AlfalfaGEDB | MS.gene071505

M. sativa cultivar XinJiangDaYe / MS.gene071505

KEGG: K01557
GO: GO:0003674 GO:0003824
PFAM: PF01557.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071505.t1	XP_013458265.1	98.9	187	2	0	1	187	38	224	2.40E-97	364.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071505.t1	Q93ZE5	76.2	181	43	0	2	182	38	218	5.0e-75	282.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071505.t1	A0A072USI0	98.9	187	2	0	1	187	38	224	1.8e-97	364.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052176	MS.gene071505	0.80067	1.29E-48	-1.69E-46
MS.gene059899	MS.gene071505	0.805861	1.09E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene071505	MS.gene035368	PPI
MS.gene071505	MS.gene041601	PPI
MS.gene071505	MS.gene45012	PPI
MS.gene071505	MS.gene041603	PPI
MS.gene071505	MS.gene071503	PPI
MS.gene071505	MS.gene035366	PPI
MS.gene071505	MS.gene066362	PPI
MS.gene071505	MS.gene77824	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071505.t1	MTR_4g120230	98.930	187	2	0	1	187	38	224	9.85e-135	376
MS.gene071505.t1	MTR_4g120230	99.333	150	1	0	1	150	38	187	3.14e-107	305

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071505.t1	AT4G15940	75.691	181	43	1	2	182	38	217	1.40e-98	284
MS.gene071505.t1	AT3G16700	74.033	181	47	0	2	182	38	218	1.35e-96	280
MS.gene071505.t1	AT3G16700	72.973	111	30	0	2	112	38	148	1.14e-54	171
MS.gene071505.t1	AT3G16700	76.056	71	17	0	2	72	38	108	1.15e-32	114
MS.gene071505.t1	AT3G16700	76.056	71	17	0	2	72	38	108	1.15e-32	114

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Find 0 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACACTAATAGGAACT+CGG	+	32564:12104-12123	None:intergenic	30.0%
AACTACAATACTATATGCTG+TGG	+	32564:12158-12177	None:intergenic	30.0%
AAGTTTGAATATCATGTCCT+TGG	+	32564:12511-12530	None:intergenic	30.0%
ACATCGTCTTACTTGAAAAA+TGG	-	32564:11209-11228	MS.gene071505:CDS	30.0%
ACTACAATACTATATGCTGT+GGG	+	32564:12157-12176	None:intergenic	30.0%
AGCATACACTTTCTTACAAT+AGG	+	32564:11707-11726	None:intergenic	30.0%
ATTTAACCTATGAAGGAAAC+TGG	+	32564:13343-13362	None:intergenic	30.0%
CAAACATATCTCGCAAATTT+AGG	+	32564:11932-11951	None:intergenic	30.0%
CATATCAATAACATCTATGG+GGG	+	32564:12231-12250	None:intergenic	30.0%
CTAAACTAATTGCATAGAGA+TGG	-	32564:12438-12457	MS.gene071505:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
32564	gene	11185	13528	11185	ID=MS.gene071505
32564	mRNA	11185	13528	11185	ID=MS.gene071505.t1;Parent=MS.gene071505
32564	exon	13363	13528	13363	ID=MS.gene071505.t1.exon1;Parent=MS.gene071505.t1
32564	CDS	13363	13528	13363	ID=cds.MS.gene071505.t1;Parent=MS.gene071505.t1
32564	exon	13237	13289	13237	ID=MS.gene071505.t1.exon2;Parent=MS.gene071505.t1
32564	CDS	13237	13289	13237	ID=cds.MS.gene071505.t1;Parent=MS.gene071505.t1
32564	exon	13004	13066	13004	ID=MS.gene071505.t1.exon3;Parent=MS.gene071505.t1
32564	CDS	13004	13066	13004	ID=cds.MS.gene071505.t1;Parent=MS.gene071505.t1
32564	exon	12335	12385	12335	ID=MS.gene071505.t1.exon4;Parent=MS.gene071505.t1
32564	CDS	12335	12385	12335	ID=cds.MS.gene071505.t1;Parent=MS.gene071505.t1
32564	exon	12119	12236	12119	ID=MS.gene071505.t1.exon5;Parent=MS.gene071505.t1
32564	CDS	12119	12236	12119	ID=cds.MS.gene071505.t1;Parent=MS.gene071505.t1
32564	exon	11185	11297	11185	ID=MS.gene071505.t1.exon6;Parent=MS.gene071505.t1
32564	CDS	11185	11297	11185	ID=cds.MS.gene071505.t1;Parent=MS.gene071505.t1

