AlfalfaGEDB | MS.gene43216

M. sativa cultivar XinJiangDaYe / MS.gene43216

KEGG: -
GO: GO:0003674 GO:0003824
PFAM: PF07995.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43216.t1	XP_013457859.1	98.6	629	9	0	1	629	69	697	0.00E+00	1265.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43216.t1	Q9SSG3	66.7	634	195	5	1	626	66	691	2.0e-256	886.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43216.t1	A0A072V1D2	98.6	629	9	0	1	629	69	697	0.0e+00	1265.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050133	MS.gene43216	0.81192	5.50E-51	-1.69E-46
MS.gene050553	MS.gene43216	-0.854035	1.61E-61	-1.69E-46
MS.gene051525	MS.gene43216	-0.801781	7.66E-49	-1.69E-46
MS.gene051552	MS.gene43216	0.825315	5.01E-54	-1.69E-46
MS.gene052469	MS.gene43216	-0.81407	1.86E-51	-1.69E-46
MS.gene053169	MS.gene43216	-0.806068	9.84E-50	-1.69E-46
MS.gene05494	MS.gene43216	-0.814577	1.44E-51	-1.69E-46
MS.gene055158	MS.gene43216	0.814115	1.82E-51	-1.69E-46
MS.gene055159	MS.gene43216	0.861752	8.23E-64	-1.69E-46
MS.gene055741	MS.gene43216	-0.837723	4.39E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43216.t1	MTR_4g107400	98.569	629	9	0	1	629	69	697	0.0	1283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene43216.t1	AT1G74790	67.147	624	189	5	1	616	66	681	863
MS.gene43216.t1	AT5G62630	62.019	624	206	8	1	607	68	677	785
MS.gene43216.t1	AT5G39970	58.541	603	227	8	8	603	60	646	741
MS.gene43216.t1	AT5G39970	58.541	603	227	8	8	603	73	659	740
MS.gene43216.t1	AT5G39970	58.954	497	186	6	8	500	73	555	630

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Find 183 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCAAGGATCAGTCA+TGG	0.603030	8.4:-19518370	None:intergenic
AAAGCATACTGATTGATTAT+TGG	0.243520	8.4:-19516455	None:intergenic
AAATGCGTACCGAGGATGGC+TGG	0.424046	8.4:-19516954	None:intergenic
AACGCGCGGTTTGAGCCATC+AGG	0.489900	8.4:-19516583	None:intergenic
AAGAGCTGGAAGGGAGCTAC+TGG	0.401179	8.4:-19519101	None:intergenic
AAGATCTGGAGCCTGAAATA+TGG	0.289679	8.4:+19517677	MS.gene43216:CDS
AAGGATCAGCATCAATTACC+GGG	0.560639	8.4:+19518331	MS.gene43216:CDS
AAGTATAAATACCCATCATT+AGG	0.427362	8.4:-19517160	None:intergenic
AAGTATTGATTTCAAAAGTG+AGG	0.602252	8.4:-19515342	None:intergenic
AAGTTAGTAAACTTGGACTT+TGG	0.298827	8.4:+19517611	MS.gene43216:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCTCCACAAAAAAAGT+AGG	-	chr8.4:19517755-19517774	None:intergenic	30.0%
AACTGAAAAAAAGTGGTTAC+TGG	-	chr8.4:19516094-19516113	None:intergenic	30.0%
AAGTTAGTAAACTTGGACTT+TGG	+	chr8.4:19517611-19517630	MS.gene43216:CDS	30.0%
AATTGTGATCCATCAAAGAT+AGG	+	chr8.4:19516859-19516878	MS.gene43216:CDS	30.0%
AGATCTTTATCTTCACTGAA+TGG	-	chr8.4:19517664-19517683	None:intergenic	30.0%
AGTTAGTAAACTTGGACTTT+GGG	+	chr8.4:19517612-19517631	MS.gene43216:CDS	30.0%
ATAATTGGTCAAACAAATGC+TGG	+	chr8.4:19517460-19517479	MS.gene43216:intron	30.0%
ATTCAGTGAAGATAAAGATC+TGG	+	chr8.4:19517663-19517682	MS.gene43216:CDS	30.0%
ATTGCAGAATATACTGCTAA+TGG	+	chr8.4:19516922-19516941	MS.gene43216:CDS	30.0%
CAATCTAAGTCACGATATAA+AGG	-	chr8.4:19516020-19516039	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	19515317	19519363	19515317	ID=MS.gene43216
chr8.4	mRNA	19515317	19519363	19515317	ID=MS.gene43216.t1;Parent=MS.gene43216
chr8.4	exon	19515317	19515370	19515317	ID=MS.gene43216.t1.exon1;Parent=MS.gene43216.t1
chr8.4	CDS	19515317	19515370	19515317	ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1
chr8.4	exon	19516166	19516966	19516166	ID=MS.gene43216.t1.exon2;Parent=MS.gene43216.t1
chr8.4	CDS	19516166	19516966	19516166	ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1
chr8.4	exon	19517070	19517286	19517070	ID=MS.gene43216.t1.exon3;Parent=MS.gene43216.t1
chr8.4	CDS	19517070	19517286	19517070	ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1
chr8.4	exon	19517602	19517780	19517602	ID=MS.gene43216.t1.exon4;Parent=MS.gene43216.t1
chr8.4	CDS	19517602	19517780	19517602	ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1
chr8.4	exon	19518156	19518397	19518156	ID=MS.gene43216.t1.exon5;Parent=MS.gene43216.t1
chr8.4	CDS	19518156	19518397	19518156	ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1
chr8.4	exon	19518967	19519363	19518967	ID=MS.gene43216.t1.exon6;Parent=MS.gene43216.t1
chr8.4	CDS	19518967	19519363	19518967	ID=cds.MS.gene43216.t1;Parent=MS.gene43216.t1

