Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44906.t1 | XP_003615646.1 | 84.6 | 117 | 0 | 1 | 1 | 99 | 1 | 117 | 1.00E-45 | 193.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44906.t1 | Q9FMG4 | 69.2 | 117 | 18 | 1 | 1 | 99 | 1 | 117 | 9.1e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44906.t1 | B7FJQ5 | 84.6 | 117 | 0 | 1 | 1 | 99 | 1 | 117 | 7.2e-46 | 193.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040807 | MS.gene44906 | PPI |
| MS.gene026372 | MS.gene44906 | PPI |
| MS.gene74239 | MS.gene44906 | PPI |
| MS.gene44906 | MS.gene90116 | PPI |
| MS.gene44906 | MS.gene047872 | PPI |
| MS.gene061705 | MS.gene44906 | PPI |
| MS.gene44906 | MS.gene011973 | PPI |
| MS.gene44906 | MS.gene061098 | PPI |
| MS.gene046159 | MS.gene44906 | PPI |
| MS.gene44906 | MS.gene90884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44906.t1 | MTR_5g070450 | 91.078 | 269 | 3 | 3 | 1 | 250 | 1 | 267 | 2.96e-156 | 435 |
| MS.gene44906.t1 | MTR_4g094235 | 78.292 | 281 | 29 | 4 | 1 | 250 | 1 | 280 | 3.17e-82 | 248 |
| MS.gene44906.t1 | MTR_4g094235 | 77.660 | 282 | 30 | 5 | 1 | 250 | 1 | 281 | 1.61e-80 | 243 |
| MS.gene44906.t1 | MTR_4g118630 | 42.188 | 64 | 37 | 0 | 12 | 75 | 62 | 125 | 2.83e-12 | 65.9 |
| MS.gene44906.t1 | MTR_1g054675 | 43.750 | 64 | 36 | 0 | 12 | 75 | 57 | 120 | 9.41e-12 | 63.2 |
| MS.gene44906.t1 | MTR_5g070100 | 46.774 | 62 | 33 | 0 | 10 | 71 | 48 | 109 | 2.73e-11 | 63.2 |
| MS.gene44906.t1 | MTR_3g083550 | 38.571 | 70 | 43 | 0 | 6 | 75 | 49 | 118 | 6.13e-11 | 61.2 |
| MS.gene44906.t1 | MTR_3g025880 | 48.276 | 58 | 30 | 0 | 18 | 75 | 64 | 121 | 7.94e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44906.t1 | AT5G64200 | 71.296 | 108 | 13 | 1 | 1 | 90 | 1 | 108 | 2.32e-48 | 162 |
| MS.gene44906.t1 | AT5G64200 | 71.296 | 108 | 13 | 1 | 1 | 90 | 1 | 108 | 2.32e-48 | 162 |
| MS.gene44906.t1 | AT3G13570 | 40.000 | 70 | 42 | 0 | 6 | 75 | 45 | 114 | 1.37e-12 | 66.2 |
| MS.gene44906.t1 | AT1G55310 | 41.429 | 70 | 41 | 0 | 6 | 75 | 44 | 113 | 3.29e-12 | 64.3 |
| MS.gene44906.t1 | AT1G55310 | 41.429 | 70 | 41 | 0 | 6 | 75 | 44 | 113 | 3.29e-12 | 64.3 |
| MS.gene44906.t1 | AT1G55310 | 41.429 | 70 | 41 | 0 | 6 | 75 | 44 | 113 | 3.32e-12 | 65.5 |
| MS.gene44906.t1 | AT3G47120 | 44.444 | 63 | 35 | 0 | 9 | 71 | 47 | 109 | 6.71e-12 | 64.7 |
| MS.gene44906.t1 | AT3G47120 | 44.444 | 63 | 35 | 0 | 9 | 71 | 47 | 109 | 8.05e-12 | 64.3 |
Find 77 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGAGAAATACTCTTCTT+AGG | 0.233254 | 5.2:+59530901 | None:intergenic |
| ACTTACATTCTCTCAGCATT+AGG | 0.269738 | 5.2:+59532511 | None:intergenic |
| GGACTAGGACTGTGTCTTGC+AGG | 0.278267 | 5.2:+59530940 | None:intergenic |
| TTGAATTTCGAGAAGGGCTT+CGG | 0.280382 | 5.2:+59530764 | None:intergenic |
| TCCTTGAGCTCTTTGATCTC+GGG | 0.321129 | 5.2:+59531979 | None:intergenic |
| CTCCTTGAGCTCTTTGATCT+CGG | 0.321782 | 5.2:+59531978 | None:intergenic |
| CCATCACGGCTACGAGTATC+AGG | 0.343759 | 5.2:+59530838 | None:intergenic |
| CTTACATTCTCTCAGCATTA+GGG | 0.365090 | 5.2:+59532512 | None:intergenic |
| ATTACAGAGACAAGGGTTAC+AGG | 0.369191 | 5.2:-59531241 | MS.gene44906:CDS |
| CTTCCACGGCGCTTGTAATC+AGG | 0.371793 | 5.2:+59531116 | None:intergenic |
| ACTGTCCAGTTTGCAAAGTA+TGG | 0.388403 | 5.2:-59532535 | MS.gene44906:CDS |
