Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44259.t1 | KEH20384.1 | 95.1 | 185 | 9 | 0 | 23 | 207 | 4 | 188 | 5.10E-96 | 360.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44259.t1 | Q9SL43 | 62.7 | 185 | 64 | 2 | 26 | 206 | 6 | 189 | 7.8e-61 | 235.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44259.t1 | A0A072TSD3 | 95.1 | 185 | 9 | 0 | 23 | 207 | 4 | 188 | 3.7e-96 | 360.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene44259 | 0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene052965 | MS.gene44259 | 0.853746 | 1.95E-61 | -1.69E-46 |
| MS.gene053006 | MS.gene44259 | -0.807919 | 3.99E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene44259 | -0.817435 | 3.30E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene44259 | 0.820857 | 5.49E-53 | -1.69E-46 |
| MS.gene056272 | MS.gene44259 | -0.808291 | 3.33E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene44259 | -0.812222 | 4.73E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene44259 | -0.804131 | 2.50E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene44259 | -0.804755 | 1.85E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene44259 | 0.837802 | 4.19E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82727 | MS.gene44259 | PPI |
| MS.gene44259 | MS.gene30166 | PPI |
| MS.gene44259 | MS.gene027087 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44259.t1 | MTR_8g076060 | 95.135 | 185 | 9 | 0 | 23 | 207 | 4 | 188 | 3.05e-125 | 351 |
| MS.gene44259.t1 | MTR_8g076060 | 95.109 | 184 | 9 | 0 | 23 | 206 | 4 | 187 | 2.84e-124 | 351 |
| MS.gene44259.t1 | MTR_3g075380 | 42.763 | 152 | 82 | 2 | 59 | 206 | 17 | 167 | 1.68e-33 | 119 |
| MS.gene44259.t1 | MTR_3g051460 | 42.553 | 141 | 76 | 2 | 70 | 206 | 19 | 158 | 1.53e-28 | 105 |
| MS.gene44259.t1 | MTR_3g051460 | 42.553 | 141 | 76 | 2 | 70 | 206 | 36 | 175 | 2.00e-28 | 106 |
| MS.gene44259.t1 | MTR_3g051460 | 42.553 | 141 | 76 | 2 | 70 | 206 | 71 | 210 | 6.68e-28 | 105 |
| MS.gene44259.t1 | MTR_5g092680 | 43.262 | 141 | 75 | 2 | 70 | 206 | 36 | 175 | 1.81e-27 | 103 |
| MS.gene44259.t1 | MTR_5g092680 | 43.262 | 141 | 75 | 2 | 70 | 206 | 98 | 237 | 7.93e-27 | 103 |
| MS.gene44259.t1 | MTR_5g092680 | 43.262 | 141 | 75 | 2 | 70 | 206 | 99 | 238 | 8.09e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44259.t1 | AT2G18030 | 62.903 | 186 | 64 | 2 | 26 | 207 | 6 | 190 | 2.14e-81 | 241 |
| MS.gene44259.t1 | AT2G18030 | 62.703 | 185 | 64 | 2 | 26 | 206 | 6 | 189 | 1.06e-79 | 238 |
| MS.gene44259.t1 | AT5G61640 | 39.241 | 158 | 91 | 2 | 53 | 206 | 46 | 202 | 2.64e-29 | 109 |
| MS.gene44259.t1 | AT5G61640 | 39.241 | 158 | 91 | 2 | 53 | 206 | 19 | 175 | 2.93e-29 | 108 |
| MS.gene44259.t1 | AT5G07460 | 39.506 | 162 | 89 | 3 | 53 | 206 | 31 | 191 | 4.53e-28 | 105 |
| MS.gene44259.t1 | AT4G25130 | 43.262 | 141 | 75 | 2 | 70 | 206 | 92 | 231 | 1.81e-27 | 105 |
| MS.gene44259.t1 | AT5G07470 | 40.972 | 144 | 74 | 3 | 70 | 206 | 36 | 175 | 4.72e-26 | 100 |
Find 69 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCGCTCTCGGAAGTTTC+TGG | 0.121780 | 8.1:-31393503 | MS.gene44259:CDS |
| GGGAACTACTTGATATATTT+TGG | 0.185058 | 8.1:-31392069 | MS.gene44259:CDS |
| GATCCACGGTTAATTAGTTT+TGG | 0.241655 | 8.1:-31392091 | MS.gene44259:CDS |
