Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43391.t1 | XP_024626054.1 | 96 | 480 | 14 | 1 | 1 | 480 | 1 | 475 | 3.30E-215 | 757.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43391.t1 | Q8W4K5 | 64.3 | 493 | 145 | 13 | 3 | 477 | 10 | 489 | 1.1e-123 | 444.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43391.t1 | A0A396H4D3 | 96.0 | 480 | 14 | 1 | 1 | 480 | 1 | 475 | 2.4e-215 | 757.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051816 | MS.gene43391 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene054593 | MS.gene43391 | 0.800338 | 1.51E-48 | -1.69E-46 |
| MS.gene054885 | MS.gene43391 | 0.91859 | 1.29E-86 | -1.69E-46 |
| MS.gene05640 | MS.gene43391 | 0.834028 | 3.80E-56 | -1.69E-46 |
| MS.gene057458 | MS.gene43391 | 0.805768 | 1.14E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene43391 | 0.803111 | 4.07E-49 | -1.69E-46 |
| MS.gene060565 | MS.gene43391 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene43391 | 0.841261 | 5.29E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43391.t1 | MTR_7g095500 | 96.760 | 463 | 10 | 1 | 1 | 463 | 1 | 458 | 0.0 | 915 |
| MS.gene43391.t1 | MTR_1g071450 | 75.720 | 486 | 105 | 9 | 1 | 477 | 1 | 482 | 0.0 | 603 |
| MS.gene43391.t1 | MTR_1g041395 | 62.687 | 469 | 154 | 8 | 18 | 477 | 11 | 467 | 1.41e-145 | 425 |
| MS.gene43391.t1 | MTR_1g041395 | 62.687 | 469 | 153 | 8 | 18 | 477 | 11 | 466 | 3.95e-145 | 424 |
| MS.gene43391.t1 | MTR_1g041395 | 62.156 | 473 | 156 | 8 | 18 | 477 | 11 | 473 | 5.43e-145 | 424 |
| MS.gene43391.t1 | MTR_1g102980 | 58.263 | 472 | 167 | 9 | 8 | 477 | 10 | 453 | 2.01e-129 | 383 |
| MS.gene43391.t1 | MTR_1g041395 | 70.569 | 299 | 87 | 1 | 179 | 477 | 39 | 336 | 9.36e-106 | 318 |
| MS.gene43391.t1 | MTR_1g102980 | 62.349 | 332 | 113 | 3 | 147 | 477 | 8 | 328 | 3.15e-95 | 291 |
| MS.gene43391.t1 | MTR_3g110182 | 36.998 | 473 | 214 | 10 | 1 | 469 | 14 | 406 | 1.85e-66 | 219 |
| MS.gene43391.t1 | MTR_4g039910 | 47.390 | 249 | 104 | 4 | 179 | 426 | 100 | 322 | 5.36e-49 | 171 |
| MS.gene43391.t1 | MTR_5g012870 | 36.545 | 301 | 150 | 6 | 180 | 471 | 113 | 381 | 3.41e-44 | 160 |
| MS.gene43391.t1 | MTR_3g110182 | 35.980 | 403 | 175 | 9 | 9 | 407 | 20 | 343 | 4.83e-43 | 156 |
| MS.gene43391.t1 | MTR_7g095630 | 43.316 | 187 | 45 | 3 | 74 | 260 | 74 | 199 | 1.72e-28 | 112 |
| MS.gene43391.t1 | MTR_4g129510 | 33.446 | 296 | 153 | 9 | 180 | 472 | 118 | 372 | 4.66e-14 | 73.9 |
| MS.gene43391.t1 | MTR_4g019730 | 61.702 | 47 | 18 | 0 | 395 | 441 | 1 | 47 | 9.22e-14 | 68.2 |
| MS.gene43391.t1 | MTR_4g129510 | 33.446 | 296 | 153 | 9 | 180 | 472 | 87 | 341 | 3.23e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43391.t1 | AT3G63300 | 63.489 | 493 | 149 | 12 | 3 | 477 | 10 | 489 | 3.68e-165 | 476 |
| MS.gene43391.t1 | AT3G22810 | 59.002 | 461 | 179 | 5 | 20 | 478 | 18 | 470 | 4.85e-163 | 469 |
| MS.gene43391.t1 | AT4G14740 | 59.524 | 462 | 174 | 5 | 20 | 475 | 18 | 472 | 7.30e-161 | 464 |
| MS.gene43391.t1 | AT4G14740 | 59.524 | 462 | 174 | 5 | 20 | 475 | 18 | 472 | 7.30e-161 | 464 |
| MS.gene43391.t1 | AT5G43870 | 56.867 | 466 | 158 | 9 | 20 | 477 | 22 | 452 | 4.61e-141 | 413 |
| MS.gene43391.t1 | AT4G14740 | 58.942 | 397 | 150 | 5 | 20 | 410 | 18 | 407 | 2.45e-126 | 374 |
| MS.gene43391.t1 | AT3G22810 | 59.439 | 392 | 149 | 6 | 20 | 409 | 18 | 401 | 4.08e-125 | 370 |
| MS.gene43391.t1 | AT3G22810 | 62.236 | 331 | 124 | 1 | 148 | 478 | 3 | 332 | 4.37e-125 | 368 |