| GACACAGTCCTAGTCCAAAA+AGG | 0.391806 | 5.2:-59530933 | MS.gene44906:CDS |
| GAAGGGCTTCGGGAAGCTTC+AGG | 0.403495 | 5.2:+59530775 | None:intergenic |
| TGAATTTCGAGAAGGGCTTC+GGG | 0.418855 | 5.2:+59530765 | None:intergenic |
| TAGGGCCATACTTTGCAAAC+TGG | 0.425856 | 5.2:+59532530 | None:intergenic |
| TTTCCTCTGTTCGATAAATA+CGG | 0.428215 | 5.2:-59533142 | MS.gene44906:CDS |
| GGTACCGTGGTGGGAGAGAC+AGG | 0.431627 | 5.2:-59531175 | MS.gene44906:CDS |
| TGGTACGCACCTTCTCCTGC+TGG | 0.455854 | 5.2:+59531947 | None:intergenic |
| GACTAGGACTGTGTCTTGCA+GGG | 0.456750 | 5.2:+59530941 | None:intergenic |
| ATGATAGGTATGAACGTGAT+AGG | 0.468757 | 5.2:-59531196 | MS.gene44906:CDS |
| AAGCTTCAAAGGCTGTTGAT+AGG | 0.469348 | 5.2:-59532946 | MS.gene44906:CDS |
| CAAGGAGCCGCAGTCCCAGC+AGG | 0.474371 | 5.2:-59531962 | MS.gene44906:CDS |
| GGACTTTCGCGACGTGGACT+AGG | 0.475885 | 5.2:+59530859 | None:intergenic |
| GAACAGTACCTTCGATCTCT+AGG | 0.481228 | 5.2:+59533097 | None:intergenic |
| TGGCACTACGGCTTCTGCTT+CGG | 0.482247 | 5.2:+59531141 | None:intergenic |
| GGAGAGACACTGCGAGAAGT+AGG | 0.483410 | 5.2:+59530808 | None:intergenic |
| GAAATACTCTTCTTAGGAGA+AGG | 0.491997 | 5.2:+59530907 | None:intergenic |
| GATTACAAGCGCCGTGGAAG+GGG | 0.498061 | 5.2:-59531113 | MS.gene44906:CDS |
| GCCGCAGTCCCAGCAGGAGA+AGG | 0.501798 | 5.2:-59531956 | MS.gene44906:intron |
| AGCGAATCCCCTCGATTCAC+CGG | 0.502538 | 5.2:+59532994 | None:intergenic |
| CACCGTTTGAATTTCGAGAA+GGG | 0.512918 | 5.2:+59530758 | None:intergenic |
| GTATGCTGATGAAGCTTCAA+AGG | 0.517597 | 5.2:-59532957 | MS.gene44906:CDS |
| CAATTTACAGTCACAAAGGA+AGG | 0.518587 | 5.2:-59532016 | MS.gene44906:intron |
| GACTGTGTCTTGCAGGGGAG+CGG | 0.522469 | 5.2:+59530947 | None:intergenic |
| ACCTTCTCCTGCTGGGACTG+CGG | 0.529187 | 5.2:+59531955 | None:intergenic |
| TGATTACAAGCGCCGTGGAA+GGG | 0.531730 | 5.2:-59531114 | MS.gene44906:CDS |
| GCAGAAGCAGATCAGTAGAC+AGG | 0.539455 | 5.2:-59531061 | MS.gene44906:intron |
| GTCGCAGTAGAAGTTATGAT+AGG | 0.540753 | 5.2:-59531211 | MS.gene44906:CDS |
| CTGATTACAAGCGCCGTGGA+AGG | 0.542451 | 5.2:-59531115 | MS.gene44906:CDS |
| TACGGCTTCTGCTTCGGCGA+CGG | 0.545978 | 5.2:+59531147 | None:intergenic |
| CCTTGAGCTCTTTGATCTCG+GGG | 0.548590 | 5.2:+59531980 | None:intergenic |
| TTTAAGGACCGGTGAATCGA+GGG | 0.550199 | 5.2:-59533002 | MS.gene44906:intron |
| AACAGTACCTTCGATCTCTA+GGG | 0.559185 | 5.2:+59533098 | None:intergenic |
| GGTACGCACCTTCTCCTGCT+GGG | 0.564144 | 5.2:+59531948 | None:intergenic |
| AGCCCTTCTCGAAATTCAAA+CGG | 0.569324 | 5.2:-59530760 | MS.gene44906:CDS |
| CCTGATACTCGTAGCCGTGA+TGG | 0.581591 | 5.2:-59530838 | MS.gene44906:CDS |
| TCACCGTTTGAATTTCGAGA+AGG | 0.584058 | 5.2:+59530757 | None:intergenic |
| ACGGCGCTTGTAATCAGGAC+TGG | 0.588977 | 5.2:+59531121 | None:intergenic |
| AAATACTCTTCTTAGGAGAA+GGG | 0.596251 | 5.2:+59530908 | None:intergenic |
| CGTGGACTAGGACTAGGACT+AGG | 0.600043 | 5.2:+59530871 | None:intergenic |
| CCCCGAGATCAAAGAGCTCA+AGG | 0.604164 | 5.2:-59531980 | MS.gene44906:CDS |
| TTGTCTTCCGAAGTGCGACA+TGG | 0.604324 | 5.2:+59533377 | None:intergenic |
| TGTAATCAGGACTGGCACTA+CGG | 0.607394 | 5.2:+59531129 | None:intergenic |
| ATTACAAGCGCCGTGGAAGG+GGG | 0.608333 | 5.2:-59531112 | MS.gene44906:CDS |
| TCGCGACGTGGACTAGGACT+AGG | 0.608530 | 5.2:+59530865 | None:intergenic |
| CAAACAACCATGTCGCACTT+CGG | 0.609061 | 5.2:-59533384 | None:intergenic |
