Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43216.t1 | XP_013457859.1 | 98.6 | 629 | 9 | 0 | 1 | 629 | 69 | 697 | 0.00E+00 | 1265.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43216.t1 | Q9SSG3 | 66.7 | 634 | 195 | 5 | 1 | 626 | 66 | 691 | 2.0e-256 | 886.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43216.t1 | A0A072V1D2 | 98.6 | 629 | 9 | 0 | 1 | 629 | 69 | 697 | 0.0e+00 | 1265.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050133 | MS.gene43216 | 0.81192 | 5.50E-51 | -1.69E-46 |
MS.gene050553 | MS.gene43216 | -0.854035 | 1.61E-61 | -1.69E-46 |
MS.gene051525 | MS.gene43216 | -0.801781 | 7.66E-49 | -1.69E-46 |
MS.gene051552 | MS.gene43216 | 0.825315 | 5.01E-54 | -1.69E-46 |
MS.gene052469 | MS.gene43216 | -0.81407 | 1.86E-51 | -1.69E-46 |
MS.gene053169 | MS.gene43216 | -0.806068 | 9.84E-50 | -1.69E-46 |
MS.gene05494 | MS.gene43216 | -0.814577 | 1.44E-51 | -1.69E-46 |
MS.gene055158 | MS.gene43216 | 0.814115 | 1.82E-51 | -1.69E-46 |
MS.gene055159 | MS.gene43216 | 0.861752 | 8.23E-64 | -1.69E-46 |
MS.gene055741 | MS.gene43216 | -0.837723 | 4.39E-57 | -1.69E-46 |
MS.gene055744 | MS.gene43216 | -0.840675 | 7.54E-58 | -1.69E-46 |
MS.gene058120 | MS.gene43216 | -0.843791 | 1.13E-58 | -1.69E-46 |
MS.gene058418 | MS.gene43216 | 0.815694 | 8.11E-52 | -1.69E-46 |
MS.gene058444 | MS.gene43216 | -0.809976 | 1.45E-50 | -1.69E-46 |
MS.gene058700 | MS.gene43216 | -0.81637 | 5.73E-52 | -1.69E-46 |
MS.gene059303 | MS.gene43216 | -0.819969 | 8.78E-53 | -1.69E-46 |
MS.gene059922 | MS.gene43216 | 0.829753 | 4.32E-55 | -1.69E-46 |
MS.gene060372 | MS.gene43216 | -0.811304 | 7.49E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43216.t1 | MTR_4g107400 | 98.569 | 629 | 9 | 0 | 1 | 629 | 69 | 697 | 0.0 | 1283 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43216.t1 | AT1G74790 | 67.147 | 624 | 189 | 5 | 1 | 616 | 66 | 681 | 0.0 | 863 |
MS.gene43216.t1 | AT5G62630 | 62.019 | 624 | 206 | 8 | 1 | 607 | 68 | 677 | 0.0 | 785 |
MS.gene43216.t1 | AT5G39970 | 58.541 | 603 | 227 | 8 | 8 | 603 | 60 | 646 | 0.0 | 741 |
MS.gene43216.t1 | AT5G39970 | 58.541 | 603 | 227 | 8 | 8 | 603 | 73 | 659 | 0.0 | 740 |
MS.gene43216.t1 | AT5G39970 | 58.954 | 497 | 186 | 6 | 8 | 500 | 73 | 555 | 0.0 | 630 |
Find 183 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGCCGTTGTTTGCAAAATT+TGG | 0.093490 | 8.4:-19516760 | None:intergenic |
ATCCTTCATTCTTGTTTATT+TGG | 0.094526 | 8.4:-19518314 | None:intergenic |
GAATTGGATTTATGGATTTA+AGG | 0.142580 | 8.4:-19518266 | None:intergenic |
GGCTTATGCCTTGAGAAAAT+TGG | 0.146095 | 8.4:+19516529 | MS.gene43216:CDS |
AATCCTAAGGCCCATATTTC+AGG | 0.198218 | 8.4:-19517688 | None:intergenic |
CAAGCAGTGATTTCTTGTTT+TGG | 0.219887 | 8.4:-19517228 | None:intergenic |
ATCTTTACGCGGGTGCGCTT+TGG | 0.219972 | 8.4:+19518981 | MS.gene43216:CDS |
GTAAACAGCTCGCCTGAATA+AGG | 0.226039 | 8.4:-19516175 | None:intergenic |
TCCTTCATTCTTGTTTATTT+GGG | 0.235668 | 8.4:-19518313 | None:intergenic |
AAAGCATACTGATTGATTAT+TGG | 0.243520 | 8.4:-19516455 | None:intergenic |
AAGATCTGGAGCCTGAAATA+TGG | 0.289679 | 8.4:+19517677 | MS.gene43216:CDS |
ACCCATTTGAGTAGCTTCTA+TGG | 0.290723 | 8.4:+19519286 | MS.gene43216:CDS |
GCAGCTTTCATCTTTATTGT+TGG | 0.292030 | 8.4:+19519321 | MS.gene43216:CDS |
TAGAGGTGTGACCCTTATTC+AGG | 0.292454 | 8.4:+19516163 | MS.gene43216:intron |
ATGACTTCTGCTCTGAAGTA+TGG | 0.295903 | 8.4:+19516281 | MS.gene43216:CDS |
CGAGTCAAATGGGGAAAGTT+TGG | 0.296402 | 8.4:+19516611 | MS.gene43216:CDS |
AAGTTAGTAAACTTGGACTT+TGG | 0.298827 | 8.4:+19517611 | MS.gene43216:CDS |
GTTTATATTCTTGCAAGTTC+TGG | 0.302709 | 8.4:+19519163 | MS.gene43216:CDS |
TCTTTACGCGGGTGCGCTTT+GGG | 0.310364 | 8.4:+19518982 | MS.gene43216:CDS |
CCACCGTGTTGAGATGTAAA+TGG | 0.312281 | 8.4:-19517121 | None:intergenic |
ATAATCAATCAGTATGCTTT+GGG | 0.312395 | 8.4:+19516458 | MS.gene43216:CDS |
AATTGGATTTATGGATTTAA+GGG | 0.316481 | 8.4:-19518265 | None:intergenic |
TGTCCTCCTGATCCTTCTTC+AGG | 0.320055 | 8.4:-19516646 | None:intergenic |
TTACTAGTACCTATCTTTGA+TGG | 0.350428 | 8.4:-19516868 | None:intergenic |
TTATTCAGGCGAGCTGTTTA+CGG | 0.352655 | 8.4:+19516177 | MS.gene43216:CDS |
ATCACAAAAGGTGGAAACTA+TGG | 0.353305 | 8.4:+19518180 | MS.gene43216:CDS |
GAATGGATCTTATCTCAATA+TGG | 0.354342 | 8.4:+19516552 | MS.gene43216:CDS |
CACGGTGGTCAGATACTCTT+TGG | 0.356198 | 8.4:+19517136 | MS.gene43216:CDS |
AATAATCAATCAGTATGCTT+TGG | 0.356937 | 8.4:+19516457 | MS.gene43216:CDS |
TGATACTCAATTTGGAATGA+TGG | 0.358990 | 8.4:+19516723 | MS.gene43216:CDS |
AGTTAGTAAACTTGGACTTT+GGG | 0.361263 | 8.4:+19517612 | MS.gene43216:CDS |
GCTTTGCAATTCTGCCATTC+CGG | 0.363882 | 8.4:+19516228 | MS.gene43216:CDS |
CTATGGCTGGCGTGTATATG+AGG | 0.364427 | 8.4:+19518197 | MS.gene43216:CDS |
ATGACTGATCCTTGCATGTT+TGG | 0.370498 | 8.4:+19518372 | MS.gene43216:CDS |
TTAACTGTAATAAAGATAAA+TGG | 0.372614 | 8.4:+19516797 | MS.gene43216:CDS |
CCTTGTAAGGAAGGGGAAAA+TGG | 0.377761 | 8.4:-19516337 | None:intergenic |
CATTCTTGTTTATTTGGGAA+TGG | 0.393620 | 8.4:-19518308 | None:intergenic |
GCTTATGCCTTGAGAAAATT+GGG | 0.396776 | 8.4:+19516530 | MS.gene43216:CDS |
TTCATTCAGTTTGGTTGCAT+TGG | 0.399995 | 8.4:-19516386 | None:intergenic |
AAGAGCTGGAAGGGAGCTAC+TGG | 0.401179 | 8.4:-19519101 | None:intergenic |
CGCGTTCTTCTCGAGTCAAA+TGG | 0.401407 | 8.4:+19516600 | MS.gene43216:CDS |
TCCACTATTTGAAGGATCTT+CGG | 0.407251 | 8.4:-19519011 | None:intergenic |
AGATCTTTATCTTCACTGAA+TGG | 0.411884 | 8.4:-19517661 | None:intergenic |
AGAAGGATCAGGAGGACAAT+TGG | 0.415576 | 8.4:+19516651 | MS.gene43216:CDS |
GAAGGATCAGCATCAATTAC+CGG | 0.415592 | 8.4:+19518330 | MS.gene43216:CDS |
TTGCCACAGTTCATTCAGTT+TGG | 0.416205 | 8.4:-19516395 | None:intergenic |