| ATCACCAAAGCTTCGATATT+CGG | 0.255220 | 8.1:+31393401 | None:intergenic |
| AAGCTTCGATATTCGGGATT+AGG | 0.290129 | 8.1:+31393408 | None:intergenic |
| ACCTGGTGCTCAGGCTCTGC+CGG | 0.306819 | 8.1:+31391758 | None:intergenic |
| CAAACACCTGCCTGGGATCA+TGG | 0.346817 | 8.1:+31392041 | None:intergenic |
| AGGACCACGGTGGGTTATTC+CGG | 0.351538 | 8.1:-31393441 | MS.gene44259:CDS |
| TCACCAAAGCTTCGATATTC+GGG | 0.364093 | 8.1:+31393402 | None:intergenic |
| TGGAGATCCGAAGCTGTGTT+CGG | 0.368348 | 8.1:-31393483 | MS.gene44259:CDS |
| TGATCACGCTGAATCGGTTC+AGG | 0.380894 | 8.1:-31393382 | MS.gene44259:intron |
| AATGGGTAGTGGTAGCTTGC+TGG | 0.381275 | 8.1:-31394166 | MS.gene44259:CDS |
| GCCTTGGCCAAACACCTGCC+TGG | 0.393908 | 8.1:+31392033 | None:intergenic |
| CACAATGCTGCTTCTTGACC+TGG | 0.394204 | 8.1:+31391814 | None:intergenic |
| CATGATCCCAGGCAGGTGTT+TGG | 0.406390 | 8.1:-31392040 | MS.gene44259:CDS |
| GCGGGTTGAGCGACCCGATC+CGG | 0.408200 | 8.1:+31393564 | None:intergenic |
| GTTTGCAAGCGTTGTTGATC+GGG | 0.410660 | 8.1:+31393531 | None:intergenic |
| TGCAAACTGTATCCGATTCC+CGG | 0.410898 | 8.1:-31393583 | MS.gene44259:CDS |
| GGAGAGAATGTAGTTATAGT+TGG | 0.413124 | 8.1:+31393641 | None:intergenic |
| GGAGATCCGAAGCTGTGTTC+GGG | 0.416814 | 8.1:-31393482 | MS.gene44259:CDS |
| CCCGGCAGAGCCTGAGCACC+AGG | 0.421997 | 8.1:-31391759 | MS.gene44259:CDS |
| GGTTTGCAAGCGTTGTTGAT+CGG | 0.428416 | 8.1:+31393530 | None:intergenic |
| CTGTACTGATTACCCACATC+AGG | 0.433767 | 8.1:+31392010 | None:intergenic |
| GGCTTCTGTCAGCAAAGAAC+AGG | 0.442027 | 8.1:-31391843 | MS.gene44259:CDS |
| GAAAGTCAAACCTGGTGCTC+AGG | 0.442914 | 8.1:+31391749 | None:intergenic |
| CCCAGGCAGGTGTTTGGCCA+AGG | 0.443504 | 8.1:-31392034 | MS.gene44259:CDS |
| CTTTGGTGATCACGCTGAAT+CGG | 0.455070 | 8.1:-31393388 | MS.gene44259:CDS |
| GAGCGACCCGATCCGGGAAT+CGG | 0.459972 | 8.1:+31393571 | None:intergenic |
| CTGTATCCGATTCCCGGATC+GGG | 0.464851 | 8.1:-31393577 | MS.gene44259:CDS |
| AATCCCGAATATCGAAGCTT+TGG | 0.468145 | 8.1:-31393405 | MS.gene44259:CDS |
| TGATCGGGTTGTTCGCGGGC+GGG | 0.472390 | 8.1:+31393546 | None:intergenic |
| GTGAATTATGGTGGCGACAG+TGG | 0.481304 | 8.1:-31394196 | None:intergenic |
| CCTTGGCCAAACACCTGCCT+GGG | 0.485328 | 8.1:+31392034 | None:intergenic |
| GTTGTTGATCGGGTTGTTCG+CGG | 0.492191 | 8.1:+31393541 | None:intergenic |
| GCTGTGTTCGGGTGTTTACC+TGG | 0.492300 | 8.1:-31393471 | MS.gene44259:CDS |
| CGGGTTGAGCGACCCGATCC+GGG | 0.494310 | 8.1:+31393565 | None:intergenic |
| ACTGTATCCGATTCCCGGAT+CGG | 0.497099 | 8.1:-31393578 | MS.gene44259:CDS |
| ATGGGTAGTGGTAGCTTGCT+GGG | 0.500409 | 8.1:-31394165 | MS.gene44259:CDS |
| TTGTTGATCGGGTTGTTCGC+GGG | 0.502766 | 8.1:+31393542 | None:intergenic |
| CCTGGTGCTCAGGCTCTGCC+GGG | 0.514034 | 8.1:+31391759 | None:intergenic |
| GGGATTAGGTTTAGATCCAC+CGG | 0.526012 | 8.1:+31393422 | None:intergenic |
| TTTGGTCAAGCCATGATCCC+AGG | 0.532861 | 8.1:-31392051 | MS.gene44259:CDS |
| GCAAAGAACAGGAGCAAACC+AGG | 0.534889 | 8.1:-31391832 | MS.gene44259:CDS |
| TGGAACTGAAGAATCAAGAA+TGG | 0.536435 | 8.1:-31391864 | MS.gene44259:CDS |
| TTGATCGGGTTGTTCGCGGG+CGG | 0.540227 | 8.1:+31393545 | None:intergenic |
| TAAACACCCGAACACAGCTT+CGG | 0.544459 | 8.1:+31393476 | None:intergenic |