| TTGCCGTATTTATCGAACAG+AGG | 0.621319 | 5.2:+59533139 | None:intergenic |
| ATGTCGCACTTCGGAAGACA+AGG | 0.623179 | 5.2:-59533375 | MS.gene44906:intron |
| GAAGCTTCAGGACGGCCTCG+TGG | 0.624790 | 5.2:+59530787 | None:intergenic |
| ACTAGGACTGTGTCTTGCAG+GGG | 0.630147 | 5.2:+59530942 | None:intergenic |
| AAGGCTGTTGATAGGCTCGA+TGG | 0.630279 | 5.2:-59532938 | MS.gene44906:intron |
| TCTTCAATTTACAGTCACAA+AGG | 0.639878 | 5.2:-59532020 | MS.gene44906:intron |
| TTAAGGACCGGTGAATCGAG+GGG | 0.645862 | 5.2:-59533001 | MS.gene44906:intron |
| TCACGATGATTACAGAGACA+AGG | 0.647756 | 5.2:-59531249 | MS.gene44906:CDS |
| GTATCAGGACTTTCGCGACG+TGG | 0.650471 | 5.2:+59530853 | None:intergenic |
| AACGTGATAGGTACCGTGGT+GGG | 0.657450 | 5.2:-59531184 | MS.gene44906:CDS |
| ACAGAGACAAGGGTTACAGG+AGG | 0.661184 | 5.2:-59531238 | MS.gene44906:CDS |
| CACGATGATTACAGAGACAA+GGG | 0.663891 | 5.2:-59531248 | MS.gene44906:CDS |
| GGCTTCGGGAAGCTTCAGGA+CGG | 0.665731 | 5.2:+59530779 | None:intergenic |
| AGTCCCTGTCTCTCCCACCA+CGG | 0.675783 | 5.2:+59531171 | None:intergenic |
| GTACCGTGGTGGGAGAGACA+GGG | 0.676128 | 5.2:-59531174 | MS.gene44906:CDS |
| AAGTAGGAGATCTTCCATCA+CGG | 0.676922 | 5.2:+59530824 | None:intergenic |
| AGTCCTGATTACAAGCGCCG+TGG | 0.683842 | 5.2:-59531119 | MS.gene44906:CDS |
| CAGAGGAAATAGATCATCAG+CGG | 0.687879 | 5.2:+59533156 | None:intergenic |
| GAACGTGATAGGTACCGTGG+TGG | 0.702747 | 5.2:-59531185 | MS.gene44906:CDS |
| TCTCGCAGTGTCTCTCCACG+AGG | 0.716772 | 5.2:-59530802 | MS.gene44906:CDS |
| TATGAACGTGATAGGTACCG+TGG | 0.720809 | 5.2:-59531188 | MS.gene44906:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTAATTGATAAATAAAA+AGG | + | chr5.2:59530963-59530982 | None:intergenic | 10.0% |
| !! | GATTAATTGATAAATAAAAA+GGG | + | chr5.2:59530962-59530981 | None:intergenic | 10.0% |
| !!! | ATTTCAATTTTTATTGTATA+TGG | - | chr5.2:59531409-59531428 | MS.gene44906:intron | 10.0% |
| !!! | TTTGAAATAATTATTTTTTC+AGG | - | chr5.2:59531434-59531453 | MS.gene44906:intron | 10.0% |
| !! | ACAATAAAAATTGAAATGAA+GGG | + | chr5.2:59531406-59531425 | None:intergenic | 15.0% |
| !! | TACAATAAAAATTGAAATGA+AGG | + | chr5.2:59531407-59531426 | None:intergenic | 15.0% |
| !! | TGACATAAAGTTATATTATT+TGG | - | chr5.2:59531221-59531240 | MS.gene44906:CDS | 15.0% |
| !!! | GAATTTTTCTATTGTTTTTA+AGG | - | chr5.2:59530999-59531018 | MS.gene44906:intron | 15.0% |
| !!! | TTCATTTTGAAGTTTTTTTA+TGG | - | chr5.2:59532648-59532667 | MS.gene44906:intron | 15.0% |
| !!! | TTTTTTAGTTTCTGTTATAA+TGG | - | chr5.2:59531540-59531559 | MS.gene44906:intron | 15.0% |
| !! | ACCATCATAATTATTCTTAT+TGG | - | chr5.2:59533021-59533040 | MS.gene44906:intron | 20.0% |
| !! | ATTTCGGCTATTAAATTAAA+TGG | + | chr5.2:59532317-59532336 | None:intergenic | 20.0% |
| !! | TCCAATAAGAATAATTATGA+TGG | + | chr5.2:59533025-59533044 | None:intergenic | 20.0% |
| !! | TTATCTGTTATTGTAATTGA+CGG | - | chr5.2:59532573-59532592 | MS.gene44906:intron | 20.0% |
| !!! | AATTATTTTTTCAGGAAGAA+TGG | - | chr5.2:59531442-59531461 | MS.gene44906:intron | 20.0% |
| !!! | CAATTCTATTTACATTTTTC+AGG | - | chr5.2:59533370-59533389 | MS.gene44906:intron | 20.0% |
| !!! | TTTCTTCGTTTTGTTATTAT+TGG | - | chr5.2:59531106-59531125 | MS.gene44906:CDS | 20.0% |
| ! | AAACTTCAAAATGAACACAT+AGG | + | chr5.2:59532643-59532662 | None:intergenic | 25.0% |
