Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45012.t1 | KEH32297.1 | 94.5 | 183 | 10 | 0 | 22 | 204 | 8 | 190 | 3.20E-90 | 341.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45012.t1 | Q93ZE5 | 74.4 | 180 | 46 | 0 | 22 | 201 | 7 | 186 | 3.3e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45012.t1 | A0A072URI4 | 94.5 | 183 | 10 | 0 | 22 | 204 | 8 | 190 | 2.3e-90 | 341.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45012 | MS.gene066362 | PPI |
| MS.gene035366 | MS.gene45012 | PPI |
| MS.gene45012 | MS.gene77824 | PPI |
| MS.gene041603 | MS.gene45012 | PPI |
| MS.gene45012 | MS.gene041601 | PPI |
| MS.gene071503 | MS.gene45012 | PPI |
| MS.gene071505 | MS.gene45012 | PPI |
| MS.gene035368 | MS.gene45012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45012.t1 | MTR_4g120230 | 94.536 | 183 | 10 | 0 | 22 | 204 | 8 | 190 | 6.95e-126 | 356 |
| MS.gene45012.t1 | MTR_4g120230 | 96.111 | 180 | 7 | 0 | 22 | 201 | 8 | 187 | 8.78e-125 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45012.t1 | AT4G15940 | 73.889 | 180 | 46 | 1 | 22 | 201 | 7 | 185 | 4.03e-95 | 279 |
| MS.gene45012.t1 | AT3G16700 | 72.222 | 180 | 50 | 0 | 22 | 201 | 7 | 186 | 2.26e-92 | 272 |
| MS.gene45012.t1 | AT3G16700 | 71.127 | 142 | 41 | 0 | 22 | 163 | 7 | 148 | 6.79e-70 | 213 |
| MS.gene45012.t1 | AT3G16700 | 71.569 | 102 | 29 | 0 | 22 | 123 | 7 | 108 | 3.73e-47 | 154 |
| MS.gene45012.t1 | AT3G16700 | 71.569 | 102 | 29 | 0 | 22 | 123 | 7 | 108 | 3.73e-47 | 154 |
Find 53 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATAATTCTAGATTATC+AGG | 0.182113 | 6.3:+68659711 | None:intergenic |
| TTTCTTACAATAGGACTAAT+TGG | 0.207772 | 6.3:+68660345 | None:intergenic |
| ACCCTGATAATCTAGAATTA+TGG | 0.280113 | 6.3:-68659713 | MS.gene45012:CDS |
| AGAAACATCATGAGGTTTCT+TGG | 0.297550 | 6.3:+68660781 | None:intergenic |
| TGGTCAGAAACTCTTTGATT+TGG | 0.314313 | 6.3:-68661085 | MS.gene45012:CDS |
| GGTCAGAAACTCTTTGATTT+GGG | 0.348537 | 6.3:-68661084 | MS.gene45012:CDS |
| GAAGGAGATGTCATTCTAAC+TGG | 0.363959 | 6.3:-68659490 | MS.gene45012:intron |
| TGCAGGTCTTCCATGGAGTT+TGG | 0.375260 | 6.3:-68660391 | MS.gene45012:CDS |
| TCTGCCATGGATTACGTTGC+TGG | 0.377543 | 6.3:-68660752 | MS.gene45012:intron |
| AGGGTTTGGTACTGCAGTCT+TGG | 0.379820 | 6.3:+68659731 | None:intergenic |
| ATGGAGTGAGACAATATGTT+TGG | 0.380552 | 6.3:-68659222 | MS.gene45012:CDS |
| AATTCTAGATTATCAGGGTT+TGG | 0.385946 | 6.3:+68659717 | None:intergenic |
| TGTAGGTAGATGAGGAAATT+CGG | 0.432772 | 6.3:-68659591 | MS.gene45012:intron |
| GGGTTTGGTACTGCAGTCTT+GGG | 0.445319 | 6.3:+68659732 | None:intergenic |
| TTGTATATCAGGTTATGCTT+TGG | 0.449174 | 6.3:-68660668 | MS.gene45012:intron |
| TTACCTTAGCAGCAGATTGA+AGG | 0.449895 | 6.3:+68660623 | None:intergenic |
| ACCGCTTGTGGTGTAAGAAT+AGG | 0.455359 | 6.3:+68659066 | None:intergenic |
| TCTTACATGACATTGTTTGA+AGG | 0.466709 | 6.3:-68659508 | MS.gene45012:CDS |
| ATGGAGTTTGGCAAAAGGCC+AGG | 0.472089 | 6.3:-68660379 | MS.gene45012:CDS |
| TAATTGGTGTGAACGTATCC+TGG | 0.475675 | 6.3:+68660361 | None:intergenic |
| GTTAGTCTGCAGGTCTTCCA+TGG | 0.477057 | 6.3:-68660398 | MS.gene45012:intron |
| TGCTTTATTGTAGGTAGATG+AGG | 0.477365 | 6.3:-68659599 | MS.gene45012:intron |
| CGGAATCGTTCATCCTTGTA+TGG | 0.478285 | 6.3:-68661105 | MS.gene45012:CDS |
