Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43805.t1 | XP_003615646.1 | 99.1 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 1.70E-59 | 239.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43805.t1 | Q9FMG4 | 84.6 | 117 | 18 | 0 | 1 | 117 | 1 | 117 | 6.9e-54 | 212.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43805.t1 | B7FJQ5 | 99.1 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 1.2e-59 | 239.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43805 | MS.gene026372 | PPI |
| MS.gene43805 | MS.gene061705 | PPI |
| MS.gene74239 | MS.gene43805 | PPI |
| MS.gene43805 | MS.gene90884 | PPI |
| MS.gene43805 | MS.gene011973 | PPI |
| MS.gene43805 | MS.gene061098 | PPI |
| MS.gene43805 | MS.gene046159 | PPI |
| MS.gene040807 | MS.gene43805 | PPI |
| MS.gene43805 | MS.gene90116 | PPI |
| MS.gene43805 | MS.gene047872 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43805.t1 | MTR_5g070450 | 97.378 | 267 | 6 | 1 | 1 | 266 | 1 | 267 | 4.73e-175 | 483 |
| MS.gene43805.t1 | MTR_4g094235 | 81.754 | 285 | 28 | 4 | 1 | 266 | 1 | 280 | 2.92e-99 | 291 |
| MS.gene43805.t1 | MTR_4g094235 | 81.119 | 286 | 29 | 5 | 1 | 266 | 1 | 281 | 1.59e-97 | 287 |
| MS.gene43805.t1 | MTR_4g118630 | 40.260 | 77 | 46 | 0 | 17 | 93 | 49 | 125 | 7.31e-15 | 73.6 |
| MS.gene43805.t1 | MTR_1g054675 | 42.857 | 77 | 44 | 0 | 17 | 93 | 44 | 120 | 6.45e-14 | 69.3 |
| MS.gene43805.t1 | MTR_3g025880 | 43.421 | 76 | 43 | 0 | 18 | 93 | 46 | 121 | 2.86e-13 | 69.3 |
| MS.gene43805.t1 | MTR_3g083550 | 40.260 | 77 | 46 | 0 | 17 | 93 | 42 | 118 | 3.07e-13 | 68.2 |
| MS.gene43805.t1 | MTR_5g079870 | 42.500 | 80 | 46 | 0 | 13 | 92 | 44 | 123 | 3.27e-13 | 67.8 |
| MS.gene43805.t1 | MTR_5g079870 | 42.500 | 80 | 46 | 0 | 13 | 92 | 44 | 123 | 3.87e-13 | 68.2 |
| MS.gene43805.t1 | MTR_5g070100 | 43.421 | 76 | 43 | 0 | 14 | 89 | 34 | 109 | 4.97e-13 | 68.6 |
| MS.gene43805.t1 | MTR_6g477870 | 39.437 | 71 | 43 | 0 | 23 | 93 | 102 | 172 | 1.28e-11 | 62.4 |
| MS.gene43805.t1 | MTR_7g106440 | 40.909 | 88 | 52 | 0 | 18 | 105 | 111 | 198 | 2.84e-11 | 63.2 |
| MS.gene43805.t1 | MTR_4g109540 | 37.975 | 79 | 49 | 0 | 15 | 93 | 41 | 119 | 5.84e-11 | 61.6 |
| MS.gene43805.t1 | MTR_4g081520 | 35.065 | 77 | 50 | 0 | 17 | 93 | 52 | 128 | 8.72e-11 | 59.3 |
| MS.gene43805.t1 | MTR_5g023060 | 38.961 | 77 | 47 | 0 | 17 | 93 | 132 | 208 | 8.76e-11 | 61.6 |
| MS.gene43805.t1 | MTR_4g109540 | 37.805 | 82 | 51 | 0 | 12 | 93 | 46 | 127 | 9.39e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43805.t1 | AT5G64200 | 87.963 | 108 | 13 | 0 | 1 | 108 | 1 | 108 | 3.06e-67 | 211 |
| MS.gene43805.t1 | AT5G64200 | 87.963 | 108 | 13 | 0 | 1 | 108 | 1 | 108 | 3.06e-67 | 211 |
| MS.gene43805.t1 | AT5G18810 | 40.789 | 76 | 45 | 0 | 18 | 93 | 49 | 124 | 3.98e-16 | 75.9 |
| MS.gene43805.t1 | AT5G18810 | 40.789 | 76 | 45 | 0 | 18 | 93 | 49 | 124 | 4.04e-16 | 75.9 |
| MS.gene43805.t1 | AT3G13570 | 41.558 | 77 | 45 | 0 | 17 | 93 | 38 | 114 | 5.39e-15 | 73.2 |
| MS.gene43805.t1 | AT1G55310 | 42.857 | 77 | 44 | 0 | 17 | 93 | 37 | 113 | 1.60e-14 | 71.2 |
| MS.gene43805.t1 | AT1G55310 | 42.857 | 77 | 44 | 0 | 17 | 93 | 37 | 113 | 1.60e-14 | 71.2 |
| MS.gene43805.t1 | AT1G55310 | 42.857 | 77 | 44 | 0 | 17 | 93 | 37 | 113 | 1.63e-14 | 72.0 |
| MS.gene43805.t1 | AT3G47120 | 43.056 | 72 | 41 | 0 | 18 | 89 | 38 | 109 | 6.30e-13 | 68.2 |
| MS.gene43805.t1 | AT3G47120 | 43.056 | 72 | 41 | 0 | 18 | 89 | 38 | 109 | 8.01e-13 | 67.4 |
| MS.gene43805.t1 | AT3G10400 | 36.667 | 90 | 57 | 0 | 17 | 106 | 58 | 147 | 2.95e-12 | 65.5 |
| MS.gene43805.t1 | AT5G06210 | 40.789 | 76 | 45 | 0 | 18 | 93 | 36 | 111 | 1.07e-11 | 61.6 |