| ! | AACTGTAAACAACTGTATTT+CGG | + | chr5.2:59532333-59532352 | None:intergenic | 25.0% |
| ! | ACAACAGTATATAGAAAATC+AGG | + | chr5.2:59531595-59531614 | None:intergenic | 25.0% |
| ! | ATATCACATTCAACTTATCA+CGG | + | chr5.2:59532246-59532265 | None:intergenic | 25.0% |
| ! | ATTCAATTGTATACTCATAG+TGG | - | chr5.2:59531900-59531919 | MS.gene44906:intron | 25.0% |
| ! | GATGTATGTAATGTTATTCT+TGG | - | chr5.2:59533281-59533300 | MS.gene44906:intron | 25.0% |
| ! | TCGAATAAGACAATACAAAT+AGG | - | chr5.2:59531380-59531399 | MS.gene44906:intron | 25.0% |
| ! | TTAACATGCTTAAACTGAAA+AGG | + | chr5.2:59532422-59532441 | None:intergenic | 25.0% |
| ! | TTAGCATTCAAAATATCTAC+TGG | - | chr5.2:59532599-59532618 | MS.gene44906:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr5.2:59531671-59531690 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr5.2:59531670-59531689 | None:intergenic | 25.0% |
| !!! | AAGTCATTTTCGATATCAAA+AGG | - | chr5.2:59533322-59533341 | MS.gene44906:intron | 25.0% |
| !!! | CATTTTAATTTTGCACCTTA+AGG | - | chr5.2:59532382-59532401 | MS.gene44906:intron | 25.0% |
| !!! | TTTCTATTGTTTTTAAGGAC+CGG | - | chr5.2:59531004-59531023 | MS.gene44906:intron | 25.0% |
| !!! | TTTGTTTTTATACTACAAGC+AGG | - | chr5.2:59532195-59532214 | MS.gene44906:intron | 25.0% |
| AAATACTCTTCTTAGGAGAA+GGG | + | chr5.2:59533112-59533131 | None:intergenic | 30.0% | |
| AACAAAAAGCAATGCCAAAA+TGG | + | chr5.2:59532181-59532200 | None:intergenic | 30.0% | |
| AAGCTATTGTGTTCAAACAT+AGG | + | chr5.2:59531869-59531888 | None:intergenic | 30.0% | |
| AATAATGTCGCAAATGCTTA+TGG | - | chr5.2:59531807-59531826 | MS.gene44906:intron | 30.0% | |
| AGCTATTGTGTTCAAACATA+GGG | + | chr5.2:59531868-59531887 | None:intergenic | 30.0% | |
| ATCAAATTCAATCAACAACG+TGG | + | chr5.2:59532709-59532728 | None:intergenic | 30.0% | |
| GTAGAAAGTCAAAACTGAAA+AGG | + | chr5.2:59533003-59533022 | None:intergenic | 30.0% | |
| TAATCTATTCAACAAGGTCA+AGG | + | chr5.2:59531644-59531663 | None:intergenic | 30.0% | |
| TATCACATTCAACTTATCAC+GGG | + | chr5.2:59532245-59532264 | None:intergenic | 30.0% | |
| TCTTCAATTTACAGTCACAA+AGG | - | chr5.2:59531997-59532016 | MS.gene44906:CDS | 30.0% | |
| TGACCTTGTTGAATAGATTA+TGG | - | chr5.2:59531644-59531663 | MS.gene44906:intron | 30.0% | |
| TGTGGAGAATAACAAACAAA+AGG | + | chr5.2:59533049-59533068 | None:intergenic | 30.0% | |
| TTAGGAGAAATACTCTTCTT+AGG | + | chr5.2:59533119-59533138 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCGATAAATA+CGG | - | chr5.2:59530875-59530894 | MS.gene44906:CDS | 30.0% | |
| ! | AAGCATTTGCGACATTATTT+TGG | + | chr5.2:59531806-59531825 | None:intergenic | 30.0% |
| ! | AATAAGGTGTTATCCAAACA+GGG | + | chr5.2:59531143-59531162 | None:intergenic | 30.0% |
| ! | AATGTATTTCTTTTACGCAG+TGG | - | chr5.2:59532678-59532697 | MS.gene44906:intron | 30.0% |
| ! | ACAAACAAAAGTACAGCATT+GGG | + | chr5.2:59532510-59532529 | None:intergenic | 30.0% |
| ! | TAATAAGGTGTTATCCAAAC+AGG | + | chr5.2:59531144-59531163 | None:intergenic | 30.0% |
| ! | TTAATTTTGCACCTTAAGGA+GGG | - | chr5.2:59532386-59532405 | MS.gene44906:intron | 30.0% |
| !! | AGCATGTTAACTTGTCTAAA+TGG | - | chr5.2:59532432-59532451 | MS.gene44906:intron | 30.0% |
| !! | TGTTATTATTGGTTCCTCTT+AGG | - | chr5.2:59531117-59531136 | MS.gene44906:CDS | 30.0% |