| AAGTTGTTGTTCCTCGCGAT+CGG | 0.481542 | 6.3:-68661125 | MS.gene45012:CDS |
| TAATCTAGAATTATGGCTAA+AGG | 0.485618 | 6.3:-68659706 | MS.gene45012:intron |
| CTTCCATGGAGTTTGGCAAA+AGG | 0.487603 | 6.3:-68660384 | MS.gene45012:CDS |
| ATCAGGTTATGCTTTGGCAC+TGG | 0.495705 | 6.3:-68660662 | MS.gene45012:intron |
| GATTTGGGCACGAAGATCAT+CGG | 0.499364 | 6.3:-68661069 | MS.gene45012:CDS |
| AGAATAGGCTTGCATGCTGC+TGG | 0.503270 | 6.3:+68659081 | None:intergenic |
| ACAAACATATTTACCGCTTG+TGG | 0.523482 | 6.3:+68659054 | None:intergenic |
| AAAGAGTTTCTGACCATACA+AGG | 0.523507 | 6.3:+68661092 | None:intergenic |
| TGTTTCTGAATCCTCTGCCA+TGG | 0.543048 | 6.3:-68660765 | MS.gene45012:CDS |
| GGACCTTCAATCTGCTGCTA+AGG | 0.545703 | 6.3:-68660626 | MS.gene45012:intron |
| TAATGATTATGATGCTCTCA+AGG | 0.547788 | 6.3:-68659270 | MS.gene45012:CDS |
| TGGCACTGGATATGACTGCT+AGG | 0.551295 | 6.3:-68660648 | MS.gene45012:CDS |
| GGCACTGGATATGACTGCTA+GGG | 0.553282 | 6.3:-68660647 | MS.gene45012:CDS |
| AAGTTTGAATATCATGTCCT+TGG | 0.557607 | 6.3:+68659555 | None:intergenic |
| GCCATAATTCTAGATTATCA+GGG | 0.561139 | 6.3:+68659712 | None:intergenic |
| TTATCTCACAAGGTTGCACT+AGG | 0.563863 | 6.3:+68658909 | None:intergenic |
| GCCTATTCTTACACCACAAG+CGG | 0.573542 | 6.3:-68659067 | MS.gene45012:intron |
| ACTAGGCAACGCCGTTCCCA+AGG | 0.577431 | 6.3:-68661013 | MS.gene45012:intron |
| AGATGAGGAAATTCGGCAGA+AGG | 0.580418 | 6.3:-68659584 | MS.gene45012:CDS |
| AAAATCAGTGTTATCTCACA+AGG | 0.608937 | 6.3:+68658899 | None:intergenic |
| TATACCAGCAACGTAATCCA+TGG | 0.619737 | 6.3:+68660748 | None:intergenic |
| AGCAACGTAATCCATGGCAG+AGG | 0.630505 | 6.3:+68660754 | None:intergenic |
| GGCACGAAGATCATCGGCGT+CGG | 0.634217 | 6.3:-68661063 | MS.gene45012:CDS |
| AGGTTTCTTGGCGATGACGA+CGG | 0.638496 | 6.3:+68660793 | None:intergenic |
| GATGAACGATTCCGATCGCG+AGG | 0.650984 | 6.3:+68661114 | None:intergenic |
| TGTGTGAATGACCTTGGGAA+CGG | 0.667302 | 6.3:+68661002 | None:intergenic |
| GAGGATTCAGAAACATCATG+AGG | 0.674019 | 6.3:+68660773 | None:intergenic |
| TCGGCAGAAGGACTCAACCA+AGG | 0.710088 | 6.3:-68659572 | MS.gene45012:CDS |
| TGCACTAGGAATGAATACGA+TGG | 0.723385 | 6.3:+68658923 | None:intergenic |
| GTTGGTTTGAGAAACAACAC+TGG | 0.743840 | 6.3:+68660893 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATAAATAGTTTTTAAAT+GGG | + | chr6.3:68659612-68659631 | None:intergenic | 10.0% |
| !!! | TTTGATAAATAGTTTTTAAA+TGG | + | chr6.3:68659613-68659632 | None:intergenic | 10.0% |
| !! | AAAAAACACTTATTAAATCA+AGG | - | chr6.3:68659501-68659520 | MS.gene45012:CDS | 15.0% |
| !! | ATGAGAAAAATAAAAAAAGT+TGG | - | chr6.3:68658914-68658933 | MS.gene45012:CDS | 15.0% |
| !! | ATTTATTATCTTTGTATATC+AGG | - | chr6.3:68660321-68660340 | MS.gene45012:intron | 15.0% |
| !!! | AATCAAATTTGAAATTTGAA+AGG | + | chr6.3:68660285-68660304 | None:intergenic | 15.0% |
| !!! | ATCATAATCATTATTTTCTA+CGG | + | chr6.3:68661723-68661742 | None:intergenic | 15.0% |
| !!! | ATTAAATCAAGGATTTTAAA+TGG | - | chr6.3:68659512-68659531 | MS.gene45012:CDS | 15.0% |
| !!! | CGTAAAAATGTTTTTATTTA+TGG | - | chr6.3:68658948-68658967 | MS.gene45012:CDS | 15.0% |
| !!! | TAAGTTTTATGAATGATTTA+TGG | - | chr6.3:68661759-68661778 | MS.gene45012:intron | 15.0% |