| ACTACTCAAATTCTACAACT+TGG | 0.544557 | 8.1:-31391791 | MS.gene44259:CDS |
| GATTACCCACATCAGGGCCT+TGG | 0.551890 | 8.1:+31392017 | None:intergenic |
| CTGATGTGGGTAATCAGTAC+AGG | 0.553146 | 8.1:-31392009 | MS.gene44259:intron |
| ACCGTGGTCCTCACAACACC+AGG | 0.559602 | 8.1:+31393453 | None:intergenic |
| GTCAAGCCATGATCCCAGGC+AGG | 0.571161 | 8.1:-31392047 | MS.gene44259:CDS |
| GTTTGGCCAAGGCCCTGATG+TGG | 0.577488 | 8.1:-31392023 | MS.gene44259:CDS |
| TTTGGCCAAGGCCCTGATGT+GGG | 0.588131 | 8.1:-31392022 | MS.gene44259:CDS |
| CAAACCGCGGTATTCGCTCT+CGG | 0.597580 | 8.1:-31393513 | MS.gene44259:CDS |
| TGAATTATGGTGGCGACAGT+GGG | 0.600950 | 8.1:-31394195 | None:intergenic |
| TGCAATGAAGATGATGAATG+TGG | 0.604055 | 8.1:+31393620 | None:intergenic |
| ACCACGGTGGGTTATTCCGG+TGG | 0.607349 | 8.1:-31393438 | MS.gene44259:CDS |
| GGTGTTTACCTGGTGTTGTG+AGG | 0.638048 | 8.1:-31393461 | MS.gene44259:CDS |
| TGTACTGATTACCCACATCA+GGG | 0.643763 | 8.1:+31392011 | None:intergenic |
| TTAATTTGGAAAGTCAAACC+TGG | 0.647433 | 8.1:+31391741 | None:intergenic |
| ACAACTTGGAACATTTCACC+CGG | 0.654984 | 8.1:-31391777 | MS.gene44259:CDS |
| TCCCCAAAACTAATTAACCG+TGG | 0.658842 | 8.1:+31392088 | None:intergenic |
| TTCAGGTTGAGTATGATCCA+CGG | 0.660705 | 8.1:-31392105 | MS.gene44259:intron |
| ACCTGGTGTTGTGAGGACCA+CGG | 0.679057 | 8.1:-31393454 | MS.gene44259:CDS |
| TCAACAACGCTTGCAAACCG+CGG | 0.689694 | 8.1:-31393526 | MS.gene44259:CDS |
| GGTGTTGTGAGGACCACGGT+GGG | 0.717288 | 8.1:-31393450 | MS.gene44259:CDS |
| ACTTCCGAGAGCGAATACCG+CGG | 0.721213 | 8.1:+31393509 | None:intergenic |
| TCCACCGGAATAACCCACCG+TGG | 0.761833 | 8.1:+31393437 | None:intergenic |
| TGGTGTTGTGAGGACCACGG+TGG | 0.776012 | 8.1:-31393451 | MS.gene44259:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATGAATTAAAAATAATTTA+TGG | + | chr8.1:31391901-31391920 | None:intergenic | 10.0% |
| !!! | ACTTGTAATTATTTTTATTA+AGG | + | chr8.1:31393017-31393036 | None:intergenic | 10.0% |
| !! | ATAATGTAATATAACTTTGT+TGG | - | chr8.1:31393748-31393767 | MS.gene44259:intron | 15.0% |
| !! | TTACATTATAAGATGTAATA+TGG | + | chr8.1:31393737-31393756 | None:intergenic | 15.0% |
| !! | TTTGTTTAAAGACTAAATTT+GGG | + | chr8.1:31391862-31391881 | None:intergenic | 15.0% |
| !!! | AGATCTATTATTTTTGTTAA+TGG | - | chr8.1:31394059-31394078 | MS.gene44259:intron | 15.0% |
| !!! | TTGATGATTTTTTTTTTTCA+TGG | + | chr8.1:31393714-31393733 | None:intergenic | 15.0% |
| !!! | TTTTGTTTAAAGACTAAATT+TGG | + | chr8.1:31391863-31391882 | None:intergenic | 15.0% |
| !! | AAAAATACATACTGCATAAA+TGG | + | chr8.1:31392775-31392794 | None:intergenic | 20.0% |
| !! | AACAAAAATAATAGATCTGT+TGG | + | chr8.1:31394057-31394076 | None:intergenic | 20.0% |
| !! | AGTGTTAAATATAATTAGCT+TGG | + | chr8.1:31393245-31393264 | None:intergenic | 20.0% |
| !! | ATGAATAGTTAAATAAAACC+TGG | + | chr8.1:31393563-31393582 | None:intergenic | 20.0% |
| !! | GTAGTTACAATAAAAATTTC+AGG | + | chr8.1:31391945-31391964 | None:intergenic | 20.0% |
| !! | TGATAAAAACAAAAAGAGAT+TGG | + | chr8.1:31392599-31392618 | None:intergenic | 20.0% |
| !! | TTTAACTATTCATCCAATAT+AGG | - | chr8.1:31393570-31393589 | MS.gene44259:CDS | 20.0% |
| !!! | ACTTTTCAACAAAATAGTTA+GGG | + | chr8.1:31393144-31393163 | None:intergenic | 20.0% |