| !! | TTGTCTTTGTTATTGTCCTT+GGG | - | chr5.2:59532526-59532545 | MS.gene44906:CDS | 30.0% |
| !! | TTTAATTTTGCACCTTAAGG+AGG | - | chr5.2:59532385-59532404 | MS.gene44906:intron | 30.0% |
| !! | TTTGTCTTTGTTATTGTCCT+TGG | - | chr5.2:59532525-59532544 | MS.gene44906:CDS | 30.0% |
| !!! | GAGCTTTGAAATTACCATTT+TGG | - | chr5.2:59532164-59532183 | MS.gene44906:intron | 30.0% |
| !!! | TTAGCCTTTGTTTTTATGCT+TGG | - | chr5.2:59532286-59532305 | MS.gene44906:intron | 30.0% |
| AATAAAAAGAACAAGCCGTG+AGG | + | chr5.2:59531947-59531966 | None:intergenic | 35.0% | |
| ACTAATGTCCAACTGTTTGT+AGG | - | chr5.2:59532743-59532762 | MS.gene44906:intron | 35.0% | |
| ACTTACATTCTCTCAGCATT+AGG | + | chr5.2:59531509-59531528 | None:intergenic | 35.0% | |
| ATGATAGGTATGAACGTGAT+AGG | - | chr5.2:59532821-59532840 | MS.gene44906:intron | 35.0% | |
| CAATTTACAGTCACAAAGGA+AGG | - | chr5.2:59532001-59532020 | MS.gene44906:CDS | 35.0% | |
| CACTCCAAGCATAAAAACAA+AGG | + | chr5.2:59532293-59532312 | None:intergenic | 35.0% | |
| CTGAAGGAAACAACAATGTA+TGG | + | chr5.2:59530835-59530854 | None:intergenic | 35.0% | |
| CTTACATTCTCTCAGCATTA+GGG | + | chr5.2:59531508-59531527 | None:intergenic | 35.0% | |
| GAAATACTCTTCTTAGGAGA+AGG | + | chr5.2:59533113-59533132 | None:intergenic | 35.0% | |
| GGTCTTCATTCATTGATACT+TGG | - | chr5.2:59532977-59532996 | MS.gene44906:CDS | 35.0% | |
| TATTGCGTAAGCTGCTAATA+AGG | + | chr5.2:59531159-59531178 | None:intergenic | 35.0% | |
| TTAGTGTCTTCTATTGTGTC+TGG | - | chr5.2:59532140-59532159 | MS.gene44906:intron | 35.0% | |
| ! | ATGTCATAAGCTGTTTCAGA+CGG | - | chr5.2:59531316-59531335 | MS.gene44906:intron | 35.0% |
| ! | GACAAACAAAAGTACAGCAT+TGG | + | chr5.2:59532511-59532530 | None:intergenic | 35.0% |
| ! | TAATTTTGCACCTTAAGGAG+GGG | - | chr5.2:59532387-59532406 | MS.gene44906:intron | 35.0% |
| !! | CATACATTGTTGTTTCCTTC+AGG | - | chr5.2:59530833-59530852 | MS.gene44906:CDS | 35.0% |
| !! | TTTTCAGGAAGAATGGTTGA+TGG | - | chr5.2:59531449-59531468 | MS.gene44906:intron | 35.0% |
| !!! | GCTGGTTTTTATTTTCCTCA+CGG | - | chr5.2:59531929-59531948 | MS.gene44906:intron | 35.0% |
| !!! | GCTGTTTTTATTAGCTATCC+TGG | - | chr5.2:59531745-59531764 | MS.gene44906:intron | 35.0% |
| AACAGTACCTTCGATCTCTA+GGG | + | chr5.2:59530922-59530941 | None:intergenic | 40.0% | |
| AAGCTTCAAAGGCTGTTGAT+AGG | - | chr5.2:59531071-59531090 | MS.gene44906:CDS | 40.0% | |
| AAGTAGGAGATCTTCCATCA+CGG | + | chr5.2:59533196-59533215 | None:intergenic | 40.0% | |
| ACAAGCAGGATGATATCTGT+TGG | - | chr5.2:59532209-59532228 | MS.gene44906:intron | 40.0% | |
| ACAGCAAGGACATTAAGAAG+TGG | + | chr5.2:59532093-59532112 | None:intergenic | 40.0% | |
| ACTGTCCAGTTTGCAAAGTA+TGG | - | chr5.2:59531482-59531501 | MS.gene44906:intron | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+CGG | + | chr5.2:59530719-59530738 | None:intergenic | 40.0% | |
| AGCCCTTCTCGAAATTCAAA+CGG | - | chr5.2:59533257-59533276 | MS.gene44906:intron | 40.0% | |
| ATTACAGAGACAAGGGTTAC+AGG | - | chr5.2:59532776-59532795 | MS.gene44906:intron | 40.0% | |
| ATTCCTTGCAGCATAGATCA+AGG | - | chr5.2:59532457-59532476 | MS.gene44906:intron | 40.0% | |
| CACCGTTTGAATTTCGAGAA+GGG | + | chr5.2:59533262-59533281 | None:intergenic | 40.0% | |
| CACGATGATTACAGAGACAA+GGG | - | chr5.2:59532769-59532788 | MS.gene44906:intron | 40.0% | |