ATTGCAGAATATACTGCTAA+TGG | 0.420026 | 8.4:+19516922 | MS.gene43216:CDS |
AGTAGCTCCCTTCCAGCTCT+TGG | 0.420155 | 8.4:+19519103 | MS.gene43216:CDS |
GTGAAATTTCCACTATTTGA+AGG | 0.422937 | 8.4:-19519019 | None:intergenic |
AAATGCGTACCGAGGATGGC+TGG | 0.424046 | 8.4:-19516954 | None:intergenic |
GGAATGGTTGTATCCTGCTA+TGG | 0.426023 | 8.4:-19518292 | None:intergenic |
AAGTATAAATACCCATCATT+AGG | 0.427362 | 8.4:-19517160 | None:intergenic |
TCCACCTCCTTGACCTTGTA+AGG | 0.427515 | 8.4:-19516350 | None:intergenic |
TGTAATAAAGATAAATGGTC+TGG | 0.438396 | 8.4:+19516802 | MS.gene43216:CDS |
ATCCATAGAAGCTACTCAAA+TGG | 0.438891 | 8.4:-19519288 | None:intergenic |
GAGCCTGAAATATGGGCCTT+AGG | 0.440881 | 8.4:+19517685 | MS.gene43216:CDS |
CACTGCTTGGAAAGGTTATG+AGG | 0.441646 | 8.4:+19517242 | MS.gene43216:CDS |
TTTGATTGAGAAGAATTTGC+CGG | 0.444403 | 8.4:-19516247 | None:intergenic |
AGTTAAACGAAGCGAAGAAT+CGG | 0.448068 | 8.4:-19516780 | None:intergenic |
TTGGTTGCATTGGTATTAGC+TGG | 0.449607 | 8.4:-19516376 | None:intergenic |
ACCGAAGATCCTTCAAATAG+TGG | 0.450164 | 8.4:+19519010 | MS.gene43216:CDS |
TCACTGAATGGATTATCCTT+AGG | 0.453217 | 8.4:-19517649 | None:intergenic |
ATGGGAGATGGAGGAGGTAC+AGG | 0.459539 | 8.4:+19517187 | MS.gene43216:CDS |
GGTGCTGAATCACACGGTAT+AGG | 0.460431 | 8.4:-19519079 | None:intergenic |
GAATGGTTGTATCCTGCTAT+GGG | 0.460676 | 8.4:-19518291 | None:intergenic |
TAAACAGCTCGCCTGAATAA+GGG | 0.463660 | 8.4:-19516174 | None:intergenic |
GCGTTCTTCTCGAGTCAAAT+GGG | 0.465575 | 8.4:+19516601 | MS.gene43216:CDS |
TCCATAGAAGCTACTCAAAT+GGG | 0.467430 | 8.4:-19519287 | None:intergenic |
TCATTGTTACGTAATGCAAC+AGG | 0.467645 | 8.4:-19516487 | None:intergenic |
GATACTCAATTTGGAATGAT+GGG | 0.468125 | 8.4:+19516724 | MS.gene43216:CDS |
AATTGTGATCCATCAAAGAT+AGG | 0.471816 | 8.4:+19516859 | MS.gene43216:CDS |
GGCAAATTCTTCTCAATCAA+AGG | 0.479253 | 8.4:+19516249 | MS.gene43216:CDS |
ATACTCTTTGGACCTAATGA+TGG | 0.480182 | 8.4:+19517148 | MS.gene43216:CDS |
GCATCAGAAGTTAGTAAACT+TGG | 0.481138 | 8.4:+19517604 | MS.gene43216:CDS |
TCCTTACAAGGTCAAGGAGG+TGG | 0.481994 | 8.4:+19516349 | MS.gene43216:CDS |
TTACACTTGCTCACAGGAAA+AGG | 0.483859 | 8.4:+19519219 | MS.gene43216:CDS |
CCAAGGATTTCTTAATCCTA+AGG | 0.484371 | 8.4:-19517701 | None:intergenic |
AGATCTGGAGCCTGAAATAT+GGG | 0.484427 | 8.4:+19517678 | MS.gene43216:CDS |
AACGCGCGGTTTGAGCCATC+AGG | 0.489900 | 8.4:-19516583 | None:intergenic |
ATTCAGTGAAGATAAAGATC+TGG | 0.490361 | 8.4:+19517663 | MS.gene43216:CDS |
CAAGTGTAACTGCAGCGACT+TGG | 0.493915 | 8.4:-19519205 | None:intergenic |
GATAAATGGTCTGGCTGCAA+TGG | 0.494029 | 8.4:+19516811 | MS.gene43216:CDS |
AATCGTGTGCACAGCTGAAA+GGG | 0.494341 | 8.4:-19519054 | None:intergenic |
AATATTCTTCTCACCTCAGT+TGG | 0.497203 | 8.4:-19517085 | None:intergenic |
CACCGGGTCCCAGCCATCCT+CGG | 0.497508 | 8.4:+19516945 | MS.gene43216:CDS |
CAAAGCACGGGAACTGATCT+CGG | 0.501259 | 8.4:-19516211 | None:intergenic |
TCCCCTTCCTTACAAGGTCA+AGG | 0.506555 | 8.4:+19516343 | MS.gene43216:CDS |
TGAGAAGGAGAAGGAGAAGG+AGG | 0.507214 | 8.4:-19519259 | None:intergenic |
GAAAAGATGTATCCAAGAGC+TGG | 0.508362 | 8.4:-19519115 | None:intergenic |
GAATATACTGCTAATGGCAC+CGG | 0.510299 | 8.4:+19516928 | MS.gene43216:CDS |
TTAAGGGATGTATTTCCTCC+AGG | 0.512084 | 8.4:-19518249 | None:intergenic |
TGGGTATTTATACTTCATGA+TGG | 0.512223 | 8.4:+19517168 | MS.gene43216:CDS |
TGATTTCAAAAGTGAGGCAC+AGG | 0.514224 | 8.4:-19515336 | None:intergenic |
GGTGACTCTGTAGTAGTGAA+TGG | 0.514388 | 8.4:-19518228 | None:intergenic |
TTGAGAAGAATTTGCCGGAA+TGG | 0.521295 | 8.4:-19516242 | None:intergenic |
TTGGCAACTATTCCTGAAGA+AGG | 0.522185 | 8.4:+19516634 | MS.gene43216:CDS |
ACTATTCCTGAAGAAGGATC+AGG | 0.522978 | 8.4:+19516640 | MS.gene43216:CDS |
AATATGGTTGCTCATCCTGA+TGG | 0.523113 | 8.4:+19516568 | MS.gene43216:CDS |
TCCCAAATAAACAAGAATGA+AGG | 0.524278 | 8.4:+19518312 | MS.gene43216:CDS |
TGCCTTGAGAAAATTGGGAA+TGG | 0.524502 | 8.4:+19516535 | MS.gene43216:CDS |
TTATACTTCATGATGGGAGA+TGG | 0.525044 | 8.4:+19517175 | MS.gene43216:CDS |
CCTCCTTGACCTTGTAAGGA+AGG | 0.527037 | 8.4:-19516346 | None:intergenic |
CCTTAGGATTAAGAAATCCT+TGG | 0.528645 | 8.4:+19517701 | MS.gene43216:CDS |
GCATGAGAAGGAGAAGGAGA+AGG | 0.529029 | 8.4:-19519262 | None:intergenic |
TTTCTCAAGGCATAAGCCAT+GGG | 0.529664 | 8.4:-19516524 | None:intergenic |
ATGGTTGTATCCTGCTATGG+GGG | 0.535626 | 8.4:-19518289 | None:intergenic |
CACCGTGTTGAGATGTAAAT+GGG | 0.536248 | 8.4:-19517120 | None:intergenic |
GAGGTGGATCTCATCACAAA+AGG | 0.536322 | 8.4:+19518168 | MS.gene43216:CDS |
CTCAAATGGGTTGCATGAGA+AGG | 0.539780 | 8.4:-19519274 | None:intergenic |
TACCGAGGATGGCTGGGACC+CGG | 0.540836 | 8.4:-19516947 | None:intergenic |
GGGTAGCTACTCAATTCCTA+AGG | 0.541434 | 8.4:+19517633 | MS.gene43216:CDS |
CCGCGTAAAGATCAGCATAC+AGG | 0.543963 | 8.4:-19518970 | None:intergenic |
CTCCTTGACCTTGTAAGGAA+GGG | 0.545146 | 8.4:-19516345 | None:intergenic |
GGGTATTTATACTTCATGAT+GGG | 0.547309 | 8.4:+19517169 | MS.gene43216:CDS |
CAAAACAAGAAATCACTGCT+TGG | 0.552540 | 8.4:+19517229 | MS.gene43216:CDS |
TTCTTCTCAATCAAAGGCAT+CGG | 0.554545 | 8.4:+19516255 | MS.gene43216:CDS |
GATGTATCCAAGAGCTGGAA+GGG | 0.554726 | 8.4:-19519110 | None:intergenic |
GAATCGTGTGCACAGCTGAA+AGG | 0.555049 | 8.4:-19519055 | None:intergenic |
TCCTTGACCTTGTAAGGAAG+GGG | 0.555746 | 8.4:-19516344 | None:intergenic |
AAGGATCAGCATCAATTACC+GGG | 0.560639 | 8.4:+19518331 | MS.gene43216:CDS |
GCAGGATCTTTATGAAGAGG+TGG | 0.561327 | 8.4:+19518152 | MS.gene43216:intron |
TGACTTCTGCTCTGAAGTAT+GGG | 0.561516 | 8.4:+19516282 | MS.gene43216:CDS |
TCAAATGGGGAAAGTTTGGT+TGG | 0.561969 | 8.4:+19516615 | MS.gene43216:CDS |