| !!! | TGATAAATAGTTTTTAAATG+GGG | + | chr6.3:68659611-68659630 | None:intergenic | 15.0% |
| !!! | TTAAATCAAGGATTTTAAAT+GGG | - | chr6.3:68659513-68659532 | MS.gene45012:CDS | 15.0% |
| !! | AATATACACTTTCTTACAAT+AGG | + | chr6.3:68660667-68660686 | None:intergenic | 20.0% |
| !! | AATATTGTTTGAATTTGATG+TGG | + | chr6.3:68659209-68659228 | None:intergenic | 20.0% |
| !! | CTTATGAAGCTAATTAAAAA+TGG | + | chr6.3:68661471-68661490 | None:intergenic | 20.0% |
| !! | TGTAAAAAATTCAATGAGAA+CGG | + | chr6.3:68659831-68659850 | None:intergenic | 20.0% |
| !!! | ATTTTAGATGATGAATGTTT+GGG | - | chr6.3:68661575-68661594 | MS.gene45012:intron | 20.0% |
| !!! | GATTTTGTCTTTCTAATATA+AGG | - | chr6.3:68659458-68659477 | MS.gene45012:intron | 20.0% |
| !!! | TATTTTAGATGATGAATGTT+TGG | - | chr6.3:68661574-68661593 | MS.gene45012:intron | 20.0% |
| !!! | TTTAGAATTCACTATTTACA+TGG | - | chr6.3:68662010-68662029 | MS.gene45012:intron | 20.0% |
| ! | AAAAAATTTCCATCAACCAA+GGG | - | chr6.3:68658974-68658993 | MS.gene45012:intron | 25.0% |
| ! | AACAATTACACTTGAACTAT+TGG | - | chr6.3:68660426-68660445 | MS.gene45012:intron | 25.0% |
| ! | AGGAATGAATTGAATTGATT+TGG | + | chr6.3:68660032-68660051 | None:intergenic | 25.0% |
| ! | AGTGAATTCTAAATGCATAT+AGG | + | chr6.3:68662003-68662022 | None:intergenic | 25.0% |
| ! | CTAGATTCAGAAAACAAAAA+GGG | + | chr6.3:68659343-68659362 | None:intergenic | 25.0% |
| ! | CTCATATCAATAACATCTAT+GGG | + | chr6.3:68661170-68661189 | None:intergenic | 25.0% |
| ! | GACAACAATTGTATGTATTT+GGG | - | chr6.3:68661805-68661824 | MS.gene45012:intron | 25.0% |
| ! | TAAAAAATTTCCATCAACCA+AGG | - | chr6.3:68658973-68658992 | MS.gene45012:intron | 25.0% |
| ! | TAAACTAATTGCATAGAGAT+GGG | - | chr6.3:68661376-68661395 | MS.gene45012:intron | 25.0% |
| ! | TAGTTGAAAAAGACACTAAT+AGG | + | chr6.3:68661048-68661067 | None:intergenic | 25.0% |
| ! | TATTAGATCACGAAAATATC+AGG | + | chr6.3:68660553-68660572 | None:intergenic | 25.0% |
| ! | TCATATCAATAACATCTATG+GGG | + | chr6.3:68661169-68661188 | None:intergenic | 25.0% |
| ! | TCTCATATCAATAACATCTA+TGG | + | chr6.3:68661171-68661190 | None:intergenic | 25.0% |
| ! | TGACAACAATTGTATGTATT+TGG | - | chr6.3:68661804-68661823 | MS.gene45012:intron | 25.0% |
| ! | TGTCTTTCTAATATAAGGAT+CGG | - | chr6.3:68659463-68659482 | MS.gene45012:intron | 25.0% |
| ! | TTTCTTACAATAGGACTAAT+TGG | + | chr6.3:68660658-68660677 | None:intergenic | 25.0% |
| !! | ATACGGATTGAAAATTTCTT+TGG | - | chr6.3:68659386-68659405 | MS.gene45012:intron | 25.0% |
| !! | ATTATTTTCTACGGTAACAA+AGG | + | chr6.3:68661714-68661733 | None:intergenic | 25.0% |
| !! | GGAATGAATTGAATTGATTT+GGG | + | chr6.3:68660031-68660050 | None:intergenic | 25.0% |
| !! | TAATCTAGAATTATGGCTAA+AGG | - | chr6.3:68661294-68661313 | MS.gene45012:intron | 25.0% |
| !! | TGGTATATTACTTTCTTTTC+AGG | - | chr6.3:68662030-68662049 | MS.gene45012:intron | 25.0% |
| !!! | GCTTAGTAGTTTTACTTTTA+AGG | - | chr6.3:68660518-68660537 | MS.gene45012:intron | 25.0% |
| !!! | TAATTGACTCACTATTTTTC+AGG | - | chr6.3:68660082-68660101 | MS.gene45012:intron | 25.0% |
| AAAAGACACTAATAGGAACT+CGG | + | chr6.3:68661041-68661060 | None:intergenic | 30.0% | |
| AAATCTTCACAGGAAGATTT+GGG | + | chr6.3:68659366-68659385 | None:intergenic | 30.0% | |