| MS.gene43805.t1 | AT5G03580 | 37.838 | 74 | 45 | 1 | 17 | 90 | 18 | 90 | 1.23e-11 | 60.5 |
| MS.gene43805.t1 | AT5G54580 | 33.333 | 84 | 56 | 0 | 10 | 93 | 50 | 133 | 3.49e-11 | 60.5 |
| MS.gene43805.t1 | AT1G73530 | 38.158 | 76 | 47 | 0 | 18 | 93 | 79 | 154 | 5.55e-11 | 60.5 |
| MS.gene43805.t1 | AT3G55460 | 42.667 | 75 | 43 | 0 | 18 | 92 | 49 | 123 | 7.68e-11 | 61.2 |
| MS.gene43805.t1 | AT4G13860 | 44.286 | 70 | 38 | 1 | 27 | 95 | 13 | 82 | 8.33e-11 | 57.8 |
| MS.gene43805.t1 | AT1G07350 | 40.789 | 76 | 45 | 0 | 17 | 92 | 76 | 151 | 9.72e-11 | 62.0 |
Find 81 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGAGAAATACTCTTCTT+AGG | 0.233254 | 5.1:+54728983 | None:intergenic |
| ACTTACATTCTCTCAGCATT+AGG | 0.269328 | 5.1:+54730583 | None:intergenic |
| GGACTAGGACTGTGTCTTGC+AGG | 0.278267 | 5.1:+54729022 | None:intergenic |
| TTGAATTTCGAGAAGGGCTT+CGG | 0.280382 | 5.1:+54728852 | None:intergenic |
| TCCTTGAGCTCTTTGATCTC+GGG | 0.321129 | 5.1:+54730051 | None:intergenic |
| CTCCTTGAGCTCTTTGATCT+CGG | 0.321782 | 5.1:+54730050 | None:intergenic |
| CCATCACGGCTACGAGTATC+AGG | 0.343759 | 5.1:+54728926 | None:intergenic |
| CTTACATTCTCTCAGCATTA+GGG | 0.364680 | 5.1:+54730584 | None:intergenic |
| ATTACAGAGACAAGGGTTAC+AGG | 0.369191 | 5.1:-54729323 | MS.gene43805:CDS |
| CTTCCACGGCGCTTGTAATC+AGG | 0.371793 | 5.1:+54729198 | None:intergenic |
| ACTGTCCAGTTTGCAAAGTA+TGG | 0.388403 | 5.1:-54730607 | MS.gene43805:CDS |
| GACACAGTCCTAGTCCAAAA+AGG | 0.391806 | 5.1:-54729015 | MS.gene43805:CDS |
| GAAGGGCTTCGGGAAGCTTC+AGG | 0.403495 | 5.1:+54728863 | None:intergenic |
| TGAATTTCGAGAAGGGCTTC+GGG | 0.418855 | 5.1:+54728853 | None:intergenic |
| TTTCCTCTGTTCGACAAATA+CGG | 0.419216 | 5.1:-54731218 | MS.gene43805:CDS |
| TAGGGCCATACTTTGCAAAC+TGG | 0.425856 | 5.1:+54730602 | None:intergenic |
| GGTACCGTGGTGGGAGAGAC+AGG | 0.431627 | 5.1:-54729257 | MS.gene43805:CDS |
| TGGTACGCACCTTCTCCTGC+TGG | 0.455854 | 5.1:+54730019 | None:intergenic |
| GACTAGGACTGTGTCTTGCA+GGG | 0.456750 | 5.1:+54729023 | None:intergenic |
| ATGATAGGTATGAACGTGAT+AGG | 0.468757 | 5.1:-54729278 | MS.gene43805:CDS |
| AAGCTTCAAAGGCTGTTGAT+AGG | 0.469348 | 5.1:-54731022 | MS.gene43805:CDS |
| CAAGGAGCCGCAGTCCCAGC+AGG | 0.474371 | 5.1:-54730034 | MS.gene43805:CDS |
| GGACTTTCGCGACGTGGACT+AGG | 0.475885 | 5.1:+54728947 | None:intergenic |
| TGGCACTACGGCTTCTGCTT+CGG | 0.482247 | 5.1:+54729223 | None:intergenic |
| GGAGAGACACTGCGAGAAGT+AGG | 0.483410 | 5.1:+54728896 | None:intergenic |
| GAGTAGGTGTCAGAGATGTC+AGG | 0.488704 | 5.1:+54731406 | None:intergenic |
| AGCGAATCCCCTTGATTCAC+CGG | 0.490679 | 5.1:+54731070 | None:intergenic |
| GAAATACTCTTCTTAGGAGA+AGG | 0.491997 | 5.1:+54728989 | None:intergenic |
| GATTACAAGCGCCGTGGAAG+GGG | 0.498061 | 5.1:-54729195 | MS.gene43805:CDS |
| GCCGCAGTCCCAGCAGGAGA+AGG | 0.501798 | 5.1:-54730028 | MS.gene43805:intron |
| TACGGCTTCTGCTTCGGCGA+CGG | 0.506527 | 5.1:+54729229 | None:intergenic |
| GAACAGTACCTTCGATCTCT+CGG | 0.512827 | 5.1:+54731173 | None:intergenic |
| CACCGTTTGAATTTCGAGAA+GGG | 0.512918 | 5.1:+54728846 | None:intergenic |
| GTATGCTGATGAAGCTTCAA+AGG | 0.517597 | 5.1:-54731033 | MS.gene43805:CDS |
| CAATTTACAGTCACAAAGGA+AGG | 0.518587 | 5.1:-54730088 | MS.gene43805:intron |
| GACTGTGTCTTGCAGGGGAG+CGG | 0.522469 | 5.1:+54729029 | None:intergenic |
| AACAGTACCTTCGATCTCTC+GGG | 0.525494 | 5.1:+54731174 | None:intergenic |
| ACCTTCTCCTGCTGGGACTG+CGG | 0.529187 | 5.1:+54730027 | None:intergenic |
| TGATTACAAGCGCCGTGGAA+GGG | 0.531730 | 5.1:-54729196 | MS.gene43805:CDS |