| CAGAGGAAATAGATCATCAG+CGG | + | chr5.2:59530864-59530883 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | + | chr5.2:59531766-59531785 | None:intergenic | 40.0% | |
| GAATAGATTATGGCCCTGTT+TGG | - | chr5.2:59531654-59531673 | MS.gene44906:intron | 40.0% | |
| GGGCCATAATCTATTCAACA+AGG | + | chr5.2:59531650-59531669 | None:intergenic | 40.0% | |
| GTATGCTGATGAAGCTTCAA+AGG | - | chr5.2:59531060-59531079 | MS.gene44906:intron | 40.0% | |
| GTCGCAGTAGAAGTTATGAT+AGG | - | chr5.2:59532806-59532825 | MS.gene44906:intron | 40.0% | |
| TCACCGTTTGAATTTCGAGA+AGG | + | chr5.2:59533263-59533282 | None:intergenic | 40.0% | |
| TCACGATGATTACAGAGACA+AGG | - | chr5.2:59532768-59532787 | MS.gene44906:intron | 40.0% | |
| TTGAATTTCGAGAAGGGCTT+CGG | + | chr5.2:59533256-59533275 | None:intergenic | 40.0% | |
| TTGCCGTATTTATCGAACAG+AGG | + | chr5.2:59530881-59530900 | None:intergenic | 40.0% | |
| ! | CTAGGACTAGGACTTTTCTT+AGG | + | chr5.2:59533137-59533156 | None:intergenic | 40.0% |
| ! | TTTTCATCCCTAGAGATCGA+AGG | - | chr5.2:59530912-59530931 | MS.gene44906:CDS | 40.0% |
| !! | GTTGTTTTCATGTGCTAGCT+TGG | - | chr5.2:59531256-59531275 | MS.gene44906:intron | 40.0% |
| CTCCTTGAGCTCTTTGATCT+CGG | + | chr5.2:59532042-59532061 | None:intergenic | 45.0% | |
| CTTCTACTACCACAACACTC+TGG | + | chr5.2:59532118-59532137 | None:intergenic | 45.0% | |
| GAACAGTACCTTCGATCTCT+AGG | + | chr5.2:59530923-59530942 | None:intergenic | 45.0% | |
| GACACAGTCCTAGTCCAAAA+AGG | - | chr5.2:59533084-59533103 | MS.gene44906:intron | 45.0% | |
| GGAAAGTGATGTTGAGAACG+AGG | + | chr5.2:59530698-59530717 | None:intergenic | 45.0% | |
| TAGCTATCCTGGAGAGCTTA+TGG | - | chr5.2:59531756-59531775 | MS.gene44906:intron | 45.0% | |
| TAGGGCCATACTTTGCAAAC+TGG | + | chr5.2:59531490-59531509 | None:intergenic | 45.0% | |
| TCCTTGAGCTCTTTGATCTC+GGG | + | chr5.2:59532041-59532060 | None:intergenic | 45.0% | |
| TCGTGATGCCTACAAACAGT+TGG | + | chr5.2:59532754-59532773 | None:intergenic | 45.0% | |
| TGAATTTCGAGAAGGGCTTC+GGG | + | chr5.2:59533255-59533274 | None:intergenic | 45.0% | |
| TTATCCAAACAGGGCCTAAG+AGG | + | chr5.2:59531134-59531153 | None:intergenic | 45.0% | |
| TTGGGTCTCTGCTATAAGGA+TGG | + | chr5.2:59532492-59532511 | None:intergenic | 45.0% | |
| TTTAAGGACCGGTGAATCGA+GGG | - | chr5.2:59531015-59531034 | MS.gene44906:intron | 45.0% | |
| ! | ACAACACTCTGGAAACAGCA+AGG | + | chr5.2:59532107-59532126 | None:intergenic | 45.0% |
| ! | AGCATTGGGTCTCTGCTATA+AGG | + | chr5.2:59532496-59532515 | None:intergenic | 45.0% |
| ! | TATGAACGTGATAGGTACCG+TGG | - | chr5.2:59532829-59532848 | MS.gene44906:intron | 45.0% |
| ! | TGTAATCAGGACTGGCACTA+CGG | + | chr5.2:59532891-59532910 | None:intergenic | 45.0% |
| ! | TTAGGAGAAGGGCTCCTTTT+TGG | + | chr5.2:59533101-59533120 | None:intergenic | 45.0% |
| !! | TACTCATAGTGGATGCTAGC+TGG | - | chr5.2:59531911-59531930 | MS.gene44906:intron | 45.0% |
| !! | TTGCTGTTTCCAGAGTGTTG+TGG | - | chr5.2:59532106-59532125 | MS.gene44906:intron | 45.0% |
| !! | TTTTAAGGACCGGTGAATCG+AGG | - | chr5.2:59531014-59531033 | MS.gene44906:intron | 45.0% |
| ACAGAGACAAGGGTTACAGG+AGG | - | chr5.2:59532779-59532798 | MS.gene44906:intron | 50.0% | |
| ACTAGGACTGTGTCTTGCAG+GGG | + | chr5.2:59533078-59533097 | None:intergenic | 50.0% | |
| ATGTCGCACTTCGGAAGACA+AGG | - | chr5.2:59530642-59530661 | MS.gene44906:intron | 50.0% | |