| AACTACAATACTATATGCTG+TGG | + | chr6.3:68661095-68661114 | None:intergenic | 30.0% | |
| AAGTTTGAATATCATGTCCT+TGG | + | chr6.3:68661448-68661467 | None:intergenic | 30.0% | |
| AATTCTAGATTATCAGGGTT+TGG | + | chr6.3:68661286-68661305 | None:intergenic | 30.0% | |
| ACATCGTCTTACTTGAAAAA+TGG | - | chr6.3:68660128-68660147 | MS.gene45012:intron | 30.0% | |
| ACTACAATACTATATGCTGT+GGG | + | chr6.3:68661094-68661113 | None:intergenic | 30.0% | |
| AGATTCTCTCAATTAATTGC+AGG | + | chr6.3:68659310-68659329 | None:intergenic | 30.0% | |
| AGCCATAATTCTAGATTATC+AGG | + | chr6.3:68661292-68661311 | None:intergenic | 30.0% | |
| ATAGTGAGTCAATTACAGTA+CGG | + | chr6.3:68660077-68660096 | None:intergenic | 30.0% | |
| ATCCACATGATTTAAAAAGC+TGG | - | chr6.3:68659541-68659560 | MS.gene45012:CDS | 30.0% | |
| ATTGTTTGAATTTGATGTGG+AGG | + | chr6.3:68659206-68659225 | None:intergenic | 30.0% | |
| CAAACATATCTCGCAAATTT+AGG | + | chr6.3:68660892-68660911 | None:intergenic | 30.0% | |
| CAATGTATGTCTATCAACAT+AGG | + | chr6.3:68661666-68661685 | None:intergenic | 30.0% | |
| CAGATTAGGAAATTTGAGAA+AGG | + | chr6.3:68660052-68660071 | None:intergenic | 30.0% | |
| CATATCAATAACATCTATGG+GGG | + | chr6.3:68661168-68661187 | None:intergenic | 30.0% | |
| CTAAACTAATTGCATAGAGA+TGG | - | chr6.3:68661375-68661394 | MS.gene45012:intron | 30.0% | |
| GCCATAATTCTAGATTATCA+GGG | + | chr6.3:68661291-68661310 | None:intergenic | 30.0% | |
| GCTAGATTCAGAAAACAAAA+AGG | + | chr6.3:68659344-68659363 | None:intergenic | 30.0% | |
| TAAATCTTCACAGGAAGATT+TGG | + | chr6.3:68659367-68659386 | None:intergenic | 30.0% | |
| TAATGATTATGATGCTCTCA+AGG | - | chr6.3:68661730-68661749 | MS.gene45012:intron | 30.0% | |
| TCCACATGATTTAAAAAGCT+GGG | - | chr6.3:68659542-68659561 | MS.gene45012:CDS | 30.0% | |
| TCTTAAAAGCTAGCTATCAA+GGG | - | chr6.3:68660939-68660958 | MS.gene45012:intron | 30.0% | |
| TCTTACATGACATTGTTTGA+AGG | - | chr6.3:68661492-68661511 | MS.gene45012:intron | 30.0% | |
| TCTTCCTGTGAAGATTTATA+CGG | - | chr6.3:68659369-68659388 | MS.gene45012:intron | 30.0% | |
| TTGTATATCAGGTTATGCTT+TGG | - | chr6.3:68660332-68660351 | MS.gene45012:intron | 30.0% | |
| ! | ACCCTGATAATCTAGAATTA+TGG | - | chr6.3:68661287-68661306 | MS.gene45012:intron | 30.0% |
| ! | CATCTCTATGCAATTAGTTT+AGG | + | chr6.3:68661377-68661396 | None:intergenic | 30.0% |
| ! | TAATTGAGAGAATCTAGCTT+CGG | - | chr6.3:68659315-68659334 | MS.gene45012:intron | 30.0% |
| !!! | AGTTTTTTTGCACTTCTTCT+TGG | - | chr6.3:68661321-68661340 | MS.gene45012:intron | 30.0% |
| !!! | TTTTTCAAGTAAGACGATGT+TGG | + | chr6.3:68660128-68660147 | None:intergenic | 30.0% |
| AAAGACACTAATAGGAACTC+GGG | + | chr6.3:68661040-68661059 | None:intergenic | 35.0% | |
| AAAGAGTTTCTGACCATACA+AGG | + | chr6.3:68659911-68659930 | None:intergenic | 35.0% | |
| AATTCCATATGACATGCACA+CGG | + | chr6.3:68660854-68660873 | None:intergenic | 35.0% | |
| ACAAACATATTTACCGCTTG+TGG | + | chr6.3:68661949-68661968 | None:intergenic | 35.0% | |
| AGAAACATCATGAGGTTTCT+TGG | + | chr6.3:68660222-68660241 | None:intergenic | 35.0% | |
| AGGGAAAGTGAAAAGTGAAA+AGG | + | chr6.3:68659675-68659694 | None:intergenic | 35.0% | |
| AGTGAAGTGAAAAGGGAAAA+GGG | + | chr6.3:68659694-68659713 | None:intergenic | 35.0% | |