| MS.gene43391.t1 | AT4G14740 | 63.253 | 332 | 117 | 2 | 148 | 475 | 3 | 333 | 4.00e-122 | 360 |
| MS.gene43391.t1 | AT3G63300 | 62.611 | 337 | 114 | 5 | 147 | 477 | 1 | 331 | 2.20e-106 | 320 |
| MS.gene43391.t1 | AT5G43870 | 56.642 | 399 | 130 | 9 | 20 | 410 | 22 | 385 | 4.53e-106 | 321 |
| MS.gene43391.t1 | AT4G17350 | 37.417 | 302 | 149 | 7 | 180 | 471 | 115 | 386 | 1.40e-40 | 150 |
| MS.gene43391.t1 | AT4G16670 | 35.099 | 302 | 166 | 6 | 180 | 472 | 132 | 412 | 1.17e-39 | 148 |
| MS.gene43391.t1 | AT5G47440 | 34.043 | 282 | 158 | 4 | 191 | 472 | 134 | 387 | 9.89e-37 | 140 |
| MS.gene43391.t1 | AT4G32780 | 41.017 | 295 | 140 | 6 | 179 | 469 | 131 | 395 | 5.11e-36 | 138 |
| MS.gene43391.t1 | AT4G32780 | 41.017 | 295 | 140 | 6 | 179 | 469 | 150 | 414 | 5.55e-36 | 138 |
| MS.gene43391.t1 | AT4G16670 | 36.820 | 239 | 122 | 5 | 180 | 409 | 132 | 350 | 2.09e-28 | 115 |
| MS.gene43391.t1 | AT4G16670 | 32.836 | 268 | 122 | 6 | 180 | 409 | 132 | 379 | 8.66e-23 | 100 |
| MS.gene43391.t1 | AT5G57770 | 32.414 | 290 | 163 | 7 | 180 | 467 | 128 | 386 | 8.78e-21 | 94.7 |
| MS.gene43391.t1 | AT5G57770 | 36.161 | 224 | 117 | 3 | 180 | 403 | 128 | 325 | 4.49e-20 | 91.7 |
Find 108 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGGTGGCGGTTCTTTAAC+TGG | 0.219424 | 7.2:-14369177 | MS.gene43391:CDS |
| TCTGGACTCAAGGGGTTTCT+AGG | 0.252811 | 7.2:-14367332 | MS.gene43391:CDS |
| CTCTTCCACCATTGAATAAT+GGG | 0.255578 | 7.2:+14368980 | None:intergenic |
| GCTCTTCCACCATTGAATAA+TGG | 0.258525 | 7.2:+14368979 | None:intergenic |
| TGCCCTTAGCAAGTAGTTCT+TGG | 0.278237 | 7.2:+14367894 | None:intergenic |
| AATTCATCTGAATGAGAAAT+TGG | 0.282397 | 7.2:+14369144 | None:intergenic |
| CTGCCACTCGGAACCGATTC+AGG | 0.307254 | 7.2:+14369622 | None:intergenic |
| CTAGAGCTGTGAAGGACTTA+TGG | 0.308647 | 7.2:-14368060 | MS.gene43391:CDS |
| ATCAAAGAGAATATGATATC+TGG | 0.312576 | 7.2:-14367350 | MS.gene43391:CDS |
| GGCAATGGCACAGCTTGTTC+AGG | 0.333330 | 7.2:-14368943 | MS.gene43391:CDS |
| GAGTGGTTAGTGGTTTCTTC+AGG | 0.337132 | 7.2:+14369454 | None:intergenic |
| ATGGGAGGTATACCAATATC+TGG | 0.367567 | 7.2:-14368004 | MS.gene43391:CDS |
| GATAATCTACCTGACGTTAA+TGG | 0.380752 | 7.2:+14369219 | None:intergenic |
| TAATGATAATGTACCGTTAC+GGG | 0.396975 | 7.2:+14367853 | None:intergenic |
| ATGAAGAGCAAACATGTTGC+AGG | 0.415682 | 7.2:-14367605 | MS.gene43391:CDS |
| CGTTCAAAGGTTCGCTGCTG+TGG | 0.418235 | 7.2:+14369196 | None:intergenic |
| CACAATTTCTCCACTATCAC+TGG | 0.431487 | 7.2:+14367946 | None:intergenic |
| TCCATTCACCCATTATTCAA+TGG | 0.432610 | 7.2:-14368988 | MS.gene43391:CDS |
| GACAGACGTGGCTGTTGCTT+CGG | 0.436071 | 7.2:-14368740 | MS.gene43391:CDS |
| AACAACAGCTCCAGTGATAG+TGG | 0.442876 | 7.2:-14367956 | MS.gene43391:CDS |
| CAATTGTCTGCGTCCTGAAT+CGG | 0.446737 | 7.2:-14369635 | MS.gene43391:CDS |
| AGCAAGTAGTTCTTGGCTGC+AGG | 0.448375 | 7.2:+14367901 | None:intergenic |
| TCATCTGATAGATCTCTTCC+TGG | 0.453162 | 7.2:+14367441 | None:intergenic |
| TCTGTTTACATACATCGAAC+AGG | 0.458457 | 7.2:-14367724 | MS.gene43391:CDS |
| TCTTCATGCATGCCTTCAAA+TGG | 0.464517 | 7.2:-14369484 | MS.gene43391:CDS |
| TTCAGATAAAGAGTGGTTAG+TGG | 0.466917 | 7.2:+14369444 | None:intergenic |
| TCAGGACGCAGACAATTGAT+TGG | 0.473398 | 7.2:+14369640 | None:intergenic |
| GCGCGACCACCTTGCATTGG+TGG | 0.473614 | 7.2:-14368662 | MS.gene43391:CDS |
| GGCAGAGGGGTGCTGCCACT+CGG | 0.474082 | 7.2:+14369610 | None:intergenic |
| ACCATTGAATAATGGGTGAA+TGG | 0.477885 | 7.2:+14368987 | None:intergenic |
| CCTCCCATTCCTTTCTCCAA+TGG | 0.478119 | 7.2:+14368019 | None:intergenic |