| TTTAAGGACCGGTGAATCAA+GGG | 0.538887 | 5.1:-54731078 | MS.gene43805:intron |
| GCAGAAGCAGATCAGTAGAC+AGG | 0.539455 | 5.1:-54729143 | MS.gene43805:intron |
| GTCGCAGTAGAAGTTATGAT+AGG | 0.540753 | 5.1:-54729293 | MS.gene43805:CDS |
| CTGATTACAAGCGCCGTGGA+AGG | 0.542451 | 5.1:-54729197 | MS.gene43805:CDS |
| GTTGAGAACGAGGAGAGAGT+AGG | 0.546049 | 5.1:+54731390 | None:intergenic |
| CCTTGAGCTCTTTGATCTCG+GGG | 0.548590 | 5.1:+54730052 | None:intergenic |
| GGCTTCTGCTTCGGCGACGG+TGG | 0.555856 | 5.1:+54729232 | None:intergenic |
| GGTACGCACCTTCTCCTGCT+GGG | 0.564144 | 5.1:+54730020 | None:intergenic |
| AGCCCTTCTCGAAATTCAAA+CGG | 0.569324 | 5.1:-54728848 | MS.gene43805:CDS |
| CCTGATACTCGTAGCCGTGA+TGG | 0.581591 | 5.1:-54728926 | MS.gene43805:CDS |
| TCACCGTTTGAATTTCGAGA+AGG | 0.584058 | 5.1:+54728845 | None:intergenic |
| ACGGCGCTTGTAATCAGGAC+TGG | 0.588977 | 5.1:+54729203 | None:intergenic |
| AAATACTCTTCTTAGGAGAA+GGG | 0.596251 | 5.1:+54728990 | None:intergenic |
| CCCCGAGATCAAAGAGCTCA+AGG | 0.604164 | 5.1:-54730052 | MS.gene43805:CDS |
| TTGTCTTCCGAAGTGCGACA+TGG | 0.604324 | 5.1:+54731435 | None:intergenic |
| TGTAATCAGGACTGGCACTA+CGG | 0.607394 | 5.1:+54729211 | None:intergenic |
| ATTACAAGCGCCGTGGAAGG+GGG | 0.608333 | 5.1:-54729194 | MS.gene43805:CDS |
| TCGCGACGTGGACTAGGACT+AGG | 0.608530 | 5.1:+54728953 | None:intergenic |
| CAAACAACCATGTCGCACTT+CGG | 0.609061 | 5.1:-54731442 | None:intergenic |
| TTGCCGTATTTGTCGAACAG+AGG | 0.614730 | 5.1:+54731215 | None:intergenic |
| ATGTCGCACTTCGGAAGACA+AGG | 0.623179 | 5.1:-54731433 | MS.gene43805:CDS |
| GGTCCCTGTCTCTCCCACCA+CGG | 0.624348 | 5.1:+54729253 | None:intergenic |
| GAAGCTTCAGGACGGCCTCG+TGG | 0.624790 | 5.1:+54728875 | None:intergenic |
| ACTAGGACTGTGTCTTGCAG+GGG | 0.630147 | 5.1:+54729024 | None:intergenic |
| AAGGCTGTTGATAGGCTCGA+TGG | 0.630279 | 5.1:-54731014 | MS.gene43805:intron |
| TTAAGGACCGGTGAATCAAG+GGG | 0.634626 | 5.1:-54731077 | MS.gene43805:intron |
| TCTTCAATTTACAGTCACAA+AGG | 0.639878 | 5.1:-54730092 | MS.gene43805:intron |
| TCACGATGATTACAGAGACA+AGG | 0.647756 | 5.1:-54729331 | MS.gene43805:CDS |
| GTATCAGGACTTTCGCGACG+TGG | 0.650471 | 5.1:+54728941 | None:intergenic |
| AACGTGATAGGTACCGTGGT+GGG | 0.657450 | 5.1:-54729266 | MS.gene43805:CDS |
| ACAGAGACAAGGGTTACAGG+AGG | 0.661184 | 5.1:-54729320 | MS.gene43805:CDS |
| CACGATGATTACAGAGACAA+GGG | 0.663891 | 5.1:-54729330 | MS.gene43805:CDS |
| GGCTTCGGGAAGCTTCAGGA+CGG | 0.665731 | 5.1:+54728867 | None:intergenic |
| GTACCGTGGTGGGAGAGACA+GGG | 0.676128 | 5.1:-54729256 | MS.gene43805:CDS |
| AAGTAGGAGATCTTCCATCA+CGG | 0.676922 | 5.1:+54728912 | None:intergenic |
| AGTCCTGATTACAAGCGCCG+TGG | 0.683842 | 5.1:-54729201 | MS.gene43805:CDS |
| GGAAAGTGATGTTGAGAACG+AGG | 0.687639 | 5.1:+54731380 | None:intergenic |
| CAGAGGAAATAGATCATCAG+CGG | 0.687879 | 5.1:+54731232 | None:intergenic |
| TAGGTGTCAGAGATGTCAGG+AGG | 0.691781 | 5.1:+54731409 | None:intergenic |
| GAACGTGATAGGTACCGTGG+TGG | 0.702747 | 5.1:-54729267 | MS.gene43805:CDS |
| TCTCGCAGTGTCTCTCCACG+AGG | 0.716772 | 5.1:-54728890 | MS.gene43805:CDS |
| TATGAACGTGATAGGTACCG+TGG | 0.720809 | 5.1:-54729270 | MS.gene43805:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCAATTTTTATTTCATA+TGG | - | chr5.1:54729483-54729502 | MS.gene43805:intron | 10.0% |
| !! | AGATTAATTGATGAATAAAA+AGG | + | chr5.1:54729033-54729052 | None:intergenic | 15.0% |
| !! | GAAATAAAAATTGAAATGAA+AGG | + | chr5.1:54729480-54729499 | None:intergenic | 15.0% |
| !! | GATATGAAATTCTATTAATT+TGG | - | chr5.1:54729295-54729314 | MS.gene43805:CDS | 15.0% |
| !! | GATTAATTGATGAATAAAAA+GGG | + | chr5.1:54729032-54729051 | None:intergenic | 15.0% |