| ATGGAGTGAGACAATATGTT+TGG | - | chr6.3:68661778-68661797 | MS.gene45012:intron | 35.0% | |
| ATTACAGTACGGATCAGATT+AGG | + | chr6.3:68660066-68660085 | None:intergenic | 35.0% | |
| CAATCCGTATAAATCTTCAC+AGG | + | chr6.3:68659376-68659395 | None:intergenic | 35.0% | |
| CTCTTAAAAGCTAGCTATCA+AGG | - | chr6.3:68660938-68660957 | MS.gene45012:intron | 35.0% | |
| CTTAAAAGCTAGCTATCAAG+GGG | - | chr6.3:68660940-68660959 | MS.gene45012:intron | 35.0% | |
| GGGAAAGTGAAAAGTGAAAA+GGG | + | chr6.3:68659674-68659693 | None:intergenic | 35.0% | |
| TCGTCTTACTTGAAAAATGG+CGG | - | chr6.3:68660131-68660150 | MS.gene45012:intron | 35.0% | |
| TGAAAAGGGAAAGTGAAGTT+AGG | + | chr6.3:68659660-68659679 | None:intergenic | 35.0% | |
| TGAAACAATCCAAGACAAAG+CGG | + | chr6.3:68660746-68660765 | None:intergenic | 35.0% | |
| TGGTCAGAAACTCTTTGATT+TGG | - | chr6.3:68659915-68659934 | MS.gene45012:intron | 35.0% | |
| TGTAGGTAGATGAGGAAATT+CGG | - | chr6.3:68661409-68661428 | MS.gene45012:intron | 35.0% | |
| TGTCAAATGCAAACACATGT+TGG | - | chr6.3:68659134-68659153 | MS.gene45012:intron | 35.0% | |
| TGTCTCTGTCAATGCTTTAT+AGG | + | chr6.3:68659015-68659034 | None:intergenic | 35.0% | |
| TTAAAAGCTAGCTATCAAGG+GGG | - | chr6.3:68660941-68660960 | MS.gene45012:intron | 35.0% | |
| TTTCACGAGTGAAGTGAAAA+GGG | + | chr6.3:68659701-68659720 | None:intergenic | 35.0% | |
| ! | ACCCAGCTTTTTAAATCATG+TGG | + | chr6.3:68659546-68659565 | None:intergenic | 35.0% |
| ! | AGATGGGTTTGCTTTATTGT+AGG | - | chr6.3:68661392-68661411 | MS.gene45012:intron | 35.0% |
| ! | GGTCAGAAACTCTTTGATTT+GGG | - | chr6.3:68659916-68659935 | MS.gene45012:intron | 35.0% |
| ! | TGCTTTATTGTAGGTAGATG+AGG | - | chr6.3:68661401-68661420 | MS.gene45012:intron | 35.0% |
| !! | ATAAAGCATTGACAGAGACA+TGG | - | chr6.3:68659015-68659034 | MS.gene45012:intron | 35.0% |
| !!! | GATAGCTAGCTTTTAAGAGA+GGG | + | chr6.3:68660937-68660956 | None:intergenic | 35.0% |
| !!! | TGATAGCTAGCTTTTAAGAG+AGG | + | chr6.3:68660938-68660957 | None:intergenic | 35.0% |
| AAAGGGAAAGTGAAGTTAGG+AGG | + | chr6.3:68659657-68659676 | None:intergenic | 40.0% | |
| AAATTCAATGAGAACGGTGC+AGG | + | chr6.3:68659825-68659844 | None:intergenic | 40.0% | |
| AAGGGAAAGTGAAGTTAGGA+GGG | + | chr6.3:68659656-68659675 | None:intergenic | 40.0% | |
| ACCAAGTAGTATGGAATGCT+CGG | + | chr6.3:68660993-68661012 | None:intergenic | 40.0% | |
| ACCCTCGATAATAAGGTCTT+GGG | - | chr6.3:68661632-68661651 | MS.gene45012:intron | 40.0% | |
| ACCTGCAGACTAACAACAAA+AGG | + | chr6.3:68660596-68660615 | None:intergenic | 40.0% | |
| ATCGAGTACCCTCGATAATA+AGG | - | chr6.3:68661625-68661644 | MS.gene45012:intron | 40.0% | |
| ATTCCATATGACATGCACAC+GGG | + | chr6.3:68660853-68660872 | None:intergenic | 40.0% | |
| CCTGCAGACTAACAACAAAA+GGG | + | chr6.3:68660595-68660614 | None:intergenic | 40.0% | |
| GAAATGATTCCGCTTTGTCT+TGG | - | chr6.3:68660734-68660753 | MS.gene45012:intron | 40.0% | |
| GAAGGAGATGTCATTCTAAC+TGG | - | chr6.3:68661510-68661529 | MS.gene45012:intron | 40.0% | |
| GAGGATTCAGAAACATCATG+AGG | + | chr6.3:68660230-68660249 | None:intergenic | 40.0% | |
| GAGTGAAGTGAAAAGGGAAA+AGG | + | chr6.3:68659695-68659714 | None:intergenic | 40.0% | |
| GCACTTCTTCTTGGATACTT+TGG | - | chr6.3:68661330-68661349 | MS.gene45012:intron | 40.0% | |