| GGAGAGTCCTCGAGTTCCTA+TGG | 0.478365 | 7.2:-14369587 | MS.gene43391:CDS |
| AGCAACAGCCACGTCTGTCT+TGG | 0.481577 | 7.2:+14368744 | None:intergenic |
| GGTATACCAATATCTGGAAA+AGG | 0.489627 | 7.2:-14367998 | MS.gene43391:CDS |
| ATAATGATAATGTACCGTTA+CGG | 0.489717 | 7.2:+14367852 | None:intergenic |
| GAGTGGCAGCACCCCTCTGC+CGG | 0.491471 | 7.2:-14369608 | MS.gene43391:CDS |
| CAGCCAAGAACTACTTGCTA+AGG | 0.492651 | 7.2:-14367897 | MS.gene43391:CDS |
| CTTTCAGTGTTGCTGCTCCT+CGG | 0.496117 | 7.2:+14368083 | None:intergenic |
| ACTCGAGGACTCTCCGGCAG+AGG | 0.496378 | 7.2:+14369595 | None:intergenic |
| CTCGAGGACTCTCCGGCAGA+GGG | 0.502516 | 7.2:+14369596 | None:intergenic |
| ATAGGAACTCGAGGACTCTC+CGG | 0.511006 | 7.2:+14369589 | None:intergenic |
| TCAGGAATAGAACCATTTGA+AGG | 0.517205 | 7.2:+14369472 | None:intergenic |
| TGGAATTTCTGTCAAGGTCA+TGG | 0.519995 | 7.2:-14369567 | MS.gene43391:CDS |
| CTTACTGCTGCAGCTGCCAC+AGG | 0.532447 | 7.2:-14368595 | MS.gene43391:intron |
| TGAGCGCGACCACCTTGCAT+TGG | 0.533086 | 7.2:-14368665 | MS.gene43391:CDS |
| ACAAAACAAGGATGAGAAGA+TGG | 0.533868 | 7.2:-14368767 | MS.gene43391:CDS |
| AGCGAACCTTTGAACGGTGG+CGG | 0.538212 | 7.2:-14369189 | MS.gene43391:CDS |
| GAATATGATATCTGGACTCA+AGG | 0.538804 | 7.2:-14367342 | MS.gene43391:CDS |
| ACACCATTGGAGAAAGGAAT+GGG | 0.539484 | 7.2:-14368022 | MS.gene43391:CDS |
| TTACTCAAACGCACCCGTAA+CGG | 0.540696 | 7.2:-14367866 | MS.gene43391:intron |
| AGATCTCTTCCTGGCCATGC+TGG | 0.541598 | 7.2:+14367450 | None:intergenic |
| ATTTGCTGTTGCCGCCGCGA+TGG | 0.542104 | 7.2:+14368798 | None:intergenic |
| AATATGATATCTGGACTCAA+GGG | 0.546826 | 7.2:-14367341 | MS.gene43391:CDS |
| GGAAGAGATCTATCAGATGA+TGG | 0.550853 | 7.2:-14367438 | MS.gene43391:CDS |
| GCAGTAACACCATTGGAGAA+AGG | 0.553514 | 7.2:-14368028 | MS.gene43391:CDS |
| AACACCATTGGAGAAAGGAA+TGG | 0.555483 | 7.2:-14368023 | MS.gene43391:CDS |
| GACTAGCTGCGAAGTAGCAG+AGG | 0.556482 | 7.2:+14369381 | None:intergenic |
| AAAGAACCGCCACCGTTCAA+AGG | 0.558652 | 7.2:+14369183 | None:intergenic |
| TGAATTTGACGATGTTGTCA+AGG | 0.561851 | 7.2:-14369127 | MS.gene43391:intron |
| GTTCAAAGGTTCGCTGCTGT+GGG | 0.566929 | 7.2:+14369197 | None:intergenic |
| ACGGATTTACCAGCATGGCC+AGG | 0.567017 | 7.2:-14367459 | MS.gene43391:CDS |
| TGTGGAGGCTGCTGAAGCAA+TGG | 0.573897 | 7.2:-14368692 | MS.gene43391:CDS |
| GAAGTGTCGCCATTAACGTC+AGG | 0.575049 | 7.2:-14369228 | MS.gene43391:CDS |
| CGGATTGAAAACAGACTCGA+GGG | 0.581533 | 7.2:-14367397 | MS.gene43391:CDS |
| TATGTCACACTCTGCTAGAG+AGG | 0.585361 | 7.2:-14369347 | MS.gene43391:intron |
| TAACTGCAGGTGATCTACAC+TGG | 0.586350 | 7.2:-14367756 | MS.gene43391:intron |
| ACTGAAAGCTAGAGCTGTGA+AGG | 0.590453 | 7.2:-14368068 | MS.gene43391:CDS |
| TGGTGCTGCAGTAACACCAT+TGG | 0.591757 | 7.2:-14368035 | MS.gene43391:CDS |
| GTGGAGGCTGCTGAAGCAAT+GGG | 0.591770 | 7.2:-14368691 | MS.gene43391:CDS |
| GGAGAAATTGTGAATGCAGA+TGG | 0.594536 | 7.2:-14367935 | MS.gene43391:CDS |
| TGTTCAGGACCTAAAACTGT+AGG | 0.595140 | 7.2:-14368928 | MS.gene43391:CDS |
| TGCTATAGCTGCCATCGCGG+CGG | 0.598800 | 7.2:-14368809 | MS.gene43391:CDS |
| TTCCTATGGAATTTCTGTCA+AGG | 0.602611 | 7.2:-14369573 | MS.gene43391:CDS |
| GCAAATGCTGGTGTTGGCAA+TGG | 0.603762 | 7.2:-14368958 | MS.gene43391:CDS |
| AGTGTGACATAATGCGCTCA+AGG | 0.608345 | 7.2:+14369359 | None:intergenic |
| ATTCACCCATTATTCAATGG+TGG | 0.611363 | 7.2:-14368985 | MS.gene43391:CDS |
| TCTAGTTGCTGCACAATGTG+TGG | 0.616322 | 7.2:-14368710 | MS.gene43391:CDS |