| !!! | ATACTGTTGTTTATATATTT+TGG | - | chr5.1:54729679-54729698 | MS.gene43805:intron | 15.0% |
| !!! | GAATTTTTCTATTGTTTTTA+AGG | - | chr5.1:54729069-54729088 | MS.gene43805:intron | 15.0% |
| !!! | TACTGTTGTTTATATATTTT+GGG | - | chr5.1:54729680-54729699 | MS.gene43805:intron | 15.0% |
| !!! | TTTGAAATGATTATTTTTTC+AGG | - | chr5.1:54729508-54729527 | MS.gene43805:intron | 15.0% |
| !!! | TTTTTTAGTTTCTGTTATAA+TGG | - | chr5.1:54729614-54729633 | MS.gene43805:intron | 15.0% |
| !! | ACCATCATAATTATTCTTAT+TGG | - | chr5.1:54731085-54731104 | MS.gene43805:intron | 20.0% |
| !! | ATTTCGGCTATTAAATTAAA+TGG | + | chr5.1:54730391-54730410 | None:intergenic | 20.0% |
| !! | TAGTCTCATAAATATTATGT+CGG | - | chr5.1:54729422-54729441 | MS.gene43805:intron | 20.0% |
| !! | TCATAATAATAAGTGCAATA+AGG | + | chr5.1:54729230-54729249 | None:intergenic | 20.0% |
| !! | TCCAATAAGAATAATTATGA+TGG | + | chr5.1:54731089-54731108 | None:intergenic | 20.0% |
| !! | TTATCTGTTATTGTAATTGA+CGG | - | chr5.1:54730637-54730656 | MS.gene43805:intron | 20.0% |
| !!! | CAATTCTATTTACATTTTTC+AGG | - | chr5.1:54731428-54731447 | MS.gene43805:CDS | 20.0% |
| !!! | CTTCTTCATTTTGTTATTAT+TGG | - | chr5.1:54729176-54729195 | MS.gene43805:CDS | 20.0% |
| !!! | TTCATTTTGAAGTTTTCTTA+TGG | - | chr5.1:54730712-54730731 | MS.gene43805:intron | 20.0% |
| ! | AAACTTCAAAATGAACACAT+AGG | + | chr5.1:54730707-54730726 | None:intergenic | 25.0% |
| ! | AACTGTAAACAACTGTATTT+CGG | + | chr5.1:54730407-54730426 | None:intergenic | 25.0% |
| ! | AATAATGTCACAAATGCTTA+TGG | - | chr5.1:54729881-54729900 | MS.gene43805:intron | 25.0% |
| ! | ATATCACATTCAACTTATCA+CGG | + | chr5.1:54730320-54730339 | None:intergenic | 25.0% |
| ! | GATGTATGTAATGTTATTCT+TGG | - | chr5.1:54731339-54731358 | MS.gene43805:intron | 25.0% |
| ! | TAATATTTATGAGACTATCC+AGG | + | chr5.1:54729419-54729438 | None:intergenic | 25.0% |
| ! | TTAACATGCTTAAACTGAAA+AGG | + | chr5.1:54730496-54730515 | None:intergenic | 25.0% |
| ! | TTAGCATTCAAAATATCTAC+TGG | - | chr5.1:54730663-54730682 | MS.gene43805:intron | 25.0% |
| ! | TTGAATAAGGCAATACAAAT+AGG | - | chr5.1:54729454-54729473 | MS.gene43805:intron | 25.0% |
| !! | AAGCATTTGTGACATTATTT+TGG | + | chr5.1:54729880-54729899 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr5.1:54729745-54729764 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr5.1:54729744-54729763 | None:intergenic | 25.0% |
| !!! | AAGTCATTTTCGATATCAAA+AGG | - | chr5.1:54731380-54731399 | MS.gene43805:CDS | 25.0% |
| !!! | CATTTTAATTTTGCACCTTA+AGG | - | chr5.1:54730456-54730475 | MS.gene43805:intron | 25.0% |
| !!! | GATTATTTTTTCAGGAAGAA+TGG | - | chr5.1:54729516-54729535 | MS.gene43805:intron | 25.0% |
| !!! | TTTCTATTGTTTTTAAGGAC+CGG | - | chr5.1:54729074-54729093 | MS.gene43805:intron | 25.0% |
| !!! | TTTGTTTTTATACTACAAGC+AGG | - | chr5.1:54730269-54730288 | MS.gene43805:intron | 25.0% |
| AAATACTCTTCTTAGGAGAA+GGG | + | chr5.1:54731176-54731195 | None:intergenic | 30.0% | |
| AACAAAAAGCAATGCCAAAA+TGG | + | chr5.1:54730255-54730274 | None:intergenic | 30.0% | |
| AAGCTATTGTGTTCAAACAT+AGG | + | chr5.1:54729943-54729962 | None:intergenic | 30.0% | |
| AGCTATTGTGTTCAAACATA+GGG | + | chr5.1:54729942-54729961 | None:intergenic | 30.0% | |
| ATCAAATTCAATCAACAACG+TGG | + | chr5.1:54730773-54730792 | None:intergenic | 30.0% | |
| ATTCAATTGCATACTCATAG+TGG | - | chr5.1:54729974-54729993 | MS.gene43805:intron | 30.0% | |
| GTAGAAAGTCAAAACTGAAA+AGG | + | chr5.1:54731067-54731086 | None:intergenic | 30.0% | |
| TAATCTATTCAACAAGGTCA+AGG | + | chr5.1:54729718-54729737 | None:intergenic | 30.0% | |
