Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77824.t1 | XP_013458265.1 | 98.9 | 187 | 2 | 0 | 1 | 187 | 38 | 224 | 2.40E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77824.t1 | Q93ZE5 | 76.2 | 181 | 43 | 0 | 2 | 182 | 38 | 218 | 5.0e-75 | 282.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77824.t1 | A0A072USI0 | 98.9 | 187 | 2 | 0 | 1 | 187 | 38 | 224 | 1.8e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene77824 | 0.809968 | 1.46E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene77824 | 0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene77824 | 0.801216 | 1.00E-48 | -1.69E-46 |
| MS.gene052176 | MS.gene77824 | 0.807326 | 5.34E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene77824 | 0.808031 | 3.78E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene77824 | 0.811059 | 8.46E-51 | -1.69E-46 |
| MS.gene061002 | MS.gene77824 | 0.800601 | 1.34E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041603 | MS.gene77824 | PPI |
| MS.gene041601 | MS.gene77824 | PPI |
| MS.gene071503 | MS.gene77824 | PPI |
| MS.gene035368 | MS.gene77824 | PPI |
| MS.gene066362 | MS.gene77824 | PPI |
| MS.gene45012 | MS.gene77824 | PPI |
| MS.gene77824 | MS.gene041601 | PPI |
| MS.gene071505 | MS.gene77824 | PPI |
| MS.gene035366 | MS.gene77824 | PPI |
| MS.gene77824 | MS.gene066362 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77824.t1 | MTR_4g120230 | 98.930 | 187 | 2 | 0 | 1 | 187 | 38 | 224 | 9.85e-135 | 376 |
| MS.gene77824.t1 | MTR_4g120230 | 99.333 | 150 | 1 | 0 | 1 | 150 | 38 | 187 | 3.14e-107 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77824.t1 | AT4G15940 | 75.691 | 181 | 43 | 1 | 2 | 182 | 38 | 217 | 1.40e-98 | 284 |
| MS.gene77824.t1 | AT3G16700 | 74.033 | 181 | 47 | 0 | 2 | 182 | 38 | 218 | 1.35e-96 | 280 |
| MS.gene77824.t1 | AT3G16700 | 72.973 | 111 | 30 | 0 | 2 | 112 | 38 | 148 | 1.14e-54 | 171 |
| MS.gene77824.t1 | AT3G16700 | 76.056 | 71 | 17 | 0 | 2 | 72 | 38 | 108 | 1.15e-32 | 114 |
| MS.gene77824.t1 | AT3G16700 | 76.056 | 71 | 17 | 0 | 2 | 72 | 38 | 108 | 1.15e-32 | 114 |
Find 0 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATCTTTATAAAATAT+AGG | - | 32566:11463-11482 | MS.gene77824:CDS | 10.0% |
| !! | TAAAATATTCAATTAATATG+AGG | - | 32566:11585-11604 | MS.gene77824:intron | 10.0% |
| !!! | TCATATTAATTGAATATTTT+AGG | + | 32566:11586-11605 | None:intergenic | 10.0% |
| !! | ATTTATTATCTTTGTATATC+AGG | - | 32566:9798-9817 | MS.gene77824:intron | 15.0% |
| !!! | AATCAAATTTGAAATTTGAA+AGG | + | 32566:9762-9781 | None:intergenic | 15.0% |
| !!! | TTTAACAAAGTACTTAAAAA+AGG | - | 32566:11519-11538 | MS.gene77824:intron | 15.0% |
| !! | CTTATGAAGCTAATTAAAAA+TGG | + | 32566:10952-10971 | None:intergenic | 20.0% |
| !! | TCTTGGAAAAAAATAAAGTT+TGG | - | 32566:11259-11278 | MS.gene77824:intron | 20.0% |
| !! | TTAGCAATGTGTTATATTTA+AGG | - | 32566:9963-9982 | MS.gene77824:intron | 20.0% |
| !!! | ACTTTATTTTTTTCCAAGAA+CGG | + | 32566:11258-11277 | None:intergenic | 20.0% |
| !!! | ATTTTAGATGATGAATGTTT+GGG | - | 32566:11056-11075 | MS.gene77824:intron | 20.0% |
| !!! | TATTTTAGATGATGAATGTT+TGG | - | 32566:11055-11074 | MS.gene77824:intron | 20.0% |
| ! | ACATATATTGCTAAGTAGTA+TGG | + | 32566:10445-10464 | None:intergenic | 25.0% |
| ! | CAATATATGTCTATCAACAT+AGG | + | 32566:11147-11166 | None:intergenic | 25.0% |
| ! | CTCATATCAATAACATCTAT+GGG | + | 32566:10651-10670 | None:intergenic | 25.0% |
| ! | GCATTATATTTAACCTATGA+AGG | + | 32566:11768-11787 | None:intergenic | 25.0% |