TCAAAGATAGGTACTAGTAA+TGG | 0.562846 | 8.4:+19516871 | MS.gene43216:CDS |
AATGCGTACCGAGGATGGCT+GGG | 0.565129 | 8.4:-19516953 | None:intergenic |
ATGGCAGAATTGCAAAGCAC+GGG | 0.566834 | 8.4:-19516223 | None:intergenic |
TACTCTTTGGACCTAATGAT+GGG | 0.568455 | 8.4:+19517149 | MS.gene43216:CDS |
CTGATCCTTGCATGTTTGGA+AGG | 0.568512 | 8.4:+19518376 | MS.gene43216:CDS |
CTGCAGTTACACTTGCTCAC+AGG | 0.577089 | 8.4:+19519213 | MS.gene43216:CDS |
CAAAAGGTGGAAACTATGGC+TGG | 0.578685 | 8.4:+19518184 | MS.gene43216:CDS |
CAAGAAATCACTGCTTGGAA+AGG | 0.578885 | 8.4:+19517234 | MS.gene43216:CDS |
TGATCAGTTAGATCAACAAA+GGG | 0.581281 | 8.4:-19516691 | None:intergenic |
ATCAATCAGTATGCTTTGGG+GGG | 0.581486 | 8.4:+19516461 | MS.gene43216:CDS |
TTTGCAGGATCTTTATGAAG+AGG | 0.581556 | 8.4:+19518149 | MS.gene43216:intron |
TTGATCAGTTAGATCAACAA+AGG | 0.586446 | 8.4:-19516692 | None:intergenic |
CCTGTATGCTGATCTTTACG+CGG | 0.587393 | 8.4:+19518970 | MS.gene43216:CDS |
TACTTCATGATGGGAGATGG+AGG | 0.588622 | 8.4:+19517178 | MS.gene43216:CDS |
AATGGTTGTATCCTGCTATG+GGG | 0.592212 | 8.4:-19518290 | None:intergenic |
AATGGCAGAATTGCAAAGCA+CGG | 0.592355 | 8.4:-19516224 | None:intergenic |
GTTAGTAAACTTGGACTTTG+GGG | 0.593490 | 8.4:+19517613 | MS.gene43216:CDS |
AATCAATCAGTATGCTTTGG+GGG | 0.596322 | 8.4:+19516460 | MS.gene43216:CDS |
TTTGAAATCAATACTTTGTG+CGG | 0.598518 | 8.4:+19515349 | MS.gene43216:CDS |
AAGTATTGATTTCAAAAGTG+AGG | 0.602252 | 8.4:-19515342 | None:intergenic |
AAACATGCAAGGATCAGTCA+TGG | 0.603030 | 8.4:-19518370 | None:intergenic |
GTGAGAAGAATATTTACCAT+GGG | 0.612605 | 8.4:+19517094 | MS.gene43216:CDS |
TTCATGATGGGAGATGGAGG+AGG | 0.613543 | 8.4:+19517181 | MS.gene43216:CDS |
GTGGATCTCATCACAAAAGG+TGG | 0.614554 | 8.4:+19518171 | MS.gene43216:CDS |
TGGGTTGCATGAGAAGGAGA+AGG | 0.614869 | 8.4:-19519268 | None:intergenic |
TATGGCTGGCGTGTATATGA+GGG | 0.615153 | 8.4:+19518198 | MS.gene43216:CDS |
AGATGTATCCAAGAGCTGGA+AGG | 0.615410 | 8.4:-19519111 | None:intergenic |
AATATACTGCTAATGGCACC+GGG | 0.617544 | 8.4:+19516929 | MS.gene43216:CDS |
GAATCAAAACTGCATCGCCA+AGG | 0.619294 | 8.4:-19517718 | None:intergenic |
TCAAGGCATAAGCCATGGGG+AGG | 0.619341 | 8.4:-19516520 | None:intergenic |
TCAATCAGTATGCTTTGGGG+GGG | 0.625661 | 8.4:+19516462 | MS.gene43216:CDS |
TTCACTACTACAGAGTCACC+TGG | 0.628037 | 8.4:+19518231 | MS.gene43216:CDS |
CAGTACCTTCCAAACATGCA+AGG | 0.628525 | 8.4:-19518381 | None:intergenic |
TAATCAATCAGTATGCTTTG+GGG | 0.629409 | 8.4:+19516459 | MS.gene43216:CDS |
AGAGCTGGAAGGGAGCTACT+GGG | 0.631308 | 8.4:-19519100 | None:intergenic |
GTAGAAATGCGTACCGAGGA+TGG | 0.634150 | 8.4:-19516958 | None:intergenic |
CAAGGCATAAGCCATGGGGA+GGG | 0.635947 | 8.4:-19516519 | None:intergenic |
GGTGAGAAGAATATTTACCA+TGG | 0.637027 | 8.4:+19517093 | MS.gene43216:CDS |
GAGACTATTATCCCTCCCCA+TGG | 0.639990 | 8.4:+19516508 | MS.gene43216:CDS |
TGGTTGTATCCTGCTATGGG+GGG | 0.641288 | 8.4:-19518288 | None:intergenic |
ACTATTTGAAGGATCTTCGG+TGG | 0.642163 | 8.4:-19519008 | None:intergenic |
AGATGTAAATGGGAGTCCCA+TGG | 0.648481 | 8.4:-19517110 | None:intergenic |
AGCGACTTGGACGAACAACT+CGG | 0.648898 | 8.4:-19519192 | None:intergenic |
CTGTATGCTGATCTTTACGC+GGG | 0.649982 | 8.4:+19518971 | MS.gene43216:CDS |
GGATCGATAAACATATCCCC+CGG | 0.650551 | 8.4:-19518349 | None:intergenic |
CTCCCATTTACATCTCAACA+CGG | 0.653139 | 8.4:+19517118 | MS.gene43216:CDS |
CGTTCTTCTCGAGTCAAATG+GGG | 0.658120 | 8.4:+19516602 | MS.gene43216:CDS |
ATTCCTGAAGAAGGATCAGG+AGG | 0.666234 | 8.4:+19516643 | MS.gene43216:CDS |
TACAAGTGCTAAACCAACTG+AGG | 0.669482 | 8.4:+19517072 | MS.gene43216:CDS |
TTCTCAAGGCATAAGCCATG+GGG | 0.670920 | 8.4:-19516523 | None:intergenic |
CACGGGAACTGATCTCGGTG+TGG | 0.672507 | 8.4:-19516206 | None:intergenic |
CCTTCCTTACAAGGTCAAGG+AGG | 0.681764 | 8.4:+19516346 | MS.gene43216:CDS |
AGGATCAGCATCAATTACCG+GGG | 0.688826 | 8.4:+19518332 | MS.gene43216:CDS |
ATAACAGTTTGATATTGACA+CGG | 0.693697 | 8.4:-19516901 | None:intergenic |
CTACTGGGTGCTGAATCACA+CGG | 0.700186 | 8.4:-19519085 | None:intergenic |
GGATCAGCATCAATTACCGG+GGG | 0.710549 | 8.4:+19518333 | MS.gene43216:CDS |
CAACCAAACTGAATGAACTG+TGG | 0.737606 | 8.4:+19516392 | MS.gene43216:CDS |
TTTGACTCGAGAAGAACGCG+CGG | 0.754652 | 8.4:-19516597 | None:intergenic |
ACTACTACAGAGTCACCTGG+AGG | 0.758418 | 8.4:+19518234 | MS.gene43216:CDS |
CCATTTACATCTCAACACGG+TGG | 0.793402 | 8.4:+19517121 | MS.gene43216:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAACTGTAATAAAGATAAA+TGG | + | chr8.4:19516797-19516816 | MS.gene43216:CDS | 15.0% |
!! | TTATTAAAAGTTTATGATTG+AGG | - | chr8.4:19518080-19518099 | None:intergenic | 15.0% |
!!! | AAAGAAAAAGTATATATTCA+AGG | + | chr8.4:19515419-19515438 | MS.gene43216:intron | 15.0% |
!!! | CAATTGATAGTTATTAATAA+GGG | - | chr8.4:19515635-19515654 | None:intergenic | 15.0% |
!!! | GATAAACAAATCTTTTAAAA+GGG | - | chr8.4:19515556-19515575 | None:intergenic | 15.0% |
!!! | TGAATATATACTTTTTCTTT+AGG | - | chr8.4:19515419-19515438 | None:intergenic | 15.0% |
!! | AAACTATTGTTTCATATGTA+TGG | - | chr8.4:19516985-19517004 | None:intergenic | 20.0% |
!! | AAATATAATTGTCAATAGTG+AGG | - | chr8.4:19517566-19517585 | None:intergenic | 20.0% |
!! | AATTGGATTTATGGATTTAA+GGG | - | chr8.4:19518268-19518287 | None:intergenic | 20.0% |
!! | ATGAAACAATAGTTTCTATA+AGG | + | chr8.4:19516990-19517009 | MS.gene43216:intron | 20.0% |
!! | CCTTATTAATAACTATCAAT+TGG | + | chr8.4:19515633-19515652 | MS.gene43216:intron | 20.0% |
!! | TAAAATGTTCTACCAATAAT+TGG | + | chr8.4:19517445-19517464 | MS.gene43216:intron | 20.0% |
!! | TAGAACTATCTAATCATTAT+CGG | + | chr8.4:19517039-19517058 | MS.gene43216:intron | 20.0% |
!! | TTATTAATAAGGGATGTATT+TGG | - | chr8.4:19515625-19515644 | None:intergenic | 20.0% |