| TATCACATTCAACTTATCAC+GGG | + | chr5.1:54730319-54730338 | None:intergenic | 30.0% | |
| TCTTCAATTTACAGTCACAA+AGG | - | chr5.1:54730071-54730090 | MS.gene43805:CDS | 30.0% | |
| TGACCTTGTTGAATAGATTA+TGG | - | chr5.1:54729718-54729737 | MS.gene43805:intron | 30.0% | |
| TGTGGAGAATAACAAACAAA+AGG | + | chr5.1:54731113-54731132 | None:intergenic | 30.0% | |
| TTAGGAGAAATACTCTTCTT+AGG | + | chr5.1:54731183-54731202 | None:intergenic | 30.0% | |
| ! | AAAATATCTACTGGTTGATG+TGG | - | chr5.1:54730672-54730691 | MS.gene43805:intron | 30.0% |
| ! | AATGTATTTCTTTTACGCAG+TGG | - | chr5.1:54730742-54730761 | MS.gene43805:intron | 30.0% |
| ! | ACAAACAAAAGTACAGCATT+GGG | + | chr5.1:54730574-54730593 | None:intergenic | 30.0% |
| ! | TCGGTAGATTAACTTGAATA+AGG | - | chr5.1:54729441-54729460 | MS.gene43805:intron | 30.0% |
| ! | TTAATTTTGCACCTTAAGGA+GGG | - | chr5.1:54730460-54730479 | MS.gene43805:intron | 30.0% |
| !! | AGCATGTTAACTTGTCTAAA+TGG | - | chr5.1:54730506-54730525 | MS.gene43805:intron | 30.0% |
| !! | TGTTATTATTGGTTCCTCTT+AGG | - | chr5.1:54729187-54729206 | MS.gene43805:CDS | 30.0% |
| !! | TTGTCTTTGTTATTGTCCTT+GGG | - | chr5.1:54730590-54730609 | MS.gene43805:CDS | 30.0% |
| !! | TTTAATTTTGCACCTTAAGG+AGG | - | chr5.1:54730459-54730478 | MS.gene43805:intron | 30.0% |
| !! | TTTGTCTTTGTTATTGTCCT+TGG | - | chr5.1:54730589-54730608 | MS.gene43805:CDS | 30.0% |
| !!! | GAGCTTTGAAATTACCATTT+TGG | - | chr5.1:54730238-54730257 | MS.gene43805:intron | 30.0% |
| !!! | TTAGCCTTTGTTTTTATGCT+TGG | - | chr5.1:54730360-54730379 | MS.gene43805:intron | 30.0% |
| AATAAAAAGAACAAGCCGTG+AGG | + | chr5.1:54730021-54730040 | None:intergenic | 35.0% | |
| ACTAATGTCCAACTGTTTGT+AGG | - | chr5.1:54730807-54730826 | MS.gene43805:intron | 35.0% | |
| ACTTACATTCTCTCAGCATT+AGG | + | chr5.1:54729583-54729602 | None:intergenic | 35.0% | |
| ATGATAGGTATGAACGTGAT+AGG | - | chr5.1:54730885-54730904 | MS.gene43805:intron | 35.0% | |
| CAATTTACAGTCACAAAGGA+AGG | - | chr5.1:54730075-54730094 | MS.gene43805:CDS | 35.0% | |
| CACTCCAAGCATAAAAACAA+AGG | + | chr5.1:54730367-54730386 | None:intergenic | 35.0% | |
| CTGAAGGAAACAACAATGTA+TGG | + | chr5.1:54728905-54728924 | None:intergenic | 35.0% | |
| CTTACATTCTCTCAGCATTA+GGG | + | chr5.1:54729582-54729601 | None:intergenic | 35.0% | |
| GAAATACTCTTCTTAGGAGA+AGG | + | chr5.1:54731177-54731196 | None:intergenic | 35.0% | |
| GGTCTTCATTCATTGATACT+TGG | - | chr5.1:54731041-54731060 | MS.gene43805:CDS | 35.0% | |
| TTAGTGTCTTCTATTGTGTC+TGG | - | chr5.1:54730214-54730233 | MS.gene43805:intron | 35.0% | |
| TTTCCTCTGTTCGACAAATA+CGG | - | chr5.1:54728945-54728964 | MS.gene43805:CDS | 35.0% | |
| ! | AATAAGGTGCTTATCCAAAC+AGG | + | chr5.1:54729214-54729233 | None:intergenic | 35.0% |
| ! | ATAAGGTGCTTATCCAAACA+GGG | + | chr5.1:54729213-54729232 | None:intergenic | 35.0% |
| ! | GACAAACAAAAGTACAGCAT+TGG | + | chr5.1:54730575-54730594 | None:intergenic | 35.0% |
| ! | GCTGGTTATTATTTTCCTCA+CGG | - | chr5.1:54730003-54730022 | MS.gene43805:intron | 35.0% |
| ! | TAATTTTGCACCTTAAGGAG+GGG | - | chr5.1:54730461-54730480 | MS.gene43805:intron | 35.0% |
| !! | CATACATTGTTGTTTCCTTC+AGG | - | chr5.1:54728903-54728922 | MS.gene43805:CDS | 35.0% |
| !! | GCTGTTTTCGTAAGCTATAT+TGG | - | chr5.1:54729330-54729349 | MS.gene43805:CDS | 35.0% |
| !! | TTTTCAGGAAGAATGGTTGA+TGG | - | chr5.1:54729523-54729542 | MS.gene43805:intron | 35.0% |
| !!! | AGCTTTTTCATAAGTTCTCC+TGG | - | chr5.1:54729398-54729417 | MS.gene43805:intron | 35.0% |
| !!! | GCTGTTTTTATTAGCTATCC+TGG | - | chr5.1:54729819-54729838 | MS.gene43805:intron | 35.0% |