Gene Sequence

>MS.gene43216

ATGAATGTATCTGATACTGCCTGTGCCTCACTTTTGAAATCAATACTTTGTGCGGTAGGTCTTTTTTATCCCTAAAACATATATTTATTTTAATGAGAACCTAAAGAAAAAGTATATATTCAAGGTTTTTTATATCAAAAAATAGTCATGTATTGCTTGAGACAGCATCATATTCTTTTATAGGAAAGTGTTTGTGGTTAATTTAGTTTGTGCTTTGTCTATTCTTATTTATAAGACCCTTTTAAAAGATTTGTTTATCCCTTAATATAAGACTGTACAAATTTCTAGATACTATTACTCTTTCTCCAAATACATCCCTTATTAATAACTATCAATTGGTCTTGAAATATGAAAAGTCAACTGAACACACTTATACACAAAAGGTAATTTAGTAATAGTCATAAACAAATTATACACATCAATTAGACTATCAACTTTTCTTAATATGCATAAAAAGTTCCAAAGGGTCTTATAAATAGGGACGAAGTGAGTAGCAAAGATTGGGCCCTAGACCTTTTGCGTAGTACTCCTTCAGTGTCTCAACGTGGGTTGGGACGAGATCTTGATATATTGAAACCTATACTAGTAACCGATGTTTTAAATCGCAGTTGTGATCACAGTCTTGATCCTAAACATTCCGAAGAATCACAGTCTTATGCGATTGATGCAGCCTCATTTACGGTTACAGAGACATCAAAAACCTTTATATCGTGACTTAGATTGTTGTTGCAGAGCTTTTTTTTCTTTTTTCTTTTTTTTTCTTTCAAAAACCTGCCAGTAACCACTTTTTTTCAGTTCAACAATTTACCTATGCCTTGTATGTAGCTAGCTAACTTTGTTTGTTTGTAGAGGTGTGACCCTTATTCAGGCGAGCTGTTTACGGTTCAATCCACACCGAGATCAGTTCCCGTGCTTTGCAATTCTGCCATTCCGGCAAATTCTTCTCAATCAAAGGCATCGGTGCATGACTTCTGCTCTGAAGTATGGGATACATGTCAAACTGTGTCAATAGTAAACTCACCATTTTCCCCTTCCTTACAAGGTCAAGGAGGTGGATTACCAGCTAATACCAATGCAACCAAACTGAATGAACTGTGGCAATCGAAAAACGATTTTTGTAAAGCATTTGGTGGAGCTTCCAATAATCAATCAGTATGCTTTGGGGGGGAACCTGTTGCATTACGTAACAATGAGACTATTATCCCTCCCCATGGCTTATGCCTTGAGAAAATTGGGAATGGATCTTATCTCAATATGGTTGCTCATCCTGATGGCTCAAACCGCGCGTTCTTCTCGAGTCAAATGGGGAAAGTTTGGTTGGCAACTATTCCTGAAGAAGGATCAGGAGGACAATTGGAGCTTGATGAATCAAGTCCCTTTGTTGATCTAACTGATCAAGTTTATTTTGATACTCAATTTGGAATGATGGGAATGTCGTTTCATCCAAATTTTGCAAACAACGGCCGATTCTTCGCTTCGTTTAACTGTAATAAAGATAAATGGTCTGGCTGCAATGGAATATGTTCTTGTAATTCAAATGTTAATTGTGATCCATCAAAGATAGGTACTAGTAATGGCGCTCAACCGTGTCAATATCAAACTGTTATTGCAGAATATACTGCTAATGGCACCGGGTCCCAGCCATCCTCGGTACGCATTTCTACACCATACATATGAAACAATAGTTTCTATAAGGTGTTTAATTCAGTGGATATAATAGAATAGAACTATCTAATCATTATCGGATTTTCAGGCTACAAGTGCTAAACCAACTGAGGTGAGAAGAATATTTACCATGGGACTCCCATTTACATCTCAACACGGTGGTCAGATACTCTTTGGACCTAATGATGGGTATTTATACTTCATGATGGGAGATGGAGGAGGTACAGGTGATCCATACAATTTTTCCCAAAACAAGAAATCACTGCTTGGAAAGGTTATGAGGCTTGATGTAGACAACATTCCAAGTGAGTAGTACAAACACTTCATATATATAGCACAAACAATTCAATCATTCTATTTTCTCAAACTATTACCGGTGTTGACATGTTAGTGTTAGCTTTGTGCTTGGTGTCCCTGTCTTTGTCGATGCTTCATAGCTCTATAGCTTGTGCGCTTCCTTTTATAAAATGTTCTACCAATAATTGGTCAAACAAATGCTGGCCATATAGTTGAATAGAATCTAGTTGTTCTGTTTCTACTAGCATTTAAAGTTCATTGAGTACTGATAATATTTTTTAATTCCTCACTATTGACAATTATATTTATCATGAACCTTTCAGGTGCATCAGAAGTTAGTAAACTTGGACTTTGGGGTAGCTACTCAATTCCTAAGGATAATCCATTCAGTGAAGATAAAGATCTGGAGCCTGAAATATGGGCCTTAGGATTAAGAAATCCTTGGCGATGCAGTTTTGATTCAGAAAAACCTTCCTACTTTTTTTGTGGAGATGTTGGACAGGTTTGTGAATGCTTATCTCAAAATAAATTTCAGAAATGATATTTGTACACTTGAAAAATTCTAAACCTGCAACGCTAGTTAAGGACGTTTGAAATTAGGGTTAATGAAACATGGAGTTTGGTTAATGAGTACGGCAATATTGGATTACTCATTAACCACTTACCGAGTTTCATTAACCATTACTTCGTTCATTATCAACCGAGTTCTCTGTTAAGGAAGTTCAATGGATGTATAACCGTTTAAGAGAACAAAAAGAATGCATGCGTCTTTCTTGAGGCTAAAATAGTTGTCAATTTCCTCAATCATAAACTTTTAATAACTTCTACAAGGAAAAAAGTGAAATGCAATATTCTTAGTTACACAATTGATTTGCAGGATCTTTATGAAGAGGTGGATCTCATCACAAAAGGTGGAAACTATGGCTGGCGTGTATATGAGGGACTCTATCCATTCACTACTACAGAGTCACCTGGAGGAAATACATCCCTTAAATCCATAAATCCAATTCCCCCCATAGCAGGATACAACCATTCCCAAATAAACAAGAATGAAGGATCAGCATCAATTACCGGGGGATATGTTTATCGATCCATGACTGATCCTTGCATGTTTGGAAGGTACTGAAGCCTTTTCTTTTCCTTTTTGGCCTTCATCTGGTTTTTCATATTATGTAAGTTGTTGAGAGTCACAGAAAGAATAAGATGTGGTCTGAAAAAATGTTTATAAGTAGCAGACGCCCTTCACCTTACAAGCTGCATTTGTATGGATGAGTTATACCTAACCAAAATTTTTAAGATGAGTTCAGAGTCTATCTAAATTCTGTCACTCGGGTCATGCTTTACATGTCCACTACAGGGACGGTGTGAAGAAGTGAATGCAACAACAAATTGTAATTTATCCAGCACAATACTTAACTCTTGCACAAGAACAAATAGTACACATGTGTGCAACATTATGAGTTGTTTCTCATTGATTGGTGTCAAGATATTAAATTGCAGTCACAACAACGATTGTAATGTCACAACCCTCAACATTGTAGAGAATCACGACCAAATACTACAGTTGGTGTGTTTTCAGTTGTGGTCATGATTTGGTCACATATCATAGACATCAAATCGCTTGATGCTGTGGATGTTTGCTCATATTTGCCATGGGACTTATTTTAAAACGCTTTGGTGCATTTCAGGTACCTGTATGCTGATCTTTACGCGGGTGCGCTTTGGGCTGCCACCGAAGATCCTTCAAATAGTGGAAATTTCACGACTAGCAAAATCCCTTTCAGCTGTGCACACGATTCTCCTATACCGTGTGATTCAGCACCCAGTAGCTCCCTTCCAGCTCTTGGATACATCTTTTCATTTGGGCAAGACAACAACAAAGATGTTTATATTCTTGCAAGTTCTGGTGTTTACCGAGTTGTTCGTCCAAGTCGCTGCAGTTACACTTGCTCACAGGAAAAGGCATCAACAACTACTACTCCTCCTTCTCCTTCTCCTTCTCATGCAACCCATTTGAGTAGCTTCTATGGATATATGTTTCTGCAGCTTTCATCTTTATTGTTGGTTTTGATGTGTTTTATGTAG