| !!! | ATTTTTACTAAAGATGCATT+TGG | + | chr8.1:31392947-31392966 | None:intergenic | 20.0% |
| !!! | ATTTTTATTAAGGATGTGTT+CGG | + | chr8.1:31393007-31393026 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGTTACATTCAAC+TGG | - | chr8.1:31393668-31393687 | MS.gene44259:intron | 20.0% |
| !!! | GTTAAGTAATTTGAAATCAT+TGG | - | chr8.1:31393525-31393544 | MS.gene44259:CDS | 20.0% |
| !!! | TTTTATTGATTTTGCCATTA+TGG | - | chr8.1:31393802-31393821 | MS.gene44259:intron | 20.0% |
| ! | ATTGTATTAGCAAACCATAA+TGG | + | chr8.1:31393819-31393838 | None:intergenic | 25.0% |
| ! | TATAGTCCATTTCACAAAAT+TGG | - | chr8.1:31392098-31392117 | MS.gene44259:CDS | 25.0% |
| ! | TCTATAATCGTAAAGAGATT+AGG | - | chr8.1:31392737-31392756 | MS.gene44259:intron | 25.0% |
| !! | AAGAAACCAATTTTGTGAAA+TGG | + | chr8.1:31392107-31392126 | None:intergenic | 25.0% |
| !! | CAATAAAAATTTCAGGTGTA+CGG | + | chr8.1:31391938-31391957 | None:intergenic | 25.0% |
| !! | CACTTTTCAACAAAATAGTT+AGG | + | chr8.1:31393145-31393164 | None:intergenic | 25.0% |
| !! | GCTTTTATTAAAGATGGAAT+GGG | - | chr8.1:31393439-31393458 | MS.gene44259:CDS | 25.0% |
| !! | GTCGTTAGATTTCTTTTATA+TGG | + | chr8.1:31392000-31392019 | None:intergenic | 25.0% |
| !!! | AACATTACTATCACTTTTGA+TGG | + | chr8.1:31391815-31391834 | None:intergenic | 25.0% |
| !!! | CATGTTTTGGGAATAATTTA+TGG | - | chr8.1:31393462-31393481 | MS.gene44259:CDS | 25.0% |
| !!! | GTGAGAAGTTATTATTTTGA+AGG | - | chr8.1:31393087-31393106 | MS.gene44259:intron | 25.0% |
| !!! | TGAAAGTTTCATTTTGGTTT+TGG | + | chr8.1:31392275-31392294 | None:intergenic | 25.0% |
| !!! | TTTCTCTGAAAGTTTCATTT+TGG | + | chr8.1:31392281-31392300 | None:intergenic | 25.0% |
| !!! | TTTTGGGAATAATTTATGGT+TGG | - | chr8.1:31393466-31393485 | MS.gene44259:CDS | 25.0% |
| ACTACTCAAATTCTACAACT+TGG | - | chr8.1:31394152-31394171 | MS.gene44259:CDS | 30.0% | |
| ACTTCTCCAAACATTCATAA+AGG | + | chr8.1:31393338-31393357 | None:intergenic | 30.0% | |
| AGTTAGGGAAAAATTATCGA+AGG | + | chr8.1:31393129-31393148 | None:intergenic | 30.0% | |
| ATGAACACCATATCCATATT+TGG | + | chr8.1:31392916-31392935 | None:intergenic | 30.0% | |
| CCATCTTTAATAAAAGCCTA+GGG | + | chr8.1:31393436-31393455 | None:intergenic | 30.0% | |
| GTATGTGCATTCTTTACTTA+TGG | - | chr8.1:31392653-31392672 | MS.gene44259:intron | 30.0% | |
| GTTCTGACAAAGTTCATAAA+GGG | - | chr8.1:31393296-31393315 | MS.gene44259:intron | 30.0% | |
| TACTAAAGATGCATTTGGAT+TGG | + | chr8.1:31392942-31392961 | None:intergenic | 30.0% | |
| TCAACACAAATTCACATACT+AGG | - | chr8.1:31391965-31391984 | MS.gene44259:intron | 30.0% | |
| TCCATCTTTAATAAAAGCCT+AGG | + | chr8.1:31393437-31393456 | None:intergenic | 30.0% | |
| TGATAAACAAGTTGTCCATA+TGG | - | chr8.1:31392970-31392989 | MS.gene44259:intron | 30.0% | |
| TGTTCTGACAAAGTTCATAA+AGG | - | chr8.1:31393295-31393314 | MS.gene44259:intron | 30.0% | |
| TGTTTCACTGTTACCTATAT+TGG | + | chr8.1:31393586-31393605 | None:intergenic | 30.0% | |
| TTATGAACTTTGTCAGAACA+TGG | + | chr8.1:31393295-31393314 | None:intergenic | 30.0% | |
| ! | GGCTTTTATTAAAGATGGAA+TGG | - | chr8.1:31393438-31393457 | MS.gene44259:CDS | 30.0% |
| ! | GGGAACTACTTGATATATTT+TGG | - | chr8.1:31393874-31393893 | MS.gene44259:intron | 30.0% |