| AAGCTTCAAAGGCTGTTGAT+AGG | - | chr5.1:54729141-54729160 | MS.gene43805:intron | 40.0% | |
| AAGTAGGAGATCTTCCATCA+CGG | + | chr5.1:54731254-54731273 | None:intergenic | 40.0% | |
| ACAAGCAGGATGATATCTGT+TGG | - | chr5.1:54730283-54730302 | MS.gene43805:intron | 40.0% | |
| ACAGCAAGGACATTAAGAAG+TGG | + | chr5.1:54730167-54730186 | None:intergenic | 40.0% | |
| ACTGTCCAGTTTGCAAAGTA+TGG | - | chr5.1:54729556-54729575 | MS.gene43805:intron | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+CGG | + | chr5.1:54728807-54728826 | None:intergenic | 40.0% | |
| AGCCCTTCTCGAAATTCAAA+CGG | - | chr5.1:54731315-54731334 | MS.gene43805:intron | 40.0% | |
| ATTACAGAGACAAGGGTTAC+AGG | - | chr5.1:54730840-54730859 | MS.gene43805:intron | 40.0% | |
| ATTCCTTGCAGCATAGATCA+AGG | - | chr5.1:54730531-54730550 | MS.gene43805:intron | 40.0% | |
| CACCGTTTGAATTTCGAGAA+GGG | + | chr5.1:54731320-54731339 | None:intergenic | 40.0% | |
| CACGATGATTACAGAGACAA+GGG | - | chr5.1:54730833-54730852 | MS.gene43805:intron | 40.0% | |
| CAGAGGAAATAGATCATCAG+CGG | + | chr5.1:54728934-54728953 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | + | chr5.1:54729840-54729859 | None:intergenic | 40.0% | |
| GAATAGATTATGGCCCTGTT+TGG | - | chr5.1:54729728-54729747 | MS.gene43805:intron | 40.0% | |
| GGGCCATAATCTATTCAACA+AGG | + | chr5.1:54729724-54729743 | None:intergenic | 40.0% | |
| GTATGCTGATGAAGCTTCAA+AGG | - | chr5.1:54729130-54729149 | MS.gene43805:intron | 40.0% | |
| GTCGCAGTAGAAGTTATGAT+AGG | - | chr5.1:54730870-54730889 | MS.gene43805:intron | 40.0% | |
| TCACCGTTTGAATTTCGAGA+AGG | + | chr5.1:54731321-54731340 | None:intergenic | 40.0% | |
| TCACGATGATTACAGAGACA+AGG | - | chr5.1:54730832-54730851 | MS.gene43805:intron | 40.0% | |
| TTGAATTTCGAGAAGGGCTT+CGG | + | chr5.1:54731314-54731333 | None:intergenic | 40.0% | |
| TTTAAGGACCGGTGAATCAA+GGG | - | chr5.1:54729085-54729104 | MS.gene43805:intron | 40.0% | |
| ! | CTAGGACTAGGACTTTTCTT+AGG | + | chr5.1:54731201-54731220 | None:intergenic | 40.0% |
| !! | TTTTAAGGACCGGTGAATCA+AGG | - | chr5.1:54729084-54729103 | MS.gene43805:intron | 40.0% |
| AACAGTACCTTCGATCTCTC+GGG | + | chr5.1:54728992-54729011 | None:intergenic | 45.0% | |
| CTCCTTGAGCTCTTTGATCT+CGG | + | chr5.1:54730116-54730135 | None:intergenic | 45.0% | |
| CTTCTACTACCACAACACTC+TGG | + | chr5.1:54730192-54730211 | None:intergenic | 45.0% | |
| GAACAGTACCTTCGATCTCT+CGG | + | chr5.1:54728993-54729012 | None:intergenic | 45.0% | |
| GACACAGTCCTAGTCCAAAA+AGG | - | chr5.1:54731148-54731167 | MS.gene43805:intron | 45.0% | |
| GGAAAGTGATGTTGAGAACG+AGG | + | chr5.1:54728786-54728805 | None:intergenic | 45.0% | |
| TAGCTATCCTGGAGAGCTTA+TGG | - | chr5.1:54729830-54729849 | MS.gene43805:intron | 45.0% | |
| TAGGGCCATACTTTGCAAAC+TGG | + | chr5.1:54729564-54729583 | None:intergenic | 45.0% | |
| TCCTTGAGCTCTTTGATCTC+GGG | + | chr5.1:54730115-54730134 | None:intergenic | 45.0% | |
| TCGTGATGCCTACAAACAGT+TGG | + | chr5.1:54730818-54730837 | None:intergenic | 45.0% | |
| TGAATTTCGAGAAGGGCTTC+GGG | + | chr5.1:54731313-54731332 | None:intergenic | 45.0% | |
| TTAAGGACCGGTGAATCAAG+GGG | - | chr5.1:54729086-54729105 | MS.gene43805:intron | 45.0% | |
| TTATCCAAACAGGGCCTAAG+AGG | + | chr5.1:54729204-54729223 | None:intergenic | 45.0% | |
| TTGCCGTATTTGTCGAACAG+AGG | + | chr5.1:54728951-54728970 | None:intergenic | 45.0% | |
| ! | ACAACACTCTGGAAACAGCA+AGG | + | chr5.1:54730181-54730200 | None:intergenic | 45.0% |
| ! | AGCATTGGGTCTCTGCTATA+AGG | + | chr5.1:54730560-54730579 | None:intergenic | 45.0% |