| GCAGCTCATGCTAAAAAACT+AGG | - | chr6.3:68659970-68659989 | MS.gene45012:intron | 40.0% | |
| GTTTCACGAGTGAAGTGAAA+AGG | + | chr6.3:68659702-68659721 | None:intergenic | 40.0% | |
| TAATTGGTGTGAACGTATCC+TGG | + | chr6.3:68660642-68660661 | None:intergenic | 40.0% | |
| TACCCTCGATAATAAGGTCT+TGG | - | chr6.3:68661631-68661650 | MS.gene45012:intron | 40.0% | |
| TATACCAGCAACGTAATCCA+TGG | + | chr6.3:68660255-68660274 | None:intergenic | 40.0% | |
| TCAACTGAACCAACACTTGA+TGG | + | chr6.3:68661601-68661620 | None:intergenic | 40.0% | |
| TGATAGCCTTTACAAGGACT+TGG | - | chr6.3:68660808-68660827 | MS.gene45012:CDS | 40.0% | |
| TGCACTAGGAATGAATACGA+TGG | + | chr6.3:68662080-68662099 | None:intergenic | 40.0% | |
| TGTAGACCAAGTCCTTGTAA+AGG | + | chr6.3:68660817-68660836 | None:intergenic | 40.0% | |
| TTACCTTAGCAGCAGATTGA+AGG | + | chr6.3:68660380-68660399 | None:intergenic | 40.0% | |
| TTCTCATCAAAAGCTGTGTC+TGG | + | chr6.3:68659163-68659182 | None:intergenic | 40.0% | |
| ! | AAGAGTGTGTGAATGACCTT+GGG | + | chr6.3:68660006-68660025 | None:intergenic | 40.0% |
| ! | GTTGTTGTTGGAGTTCGATT+GGG | + | chr6.3:68659780-68659799 | None:intergenic | 40.0% |
| !! | AGACGTTGATAGCCTTTACA+AGG | - | chr6.3:68660802-68660821 | MS.gene45012:CDS | 40.0% |
| !! | CAAGTGTTGGTTCAGTTGAT+TGG | - | chr6.3:68661602-68661621 | MS.gene45012:intron | 40.0% |
| !! | CATTCCATACTACTTGGTGT+CGG | - | chr6.3:68660995-68661014 | MS.gene45012:intron | 40.0% |
| !! | GTTGGTTTGAGAAACAACAC+TGG | + | chr6.3:68660110-68660129 | None:intergenic | 40.0% |
| !!! | GAAGAATGTTTTTTCGCCCT+TGG | + | chr6.3:68658993-68659012 | None:intergenic | 40.0% |
| AATGAGAACGGTGCAGGTTT+GGG | + | chr6.3:68659819-68659838 | None:intergenic | 45.0% | |
| ACCCCAAGACCTTATTATCG+AGG | + | chr6.3:68661637-68661656 | None:intergenic | 45.0% | |
| ACCGAGCATTCCATACTACT+TGG | - | chr6.3:68660989-68661008 | MS.gene45012:intron | 45.0% | |
| ACCGCTTGTGGTGTAAGAAT+AGG | + | chr6.3:68661937-68661956 | None:intergenic | 45.0% | |
| AGATGAGGAAATTCGGCAGA+AGG | - | chr6.3:68661416-68661435 | MS.gene45012:intron | 45.0% | |
| ATAGGAACTCGGGTATTACG+CGG | + | chr6.3:68661030-68661049 | None:intergenic | 45.0% | |
| ATCAGGTTATGCTTTGGCAC+TGG | - | chr6.3:68660338-68660357 | MS.gene45012:intron | 45.0% | |
| ATCGCGAGGAACAACAACTT+GGG | + | chr6.3:68659875-68659894 | None:intergenic | 45.0% | |
| ATGTCCGACACCAAGTAGTA+TGG | + | chr6.3:68661002-68661021 | None:intergenic | 45.0% | |
| ATGTTTGGGCCATCAAGTGT+TGG | - | chr6.3:68661589-68661608 | MS.gene45012:intron | 45.0% | |
| CCCCAAGACCTTATTATCGA+GGG | + | chr6.3:68661636-68661655 | None:intergenic | 45.0% | |
| CCCTCGATAATAAGGTCTTG+GGG | - | chr6.3:68661633-68661652 | MS.gene45012:intron | 45.0% | |
| CGGAATCGTTCATCCTTGTA+TGG | - | chr6.3:68659895-68659914 | MS.gene45012:intron | 45.0% | |
| CTTCCATGGAGTTTGGCAAA+AGG | - | chr6.3:68660616-68660635 | MS.gene45012:intron | 45.0% | |
| GATTTGGGCACGAAGATCAT+CGG | - | chr6.3:68659931-68659950 | MS.gene45012:intron | 45.0% | |
| GCCTATTCTTACACCACAAG+CGG | - | chr6.3:68661933-68661952 | MS.gene45012:intron | 45.0% | |
| GGAGGGTAGCACTTTACATT+TGG | + | chr6.3:68659639-68659658 | None:intergenic | 45.0% | |
| TGTGTGAATGACCTTGGGAA+CGG | + | chr6.3:68660001-68660020 | None:intergenic | 45.0% | |