| ! | GTTGAAAAGTGCATCTAAAT+AGG | - | chr8.1:31393154-31393173 | MS.gene44259:intron | 30.0% |
| !! | AAACTTGCTAAAATACACCT+AGG | + | chr8.1:31393189-31393208 | None:intergenic | 30.0% |
| !! | ACTTTGTTGGTTTACTGATT+TGG | - | chr8.1:31393761-31393780 | MS.gene44259:intron | 30.0% |
| !! | AGTCTGAAGAAATTTTGACA+AGG | - | chr8.1:31393034-31393053 | MS.gene44259:intron | 30.0% |
| !! | ATGGTTTGCTAATACAATTC+AGG | - | chr8.1:31393821-31393840 | MS.gene44259:intron | 30.0% |
| !! | TTATAGGATTAGCTTATGAC+AGG | + | chr8.1:31392856-31392875 | None:intergenic | 30.0% |
| !!! | ATCCACGGTTAATTAGTTTT+GGG | - | chr8.1:31393853-31393872 | MS.gene44259:intron | 30.0% |
| !!! | TAGGTGTATTTTAGCAAGTT+TGG | - | chr8.1:31393188-31393207 | MS.gene44259:intron | 30.0% |
| !!! | TCATAAAGGGTGTCATTTTT+AGG | - | chr8.1:31393309-31393328 | MS.gene44259:intron | 30.0% |
| !!! | TTAGCAAGTTTGGTTTTTCT+TGG | - | chr8.1:31393198-31393217 | MS.gene44259:intron | 30.0% |
| ACATAATCAGCACGTTTCAA+CGG | + | chr8.1:31392881-31392900 | None:intergenic | 35.0% | |
| ACTATACGCAATAATCGTTG+TGG | + | chr8.1:31392084-31392103 | None:intergenic | 35.0% | |
| AGGCATCCTTTATGAATGTT+TGG | - | chr8.1:31393329-31393348 | MS.gene44259:intron | 35.0% | |
| ATCACCAAAGCTTCGATATT+CGG | + | chr8.1:31392545-31392564 | None:intergenic | 35.0% | |
| GAAATCATTGGTCCATGAAA+AGG | - | chr8.1:31393537-31393556 | MS.gene44259:CDS | 35.0% | |
| GATTGTTGAATGTGGTAGAT+TGG | + | chr8.1:31392194-31392213 | None:intergenic | 35.0% | |
| GGAGAGAATGTAGTTATAGT+TGG | + | chr8.1:31392305-31392324 | None:intergenic | 35.0% | |
| GGTTAGACCAAATATGGATA+TGG | - | chr8.1:31392906-31392925 | MS.gene44259:intron | 35.0% | |
| TACAAGAAACCAAAACGACT+TGG | - | chr8.1:31392145-31392164 | MS.gene44259:intron | 35.0% | |
| TGCAATGAAGATGATGAATG+TGG | + | chr8.1:31392326-31392345 | None:intergenic | 35.0% | |
| TGGAACTGAAGAATCAAGAA+TGG | - | chr8.1:31394079-31394098 | MS.gene44259:intron | 35.0% | |
| TGGCATGAGATTGAATATGA+AGG | + | chr8.1:31394000-31394019 | None:intergenic | 35.0% | |
| TGGGAATAATTTATGGTTGG+CGG | - | chr8.1:31393469-31393488 | MS.gene44259:CDS | 35.0% | |
| ! | AGAAGTTTTGCATGCTTCTT+AGG | - | chr8.1:31393352-31393371 | MS.gene44259:intron | 35.0% |
| ! | CCCTAGGCTTTTATTAAAGA+TGG | - | chr8.1:31393433-31393452 | MS.gene44259:CDS | 35.0% |
| ! | GAATCAACACCACTACATTT+TGG | + | chr8.1:31393616-31393635 | None:intergenic | 35.0% |
| ! | TAAATAGGCTCTTTTGTCCT+AGG | - | chr8.1:31393169-31393188 | MS.gene44259:intron | 35.0% |
| !! | AAATGTAGTGGTGTTGATTC+TGG | - | chr8.1:31393616-31393635 | MS.gene44259:CDS | 35.0% |
| !! | AATAAAACCTGGCCTTTTCA+TGG | + | chr8.1:31393552-31393571 | None:intergenic | 35.0% |
| !! | CTTGGTCTTGGATTGTATTT+GGG | - | chr8.1:31393216-31393235 | MS.gene44259:intron | 35.0% |
| !! | GATCCACGGTTAATTAGTTT+TGG | - | chr8.1:31393852-31393871 | MS.gene44259:intron | 35.0% |
| !! | TCTTGGTCTTGGATTGTATT+TGG | - | chr8.1:31393215-31393234 | MS.gene44259:intron | 35.0% |
| !!! | AGTTTGGTTTTTCTTGGTCT+TGG | - | chr8.1:31393204-31393223 | MS.gene44259:intron | 35.0% |
| !!! | GGTTTTGTTGTGGTTAAAAG+CGG | + | chr8.1:31392242-31392261 | None:intergenic | 35.0% |
| !!! | TCCACGGTTAATTAGTTTTG+GGG | - | chr8.1:31393854-31393873 | MS.gene44259:intron | 35.0% |