!!! | AACTTTTAATAACTTCTACA+AGG | + | chr8.4:19518088-19518107 | MS.gene43216:intron | 20.0% |
!!! | ATTCTTTTTGTTCTCTTAAA+CGG | - | chr8.4:19518019-19518038 | None:intergenic | 20.0% |
!!! | ATTTGTACAGTCTTATATTA+AGG | - | chr8.4:19515579-19515598 | None:intergenic | 20.0% |
!!! | CCAATTGATAGTTATTAATA+AGG | - | chr8.4:19515636-19515655 | None:intergenic | 20.0% |
!!! | GGATAAACAAATCTTTTAAA+AGG | - | chr8.4:19515557-19515576 | None:intergenic | 20.0% |
!!! | GTTTATTTTGATACTCAATT+TGG | + | chr8.4:19516715-19516734 | MS.gene43216:CDS | 20.0% |
!!! | TCATCTTAAAAATTTTGGTT+AGG | - | chr8.4:19518560-19518579 | None:intergenic | 20.0% |
!!! | TGAACTCATCTTAAAAATTT+TGG | - | chr8.4:19518565-19518584 | None:intergenic | 20.0% |
!!! | TTGGTAGAACATTTTATAAA+AGG | - | chr8.4:19517441-19517460 | None:intergenic | 20.0% |
!!! | TTTGTACAGTCTTATATTAA+GGG | - | chr8.4:19515578-19515597 | None:intergenic | 20.0% |
! | AAATTAGGGTTAATGAAACA+TGG | + | chr8.4:19517872-19517891 | MS.gene43216:intron | 25.0% |
! | AAGTAATGGTTAATGAAACT+CGG | - | chr8.4:19517946-19517965 | None:intergenic | 25.0% |
! | AAGTATAAATACCCATCATT+AGG | - | chr8.4:19517163-19517182 | None:intergenic | 25.0% |
! | AATAATCAATCAGTATGCTT+TGG | + | chr8.4:19516457-19516476 | MS.gene43216:CDS | 25.0% |
! | ATAACAGTTTGATATTGACA+CGG | - | chr8.4:19516904-19516923 | None:intergenic | 25.0% |
! | ATAATCAATCAGTATGCTTT+GGG | + | chr8.4:19516458-19516477 | MS.gene43216:CDS | 25.0% |
! | ATATGCATAAAAAGTTCCAA+AGG | + | chr8.4:19515760-19515779 | MS.gene43216:intron | 25.0% |
! | ATATTTATCATGAACCTTTC+AGG | + | chr8.4:19517580-19517599 | MS.gene43216:intron | 25.0% |
! | ATTGTTGAACTGAAAAAAAG+TGG | - | chr8.4:19516101-19516120 | None:intergenic | 25.0% |
! | CTAGATTCTATTCAACTATA+TGG | - | chr8.4:19517486-19517505 | None:intergenic | 25.0% |
! | GAATTGGATTTATGGATTTA+AGG | - | chr8.4:19518269-19518288 | None:intergenic | 25.0% |
! | TAATATGAAAAACCAGATGA+AGG | - | chr8.4:19518430-19518449 | None:intergenic | 25.0% |
! | TATGCATAAAAAGTTCCAAA+GGG | + | chr8.4:19515761-19515780 | MS.gene43216:intron | 25.0% |
! | TGTAATAAAGATAAATGGTC+TGG | + | chr8.4:19516802-19516821 | MS.gene43216:CDS | 25.0% |
!! | AAAGCATACTGATTGATTAT+TGG | - | chr8.4:19516458-19516477 | None:intergenic | 25.0% |
!! | ACAGCATCATATTCTTTTAT+AGG | + | chr8.4:19515478-19515497 | MS.gene43216:intron | 25.0% |
!! | ATCCTTCATTCTTGTTTATT+TGG | - | chr8.4:19518317-19518336 | None:intergenic | 25.0% |
!! | CTATTTTCTCAAACTATTAC+CGG | + | chr8.4:19517336-19517355 | MS.gene43216:intron | 25.0% |
!! | TCCTTCATTCTTGTTTATTT+GGG | - | chr8.4:19518316-19518335 | None:intergenic | 25.0% |
!! | TTGGATACATCTTTTCATTT+GGG | + | chr8.4:19519122-19519141 | MS.gene43216:CDS | 25.0% |
!! | TTTGAAATCAATACTTTGTG+CGG | + | chr8.4:19515349-19515368 | MS.gene43216:CDS | 25.0% |
!!! | AACGATTTTTGTAAAGCATT+TGG | + | chr8.4:19516424-19516443 | MS.gene43216:CDS | 25.0% |
!!! | AAGTATTGATTTCAAAAGTG+AGG | - | chr8.4:19515345-19515364 | None:intergenic | 25.0% |
!!! | TTGTTTTGGGAAAAATTGTA+TGG | - | chr8.4:19517217-19517236 | None:intergenic | 25.0% |
AACATCTCCACAAAAAAAGT+AGG | - | chr8.4:19517755-19517774 | None:intergenic | 30.0% | |
AACTGAAAAAAAGTGGTTAC+TGG | - | chr8.4:19516094-19516113 | None:intergenic | 30.0% | |
AAGTTAGTAAACTTGGACTT+TGG | + | chr8.4:19517611-19517630 | MS.gene43216:CDS | 30.0% | |
AATTGTGATCCATCAAAGAT+AGG | + | chr8.4:19516859-19516878 | MS.gene43216:CDS | 30.0% | |
AGATCTTTATCTTCACTGAA+TGG | - | chr8.4:19517664-19517683 | None:intergenic | 30.0% | |
AGTTAGTAAACTTGGACTTT+GGG | + | chr8.4:19517612-19517631 | MS.gene43216:CDS | 30.0% | |
ATAATTGGTCAAACAAATGC+TGG | + | chr8.4:19517460-19517479 | MS.gene43216:intron | 30.0% | |
ATTCAGTGAAGATAAAGATC+TGG | + | chr8.4:19517663-19517682 | MS.gene43216:CDS | 30.0% | |
ATTGCAGAATATACTGCTAA+TGG | + | chr8.4:19516922-19516941 | MS.gene43216:CDS | 30.0% | |
CAATCTAAGTCACGATATAA+AGG | - | chr8.4:19516020-19516039 | None:intergenic | 30.0% | |
GAATGGATCTTATCTCAATA+TGG | + | chr8.4:19516552-19516571 | MS.gene43216:CDS | 30.0% | |
GCATTTGTTTGACCAATTAT+TGG | - | chr8.4:19517460-19517479 | None:intergenic | 30.0% | |
GGGTATTTATACTTCATGAT+GGG | + | chr8.4:19517169-19517188 | MS.gene43216:CDS | 30.0% | |
GTGAAATTTCCACTATTTGA+AGG | - | chr8.4:19519022-19519041 | None:intergenic | 30.0% | |
GTGAGAAGAATATTTACCAT+GGG | + | chr8.4:19517094-19517113 | MS.gene43216:CDS | 30.0% | |
GTTTATATTCTTGCAAGTTC+TGG | + | chr8.4:19519163-19519182 | MS.gene43216:CDS | 30.0% | |
TAATCAATCAGTATGCTTTG+GGG | + | chr8.4:19516459-19516478 | MS.gene43216:CDS | 30.0% | |
TCAAAGATAGGTACTAGTAA+TGG | + | chr8.4:19516871-19516890 | MS.gene43216:CDS | 30.0% | |
TCCCAAATAAACAAGAATGA+AGG | + | chr8.4:19518312-19518331 | MS.gene43216:CDS | 30.0% | |
TCTATCTAAATTCTGTCACT+CGG | + | chr8.4:19518588-19518607 | MS.gene43216:intron | 30.0% | |
TGAACACACTTATACACAAA+AGG | + | chr8.4:19515678-19515697 | MS.gene43216:intron | 30.0% | |
TGATCAGTTAGATCAACAAA+GGG | - | chr8.4:19516694-19516713 | None:intergenic | 30.0% | |
TGGGTATTTATACTTCATGA+TGG | + | chr8.4:19517168-19517187 | MS.gene43216:CDS | 30.0% | |
TTACTAGTACCTATCTTTGA+TGG | - | chr8.4:19516871-19516890 | None:intergenic | 30.0% | |
TTGATCAGTTAGATCAACAA+AGG | - | chr8.4:19516695-19516714 | None:intergenic | 30.0% | |
TTTGATTGAGAAGAATTTGC+CGG | - | chr8.4:19516250-19516269 | None:intergenic | 30.0% | |
! | AAAACATCGGTTACTAGTAT+AGG | - | chr8.4:19515896-19515915 | None:intergenic | 30.0% |
! | AAGCCTTTTCTTTTCCTTTT+TGG | + | chr8.4:19518404-19518423 | MS.gene43216:intron | 30.0% |
! | ACAACTGCGATTTAAAACAT+CGG | - | chr8.4:19515909-19515928 | None:intergenic | 30.0% |