| GGAAGAGCAAATGCTGGTGT+TGG | 0.620253 | 7.2:-14368964 | MS.gene43391:CDS |
| AAATTCATCAACACAAAACA+AGG | 0.621432 | 7.2:-14368779 | MS.gene43391:CDS |
| TATTGTGCTAGACGTGTGCA+CGG | 0.621908 | 7.2:-14367478 | MS.gene43391:CDS |
| AGCCAAGAACTACTTGCTAA+GGG | 0.627681 | 7.2:-14367896 | MS.gene43391:CDS |
| CTGAGCTGACCACCAATGCA+AGG | 0.629155 | 7.2:+14368653 | None:intergenic |
| AGAGATCTTCAGATAAAGAG+TGG | 0.631675 | 7.2:+14369437 | None:intergenic |
| CACAGCAGCGAACCTTTGAA+CGG | 0.635482 | 7.2:-14369195 | MS.gene43391:CDS |
| AGTTGCTGCACAATGTGTGG+AGG | 0.636318 | 7.2:-14368707 | MS.gene43391:CDS |
| GAAGGCATGCATGAAGAATG+AGG | 0.646788 | 7.2:+14369490 | None:intergenic |
| ACATTGTGCAGCAACTAGAG+TGG | 0.648949 | 7.2:+14368714 | None:intergenic |
| ATATGATATCTGGACTCAAG+GGG | 0.656490 | 7.2:-14367340 | MS.gene43391:CDS |
| AGAAATTCCATAGGAACTCG+AGG | 0.657611 | 7.2:+14369580 | None:intergenic |
| AATGGTGGAAGAGCAAATGC+TGG | 0.658370 | 7.2:-14368970 | MS.gene43391:CDS |
| TTCTGCTATAGCTGCCATCG+CGG | 0.658786 | 7.2:-14368812 | MS.gene43391:CDS |
| TCGGATTGAAAACAGACTCG+AGG | 0.660819 | 7.2:-14367398 | MS.gene43391:CDS |
| TGAGGTGGTTGAGAATGAGC+TGG | 0.666197 | 7.2:+14369508 | None:intergenic |
| GACCTAAAACTGTAGGAAGG+TGG | 0.671239 | 7.2:-14368921 | MS.gene43391:CDS |
| GACCTTGACAGAAATTCCAT+AGG | 0.674441 | 7.2:+14369571 | None:intergenic |
| CCTTGATATGTAGCTCTCCG+AGG | 0.677249 | 7.2:-14368100 | MS.gene43391:intron |
| CAGGACCTAAAACTGTAGGA+AGG | 0.679190 | 7.2:-14368924 | MS.gene43391:CDS |
| GAAGATGGCCAAGACAGACG+TGG | 0.685054 | 7.2:-14368752 | MS.gene43391:CDS |
| CGTCCTGAATCGGTTCCGAG+TGG | 0.686606 | 7.2:-14369625 | MS.gene43391:CDS |
| CCATTGGAGAAAGGAATGGG+AGG | 0.688222 | 7.2:-14368019 | MS.gene43391:CDS |
| TCGAGGACTCTCCGGCAGAG+GGG | 0.689304 | 7.2:+14369597 | None:intergenic |
| AGCAGCGAACCTTTGAACGG+TGG | 0.695192 | 7.2:-14369192 | MS.gene43391:CDS |
| TGTGCACGGATTTACCAGCA+TGG | 0.708131 | 7.2:-14367464 | MS.gene43391:CDS |
| GCTGTGAAGGACTTATGGAA+TGG | 0.718299 | 7.2:-14368055 | MS.gene43391:CDS |
| AGCTGACCACCAATGCAAGG+TGG | 0.720745 | 7.2:+14368656 | None:intergenic |
| GCTGCACGCTACAATTACTG+TGG | 0.727804 | 7.2:-14368845 | MS.gene43391:CDS |
| GGATTGAAAACAGACTCGAG+GGG | 0.769794 | 7.2:-14367396 | MS.gene43391:CDS |
| GGCATGCATGAAGAATGAGG+TGG | 0.810503 | 7.2:+14369493 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTATTATATATGTAAC+AGG | - | chr7.2:14367683-14367702 | MS.gene43391:intron | 10.0% |
| !!! | AAAACAATTAAATTCTGTTT+TGG | - | chr7.2:14369151-14369170 | MS.gene43391:CDS | 15.0% |
| !! | GCATCTATTTCATAATATAA+TGG | - | chr7.2:14368386-14368405 | MS.gene43391:intron | 20.0% |
| !! | TATTAAGACTACAAAATTTC+TGG | - | chr7.2:14369123-14369142 | MS.gene43391:intron | 20.0% |
| !! | TTAATAGCATAATCTGTAAT+TGG | + | chr7.2:14369109-14369128 | None:intergenic | 20.0% |
| !! | TTACATAAACTGTGAATATA+AGG | + | chr7.2:14368801-14368820 | None:intergenic | 20.0% |
| !!! | AATAGTCTTAGACATTTTAA+TGG | + | chr7.2:14368591-14368610 | None:intergenic | 20.0% |
| !!! | ACATTTTAATGGTTTATTGT+AGG | + | chr7.2:14368580-14368599 | None:intergenic | 20.0% |
| !!! | AGTTCTATATTTTTACTATG+TGG | - | chr7.2:14367873-14367892 | MS.gene43391:CDS | 20.0% |
| !!! | TGTATTTAACTTAAATTCTC+TGG | + | chr7.2:14368455-14368474 | None:intergenic | 20.0% |
| ! | AAATTCATCAACACAAAACA+AGG | - | chr7.2:14368154-14368173 | MS.gene43391:intron | 25.0% |
| ! | AATTCATCTGAATGAGAAAT+TGG | + | chr7.2:14367792-14367811 | None:intergenic | 25.0% |