| AAGCTTCGATATTCGGGATT+AGG | + | chr8.1:31392538-31392557 | None:intergenic | 40.0% | |
| AATCCCGAATATCGAAGCTT+TGG | - | chr8.1:31392538-31392557 | MS.gene44259:intron | 40.0% | |
| ACAACTTGGAACATTTCACC+CGG | - | chr8.1:31394166-31394185 | MS.gene44259:CDS | 40.0% | |
| AGGGTTATACATGTCAATCC+AGG | + | chr8.1:31393417-31393436 | None:intergenic | 40.0% | |
| ATATCACAAAGAACTGCAGC+TGG | + | chr8.1:31393976-31393995 | None:intergenic | 40.0% | |
| ATTGAGTAGAGAGCAAGTTG+TGG | - | chr8.1:31392829-31392848 | MS.gene44259:intron | 40.0% | |
| CATAATCAGCACGTTTCAAC+GGG | + | chr8.1:31392880-31392899 | None:intergenic | 40.0% | |
| CATGCTTCACCAAAATGTAG+TGG | - | chr8.1:31393604-31393623 | MS.gene44259:CDS | 40.0% | |
| CTCATCTCAACAAACTCTCA+AGG | + | chr8.1:31392808-31392827 | None:intergenic | 40.0% | |
| GGATTGACATGTATAACCCT+AGG | - | chr8.1:31393417-31393436 | MS.gene44259:CDS | 40.0% | |
| GTAGTTCAGTACTTAGCACT+TGG | + | chr8.1:31394020-31394039 | None:intergenic | 40.0% | |
| TATCGAAGGATCTTGCATTG+AGG | + | chr8.1:31393115-31393134 | None:intergenic | 40.0% | |
| TCACCAAAGCTTCGATATTC+GGG | + | chr8.1:31392544-31392563 | None:intergenic | 40.0% | |
| TCAGGAGGTTAGACCAAATA+TGG | - | chr8.1:31392900-31392919 | MS.gene44259:intron | 40.0% | |
| TCCCCAAAACTAATTAACCG+TGG | + | chr8.1:31393858-31393877 | None:intergenic | 40.0% | |
| TCGGATTGTGAATTGCCATA+TGG | + | chr8.1:31392988-31393007 | None:intergenic | 40.0% | |
| TGCTTCTTAGGAATCTCAGA+AGG | - | chr8.1:31393364-31393383 | MS.gene44259:intron | 40.0% | |
| ! | AAAAGACACTAGTCTAGCCA+TGG | + | chr8.1:31393390-31393409 | None:intergenic | 40.0% |
| ! | AAGATGGAATGGGCATGTTT+TGG | - | chr8.1:31393449-31393468 | MS.gene44259:CDS | 40.0% |
| ! | AGATGGAATGGGCATGTTTT+GGG | - | chr8.1:31393450-31393469 | MS.gene44259:CDS | 40.0% |
| ! | GACTAGTGTCTTTTATCACC+TGG | - | chr8.1:31393396-31393415 | MS.gene44259:CDS | 40.0% |
| ! | GTTACATTCAACTGGTGTTG+TGG | - | chr8.1:31393676-31393695 | MS.gene44259:intron | 40.0% |
| ! | TAAGTGCGGATTGTTGAATG+TGG | + | chr8.1:31392202-31392221 | None:intergenic | 40.0% |
| !! | CTGATTTGGTGAGATGAACT+TGG | - | chr8.1:31393775-31393794 | MS.gene44259:intron | 40.0% |
| !! | TGAAACGTGCTGATTATGTC+AGG | - | chr8.1:31392882-31392901 | MS.gene44259:intron | 40.0% |
| !! | TGTACTGATTACCCACATCA+GGG | + | chr8.1:31393935-31393954 | None:intergenic | 40.0% |
| !! | TTCAGGTTGAGTATGATCCA+CGG | - | chr8.1:31393838-31393857 | MS.gene44259:intron | 40.0% |
| AAAAGCGGAAACTGAGGAGT+GGG | + | chr8.1:31392227-31392246 | None:intergenic | 45.0% | |
| CTGATGTGGGTAATCAGTAC+AGG | - | chr8.1:31393934-31393953 | MS.gene44259:intron | 45.0% | |
| GGGATTAGGTTTAGATCCAC+CGG | + | chr8.1:31392524-31392543 | None:intergenic | 45.0% | |
| GTGGTTAAAAGCGGAAACTG+AGG | + | chr8.1:31392233-31392252 | None:intergenic | 45.0% | |
| TAAAAGCGGAAACTGAGGAG+TGG | + | chr8.1:31392228-31392247 | None:intergenic | 45.0% | |
| TAAACACCCGAACACAGCTT+CGG | + | chr8.1:31392470-31392489 | None:intergenic | 45.0% | |
| TATTCGCTCTCGGAAGTTTC+TGG | - | chr8.1:31392440-31392459 | MS.gene44259:intron | 45.0% | |
| TGCAAACTGTATCCGATTCC+CGG | - | chr8.1:31392360-31392379 | MS.gene44259:intron | 45.0% | |
| TGTGGGTAATCAGTACAGGT+AGG | - | chr8.1:31393938-31393957 | MS.gene44259:intron | 45.0% | |