! | AGTTAAGGACGTTTGAAATT+AGG | + | chr8.4:19517857-19517876 | MS.gene43216:intron | 30.0% |
! | CATCCAAATTTTGCAAACAA+CGG | + | chr8.4:19516757-19516776 | MS.gene43216:CDS | 30.0% |
! | CATTCTTGTTTATTTGGGAA+TGG | - | chr8.4:19518311-19518330 | None:intergenic | 30.0% |
! | CTAACTTTGTTTGTTTGTAG+AGG | + | chr8.4:19516146-19516165 | MS.gene43216:intron | 30.0% |
! | CTAATCATTATCGGATTTTC+AGG | + | chr8.4:19517048-19517067 | MS.gene43216:intron | 30.0% |
! | CTATAAGGTGTTTAATTCAG+TGG | + | chr8.4:19517005-19517024 | MS.gene43216:intron | 30.0% |
! | CTTGGATACATCTTTTCATT+TGG | + | chr8.4:19519121-19519140 | MS.gene43216:CDS | 30.0% |
! | GATACTCAATTTGGAATGAT+GGG | + | chr8.4:19516724-19516743 | MS.gene43216:CDS | 30.0% |
! | GTTAAGGACGTTTGAAATTA+GGG | + | chr8.4:19517858-19517877 | MS.gene43216:intron | 30.0% |
! | TCCAAAGGGTCTTATAAATA+GGG | + | chr8.4:19515775-19515794 | MS.gene43216:intron | 30.0% |
! | TGATACTCAATTTGGAATGA+TGG | + | chr8.4:19516723-19516742 | MS.gene43216:CDS | 30.0% |
! | TTCCAAAGGGTCTTATAAAT+AGG | + | chr8.4:19515774-19515793 | MS.gene43216:intron | 30.0% |
!! | ATGAGTTGTTTCTCATTGAT+TGG | + | chr8.4:19518735-19518754 | MS.gene43216:intron | 30.0% |
!! | GATTTTTGTAAAGCATTTGG+TGG | + | chr8.4:19516427-19516446 | MS.gene43216:CDS | 30.0% |
!! | GTTGATAATGAACGAAGTAA+TGG | - | chr8.4:19517960-19517979 | None:intergenic | 30.0% |
!! | TAGTTACACAATTGATTTGC+AGG | + | chr8.4:19518134-19518153 | MS.gene43216:intron | 30.0% |
!!! | AAACCTTCCTACTTTTTTTG+TGG | + | chr8.4:19517745-19517764 | MS.gene43216:CDS | 30.0% |
!!! | AAGCAGTGATTTCTTGTTTT+GGG | - | chr8.4:19517230-19517249 | None:intergenic | 30.0% |
!!! | CTTTTATAGGAAAGTGTTTG+TGG | + | chr8.4:19515491-19515510 | MS.gene43216:intron | 30.0% |
!!! | GGACTTATTTTAAAACGCTT+TGG | + | chr8.4:19518934-19518953 | MS.gene43216:intron | 30.0% |
!!! | TACTTTTTTTGTGGAGATGT+TGG | + | chr8.4:19517754-19517773 | MS.gene43216:CDS | 30.0% |
AAATCAATACTTTGTGCGGT+AGG | + | chr8.4:19515353-19515372 | MS.gene43216:intron | 35.0% | |
AACACACCAACTGTAGTATT+TGG | - | chr8.4:19518833-19518852 | None:intergenic | 35.0% | |
AACTTCCTTAACAGAGAACT+CGG | - | chr8.4:19517982-19518001 | None:intergenic | 35.0% | |
AAGTGTTTGTACTACTCACT+TGG | - | chr8.4:19517286-19517305 | None:intergenic | 35.0% | |
AAGTTAGCTAGCTACATACA+AGG | - | chr8.4:19516133-19516152 | None:intergenic | 35.0% | |
AATATTCTTCTCACCTCAGT+TGG | - | chr8.4:19517088-19517107 | None:intergenic | 35.0% | |
AATCAATCAGTATGCTTTGG+GGG | + | chr8.4:19516460-19516479 | MS.gene43216:CDS | 35.0% | |
AGGCCAAAAAGGAAAAGAAA+AGG | - | chr8.4:19518410-19518429 | None:intergenic | 35.0% | |
AGTTAAACGAAGCGAAGAAT+CGG | - | chr8.4:19516783-19516802 | None:intergenic | 35.0% | |
ATACTCTTTGGACCTAATGA+TGG | + | chr8.4:19517148-19517167 | MS.gene43216:CDS | 35.0% | |
ATCACAAAAGGTGGAAACTA+TGG | + | chr8.4:19518180-19518199 | MS.gene43216:CDS | 35.0% | |
ATCCATAGAAGCTACTCAAA+TGG | - | chr8.4:19519291-19519310 | None:intergenic | 35.0% | |
ATGTTTGCTCATATTTGCCA+TGG | + | chr8.4:19518912-19518931 | MS.gene43216:intron | 35.0% | |
CAAAACAAGAAATCACTGCT+TGG | + | chr8.4:19517229-19517248 | MS.gene43216:CDS | 35.0% | |
CCAAGGATTTCTTAATCCTA+AGG | - | chr8.4:19517704-19517723 | None:intergenic | 35.0% | |
CCTTAGGATTAAGAAATCCT+TGG | + | chr8.4:19517701-19517720 | MS.gene43216:CDS | 35.0% | |
CTATCTAAATTCTGTCACTC+GGG | + | chr8.4:19518589-19518608 | MS.gene43216:intron | 35.0% | |
GCAGCTTTCATCTTTATTGT+TGG | + | chr8.4:19519321-19519340 | MS.gene43216:CDS | 35.0% | |
GCATCAGAAGTTAGTAAACT+TGG | + | chr8.4:19517604-19517623 | MS.gene43216:CDS | 35.0% | |
GCTTATGCCTTGAGAAAATT+GGG | + | chr8.4:19516530-19516549 | MS.gene43216:CDS | 35.0% | |
GGCAAATTCTTCTCAATCAA+AGG | + | chr8.4:19516249-19516268 | MS.gene43216:CDS | 35.0% | |
GGTGAGAAGAATATTTACCA+TGG | + | chr8.4:19517093-19517112 | MS.gene43216:CDS | 35.0% | |
GGTTAATGAAACATGGAGTT+TGG | + | chr8.4:19517879-19517898 | MS.gene43216:intron | 35.0% | |
GTCACAGAAAGAATAAGATG+TGG | + | chr8.4:19518465-19518484 | MS.gene43216:intron | 35.0% | |
GTGATTCTCTACAATGTTGA+GGG | - | chr8.4:19518808-19518827 | None:intergenic | 35.0% | |
GTTAATGAGTACGGCAATAT+TGG | + | chr8.4:19517901-19517920 | MS.gene43216:intron | 35.0% | |
GTTAGTAAACTTGGACTTTG+GGG | + | chr8.4:19517613-19517632 | MS.gene43216:CDS | 35.0% | |
TAACACTAACATGTCAACAC+CGG | - | chr8.4:19517358-19517377 | None:intergenic | 35.0% | |
TACTCTTTGGACCTAATGAT+GGG | + | chr8.4:19517149-19517168 | MS.gene43216:CDS | 35.0% | |
TCATTGTTACGTAATGCAAC+AGG | - | chr8.4:19516490-19516509 | None:intergenic | 35.0% | |
TCCACTATTTGAAGGATCTT+CGG | - | chr8.4:19519014-19519033 | None:intergenic | 35.0% | |
TCCATAGAAGCTACTCAAAT+GGG | - | chr8.4:19519290-19519309 | None:intergenic | 35.0% | |
TCCCTATTTATAAGACCCTT+TGG | - | chr8.4:19515779-19515798 | None:intergenic | 35.0% | |
TCTCCACAAAAAAAGTAGGA+AGG | - | chr8.4:19517751-19517770 | None:intergenic | 35.0% | |
TCTCTGTTAAGGAAGTTCAA+TGG | + | chr8.4:19517985-19518004 | MS.gene43216:intron | 35.0% | |
TGGAGTTTGGTTAATGAGTA+CGG | + | chr8.4:19517892-19517911 | MS.gene43216:intron | 35.0% | |
TGTGATTCTTCGGAATGTTT+AGG | - | chr8.4:19515947-19515966 | None:intergenic | 35.0% | |
TGTTTGCTCATATTTGCCAT+GGG | + | chr8.4:19518913-19518932 | MS.gene43216:intron | 35.0% | |
TTCATTCAGTTTGGTTGCAT+TGG | - | chr8.4:19516389-19516408 | None:intergenic | 35.0% | |
TTTCAGTTGTGGTCATGATT+TGG | + | chr8.4:19518852-19518871 | MS.gene43216:intron | 35.0% | |
TTTGCAGGATCTTTATGAAG+AGG | + | chr8.4:19518149-19518168 | MS.gene43216:intron | 35.0% | |
! | ATCCATTCCCAATTTTCTCA+AGG | - | chr8.4:19516540-19516559 | None:intergenic | 35.0% |