| CCACCTTGATCTATGCTGCA+AGG | + | chr5.2:59532463-59532482 | None:intergenic | 50.0% | |
| CCTTGAGCTCTTTGATCTCG+GGG | + | chr5.2:59532040-59532059 | None:intergenic | 50.0% | |
| CCTTGCAGCATAGATCAAGG+TGG | - | chr5.2:59532460-59532479 | MS.gene44906:intron | 50.0% | |
| GACTAGGACTGTGTCTTGCA+GGG | + | chr5.2:59533079-59533098 | None:intergenic | 50.0% | |
| GCAGAAGCAGATCAGTAGAC+AGG | - | chr5.2:59532956-59532975 | MS.gene44906:CDS | 50.0% | |
| GCATTCACAAAGTCAGCCCA+AGG | + | chr5.2:59532545-59532564 | None:intergenic | 50.0% | |
| GTCACATCATCCCCTCCTTA+AGG | + | chr5.2:59532400-59532419 | None:intergenic | 50.0% | |
| GTTGAGAACGAGGAGAGAGT+AGG | + | chr5.2:59530688-59530707 | None:intergenic | 50.0% | |
| TCATCAGCGGTTGTACCTGA+AGG | + | chr5.2:59530851-59530870 | None:intergenic | 50.0% | |
| TTAAGGACCGGTGAATCGAG+GGG | - | chr5.2:59531016-59531035 | MS.gene44906:intron | 50.0% | |
| ! | AACGTGATAGGTACCGTGGT+GGG | - | chr5.2:59532833-59532852 | MS.gene44906:intron | 50.0% |
| ! | AAGGCTGTTGATAGGCTCGA+TGG | - | chr5.2:59531079-59531098 | MS.gene44906:CDS | 50.0% |
| ! | AGCTGTTTCAGACGGTCTCT+TGG | - | chr5.2:59531324-59531343 | MS.gene44906:intron | 50.0% |
| ! | GAAGGGCTCCTTTTTGGACT+AGG | + | chr5.2:59533095-59533114 | None:intergenic | 50.0% |
| ! | TGATTACAAGCGCCGTGGAA+GGG | - | chr5.2:59532903-59532922 | MS.gene44906:intron | 50.0% |
| ACGGCGCTTGTAATCAGGAC+TGG | + | chr5.2:59532899-59532918 | None:intergenic | 55.0% | |
| AGCGAATCCCCTCGATTCAC+CGG | + | chr5.2:59531026-59531045 | None:intergenic | 55.0% | |
| CCATCACGGCTACGAGTATC+AGG | + | chr5.2:59533182-59533201 | None:intergenic | 55.0% | |
| CCCCGAGATCAAAGAGCTCA+AGG | - | chr5.2:59532037-59532056 | MS.gene44906:intron | 55.0% | |
| CCTGATACTCGTAGCCGTGA+TGG | - | chr5.2:59533179-59533198 | MS.gene44906:intron | 55.0% | |
| CTTCCACGGCGCTTGTAATC+AGG | + | chr5.2:59532904-59532923 | None:intergenic | 55.0% | |
| GAGTAGGTGTCAGCGATGTC+AGG | + | chr5.2:59530672-59530691 | None:intergenic | 55.0% | |
| GGACTAGGACTGTGTCTTGC+AGG | + | chr5.2:59533080-59533099 | None:intergenic | 55.0% | |
| GGAGAGACACTGCGAGAAGT+AGG | + | chr5.2:59533212-59533231 | None:intergenic | 55.0% | |
| GGTTCCTCTTAGGCCCTGTT+TGG | - | chr5.2:59531127-59531146 | MS.gene44906:CDS | 55.0% | |
| GTATCAGGACTTTCGCGACG+TGG | + | chr5.2:59533167-59533186 | None:intergenic | 55.0% | |
| TAGGTGTCAGCGATGTCAGG+AGG | + | chr5.2:59530669-59530688 | None:intergenic | 55.0% | |
| TGGCACTACGGCTTCTGCTT+CGG | + | chr5.2:59532879-59532898 | None:intergenic | 55.0% | |
| ! | AGTCCTGATTACAAGCGCCG+TGG | - | chr5.2:59532898-59532917 | MS.gene44906:intron | 55.0% |
| ! | ATTACAAGCGCCGTGGAAGG+GGG | - | chr5.2:59532905-59532924 | MS.gene44906:intron | 55.0% |
| ! | CTGATTACAAGCGCCGTGGA+AGG | - | chr5.2:59532902-59532921 | MS.gene44906:intron | 55.0% |
| ! | GAACGTGATAGGTACCGTGG+TGG | - | chr5.2:59532832-59532851 | MS.gene44906:intron | 55.0% |
| ! | GATTACAAGCGCCGTGGAAG+GGG | - | chr5.2:59532904-59532923 | MS.gene44906:intron | 55.0% |
| !! | CGTGGACTAGGACTAGGACT+AGG | + | chr5.2:59533149-59533168 | None:intergenic | 55.0% |
| ACCTTCTCCTGCTGGGACTG+CGG | + | chr5.2:59532065-59532084 | None:intergenic | 60.0% | |
| AGTCCCTGTCTCTCCCACCA+CGG | + | chr5.2:59532849-59532868 | None:intergenic | 60.0% | |