| ! | ATCAAAGAGAATATGATATC+TGG | - | chr7.2:14369583-14369602 | MS.gene43391:CDS | 25.0% |
| ! | ATCACAATTCTTGATATTAC+AGG | - | chr7.2:14368486-14368505 | MS.gene43391:intron | 25.0% |
| ! | CAGTTTATGTAATGTGTATA+TGG | - | chr7.2:14368809-14368828 | MS.gene43391:CDS | 25.0% |
| !! | AATTAGCGATTTTGTATGAT+TGG | + | chr7.2:14368679-14368698 | None:intergenic | 25.0% |
| !! | ATAATGATAATGTACCGTTA+CGG | + | chr7.2:14369084-14369103 | None:intergenic | 25.0% |
| !! | TTATTACCTTTTCCAGATAT+TGG | + | chr7.2:14368944-14368963 | None:intergenic | 25.0% |
| AAATAGATGCTCAATGATGT+GGG | + | chr7.2:14368376-14368395 | None:intergenic | 30.0% | |
| AATATGATATCTGGACTCAA+GGG | - | chr7.2:14369592-14369611 | MS.gene43391:CDS | 30.0% | |
| AGACATTTAGATTATGCTCT+TGG | - | chr7.2:14368622-14368641 | MS.gene43391:CDS | 30.0% | |
| GCATAATCTAAATGTCTTAG+TGG | + | chr7.2:14368619-14368638 | None:intergenic | 30.0% | |
| ! | CACTTAACTTTAGTTTCACA+AGG | - | chr7.2:14368719-14368738 | MS.gene43391:CDS | 30.0% |
| ! | TAATGATAATGTACCGTTAC+GGG | + | chr7.2:14369083-14369102 | None:intergenic | 30.0% |
| !!! | ACAATTTTTTTTACCAGCAC+TGG | - | chr7.2:14369393-14369412 | MS.gene43391:CDS | 30.0% |
| !!! | CAATGTATGTGCAGTTTTTT+CGG | - | chr7.2:14367913-14367932 | MS.gene43391:CDS | 30.0% |
| AAAACTGCACATACATTGAC+AGG | + | chr7.2:14367911-14367930 | None:intergenic | 35.0% | |
| ACAAAACAAGGATGAGAAGA+TGG | - | chr7.2:14368166-14368185 | MS.gene43391:intron | 35.0% | |
| AGAGATCTTCAGATAAAGAG+TGG | + | chr7.2:14367499-14367518 | None:intergenic | 35.0% | |
| ATATGATATCTGGACTCAAG+GGG | - | chr7.2:14369593-14369612 | MS.gene43391:CDS | 35.0% | |
| ATTCACCCATTATTCAATGG+TGG | - | chr7.2:14367948-14367967 | MS.gene43391:CDS | 35.0% | |
| CTCTTCCACCATTGAATAAT+GGG | + | chr7.2:14367956-14367975 | None:intergenic | 35.0% | |
| GAAATAGATGCTCAATGATG+TGG | + | chr7.2:14368377-14368396 | None:intergenic | 35.0% | |
| GAATATGATATCTGGACTCA+AGG | - | chr7.2:14369591-14369610 | MS.gene43391:CDS | 35.0% | |
| GATAATCTACCTGACGTTAA+TGG | + | chr7.2:14367717-14367736 | None:intergenic | 35.0% | |
| GGAATCAATGTTTCATATCG+CGG | - | chr7.2:14368407-14368426 | MS.gene43391:intron | 35.0% | |
| GGTATACCAATATCTGGAAA+AGG | - | chr7.2:14368935-14368954 | MS.gene43391:CDS | 35.0% | |
| TCAGGAATAGAACCATTTGA+AGG | + | chr7.2:14367464-14367483 | None:intergenic | 35.0% | |
| TCCATTCACCCATTATTCAA+TGG | - | chr7.2:14367945-14367964 | MS.gene43391:CDS | 35.0% | |
| TCTGTTTACATACATCGAAC+AGG | - | chr7.2:14369209-14369228 | MS.gene43391:CDS | 35.0% | |
| TGAATGTGATTGTGTCTTTG+TGG | + | chr7.2:14367632-14367651 | None:intergenic | 35.0% | |
| TGAATTTGACGATGTTGTCA+AGG | - | chr7.2:14367806-14367825 | MS.gene43391:intron | 35.0% | |
| TTAGATTATGCTCTTGGACA+AGG | - | chr7.2:14368628-14368647 | MS.gene43391:CDS | 35.0% | |
| TTCAGATAAAGAGTGGTTAG+TGG | + | chr7.2:14367492-14367511 | None:intergenic | 35.0% | |
| TTCCTATGGAATTTCTGTCA+AGG | - | chr7.2:14367360-14367379 | MS.gene43391:CDS | 35.0% | |
| !! | ACCATTGAATAATGGGTGAA+TGG | + | chr7.2:14367949-14367968 | None:intergenic | 35.0% |
| !!! | GTGAATGCAGATGGTTTTAT+AGG | - | chr7.2:14369007-14369026 | MS.gene43391:CDS | 35.0% |
| AACACCATTGGAGAAAGGAA+TGG | - | chr7.2:14368910-14368929 | MS.gene43391:CDS | 40.0% | |
| ACAAGGCTTGCAAACATTTC+AGG | - | chr7.2:14369294-14369313 | MS.gene43391:intron | 40.0% | |
| ACACCATTGGAGAAAGGAAT+GGG | - | chr7.2:14368911-14368930 | MS.gene43391:CDS | 40.0% | |