! | TTATACTTCATGATGGGAGA+TGG | + | chr8.4:19517175-19517194 | MS.gene43216:CDS | 35.0% |
! | TTCTTCTCAATCAAAGGCAT+CGG | + | chr8.4:19516255-19516274 | MS.gene43216:CDS | 35.0% |
!! | CAAGCAGTGATTTCTTGTTT+TGG | - | chr8.4:19517231-19517250 | None:intergenic | 35.0% |
!! | TCACTGAATGGATTATCCTT+AGG | - | chr8.4:19517652-19517671 | None:intergenic | 35.0% |
!!! | GCGTTTTAAAATAAGTCCCA+TGG | - | chr8.4:19518932-19518951 | None:intergenic | 35.0% |
AAACATGCAAGGATCAGTCA+TGG | - | chr8.4:19518373-19518392 | None:intergenic | 40.0% | |
AAACCAGATGAAGGCCAAAA+AGG | - | chr8.4:19518421-19518440 | None:intergenic | 40.0% | |
AAATGCAGCTTGTAAGGTGA+AGG | - | chr8.4:19518521-19518540 | None:intergenic | 40.0% | |
AAGGATCAGCATCAATTACC+GGG | + | chr8.4:19518331-19518350 | MS.gene43216:CDS | 40.0% | |
AATATACTGCTAATGGCACC+GGG | + | chr8.4:19516929-19516948 | MS.gene43216:CDS | 40.0% | |
AATATGGTTGCTCATCCTGA+TGG | + | chr8.4:19516568-19516587 | MS.gene43216:CDS | 40.0% | |
AATCCTAAGGCCCATATTTC+AGG | - | chr8.4:19517691-19517710 | None:intergenic | 40.0% | |
AATGCAGCTTGTAAGGTGAA+GGG | - | chr8.4:19518520-19518539 | None:intergenic | 40.0% | |
AATGGCAGAATTGCAAAGCA+CGG | - | chr8.4:19516227-19516246 | None:intergenic | 40.0% | |
AATGGTTGTATCCTGCTATG+GGG | - | chr8.4:19518293-19518312 | None:intergenic | 40.0% | |
ACCCATTTGAGTAGCTTCTA+TGG | + | chr8.4:19519286-19519305 | MS.gene43216:CDS | 40.0% | |
ACCGAAGATCCTTCAAATAG+TGG | + | chr8.4:19519010-19519029 | MS.gene43216:CDS | 40.0% | |
ACGAAGTGAGTAGCAAAGAT+TGG | + | chr8.4:19515798-19515817 | MS.gene43216:intron | 40.0% | |
ACTATTCCTGAAGAAGGATC+AGG | + | chr8.4:19516640-19516659 | MS.gene43216:CDS | 40.0% | |
ACTATTTGAAGGATCTTCGG+TGG | - | chr8.4:19519011-19519030 | None:intergenic | 40.0% | |
AGTACTACGCAAAAGGTCTA+GGG | - | chr8.4:19515825-19515844 | None:intergenic | 40.0% | |
ATCAACCGAGTTCTCTGTTA+AGG | + | chr8.4:19517974-19517993 | MS.gene43216:intron | 40.0% | |
ATGACTGATCCTTGCATGTT+TGG | + | chr8.4:19518372-19518391 | MS.gene43216:CDS | 40.0% | |
ATGCTTTACATGTCCACTAC+AGG | + | chr8.4:19518614-19518633 | MS.gene43216:intron | 40.0% | |
CAACCAAACTGAATGAACTG+TGG | + | chr8.4:19516392-19516411 | MS.gene43216:CDS | 40.0% | |
CAAGAAATCACTGCTTGGAA+AGG | + | chr8.4:19517234-19517253 | MS.gene43216:CDS | 40.0% | |
CACCGTGTTGAGATGTAAAT+GGG | - | chr8.4:19517123-19517142 | None:intergenic | 40.0% | |
CCATACAAATGCAGCTTGTA+AGG | - | chr8.4:19518527-19518546 | None:intergenic | 40.0% | |
CCTTACAAGCTGCATTTGTA+TGG | + | chr8.4:19518524-19518543 | MS.gene43216:intron | 40.0% | |
CGAAGTGAGTAGCAAAGATT+GGG | + | chr8.4:19515799-19515818 | MS.gene43216:intron | 40.0% | |
CGCATAAGACTGTGATTCTT+CGG | - | chr8.4:19515957-19515976 | None:intergenic | 40.0% | |
CGTGATTCTCTACAATGTTG+AGG | - | chr8.4:19518809-19518828 | None:intergenic | 40.0% | |
CTCCCATTTACATCTCAACA+CGG | + | chr8.4:19517118-19517137 | MS.gene43216:CDS | 40.0% | |
GAAAAAAAGTGGTTACTGGC+AGG | - | chr8.4:19516090-19516109 | None:intergenic | 40.0% | |
GAAAAGATGTATCCAAGAGC+TGG | - | chr8.4:19519118-19519137 | None:intergenic | 40.0% | |
GAAGGATCAGCATCAATTAC+CGG | + | chr8.4:19518330-19518349 | MS.gene43216:CDS | 40.0% | |
GAATATACTGCTAATGGCAC+CGG | + | chr8.4:19516928-19516947 | MS.gene43216:CDS | 40.0% | |
GAATGGTTGTATCCTGCTAT+GGG | - | chr8.4:19518294-19518313 | None:intergenic | 40.0% | |
GATTGATGCAGCCTCATTTA+CGG | + | chr8.4:19515976-19515995 | MS.gene43216:intron | 40.0% | |
GGCTTATGCCTTGAGAAAAT+TGG | + | chr8.4:19516529-19516548 | MS.gene43216:CDS | 40.0% | |
GGTTAATGAAACTCGGTAAG+TGG | - | chr8.4:19517939-19517958 | None:intergenic | 40.0% | |
TAAACAGCTCGCCTGAATAA+GGG | - | chr8.4:19516177-19516196 | None:intergenic | 40.0% | |
TAAACCTGCAACGCTAGTTA+AGG | + | chr8.4:19517842-19517861 | MS.gene43216:intron | 40.0% | |
TAACTTCTGATGCACCTGAA+AGG | - | chr8.4:19517597-19517616 | None:intergenic | 40.0% | |
TACAAGTGCTAAACCAACTG+AGG | + | chr8.4:19517072-19517091 | MS.gene43216:CDS | 40.0% | |
TATGGGGGGAATTGGATTTA+TGG | - | chr8.4:19518277-19518296 | None:intergenic | 40.0% | |
TCAAATGGGGAAAGTTTGGT+TGG | + | chr8.4:19516615-19516634 | MS.gene43216:CDS | 40.0% | |
TCACGACCAAATACTACAGT+TGG | + | chr8.4:19518824-19518843 | MS.gene43216:intron | 40.0% | |
TGATTTCAAAAGTGAGGCAC+AGG | - | chr8.4:19515339-19515358 | None:intergenic | 40.0% | |
TGCCTTGAGAAAATTGGGAA+TGG | + | chr8.4:19516535-19516554 | MS.gene43216:CDS | 40.0% | |
TGCTTTACATGTCCACTACA+GGG | + | chr8.4:19518615-19518634 | MS.gene43216:intron | 40.0% | |
TGTCTCTGTAACCGTAAATG+AGG | - | chr8.4:19515990-19516009 | None:intergenic | 40.0% | |
TTAAGGGATGTATTTCCTCC+AGG | - | chr8.4:19518252-19518271 | None:intergenic | 40.0% | |
TTACACTTGCTCACAGGAAA+AGG | + | chr8.4:19519219-19519238 | MS.gene43216:CDS | 40.0% | |
TTATTCAGGCGAGCTGTTTA+CGG | + | chr8.4:19516177-19516196 | MS.gene43216:CDS | 40.0% | |
TTGAGAAGAATTTGCCGGAA+TGG | - | chr8.4:19516245-19516264 | None:intergenic | 40.0% | |
TTGCCACAGTTCATTCAGTT+TGG | - | chr8.4:19516398-19516417 | None:intergenic | 40.0% | |
TTGGCAACTATTCCTGAAGA+AGG | + | chr8.4:19516634-19516653 | MS.gene43216:CDS | 40.0% | |
TTTCTCAAGGCATAAGCCAT+GGG | - | chr8.4:19516527-19516546 | None:intergenic | 40.0% | |
! | AAAACGCTTTGGTGCATTTC+AGG | + | chr8.4:19518945-19518964 | MS.gene43216:intron | 40.0% |
! | AAGATCTGGAGCCTGAAATA+TGG | + | chr8.4:19517677-19517696 | MS.gene43216:CDS | 40.0% |
! | AGATCTGGAGCCTGAAATAT+GGG | + | chr8.4:19517678-19517697 | MS.gene43216:CDS | 40.0% |
! | ATCAATCAGTATGCTTTGGG+GGG | + | chr8.4:19516461-19516480 | MS.gene43216:CDS | 40.0% |
! | GCAAGAGTTAAGTATTGTGC+TGG | - | chr8.4:19518682-19518701 | None:intergenic | 40.0% |
! | TTGGTTGCATTGGTATTAGC+TGG | - | chr8.4:19516379-19516398 | None:intergenic | 40.0% |