| TTAGGAATCTCAGAAGGCCA+TGG | - | chr8.1:31393370-31393389 | MS.gene44259:intron | 45.0% | |
| ! | CTTTGGTGATCACGCTGAAT+CGG | - | chr8.1:31392555-31392574 | MS.gene44259:intron | 45.0% |
| ! | GGTTTGCAAGCGTTGTTGAT+CGG | + | chr8.1:31392416-31392435 | None:intergenic | 45.0% |
| ! | GTTTGCAAGCGTTGTTGATC+GGG | + | chr8.1:31392415-31392434 | None:intergenic | 45.0% |
| ! | TGTCAGCTTCCAAGTCGTTT+TGG | + | chr8.1:31392157-31392176 | None:intergenic | 45.0% |
| !! | AACGTGCTGATTATGTCAGG+AGG | - | chr8.1:31392885-31392904 | MS.gene44259:intron | 45.0% |
| !! | CTGTACTGATTACCCACATC+AGG | + | chr8.1:31393936-31393955 | None:intergenic | 45.0% |
| !!! | TGTTGCGTGAGGTTTTGTTG+TGG | + | chr8.1:31392252-31392271 | None:intergenic | 45.0% |
| !!! | TTTGGTTTTGGTGTTGCGTG+AGG | + | chr8.1:31392263-31392282 | None:intergenic | 45.0% |
| ACTGTATCCGATTCCCGGAT+CGG | - | chr8.1:31392365-31392384 | MS.gene44259:intron | 50.0% | |
| CATTGGTCCATGAAAAGGCC+AGG | - | chr8.1:31393542-31393561 | MS.gene44259:CDS | 50.0% | |
| CTGAGGAGTGGGAATAAGTG+CGG | + | chr8.1:31392216-31392235 | None:intergenic | 50.0% | |
| GCAAAGAACAGGAGCAAACC+AGG | - | chr8.1:31394111-31394130 | MS.gene44259:intron | 50.0% | |
| GCGACAGTGGGTGCAAAAAT+GGG | - | chr8.1:31391760-31391779 | MS.gene44259:CDS | 50.0% | |
| GGCTTCTGTCAGCAAAGAAC+AGG | - | chr8.1:31394100-31394119 | MS.gene44259:intron | 50.0% | |
| GGGTAATCAGTACAGGTAGG+AGG | - | chr8.1:31393941-31393960 | MS.gene44259:intron | 50.0% | |
| GTGGGTGCAAAAATGGGTAG+TGG | - | chr8.1:31391766-31391785 | MS.gene44259:CDS | 50.0% | |
| TCAACAACGCTTGCAAACCG+CGG | - | chr8.1:31392417-31392436 | MS.gene44259:intron | 50.0% | |
| TGGAGATCCGAAGCTGTGTT+CGG | - | chr8.1:31392460-31392479 | MS.gene44259:intron | 50.0% | |
| TTTGGTCAAGCCATGATCCC+AGG | - | chr8.1:31393892-31393911 | MS.gene44259:intron | 50.0% | |
| ! | AATGGGTAGTGGTAGCTTGC+TGG | - | chr8.1:31391777-31391796 | MS.gene44259:CDS | 50.0% |
| ! | CACAATGCTGCTTCTTGACC+TGG | + | chr8.1:31394132-31394151 | None:intergenic | 50.0% |
| ! | GCACGTTTCAACGGGCTTAT+AGG | + | chr8.1:31392872-31392891 | None:intergenic | 50.0% |
| ! | GTTGTTGATCGGGTTGTTCG+CGG | + | chr8.1:31392405-31392424 | None:intergenic | 50.0% |
| ! | TGATCACGCTGAATCGGTTC+AGG | - | chr8.1:31392561-31392580 | MS.gene44259:intron | 50.0% |
| ! | TTGTTGATCGGGTTGTTCGC+GGG | + | chr8.1:31392404-31392423 | None:intergenic | 50.0% |
| !! | ATGGGTAGTGGTAGCTTGCT+GGG | - | chr8.1:31391778-31391797 | MS.gene44259:CDS | 50.0% |
| !! | GGTGTTTACCTGGTGTTGTG+AGG | - | chr8.1:31392482-31392501 | MS.gene44259:intron | 50.0% |
| ACTTCCGAGAGCGAATACCG+CGG | + | chr8.1:31392437-31392456 | None:intergenic | 55.0% | |
| ATGGTTGGCGGTTCACGTCT+TGG | - | chr8.1:31393481-31393500 | MS.gene44259:CDS | 55.0% | |
| CAAACACCTGCCTGGGATCA+TGG | + | chr8.1:31393905-31393924 | None:intergenic | 55.0% | |
| CAAACCGCGGTATTCGCTCT+CGG | - | chr8.1:31392430-31392449 | MS.gene44259:intron | 55.0% | |
| CATGATCCCAGGCAGGTGTT+TGG | - | chr8.1:31393903-31393922 | MS.gene44259:intron | 55.0% | |
| CTGTATCCGATTCCCGGATC+GGG | - | chr8.1:31392366-31392385 | MS.gene44259:intron | 55.0% | |
| GATTACCCACATCAGGGCCT+TGG | + | chr8.1:31393929-31393948 | None:intergenic | 55.0% | |
| GCTGTGTTCGGGTGTTTACC+TGG | - | chr8.1:31392472-31392491 | MS.gene44259:intron | 55.0% | |