| AGAAATTCCATAGGAACTCG+AGG | + | chr7.2:14367356-14367375 | None:intergenic | 40.0% | |
| ATGAAGAGCAAACATGTTGC+AGG | - | chr7.2:14369328-14369347 | MS.gene43391:intron | 40.0% | |
| CACAATTTCTCCACTATCAC+TGG | + | chr7.2:14368990-14369009 | None:intergenic | 40.0% | |
| GACCTTGACAGAAATTCCAT+AGG | + | chr7.2:14367365-14367384 | None:intergenic | 40.0% | |
| GCTCTTCCACCATTGAATAA+TGG | + | chr7.2:14367957-14367976 | None:intergenic | 40.0% | |
| GGAAGAGATCTATCAGATGA+TGG | - | chr7.2:14369495-14369514 | MS.gene43391:CDS | 40.0% | |
| GGAGAAATTGTGAATGCAGA+TGG | - | chr7.2:14368998-14369017 | MS.gene43391:CDS | 40.0% | |
| TACGTGTTCATTCGTTGACA+AGG | - | chr7.2:14369277-14369296 | MS.gene43391:intron | 40.0% | |
| TATGTTTCGATAGCCTCAAG+AGG | + | chr7.2:14368534-14368553 | None:intergenic | 40.0% | |
| TCATCTGATAGATCTCTTCC+TGG | + | chr7.2:14369495-14369514 | None:intergenic | 40.0% | |
| TCTTCATGCATGCCTTCAAA+TGG | - | chr7.2:14367449-14367468 | MS.gene43391:CDS | 40.0% | |
| TGGAATTTCTGTCAAGGTCA+TGG | - | chr7.2:14367366-14367385 | MS.gene43391:CDS | 40.0% | |
| TGTTCAGGACCTAAAACTGT+AGG | - | chr7.2:14368005-14368024 | MS.gene43391:CDS | 40.0% | |
| ! | AACCACCTTCCTACAGTTTT+AGG | + | chr7.2:14368017-14368036 | None:intergenic | 40.0% |
| ! | AGCCAAGAACTACTTGCTAA+GGG | - | chr7.2:14369037-14369056 | MS.gene43391:intron | 40.0% |
| ! | ATGGGAGGTATACCAATATC+TGG | - | chr7.2:14368929-14368948 | MS.gene43391:CDS | 40.0% |
| !!! | TCTGTTTTGGTGATAACTGC+AGG | - | chr7.2:14369164-14369183 | MS.gene43391:CDS | 40.0% |
| !!! | TTTTACCAGCACTGGTACAT+AGG | - | chr7.2:14369401-14369420 | MS.gene43391:CDS | 40.0% |
| AACAACAGCTCCAGTGATAG+TGG | - | chr7.2:14368977-14368996 | MS.gene43391:CDS | 45.0% | |
| ACATTGTGCAGCAACTAGAG+TGG | + | chr7.2:14368222-14368241 | None:intergenic | 45.0% | |
| ACTGAAAGCTAGAGCTGTGA+AGG | - | chr7.2:14368865-14368884 | MS.gene43391:CDS | 45.0% | |
| AGTGTGACATAATGCGCTCA+AGG | + | chr7.2:14367577-14367596 | None:intergenic | 45.0% | |
| CAATTGTCTGCGTCCTGAAT+CGG | - | chr7.2:14367298-14367317 | MS.gene43391:CDS | 45.0% | |
| CAGGACCTAAAACTGTAGGA+AGG | - | chr7.2:14368009-14368028 | MS.gene43391:CDS | 45.0% | |
| CGGATTGAAAACAGACTCGA+GGG | - | chr7.2:14369536-14369555 | MS.gene43391:CDS | 45.0% | |
| CTAGAGCTGTGAAGGACTTA+TGG | - | chr7.2:14368873-14368892 | MS.gene43391:CDS | 45.0% | |
| GACCTAAAACTGTAGGAAGG+TGG | - | chr7.2:14368012-14368031 | MS.gene43391:CDS | 45.0% | |
| GAGTGGTTAGTGGTTTCTTC+AGG | + | chr7.2:14367482-14367501 | None:intergenic | 45.0% | |
| GCAGTAACACCATTGGAGAA+AGG | - | chr7.2:14368905-14368924 | MS.gene43391:CDS | 45.0% | |
| GCTGTGAAGGACTTATGGAA+TGG | - | chr7.2:14368878-14368897 | MS.gene43391:CDS | 45.0% | |
| GGAGAAAAACGACGCTACTT+CGG | - | chr7.2:14369516-14369535 | MS.gene43391:CDS | 45.0% | |
| GGATTGAAAACAGACTCGAG+GGG | - | chr7.2:14369537-14369556 | MS.gene43391:CDS | 45.0% | |
| TAACTGCAGGTGATCTACAC+TGG | - | chr7.2:14369177-14369196 | MS.gene43391:CDS | 45.0% | |
| TATGACCTATGTACCAGTGC+TGG | + | chr7.2:14369409-14369428 | None:intergenic | 45.0% | |
| TATGTCACACTCTGCTAGAG+AGG | - | chr7.2:14367586-14367605 | MS.gene43391:CDS | 45.0% | |
| TATTGTGCTAGACGTGTGCA+CGG | - | chr7.2:14369455-14369474 | MS.gene43391:CDS | 45.0% | |
| TCAGGACGCAGACAATTGAT+TGG | + | chr7.2:14367296-14367315 | None:intergenic | 45.0% | |
| TCGGATTGAAAACAGACTCG+AGG | - | chr7.2:14369535-14369554 | MS.gene43391:CDS | 45.0% | |
| TCTAGTTGCTGCACAATGTG+TGG | - | chr7.2:14368223-14368242 | MS.gene43391:intron | 45.0% | |