| ! | TATGAACGTGATAGGTACCG+TGG | - | chr5.1:54730893-54730912 | MS.gene43805:intron | 45.0% |
| ! | TGTAATCAGGACTGGCACTA+CGG | + | chr5.1:54730955-54730974 | None:intergenic | 45.0% |
| ! | TTAGGAGAAGGGCTCCTTTT+TGG | + | chr5.1:54731165-54731184 | None:intergenic | 45.0% |
| ! | TTTTCATCCCGAGAGATCGA+AGG | - | chr5.1:54728982-54729001 | MS.gene43805:CDS | 45.0% |
| !! | TACTCATAGTGGATGCTAGC+TGG | - | chr5.1:54729985-54730004 | MS.gene43805:intron | 45.0% |
| !! | TTGCTGTTTCCAGAGTGTTG+TGG | - | chr5.1:54730180-54730199 | MS.gene43805:intron | 45.0% |
| ACAGAGACAAGGGTTACAGG+AGG | - | chr5.1:54730843-54730862 | MS.gene43805:intron | 50.0% | |
| ACTAGGACTGTGTCTTGCAG+GGG | + | chr5.1:54731142-54731161 | None:intergenic | 50.0% | |
| AGCGAATCCCCTTGATTCAC+CGG | + | chr5.1:54729096-54729115 | None:intergenic | 50.0% | |
| ATGTCGCACTTCGGAAGACA+AGG | - | chr5.1:54728730-54728749 | MS.gene43805:intron | 50.0% | |
| CCACCTTGATCTATGCTGCA+AGG | + | chr5.1:54730537-54730556 | None:intergenic | 50.0% | |
| CCTTGAGCTCTTTGATCTCG+GGG | + | chr5.1:54730114-54730133 | None:intergenic | 50.0% | |
| CCTTGCAGCATAGATCAAGG+TGG | - | chr5.1:54730534-54730553 | MS.gene43805:intron | 50.0% | |
| GACTAGGACTGTGTCTTGCA+GGG | + | chr5.1:54731143-54731162 | None:intergenic | 50.0% | |
| GAGTAGGTGTCAGAGATGTC+AGG | + | chr5.1:54728760-54728779 | None:intergenic | 50.0% | |
| GCAGAAGCAGATCAGTAGAC+AGG | - | chr5.1:54731020-54731039 | MS.gene43805:CDS | 50.0% | |
| GCATTCACAAAGTCAGCCCA+AGG | + | chr5.1:54730609-54730628 | None:intergenic | 50.0% | |
| GTCACATCATCCCCTCCTTA+AGG | + | chr5.1:54730474-54730493 | None:intergenic | 50.0% | |
| GTTGAGAACGAGGAGAGAGT+AGG | + | chr5.1:54728776-54728795 | None:intergenic | 50.0% | |
| TAGGTGTCAGAGATGTCAGG+AGG | + | chr5.1:54728757-54728776 | None:intergenic | 50.0% | |
| TCATCAGCGGTTGTACCTGA+AGG | + | chr5.1:54728921-54728940 | None:intergenic | 50.0% | |
| ! | AACGTGATAGGTACCGTGGT+GGG | - | chr5.1:54730897-54730916 | MS.gene43805:intron | 50.0% |
| ! | AAGGCTGTTGATAGGCTCGA+TGG | - | chr5.1:54729149-54729168 | MS.gene43805:CDS | 50.0% |
| ! | GAAGGGCTCCTTTTTGGACT+AGG | + | chr5.1:54731159-54731178 | None:intergenic | 50.0% |
| ! | TGATTACAAGCGCCGTGGAA+GGG | - | chr5.1:54730967-54730986 | MS.gene43805:intron | 50.0% |
| ACGGCGCTTGTAATCAGGAC+TGG | + | chr5.1:54730963-54730982 | None:intergenic | 55.0% | |
| CATAATAGCGCCCCCTTCCA+CGG | + | chr5.1:54730982-54731001 | None:intergenic | 55.0% | |
| CCATCACGGCTACGAGTATC+AGG | + | chr5.1:54731240-54731259 | None:intergenic | 55.0% | |
| CCCCGAGATCAAAGAGCTCA+AGG | - | chr5.1:54730111-54730130 | MS.gene43805:intron | 55.0% | |
| CCTGATACTCGTAGCCGTGA+TGG | - | chr5.1:54731237-54731256 | MS.gene43805:CDS | 55.0% | |
| CTTCCACGGCGCTTGTAATC+AGG | + | chr5.1:54730968-54730987 | None:intergenic | 55.0% | |
| GGACTAGGACTGTGTCTTGC+AGG | + | chr5.1:54731144-54731163 | None:intergenic | 55.0% | |
| GGAGAGACACTGCGAGAAGT+AGG | + | chr5.1:54731270-54731289 | None:intergenic | 55.0% | |
| GGTTCCTCTTAGGCCCTGTT+TGG | - | chr5.1:54729197-54729216 | MS.gene43805:CDS | 55.0% | |
| GTATCAGGACTTTCGCGACG+TGG | + | chr5.1:54731225-54731244 | None:intergenic | 55.0% | |
| TGGCACTACGGCTTCTGCTT+CGG | + | chr5.1:54730943-54730962 | None:intergenic | 55.0% | |
| ! | AGTCCTGATTACAAGCGCCG+TGG | - | chr5.1:54730962-54730981 | MS.gene43805:intron | 55.0% |
| ! | ATTACAAGCGCCGTGGAAGG+GGG | - | chr5.1:54730969-54730988 | MS.gene43805:intron | 55.0% |
| ! | CTGATTACAAGCGCCGTGGA+AGG | - | chr5.1:54730966-54730985 | MS.gene43805:intron | 55.0% |
| ! | GAACGTGATAGGTACCGTGG+TGG | - | chr5.1:54730896-54730915 | MS.gene43805:intron | 55.0% |