| TTACCCGTGTGCATGTCATA+TGG | - | chr6.3:68660847-68660866 | MS.gene45012:CDS | 45.0% | |
| TTACCGCAAGCAATGAGTCA+TGG | - | chr6.3:68661141-68661160 | MS.gene45012:intron | 45.0% | |
| ! | AAGTTGTTGTTCCTCGCGAT+CGG | - | chr6.3:68659875-68659894 | MS.gene45012:intron | 45.0% |
| ! | GAAGAGTGTGTGAATGACCT+TGG | + | chr6.3:68660007-68660026 | None:intergenic | 45.0% |
| ! | GGAGTTCGATTGGTTGTTGT+TGG | + | chr6.3:68659792-68659811 | None:intergenic | 45.0% |
| ! | GGTTGTTGTTGGAGTTCGAT+TGG | + | chr6.3:68659781-68659800 | None:intergenic | 45.0% |
| ! | TGTTTCTGAATCCTCTGCCA+TGG | - | chr6.3:68660235-68660254 | MS.gene45012:intron | 45.0% |
| ! | TTGGAGTTCGATTGGGTTGT+TGG | + | chr6.3:68659773-68659792 | None:intergenic | 45.0% |
| ! | TTGGTGTTCGATTGGGTTGT+TGG | + | chr6.3:68659744-68659763 | None:intergenic | 45.0% |
| ! | TTTGGGGTTTGGAGTTCGAT+TGG | + | chr6.3:68659802-68659821 | None:intergenic | 45.0% |
| !! | ATACTACTTGGTGTCGGACA+TGG | - | chr6.3:68661001-68661020 | MS.gene45012:intron | 45.0% |
| !!! | CCCTTTTGTTGTTAGTCTGC+AGG | - | chr6.3:68660592-68660611 | MS.gene45012:intron | 45.0% |
| !!! | GTTTTTTCGCCCTTGGTTGA+TGG | + | chr6.3:68658986-68659005 | None:intergenic | 45.0% |
| AGAATAGGCTTGCATGCTGC+TGG | + | chr6.3:68661922-68661941 | None:intergenic | 50.0% | |
| AGCAACGTAATCCATGGCAG+AGG | + | chr6.3:68660249-68660268 | None:intergenic | 50.0% | |
| AGGTTTCTTGGCGATGACGA+CGG | + | chr6.3:68660210-68660229 | None:intergenic | 50.0% | |
| ATGAGAACGGTGCAGGTTTG+GGG | + | chr6.3:68659818-68659837 | None:intergenic | 50.0% | |
| ATGGAGTTTGGCAAAAGGCC+AGG | - | chr6.3:68660621-68660640 | MS.gene45012:intron | 50.0% | |
| CAATGAGAACGGTGCAGGTT+TGG | + | chr6.3:68659820-68659839 | None:intergenic | 50.0% | |
| GATCGCGAGGAACAACAACT+TGG | + | chr6.3:68659876-68659895 | None:intergenic | 50.0% | |
| GGACCATGACTCATTGCTTG+CGG | + | chr6.3:68661147-68661166 | None:intergenic | 50.0% | |
| GGACCTTCAATCTGCTGCTA+AGG | - | chr6.3:68660374-68660393 | MS.gene45012:CDS | 50.0% | |
| TGCAGGTCTTCCATGGAGTT+TGG | - | chr6.3:68660609-68660628 | MS.gene45012:intron | 50.0% | |
| ! | AGGGTTTGGTACTGCAGTCT+TGG | + | chr6.3:68661272-68661291 | None:intergenic | 50.0% |
| ! | ATTGGGTTGTTGGTGGAGCT+TGG | + | chr6.3:68659763-68659782 | None:intergenic | 50.0% |
| ! | GAGTTCGATTGGGTTGTTGG+TGG | + | chr6.3:68659770-68659789 | None:intergenic | 50.0% |
| ! | GGCACTGGATATGACTGCTA+GGG | - | chr6.3:68660353-68660372 | MS.gene45012:CDS | 50.0% |
| ! | GGGTTTGGTACTGCAGTCTT+GGG | + | chr6.3:68661271-68661290 | None:intergenic | 50.0% |
| ! | GGTAGAGTATCCACGTGACT+TGG | + | chr6.3:68660972-68660991 | None:intergenic | 50.0% |
| ! | GTGTTCGATTGGGTTGTTGG+TGG | + | chr6.3:68659741-68659760 | None:intergenic | 50.0% |
| ! | GTTAGTCTGCAGGTCTTCCA+TGG | - | chr6.3:68660602-68660621 | MS.gene45012:intron | 50.0% |
| ! | TCTGCCATGGATTACGTTGC+TGG | - | chr6.3:68660248-68660267 | MS.gene45012:intron | 50.0% |
| ! | TGGCACTGGATATGACTGCT+AGG | - | chr6.3:68660352-68660371 | MS.gene45012:intron | 50.0% |
| ! | TGGCCTTTTGCCAAACTCCA+TGG | + | chr6.3:68660622-68660641 | None:intergenic | 50.0% |
| ! | TGGGTTGTTGGTGGAGGTTT+GGG | + | chr6.3:68659732-68659751 | None:intergenic | 50.0% |