! | TTTTCTCAAGGCATAAGCCA+TGG | - | chr8.4:19516528-19516547 | None:intergenic | 40.0% |
! | TTTTTGTGGAGATGTTGGAC+AGG | + | chr8.4:19517759-19517778 | MS.gene43216:CDS | 40.0% |
!! | AGTTGGTGTGTTTTCAGTTG+TGG | + | chr8.4:19518841-19518860 | MS.gene43216:intron | 40.0% |
!! | ATGAAGCATCGACAAAGACA+GGG | - | chr8.4:19517397-19517416 | None:intergenic | 40.0% |
!! | ATGACTTCTGCTCTGAAGTA+TGG | + | chr8.4:19516281-19516300 | MS.gene43216:CDS | 40.0% |
!! | GTTAGTGTTAGCTTTGTGCT+TGG | + | chr8.4:19517368-19517387 | MS.gene43216:intron | 40.0% |
!! | TATGAAGCATCGACAAAGAC+AGG | - | chr8.4:19517398-19517417 | None:intergenic | 40.0% |
!! | TGACTTCTGCTCTGAAGTAT+GGG | + | chr8.4:19516282-19516301 | MS.gene43216:CDS | 40.0% |
!! | TTTCCTTTTTGGCCTTCATC+TGG | + | chr8.4:19518415-19518434 | MS.gene43216:intron | 40.0% |
AATCGTGTGCACAGCTGAAA+GGG | - | chr8.4:19519057-19519076 | None:intergenic | 45.0% | |
AGAAGGATCAGGAGGACAAT+TGG | + | chr8.4:19516651-19516670 | MS.gene43216:CDS | 45.0% | |
AGATGTAAATGGGAGTCCCA+TGG | - | chr8.4:19517113-19517132 | None:intergenic | 45.0% | |
AGATGTATCCAAGAGCTGGA+AGG | - | chr8.4:19519114-19519133 | None:intergenic | 45.0% | |
AGGATCAGCATCAATTACCG+GGG | + | chr8.4:19518332-19518351 | MS.gene43216:CDS | 45.0% | |
ATGGCAGAATTGCAAAGCAC+GGG | - | chr8.4:19516226-19516245 | None:intergenic | 45.0% | |
ATGGTTGTATCCTGCTATGG+GGG | - | chr8.4:19518292-19518311 | None:intergenic | 45.0% | |
ATTCCTGAAGAAGGATCAGG+AGG | + | chr8.4:19516643-19516662 | MS.gene43216:CDS | 45.0% | |
CAAAAGGTGGAAACTATGGC+TGG | + | chr8.4:19518184-19518203 | MS.gene43216:CDS | 45.0% | |
CACTGCTTGGAAAGGTTATG+AGG | + | chr8.4:19517242-19517261 | MS.gene43216:CDS | 45.0% | |
CAGTACCTTCCAAACATGCA+AGG | - | chr8.4:19518384-19518403 | None:intergenic | 45.0% | |
CATCAAATCGCTTGATGCTG+TGG | + | chr8.4:19518889-19518908 | MS.gene43216:intron | 45.0% | |
CCACCGTGTTGAGATGTAAA+TGG | - | chr8.4:19517124-19517143 | None:intergenic | 45.0% | |
CCATTTACATCTCAACACGG+TGG | + | chr8.4:19517121-19517140 | MS.gene43216:CDS | 45.0% | |
CCTGTATGCTGATCTTTACG+CGG | + | chr8.4:19518970-19518989 | MS.gene43216:CDS | 45.0% | |
CCTTGTAAGGAAGGGGAAAA+TGG | - | chr8.4:19516340-19516359 | None:intergenic | 45.0% | |
CGAGTCAAATGGGGAAAGTT+TGG | + | chr8.4:19516611-19516630 | MS.gene43216:CDS | 45.0% | |
CGGCCGTTGTTTGCAAAATT+TGG | - | chr8.4:19516763-19516782 | None:intergenic | 45.0% | |
CGTTCTTCTCGAGTCAAATG+GGG | + | chr8.4:19516602-19516621 | MS.gene43216:CDS | 45.0% | |
CTCCTTGACCTTGTAAGGAA+GGG | - | chr8.4:19516348-19516367 | None:intergenic | 45.0% | |
CTGATCCTTGCATGTTTGGA+AGG | + | chr8.4:19518376-19518395 | MS.gene43216:CDS | 45.0% | |
CTGTATGCTGATCTTTACGC+GGG | + | chr8.4:19518971-19518990 | MS.gene43216:CDS | 45.0% | |
GAATCAAAACTGCATCGCCA+AGG | - | chr8.4:19517721-19517740 | None:intergenic | 45.0% | |
GAATGCATGCGTCTTTCTTG+AGG | + | chr8.4:19518035-19518054 | MS.gene43216:intron | 45.0% | |
GAGGTGGATCTCATCACAAA+AGG | + | chr8.4:19518168-19518187 | MS.gene43216:CDS | 45.0% | |
GAGTACTACGCAAAAGGTCT+AGG | - | chr8.4:19515826-19515845 | None:intergenic | 45.0% | |
GATAAATGGTCTGGCTGCAA+TGG | + | chr8.4:19516811-19516830 | MS.gene43216:CDS | 45.0% | |
GATGTATCCAAGAGCTGGAA+GGG | - | chr8.4:19519113-19519132 | None:intergenic | 45.0% | |
GCAGGATCTTTATGAAGAGG+TGG | + | chr8.4:19518152-19518171 | MS.gene43216:intron | 45.0% | |
GCGTTCTTCTCGAGTCAAAT+GGG | + | chr8.4:19516601-19516620 | MS.gene43216:CDS | 45.0% | |
GCTAGCTACATACAAGGCAT+AGG | - | chr8.4:19516127-19516146 | None:intergenic | 45.0% | |
GCTTTGCAATTCTGCCATTC+CGG | + | chr8.4:19516228-19516247 | MS.gene43216:CDS | 45.0% | |
GGAATGGTTGTATCCTGCTA+TGG | - | chr8.4:19518295-19518314 | None:intergenic | 45.0% | |
GGATCGATAAACATATCCCC+CGG | - | chr8.4:19518352-19518371 | None:intergenic | 45.0% | |
GGGTAGCTACTCAATTCCTA+AGG | + | chr8.4:19517633-19517652 | MS.gene43216:CDS | 45.0% | |
GGTGACTCTGTAGTAGTGAA+TGG | - | chr8.4:19518231-19518250 | None:intergenic | 45.0% | |
GTAAACAGCTCGCCTGAATA+AGG | - | chr8.4:19516178-19516197 | None:intergenic | 45.0% | |
GTGGATCTCATCACAAAAGG+TGG | + | chr8.4:19518171-19518190 | MS.gene43216:CDS | 45.0% | |
TATGGCTGGCGTGTATATGA+GGG | + | chr8.4:19518198-19518217 | MS.gene43216:CDS | 45.0% | |
TCCTTGACCTTGTAAGGAAG+GGG | - | chr8.4:19516347-19516366 | None:intergenic | 45.0% | |
TTACATGTCCACTACAGGGA+CGG | + | chr8.4:19518619-19518638 | MS.gene43216:intron | 45.0% | |
TTCACTACTACAGAGTCACC+TGG | + | chr8.4:19518231-19518250 | MS.gene43216:CDS | 45.0% | |
TTCTCAAGGCATAAGCCATG+GGG | - | chr8.4:19516526-19516545 | None:intergenic | 45.0% | |
! | CCATTTTCCCCTTCCTTACA+AGG | + | chr8.4:19516337-19516356 | MS.gene43216:CDS | 45.0% |
! | TACTTCATGATGGGAGATGG+AGG | + | chr8.4:19517178-19517197 | MS.gene43216:CDS | 45.0% |
! | TAGAGGTGTGACCCTTATTC+AGG | + | chr8.4:19516163-19516182 | MS.gene43216:intron | 45.0% |
!! | CTCAAATGGGTTGCATGAGA+AGG | - | chr8.4:19519277-19519296 | None:intergenic | 45.0% |
!! | CTGAAGGAGTACTACGCAAA+AGG | - | chr8.4:19515832-19515851 | None:intergenic | 45.0% |
!! | TCAATCAGTATGCTTTGGGG+GGG | + | chr8.4:19516462-19516481 | MS.gene43216:CDS | 45.0% |
!!! | TAAAATAAATATATGTTTTA+GGG | - | chr8.4:19515389-19515408 | None:intergenic | 5.0% |
!!! | TTAAAATAAATATATGTTTT+AGG | - | chr8.4:19515390-19515409 | None:intergenic | 5.0% |
AACCCACGTTGAGACACTGA+AGG | - | chr8.4:19515848-19515867 | None:intergenic | 50.0% | |
AATCCAATTCCCCCCATAGC+AGG | + | chr8.4:19518279-19518298 | MS.gene43216:CDS | 50.0% | |
ACGTCCTTAACTAGCGTTGC+AGG | - | chr8.4:19517849-19517868 | None:intergenic | 50.0% | |
ACTACTACAGAGTCACCTGG+AGG | + | chr8.4:19518234-19518253 | MS.gene43216:CDS | 50.0% | |