| GGAGATCCGAAGCTGTGTTC+GGG | - | chr8.1:31392461-31392480 | MS.gene44259:intron | 55.0% | |
| GGCGACAGTGGGTGCAAAAA+TGG | - | chr8.1:31391759-31391778 | MS.gene44259:CDS | 55.0% | |
| TTGGCGGTTCACGTCTTGGA+TGG | - | chr8.1:31393485-31393504 | MS.gene44259:CDS | 55.0% | |
| TTTGGCCAAGGCCCTGATGT+GGG | - | chr8.1:31393921-31393940 | MS.gene44259:intron | 55.0% | |
| !! | ACCTGGTGTTGTGAGGACCA+CGG | - | chr8.1:31392489-31392508 | MS.gene44259:intron | 55.0% |
| !! | AGGACCACGGTGGGTTATTC+CGG | - | chr8.1:31392502-31392521 | MS.gene44259:intron | 55.0% |
| ACCGTGGTCCTCACAACACC+AGG | + | chr8.1:31392493-31392512 | None:intergenic | 60.0% | |
| CCTTGGCCAAACACCTGCCT+GGG | + | chr8.1:31393912-31393931 | None:intergenic | 60.0% | |
| GTCAAGCCATGATCCCAGGC+AGG | - | chr8.1:31393896-31393915 | MS.gene44259:intron | 60.0% | |
| GTTTGGCCAAGGCCCTGATG+TGG | - | chr8.1:31393920-31393939 | MS.gene44259:intron | 60.0% | |
| TCCACCGGAATAACCCACCG+TGG | + | chr8.1:31392509-31392528 | None:intergenic | 60.0% | |
| ! | GGTGTTGTGAGGACCACGGT+GGG | - | chr8.1:31392493-31392512 | MS.gene44259:intron | 60.0% |
| ! | TTGATCGGGTTGTTCGCGGG+CGG | + | chr8.1:31392401-31392420 | None:intergenic | 60.0% |
| !! | ACCACGGTGGGTTATTCCGG+TGG | - | chr8.1:31392505-31392524 | MS.gene44259:intron | 60.0% |
| !! | TGGTGTTGTGAGGACCACGG+TGG | - | chr8.1:31392492-31392511 | MS.gene44259:intron | 60.0% |
| ACCTGGTGCTCAGGCTCTGC+CGG | + | chr8.1:31394188-31394207 | None:intergenic | 65.0% | |
| CCCAGGCAGGTGTTTGGCCA+AGG | - | chr8.1:31393909-31393928 | MS.gene44259:intron | 65.0% | |
| GAGCGACCCGATCCGGGAAT+CGG | + | chr8.1:31392375-31392394 | None:intergenic | 65.0% | |
| GCCTTGGCCAAACACCTGCC+TGG | + | chr8.1:31393913-31393932 | None:intergenic | 65.0% | |
| ! | TGATCGGGTTGTTCGCGGGC+GGG | + | chr8.1:31392400-31392419 | None:intergenic | 65.0% |
| CCTGGTGCTCAGGCTCTGCC+GGG | + | chr8.1:31394187-31394206 | None:intergenic | 70.0% | |
| ! | CGGGTTGAGCGACCCGATCC+GGG | + | chr8.1:31392381-31392400 | None:intergenic | 70.0% |
| ! | GCGGGTTGAGCGACCCGATC+CGG | + | chr8.1:31392382-31392401 | None:intergenic | 70.0% |
| CCCGGCAGAGCCTGAGCACC+AGG | - | chr8.1:31394184-31394203 | MS.gene44259:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 31391754 | 31394211 | 31391754 | ID=MS.gene44259 |
| chr8.1 | mRNA | 31391754 | 31394211 | 31391754 | ID=MS.gene44259.t1;Parent=MS.gene44259 |
| chr8.1 | exon | 31394139 | 31394211 | 31394139 | ID=MS.gene44259.t1.exon1;Parent=MS.gene44259.t1 |
| chr8.1 | CDS | 31394139 | 31394211 | 31394139 | ID=cds.MS.gene44259.t1;Parent=MS.gene44259.t1 |
| chr8.1 | exon | 31393383 | 31393669 | 31393383 | ID=MS.gene44259.t1.exon2;Parent=MS.gene44259.t1 |
| chr8.1 | CDS | 31393383 | 31393669 | 31393383 | ID=cds.MS.gene44259.t1;Parent=MS.gene44259.t1 |
| chr8.1 | exon | 31392010 | 31392122 | 31392010 | ID=MS.gene44259.t1.exon3;Parent=MS.gene44259.t1 |
| chr8.1 | CDS | 31392010 | 31392122 | 31392010 | ID=cds.MS.gene44259.t1;Parent=MS.gene44259.t1 |
| chr8.1 | exon | 31391754 | 31391904 | 31391754 | ID=MS.gene44259.t1.exon4;Parent=MS.gene44259.t1 |
| chr8.1 | CDS | 31391754 | 31391904 | 31391754 | ID=cds.MS.gene44259.t1;Parent=MS.gene44259.t1 |
| Gene Sequence |
| Protein sequence |