| TGCCCTTAGCAAGTAGTTCT+TGG | + | chr7.2:14369042-14369061 | None:intergenic | 45.0% | |
| TTACTCAAACGCACCCGTAA+CGG | - | chr7.2:14369067-14369086 | MS.gene43391:intron | 45.0% | |
| ! | AATGGTGGAAGAGCAAATGC+TGG | - | chr7.2:14367963-14367982 | MS.gene43391:CDS | 45.0% |
| ! | CAGCCAAGAACTACTTGCTA+AGG | - | chr7.2:14369036-14369055 | MS.gene43391:intron | 45.0% |
| ! | GAAGGCATGCATGAAGAATG+AGG | + | chr7.2:14367446-14367465 | None:intergenic | 45.0% |
| ! | TGGGCTAATAGTCTTACCTG+TGG | + | chr7.2:14368357-14368376 | None:intergenic | 45.0% |
| AAAGAACCGCCACCGTTCAA+AGG | + | chr7.2:14367753-14367772 | None:intergenic | 50.0% | |
| AGCAAGTAGTTCTTGGCTGC+AGG | + | chr7.2:14369035-14369054 | None:intergenic | 50.0% | |
| AGTTGCTGCACAATGTGTGG+AGG | - | chr7.2:14368226-14368245 | MS.gene43391:intron | 50.0% | |
| ATAGGAACTCGAGGACTCTC+CGG | + | chr7.2:14367347-14367366 | None:intergenic | 50.0% | |
| CACAGCAGCGAACCTTTGAA+CGG | - | chr7.2:14367738-14367757 | MS.gene43391:CDS | 50.0% | |
| CCATTGGAGAAAGGAATGGG+AGG | - | chr7.2:14368914-14368933 | MS.gene43391:CDS | 50.0% | |
| CCTCAAGAGGACTACGATCA+GGG | + | chr7.2:14368521-14368540 | None:intergenic | 50.0% | |
| CCTCCCATTCCTTTCTCCAA+TGG | + | chr7.2:14368917-14368936 | None:intergenic | 50.0% | |
| CCTCGGAGAGCTACATATCA+AGG | + | chr7.2:14368836-14368855 | None:intergenic | 50.0% | |
| CCTTGATATGTAGCTCTCCG+AGG | - | chr7.2:14368833-14368852 | MS.gene43391:CDS | 50.0% | |
| CTCAAGAGGACTACGATCAG+GGG | + | chr7.2:14368520-14368539 | None:intergenic | 50.0% | |
| GCTGCACGCTACAATTACTG+TGG | - | chr7.2:14368088-14368107 | MS.gene43391:CDS | 50.0% | |
| GGAAGAGCAAATGCTGGTGT+TGG | - | chr7.2:14367969-14367988 | MS.gene43391:CDS | 50.0% | |
| GGCATGCATGAAGAATGAGG+TGG | + | chr7.2:14367443-14367462 | None:intergenic | 50.0% | |
| GTTCAAAGGTTCGCTGCTGT+GGG | + | chr7.2:14367739-14367758 | None:intergenic | 50.0% | |
| TCTGGACTCAAGGGGTTTCT+AGG | - | chr7.2:14369601-14369620 | MS.gene43391:CDS | 50.0% | |
| TGAGGTGGTTGAGAATGAGC+TGG | + | chr7.2:14367428-14367447 | None:intergenic | 50.0% | |
| TGTGCACGGATTTACCAGCA+TGG | - | chr7.2:14369469-14369488 | MS.gene43391:CDS | 50.0% | |
| TTCTGCTATAGCTGCCATCG+CGG | - | chr7.2:14368121-14368140 | MS.gene43391:intron | 50.0% | |
| ! | AACGGTGGCGGTTCTTTAAC+TGG | - | chr7.2:14367756-14367775 | MS.gene43391:intron | 50.0% |
| ! | CTTTCAGTGTTGCTGCTCCT+CGG | + | chr7.2:14368853-14368872 | None:intergenic | 50.0% |
| !! | GAAGTGTCGCCATTAACGTC+AGG | - | chr7.2:14367705-14367724 | MS.gene43391:intron | 50.0% |
| !! | GCAAATGCTGGTGTTGGCAA+TGG | - | chr7.2:14367975-14367994 | MS.gene43391:CDS | 50.0% |
| !! | TGGTGCTGCAGTAACACCAT+TGG | - | chr7.2:14368898-14368917 | MS.gene43391:CDS | 50.0% |
| ACGGATTTACCAGCATGGCC+AGG | - | chr7.2:14369474-14369493 | MS.gene43391:CDS | 55.0% | |
| AGATCTCTTCCTGGCCATGC+TGG | + | chr7.2:14369486-14369505 | None:intergenic | 55.0% | |
| AGCAACAGCCACGTCTGTCT+TGG | + | chr7.2:14368192-14368211 | None:intergenic | 55.0% | |
| AGCAGCGAACCTTTGAACGG+TGG | - | chr7.2:14367741-14367760 | MS.gene43391:CDS | 55.0% | |
| AGCGAACCTTTGAACGGTGG+CGG | - | chr7.2:14367744-14367763 | MS.gene43391:CDS | 55.0% | |
| AGCTGACCACCAATGCAAGG+TGG | + | chr7.2:14368280-14368299 | None:intergenic | 55.0% | |
| CCCTGATCGTAGTCCTCTTG+AGG | - | chr7.2:14368518-14368537 | MS.gene43391:intron | 55.0% | |
| CGTTCAAAGGTTCGCTGCTG+TGG | + | chr7.2:14367740-14367759 | None:intergenic | 55.0% | |