| CATCATAGCGCCCCCTTCCA+CGG | + | chr5.2:59532918-59532937 | None:intergenic | 60.0% | |
| GAAGGGCTTCGGGAAGCTTC+AGG | + | chr5.2:59533245-59533264 | None:intergenic | 60.0% | |
| GACTGTGTCTTGCAGGGGAG+CGG | + | chr5.2:59533073-59533092 | None:intergenic | 60.0% | |
| GGACTTTCGCGACGTGGACT+AGG | + | chr5.2:59533161-59533180 | None:intergenic | 60.0% | |
| GGCTTCGGGAAGCTTCAGGA+CGG | + | chr5.2:59533241-59533260 | None:intergenic | 60.0% | |
| GGTACGCACCTTCTCCTGCT+GGG | + | chr5.2:59532072-59532091 | None:intergenic | 60.0% | |
| TACGGCTTCTGCTTCGGCGA+CGG | + | chr5.2:59532873-59532892 | None:intergenic | 60.0% | |
| TCTCGCAGTGTCTCTCCACG+AGG | - | chr5.2:59533215-59533234 | MS.gene44906:intron | 60.0% | |
| TGGTACGCACCTTCTCCTGC+TGG | + | chr5.2:59532073-59532092 | None:intergenic | 60.0% | |
| ! | GTACCGTGGTGGGAGAGACA+GGG | - | chr5.2:59532843-59532862 | MS.gene44906:intron | 60.0% |
| !! | TCGCGACGTGGACTAGGACT+AGG | + | chr5.2:59533155-59533174 | None:intergenic | 60.0% |
| GAAGCTTCAGGACGGCCTCG+TGG | + | chr5.2:59533233-59533252 | None:intergenic | 65.0% | |
| ! | GGTACCGTGGTGGGAGAGAC+AGG | - | chr5.2:59532842-59532861 | MS.gene44906:intron | 65.0% |
| CAAGGAGCCGCAGTCCCAGC+AGG | - | chr5.2:59532055-59532074 | MS.gene44906:intron | 70.0% | |
| GCCGCAGTCCCAGCAGGAGA+AGG | - | chr5.2:59532061-59532080 | MS.gene44906:intron | 70.0% | |
| GTCTTGCAGGGGAGCGGCTG+TGG | + | chr5.2:59533067-59533086 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 59530642 | 59533397 | 59530642 | ID=MS.gene44906 |
| chr5.2 | mRNA | 59530642 | 59533397 | 59530642 | ID=MS.gene44906.t1;Parent=MS.gene44906 |
| chr5.2 | exon | 59533376 | 59533397 | 59533376 | ID=MS.gene44906.t1.exon1;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59533376 | 59533397 | 59533376 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| chr5.2 | exon | 59533106 | 59533184 | 59533106 | ID=MS.gene44906.t1.exon2;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59533106 | 59533184 | 59533106 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| chr5.2 | exon | 59532939 | 59533018 | 59532939 | ID=MS.gene44906.t1.exon3;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59532939 | 59533018 | 59532939 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| chr5.2 | exon | 59532517 | 59532583 | 59532517 | ID=MS.gene44906.t1.exon4;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59532517 | 59532583 | 59532517 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| chr5.2 | exon | 59531957 | 59532028 | 59531957 | ID=MS.gene44906.t1.exon5;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59531957 | 59532028 | 59531957 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| chr5.2 | exon | 59531062 | 59531274 | 59531062 | ID=MS.gene44906.t1.exon6;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59531062 | 59531274 | 59531062 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| chr5.2 | exon | 59530756 | 59530969 | 59530756 | ID=MS.gene44906.t1.exon7;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59530756 | 59530969 | 59530756 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| chr5.2 | exon | 59530642 | 59530647 | 59530642 | ID=MS.gene44906.t1.exon8;Parent=MS.gene44906.t1 |
| chr5.2 | CDS | 59530642 | 59530647 | 59530642 | ID=cds.MS.gene44906.t1;Parent=MS.gene44906.t1 |
| Gene Sequence |
| Protein sequence |