Protein sequence

>MS.gene43216.t1

MNVSDTACASLLKSILCARCDPYSGELFTVQSTPRSVPVLCNSAIPANSSQSKASVHDFCSEVWDTCQTVSIVNSPFSPSLQGQGGGLPANTNATKLNELWQSKNDFCKAFGGASNNQSVCFGGEPVALRNNETIIPPHGLCLEKIGNGSYLNMVAHPDGSNRAFFSSQMGKVWLATIPEEGSGGQLELDESSPFVDLTDQVYFDTQFGMMGMSFHPNFANNGRFFASFNCNKDKWSGCNGICSCNSNVNCDPSKIGTSNGAQPCQYQTVIAEYTANGTGSQPSSATSAKPTEVRRIFTMGLPFTSQHGGQILFGPNDGYLYFMMGDGGGTGDPYNFSQNKKSLLGKVMRLDVDNIPSASEVSKLGLWGSYSIPKDNPFSEDKDLEPEIWALGLRNPWRCSFDSEKPSYFFCGDVGQDLYEEVDLITKGGNYGWRVYEGLYPFTTTESPGGNTSLKSINPIPPIAGYNHSQINKNEGSASITGGYVYRSMTDPCMFGRYLYADLYAGALWAATEDPSNSGNFTTSKIPFSCAHDSPIPCDSAPSSSLPALGYIFSFGQDNNKDVYILASSGVYRVVRPSRCSYTCSQEKASTTTTPPSPSPSHATHLSSFYGYMFLQLSSLLLVLMCFM