ID=MS.gene42684.t1;Parent=MS.gene42684 |
| chr3.3 | exon | 86336518 | 86336672 | 86336518 | ID=MS.gene42684.t1.exon1;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86336518 | 86336672 | 86336518 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86336222 | 86336288 | 86336222 | ID=MS.gene42684.t1.exon2;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86336222 | 86336288 | 86336222 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86336034 | 86336128 | 86336034 | ID=MS.gene42684.t1.exon3;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86336034 | 86336128 | 86336034 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86334833 | 86334935 | 86334833 | ID=MS.gene42684.t1.exon4;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86334833 | 86334935 | 86334833 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86334617 | 86334705 | 86334617 | ID=MS.gene42684.t1.exon5;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86334617 | 86334705 | 86334617 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86334168 | 86334324 | 86334168 | ID=MS.gene42684.t1.exon6;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86334168 | 86334324 | 86334168 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86333967 | 86334042 | 86333967 | ID=MS.gene42684.t1.exon7;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86333967 | 86334042 | 86333967 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86333755 | 86333870 | 86333755 | ID=MS.gene42684.t1.exon8;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86333755 | 86333870 | 86333755 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86333563 | 86333699 | 86333563 | ID=MS.gene42684.t1.exon9;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86333563 | 86333699 | 86333563 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| chr3.3 | exon | 86333369 | 86333447 | 86333369 | ID=MS.gene42684.t1.exon10;Parent=MS.gene42684.t1 |
| chr3.3 | CDS | 86333369 | 86333447 | 86333369 | ID=cds.MS.gene42684.t1;Parent=MS.gene42684.t1 |
| Gene Sequence |
| Protein sequence |