ACTCCTTCAGTGTCTCAACG+TGG | + | chr8.4:19515842-19515861 | MS.gene43216:intron | 50.0% | |
CAAAGCACGGGAACTGATCT+CGG | - | chr8.4:19516214-19516233 | None:intergenic | 50.0% | |
CAAGTGTAACTGCAGCGACT+TGG | - | chr8.4:19519208-19519227 | None:intergenic | 50.0% | |
CACGGTGGTCAGATACTCTT+TGG | + | chr8.4:19517136-19517155 | MS.gene43216:CDS | 50.0% | |
CCGCGTAAAGATCAGCATAC+AGG | - | chr8.4:19518973-19518992 | None:intergenic | 50.0% | |
CCTCCTTGACCTTGTAAGGA+AGG | - | chr8.4:19516349-19516368 | None:intergenic | 50.0% | |
CCTTCCTTACAAGGTCAAGG+AGG | + | chr8.4:19516346-19516365 | MS.gene43216:CDS | 50.0% | |
CGCGTTCTTCTCGAGTCAAA+TGG | + | chr8.4:19516600-19516619 | MS.gene43216:CDS | 50.0% | |
CTATGGCTGGCGTGTATATG+AGG | + | chr8.4:19518197-19518216 | MS.gene43216:CDS | 50.0% | |
CTCCTTCAGTGTCTCAACGT+GGG | + | chr8.4:19515843-19515862 | MS.gene43216:intron | 50.0% | |
CTGCAGTTACACTTGCTCAC+AGG | + | chr8.4:19519213-19519232 | MS.gene43216:CDS | 50.0% | |
GAATCGTGTGCACAGCTGAA+AGG | - | chr8.4:19519058-19519077 | None:intergenic | 50.0% | |
GAGACTATTATCCCTCCCCA+TGG | + | chr8.4:19516508-19516527 | MS.gene43216:CDS | 50.0% | |
GAGCCTGAAATATGGGCCTT+AGG | + | chr8.4:19517685-19517704 | MS.gene43216:CDS | 50.0% | |
GCATGAGAAGGAGAAGGAGA+AGG | - | chr8.4:19519265-19519284 | None:intergenic | 50.0% | |
GGATCAGCATCAATTACCGG+GGG | + | chr8.4:19518333-19518352 | MS.gene43216:CDS | 50.0% | |
GTAGAAATGCGTACCGAGGA+TGG | - | chr8.4:19516961-19516980 | None:intergenic | 50.0% | |
TATCCTGCTATGGGGGGAAT+TGG | - | chr8.4:19518285-19518304 | None:intergenic | 50.0% | |
TCAGTGTCTCAACGTGGGTT+GGG | + | chr8.4:19515848-19515867 | MS.gene43216:intron | 50.0% | |
TCCACCTCCTTGACCTTGTA+AGG | - | chr8.4:19516353-19516372 | None:intergenic | 50.0% | |
TCCCCTTCCTTACAAGGTCA+AGG | + | chr8.4:19516343-19516362 | MS.gene43216:CDS | 50.0% | |
TCCTTACAAGGTCAAGGAGG+TGG | + | chr8.4:19516349-19516368 | MS.gene43216:CDS | 50.0% | |
TGAGAAGGAGAAGGAGAAGG+AGG | - | chr8.4:19519262-19519281 | None:intergenic | 50.0% | |
TGGGTTGCATGAGAAGGAGA+AGG | - | chr8.4:19519271-19519290 | None:intergenic | 50.0% | |
TGGTGTAGAAATGCGTACCG+AGG | - | chr8.4:19516965-19516984 | None:intergenic | 50.0% | |
TGGTTGTATCCTGCTATGGG+GGG | - | chr8.4:19518291-19518310 | None:intergenic | 50.0% | |
TGTCCTCCTGATCCTTCTTC+AGG | - | chr8.4:19516649-19516668 | None:intergenic | 50.0% | |
TTCAGTGTCTCAACGTGGGT+TGG | + | chr8.4:19515847-19515866 | MS.gene43216:intron | 50.0% | |
! | AGCGACTTGGACGAACAACT+CGG | - | chr8.4:19519195-19519214 | None:intergenic | 50.0% |
! | GGTGCTGAATCACACGGTAT+AGG | - | chr8.4:19519082-19519101 | None:intergenic | 50.0% |
! | TTCATGATGGGAGATGGAGG+AGG | + | chr8.4:19517181-19517200 | MS.gene43216:CDS | 50.0% |
! | TTTGACTCGAGAAGAACGCG+CGG | - | chr8.4:19516600-19516619 | None:intergenic | 50.0% |
!! | CTACTGGGTGCTGAATCACA+CGG | - | chr8.4:19519088-19519107 | None:intergenic | 50.0% |
AAATGCGTACCGAGGATGGC+TGG | - | chr8.4:19516957-19516976 | None:intergenic | 55.0% | |
AAGAGCTGGAAGGGAGCTAC+TGG | - | chr8.4:19519104-19519123 | None:intergenic | 55.0% | |
AATGCGTACCGAGGATGGCT+GGG | - | chr8.4:19516956-19516975 | None:intergenic | 55.0% | |
AGAGCTGGAAGGGAGCTACT+GGG | - | chr8.4:19519103-19519122 | None:intergenic | 55.0% | |
AGTAGCTCCCTTCCAGCTCT+TGG | + | chr8.4:19519103-19519122 | MS.gene43216:CDS | 55.0% | |
ATCTTTACGCGGGTGCGCTT+TGG | + | chr8.4:19518981-19519000 | MS.gene43216:CDS | 55.0% | |
CAAGGCATAAGCCATGGGGA+GGG | - | chr8.4:19516522-19516541 | None:intergenic | 55.0% | |
TCAAGGCATAAGCCATGGGG+AGG | - | chr8.4:19516523-19516542 | None:intergenic | 55.0% | |
TCTTCACACCGTCCCTGTAG+TGG | - | chr8.4:19518630-19518649 | None:intergenic | 55.0% | |
TCTTTACGCGGGTGCGCTTT+GGG | + | chr8.4:19518982-19519001 | MS.gene43216:CDS | 55.0% | |
! | ATGGGAGATGGAGGAGGTAC+AGG | + | chr8.4:19517187-19517206 | MS.gene43216:CDS | 55.0% |
AACGCGCGGTTTGAGCCATC+AGG | - | chr8.4:19516586-19516605 | None:intergenic | 60.0% | |
CACGGGAACTGATCTCGGTG+TGG | - | chr8.4:19516209-19516228 | None:intergenic | 60.0% | |
TACCGAGGATGGCTGGGACC+CGG | - | chr8.4:19516950-19516969 | None:intergenic | 65.0% | |
CACCGGGTCCCAGCCATCCT+CGG | + | chr8.4:19516945-19516964 | MS.gene43216:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 19515317 | 19519363 | 19515317 | ID=MS.gene43216 |
chr8.4 | mRNA | 19515317 | 19519363 | 19515317 | ID=MS.gene43216.t1;Parent=MS.gene43216 |
chr8.4 | exon | 19515317 | 19515370 | 19515317 | ID=MS.gene43216.t1.exon1;Parent=MS.gene43216.t1 |
chr8.4 | CDS | 19515317 | 19515370 | 19515317 | ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1 |
chr8.4 | exon | 19516166 | 19516966 | 19516166 | ID=MS.gene43216.t1.exon2;Parent=MS.gene43216.t1 |
chr8.4 | CDS | 19516166 | 19516966 | 19516166 | ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1 |
chr8.4 | exon | 19517070 | 19517286 | 19517070 | ID=MS.gene43216.t1.exon3;Parent=MS.gene43216.t1 |
chr8.4 | CDS | 19517070 | 19517286 | 19517070 | ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1 |
chr8.4 | exon | 19517602 | 19517780 | 19517602 | ID=MS.gene43216.t1.exon4;Parent=MS.gene43216.t1 |
chr8.4 | CDS | 19517602 | 19517780 | 19517602 | ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1 |
chr8.4 | exon | 19518156 | 19518397 | 19518156 | ID=MS.gene43216.t1.exon5;Parent=MS.gene43216.t1 |
chr8.4 | CDS | 19518156 | 19518397 | 19518156 | ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1 |
chr8.4 | exon | 19518967 | 19519363 | 19518967 | ID=MS.gene43216.t1.exon6;Parent=MS.gene43216.t1 |
chr8.4 | CDS | 19518967 | 19519363 | 19518967 | ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1 |
Gene Sequence |
Protein sequence |