Gene Sequence

>MS.gene071505

GCACCAGTGTTGTTTCTCAAACCAACATCGTCTTACTTGAAAAATGGCGGAACAATCGAAATTCCACACAACGAGAGTTCTCTCCATCACGAAGTCGAACTCGCCGTCGTCATCGCCAAGAAAGCTCGTGATGTTTCTGAATCCTCTGCCATGGATTACGTTGCTGGTATAACTCGTTCCTTTCAAATTTCAAATTTGATTGATTTTATTATCTTTAATTTATTATCTTTGTATATCAGGTTATGCTTTGGCACTGGATATGACTGCTAGGGACCTTCAATCTGCTGCTAAGGTAAAAAATAAAACTGTATAACAATTACACTTGAACCACTGGGATGTACATAAGTATGAAATGATTTGTGTATTAATTATCTTTTGCTTTAGCAATGTGTTATATTTAAGGTGATTGATATTTTCGTGATCTAATACTTGATGTTGTTTCTTTTTCCCTTTTGTTGTTAGTCTGCAGGTCTTCCATGGAGTTTGGCAAAAGGCCAGGATACGTTCACACCAATTAGTCCTATTGTAAGAAAGTGTATGCTGTGATGCTTATTATATGCTTTAACTATTTTCTAAATGAAATATTTGAGAAATGATTCCACTTTGTCTTGGATTGTTTCAAGTATGAAGAACTACAGATAATGATAATATATATTAAGACGTTGATCGCCTTTACAAGCACTTGGTCTACATACACTCGCATTACCCGTGTGCATGTCATATGGAATTAATATATTACTTGCTCCTAAATTTGCGAGATATGTTTGACATGTATCAAGTATTAAAGAACCCTCTCTTAAAAGCTAGCTATCAAGGGGGAAGAACCAAGTCACGTGGATACTCTACCGAGCATTCCATACTACTTAGCACATCAAGTATCAAGTCACGTGGATACTCGGGTATTACCGCGTAATACCCGAGTTCCTATTAGTGTCTTTTTCAACAAAATAATAATAATTGTACTAGCTTCCCACAGCATATAGTATTGTAGTTCTGTAGTTCAATTAGACTCATTCTTCTTACCACAAGCAATGAGTCATGGTCCCCCATAGATGTTATTGATATGAGAACACAATTATTTTTTACGTCTACTTATTTGATGAGCTATGTTCTTCAAGTGTAATTGTTTTTAATTATATGCAGTTACCCAAGACTGCAGTACCAAACCCTGATGATCTAGAATTATGGCTAAAGGTTTGAGTTTTTTTGCACTTCTTCTTGGATACTTTGGTCTATTGTAATGCATTATCTACCTAAACTAATTGCATAGAGATGGGTTTGCTTTGTTGTAGGTAGATGAGGAAATTCGGCAGAAGGGCTCAACCAAGGACATGATATTCAAACTTCCATTTTTAATTAGCTTCATAAGCTCTTACATGACATTGTTTGAAGGAGATGTCATTCTAACTGGTATTATCTTTATACTTCATCTGCTTATTTATATTTGTGCTATATTTTAGATGATGAATGTTTGGGCCATCAAGTGTTGGTTCAGTTGATTGGATTGAGTACCCTCGATAATAAGGTCTTGGGGTTCTCGACCTATGTTGATAGACATATATTGCTAAGTTTATATGTAAGTATACGAGCCTTTGCAAAGGATCATGGCTTGTCGCGCTCTTGGAAACGGGTAACCTCCCTTCTCCCCAAAACCGTTCTTGGAAAAAAATAAAGTTTGGAACTGTTTGTGTTTTTTATTTCAATTTGATAACAATGAAGAGTTAGCCACGTCTAATGGTAGTGATATTGGATTGCCTTATTTGCTTCGAGATCATGCTTGGGGATGGGGCCGAAAGTGAGTCAAGTTAGCTCCTGTGCCCACTTGGCAGCTCATATCATTATCAGTTCAATGAATTGAGAATTTCATCTTTATAAAATATAGGCTAACCTTGAGTTTTCAAATGTTTGAGTTACTGTTTAACAAAGTACTTAAAAAAGGATTTTACTATTAATTTACAGATTCTAGCTTAACAAATGGAGCCTAAAATATTCAATTAATATGAGGCTTGTTATTGATTCATTAAGCTGAAATACCTTGTGACTTAGGTAAGTTGAACTAAGCAAATAAGTTTGATACTTACAAGTTAGCCGAGCTTGATCTTAGGCTTAGGTTGACTTACTACGAGCATTACTTGTGGAACTGTTTTGCACTTAACCAGTTTCCTTCATAGGTTAAATATAATGCATGCATTACATGATGTCCAGTTAACATTGATTATGATGATGTGCAGGCACTCCCCCGGGTGTTGGCCCTGTGAAAGAAGGTCAAAAGATAACTGCTGGTATTACAGGCCTCGTGGACGTGGAGTTTAATGTTAGAAAAAGGAAAATATCCGGAACTTAA

Protein sequence

>MS.gene071505.t1

APVLFLKPTSSYLKNGGTIEIPHNESSLHHEVELAVVIAKKARDVSESSAMDYVAGYALALDMTARDLQSAAKSAGLPWSLAKGQDTFTPISPILPKTAVPNPDDLELWLKVDEEIRQKGSTKDMIFKLPFLISFISSYMTLFEGDVILTGTPPGVGPVKEGQKITAGITGLVDVEFNVRKRKISGT