| ! | TTCGATTGGGTTGTTGGTGG+AGG | + | chr6.3:68659738-68659757 | None:intergenic | 50.0% |
| ! | TTGGGTTGTTGGTGGAGGTT+TGG | + | chr6.3:68659733-68659752 | None:intergenic | 50.0% |
| !! | GTGGAGCTTGGTGTTCGATT+GGG | + | chr6.3:68659751-68659770 | None:intergenic | 50.0% |
| GATGAACGATTCCGATCGCG+AGG | + | chr6.3:68659889-68659908 | None:intergenic | 55.0% | |
| TCGGCAGAAGGACTCAACCA+AGG | - | chr6.3:68661428-68661447 | MS.gene45012:intron | 55.0% | |
| ! | AACGGTGCAGGTTTGGGGTT+TGG | + | chr6.3:68659813-68659832 | None:intergenic | 55.0% |
| ! | GGGTTGTTGGTGGAGGTTTG+GGG | + | chr6.3:68659731-68659750 | None:intergenic | 55.0% |
| ! | GTTGGTGGAGGTTTGGGGTT+TGG | + | chr6.3:68659726-68659745 | None:intergenic | 55.0% |
| !! | GGTGGAGCTTGGTGTTCGAT+TGG | + | chr6.3:68659752-68659771 | None:intergenic | 55.0% |
| ACTAGGCAACGCCGTTCCCA+AGG | - | chr6.3:68659987-68660006 | MS.gene45012:intron | 60.0% | |
| GGCACGAAGATCATCGGCGT+CGG | - | chr6.3:68659937-68659956 | MS.gene45012:intron | 60.0% | |
| GGGGGAAGAACCAAGTCACG+TGG | - | chr6.3:68660959-68660978 | MS.gene45012:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 68658914 | 68662108 | 68658914 | ID=MS.gene45012 |
| chr6.3 | mRNA | 68658914 | 68662108 | 68658914 | ID=MS.gene45012.t1;Parent=MS.gene45012 |
| chr6.3 | exon | 68662087 | 68662108 | 68662087 | ID=MS.gene45012.t1.exon1;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68662087 | 68662108 | 68662087 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68661014 | 68661144 | 68661014 | ID=MS.gene45012.t1.exon2;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68661014 | 68661144 | 68661014 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68660753 | 68660918 | 68660753 | ID=MS.gene45012.t1.exon3;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68660753 | 68660918 | 68660753 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68660627 | 68660679 | 68660627 | ID=MS.gene45012.t1.exon4;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68660627 | 68660679 | 68660627 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68660353 | 68660415 | 68660353 | ID=MS.gene45012.t1.exon5;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68660353 | 68660415 | 68660353 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68659707 | 68659757 | 68659707 | ID=MS.gene45012.t1.exon6;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68659707 | 68659757 | 68659707 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68659491 | 68659608 | 68659491 | ID=MS.gene45012.t1.exon7;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68659491 | 68659608 | 68659491 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68659208 | 68659296 | 68659208 | ID=MS.gene45012.t1.exon8;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68659208 | 68659296 | 68659208 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68659068 | 68659127 | 68659068 | ID=MS.gene45012.t1.exon9;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68659068 | 68659127 | 68659068 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| chr6.3 | exon | 68658914 | 68658970 | 68658914 | ID=MS.gene45012.t1.exon10;Parent=MS.gene45012.t1 |
| chr6.3 | CDS | 68658914 | 68658970 | 68658914 | ID=cds.MS.gene45012.t1;Parent=MS.gene45012.t1 |
| Gene Sequence |
| Protein sequence |