| CTGAGCTGACCACCAATGCA+AGG | + | chr7.2:14368283-14368302 | None:intergenic | 55.0% | |
| GAAGATGGCCAAGACAGACG+TGG | - | chr7.2:14368181-14368200 | MS.gene43391:intron | 55.0% | |
| GCCTCAAGAGGACTACGATC+AGG | + | chr7.2:14368522-14368541 | None:intergenic | 55.0% | |
| GGAGAGTCCTCGAGTTCCTA+TGG | - | chr7.2:14367346-14367365 | MS.gene43391:CDS | 55.0% | |
| GTGGAGGCTGCTGAAGCAAT+GGG | - | chr7.2:14368242-14368261 | MS.gene43391:intron | 55.0% | |
| TGTGGAGGCTGCTGAAGCAA+TGG | - | chr7.2:14368241-14368260 | MS.gene43391:intron | 55.0% | |
| ! | GACAGACGTGGCTGTTGCTT+CGG | - | chr7.2:14368193-14368212 | MS.gene43391:intron | 55.0% |
| ! | GACTAGCTGCGAAGTAGCAG+AGG | + | chr7.2:14367555-14367574 | None:intergenic | 55.0% |
| ! | GGCAATGGCACAGCTTGTTC+AGG | - | chr7.2:14367990-14368009 | MS.gene43391:CDS | 55.0% |
| CTTACTGCTGCAGCTGCCAC+AGG | - | chr7.2:14368338-14368357 | MS.gene43391:intron | 60.0% | |
| TGAGCGCGACCACCTTGCAT+TGG | - | chr7.2:14368268-14368287 | MS.gene43391:intron | 60.0% | |
| TGCTATAGCTGCCATCGCGG+CGG | - | chr7.2:14368124-14368143 | MS.gene43391:intron | 60.0% | |
| ! | CGTCCTGAATCGGTTCCGAG+TGG | - | chr7.2:14367308-14367327 | MS.gene43391:CDS | 60.0% |
| ! | CTGCCACTCGGAACCGATTC+AGG | + | chr7.2:14367314-14367333 | None:intergenic | 60.0% |
| !! | ATTTGCTGTTGCCGCCGCGA+TGG | + | chr7.2:14368138-14368157 | None:intergenic | 60.0% |
| ACTCGAGGACTCTCCGGCAG+AGG | + | chr7.2:14367341-14367360 | None:intergenic | 65.0% | |
| CTCGAGGACTCTCCGGCAGA+GGG | + | chr7.2:14367340-14367359 | None:intergenic | 65.0% | |
| GCGCGACCACCTTGCATTGG+TGG | - | chr7.2:14368271-14368290 | MS.gene43391:intron | 65.0% | |
| TCGAGGACTCTCCGGCAGAG+GGG | + | chr7.2:14367339-14367358 | None:intergenic | 65.0% | |
| GAGTGGCAGCACCCCTCTGC+CGG | - | chr7.2:14367325-14367344 | MS.gene43391:CDS | 70.0% | |
| !! | GGCAGAGGGGTGCTGCCACT+CGG | + | chr7.2:14367326-14367345 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 14367287 | 14369668 | 14367287 | ID=MS.gene43391 |
| chr7.2 | mRNA | 14367287 | 14369668 | 14367287 | ID=MS.gene43391.t1;Parent=MS.gene43391 |
| chr7.2 | exon | 14369348 | 14369668 | 14369348 | ID=MS.gene43391.t1.exon1;Parent=MS.gene43391.t1 |
| chr7.2 | CDS | 14369348 | 14369668 | 14369348 | ID=cds.MS.gene43391.t1;Parent=MS.gene43391.t1 |
| chr7.2 | exon | 14369128 | 14369250 | 14369128 | ID=MS.gene43391.t1.exon2;Parent=MS.gene43391.t1 |
| chr7.2 | CDS | 14369128 | 14369250 | 14369128 | ID=cds.MS.gene43391.t1;Parent=MS.gene43391.t1 |
| chr7.2 | exon | 14368596 | 14369028 | 14368596 | ID=MS.gene43391.t1.exon3;Parent=MS.gene43391.t1 |
| chr7.2 | CDS | 14368596 | 14369028 | 14368596 | ID=cds.MS.gene43391.t1;Parent=MS.gene43391.t1 |
| chr7.2 | exon | 14367867 | 14368109 | 14367867 | ID=MS.gene43391.t1.exon4;Parent=MS.gene43391.t1 |
| chr7.2 | CDS | 14367867 | 14368109 | 14367867 | ID=cds.MS.gene43391.t1;Parent=MS.gene43391.t1 |
| chr7.2 | exon | 14367720 | 14367769 | 14367720 | ID=MS.gene43391.t1.exon5;Parent=MS.gene43391.t1 |
| chr7.2 | CDS | 14367720 | 14367769 | 14367720 | ID=cds.MS.gene43391.t1;Parent=MS.gene43391.t1 |
| chr7.2 | exon | 14367582 | 14367639 | 14367582 | ID=MS.gene43391.t1.exon6;Parent=MS.gene43391.t1 |
| chr7.2 | CDS | 14367582 | 14367639 | 14367582 | ID=cds.MS.gene43391.t1;Parent=MS.gene43391.t1 |
| chr7.2 | exon | 14367287 | 14367501 | 14367287 | ID=MS.gene43391.t1.exon7;Parent=MS.gene43391.t1 |
| chr7.2 | CDS | 14367287 | 14367501 | 14367287 | ID=cds.MS.gene43391.t1;Parent=MS.gene43391.t1 |
| Gene Sequence |
| Protein sequence |