| ! | GATTACAAGCGCCGTGGAAG+GGG | - | chr5.1:54730968-54730987 | MS.gene43805:intron | 55.0% |
| ACCTTCTCCTGCTGGGACTG+CGG | + | chr5.1:54730139-54730158 | None:intergenic | 60.0% | |
| GAAGGGCTTCGGGAAGCTTC+AGG | + | chr5.1:54731303-54731322 | None:intergenic | 60.0% | |
| GACTGTGTCTTGCAGGGGAG+CGG | + | chr5.1:54731137-54731156 | None:intergenic | 60.0% | |
| GGACTTTCGCGACGTGGACT+AGG | + | chr5.1:54731219-54731238 | None:intergenic | 60.0% | |
| GGCTTCGGGAAGCTTCAGGA+CGG | + | chr5.1:54731299-54731318 | None:intergenic | 60.0% | |
| GGTACGCACCTTCTCCTGCT+GGG | + | chr5.1:54730146-54730165 | None:intergenic | 60.0% | |
| TACGGCTTCTGCTTCGGCGA+CGG | + | chr5.1:54730937-54730956 | None:intergenic | 60.0% | |
| TCTCGCAGTGTCTCTCCACG+AGG | - | chr5.1:54731273-54731292 | MS.gene43805:intron | 60.0% | |
| TGGTACGCACCTTCTCCTGC+TGG | + | chr5.1:54730147-54730166 | None:intergenic | 60.0% | |
| ! | GTACCGTGGTGGGAGAGACA+GGG | - | chr5.1:54730907-54730926 | MS.gene43805:intron | 60.0% |
| !! | TCGCGACGTGGACTAGGACT+AGG | + | chr5.1:54731213-54731232 | None:intergenic | 60.0% |
| GAAGCTTCAGGACGGCCTCG+TGG | + | chr5.1:54731291-54731310 | None:intergenic | 65.0% | |
| GGTCCCTGTCTCTCCCACCA+CGG | + | chr5.1:54730913-54730932 | None:intergenic | 65.0% | |
| ! | GGTACCGTGGTGGGAGAGAC+AGG | - | chr5.1:54730906-54730925 | MS.gene43805:intron | 65.0% |
| CAAGGAGCCGCAGTCCCAGC+AGG | - | chr5.1:54730129-54730148 | MS.gene43805:intron | 70.0% | |
| GCCGCAGTCCCAGCAGGAGA+AGG | - | chr5.1:54730135-54730154 | MS.gene43805:intron | 70.0% | |
| GGCTTCTGCTTCGGCGACGG+TGG | + | chr5.1:54730934-54730953 | None:intergenic | 70.0% | |
| GTCTTGCAGGGGAGCGGCTG+TGG | + | chr5.1:54731131-54731150 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54728730 | 54731455 | 54728730 | ID=MS.gene43805 |
| chr5.1 | mRNA | 54728730 | 54731455 | 54728730 | ID=MS.gene43805.t1;Parent=MS.gene43805 |
| chr5.1 | exon | 54731380 | 54731455 | 54731380 | ID=MS.gene43805.t1.exon1;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54731380 | 54731455 | 54731380 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| chr5.1 | exon | 54731182 | 54731260 | 54731182 | ID=MS.gene43805.t1.exon2;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54731182 | 54731260 | 54731182 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| chr5.1 | exon | 54731015 | 54731094 | 54731015 | ID=MS.gene43805.t1.exon3;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54731015 | 54731094 | 54731015 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| chr5.1 | exon | 54730589 | 54730655 | 54730589 | ID=MS.gene43805.t1.exon4;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54730589 | 54730655 | 54730589 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| chr5.1 | exon | 54730029 | 54730100 | 54730029 | ID=MS.gene43805.t1.exon5;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54730029 | 54730100 | 54730029 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| chr5.1 | exon | 54729144 | 54729356 | 54729144 | ID=MS.gene43805.t1.exon6;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54729144 | 54729356 | 54729144 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| chr5.1 | exon | 54728844 | 54729051 | 54728844 | ID=MS.gene43805.t1.exon7;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54728844 | 54729051 | 54728844 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| chr5.1 | exon | 54728730 | 54728735 | 54728730 | ID=MS.gene43805.t1.exon8;Parent=MS.gene43805.t1 |
| chr5.1 | CDS | 54728730 | 54728735 | 54728730 | ID=cds.MS.gene43805.t1;Parent=MS.gene43805.t1 |
| Gene Sequence |
| Protein sequence |