| ! | GTTAGAAAAAGGAAAATATC+CGG | - | 32566:11917-11936 | MS.gene77824:CDS | 25.0% |
| ! | TAAACTAATTGCATAGAGAT+GGG | - | 32566:10857-10876 | MS.gene77824:intron | 25.0% |
| ! | TCATATCAATAACATCTATG+GGG | + | 32566:10650-10669 | None:intergenic | 25.0% |
| ! | TCATCATAATCAATGTTAAC+TGG | + | 32566:11807-11826 | None:intergenic | 25.0% |
| ! | TCTCATATCAATAACATCTA+TGG | + | 32566:10652-10671 | None:intergenic | 25.0% |
| ! | TGGAGTTTAATGTTAGAAAA+AGG | - | 32566:11906-11925 | MS.gene77824:CDS | 25.0% |
| ! | TTGTTGAAAAAGACACTAAT+AGG | + | 32566:10529-10548 | None:intergenic | 25.0% |
| ! | TTTCTTACAATAGGACTAAT+TGG | + | 32566:10096-10115 | None:intergenic | 25.0% |
| AAAAGACACTAATAGGAACT+CGG | + | 32566:10522-10541 | None:intergenic | 30.0% | |
| AACTACAATACTATATGCTG+TGG | + | 32566:10576-10595 | None:intergenic | 30.0% | |
| AAGTTTGAATATCATGTCCT+TGG | + | 32566:10929-10948 | None:intergenic | 30.0% | |
| ACATCGTCTTACTTGAAAAA+TGG | - | 32566:9605-9624 | MS.gene77824:CDS | 30.0% | |
| ACTACAATACTATATGCTGT+GGG | + | 32566:10575-10594 | None:intergenic | 30.0% | |
| ACTTAATCAGTTTCCTTCAT+AGG | - | 32566:11752-11771 | MS.gene77824:intron | 30.0% | |
| AGCATACACTTTCTTACAAT+AGG | + | 32566:10105-10124 | None:intergenic | 30.0% | |
| CAAACATATCTCGCAAATTT+AGG | + | 32566:10337-10356 | None:intergenic | 30.0% | |
| CATATCAATAACATCTATGG+GGG | + | 32566:10649-10668 | None:intergenic | 30.0% | |
| CTAAACTAATTGCATAGAGA+TGG | - | 32566:10856-10875 | MS.gene77824:intron | 30.0% | |
| CTCAAACATTTGAAAACTCA+AGG | + | 32566:11493-11512 | None:intergenic | 30.0% | |
| TCTTAAAAGCTAGCTATCAA+GGG | - | 32566:10382-10401 | MS.gene77824:intron | 30.0% | |
| TCTTACATGACATTGTTTGA+AGG | - | 32566:10973-10992 | MS.gene77824:intron | 30.0% | |
| TTGTATATCAGGTTATGCTT+TGG | - | 32566:9809-9828 | MS.gene77824:intron | 30.0% | |
| ! | CATCTCTATGCAATTAGTTT+AGG | + | 32566:10858-10877 | None:intergenic | 30.0% |
| ! | TGATCTAGAATTATGGCTAA+AGG | - | 32566:10775-10794 | MS.gene77824:intron | 30.0% |
| !! | ACAGATTCTAGCTTAACAAA+TGG | - | 32566:11558-11577 | MS.gene77824:intron | 30.0% |
| !!! | AGTTTTTTTGCACTTCTTCT+TGG | - | 32566:10802-10821 | MS.gene77824:intron | 30.0% |
| !!! | TTGATAGCTAGCTTTTAAGA+GGG | + | 32566:10382-10401 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGTAAGACGATGT+TGG | + | 32566:9605-9624 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCAAGAACGGTTT+CGG | + | 32566:11252-11271 | None:intergenic | 30.0% |
| AAAGACACTAATAGGAACTC+GGG | + | 32566:10521-10540 | None:intergenic | 35.0% | |
| AACAATTACACTTGAACCAC+TGG | - | 32566:9894-9913 | MS.gene77824:intron | 35.0% | |
| AAGATAACTGCTGGTATTAC+AGG | - | 32566:11872-11891 | MS.gene77824:CDS | 35.0% | |
| AATATCACTACCATTAGACG+TGG | + | 32566:11331-11350 | None:intergenic | 35.0% | |
| AATTCCATATGACATGCACA+CGG | + | 32566:10294-10313 | None:intergenic | 35.0% | |
| AATTCTAGATCATCAGGGTT+TGG | + | 32566:10767-10786 | None:intergenic | 35.0% | |
| ACAATTACACTTGAACCACT+GGG | - | 32566:9895-9914 | MS.gene77824:intron | 35.0% | |
| AGCCATAATTCTAGATCATC+AGG | + | 32566:10773-10792 | None:intergenic | 35.0% | |
| CTCTTAAAAGCTAGCTATCA+AGG | - | 32566:10381-10400 | MS.gene77824:intron | 35.0% | |
| CTTAAAAGCTAGCTATCAAG+GGG | - | 32566:10383-10402 | MS.gene77824:intron | 35.0% | |
| GAAATGATTCCACTTTGTCT+TGG | - | 32566:10174-10193 | MS.gene77824:intron | 35.0% | |
| GCCATAATTCTAGATCATCA+GGG | + | 32566:10772-10791 | None:intergenic | 35.0% | |
| TCGTCTTACTTGAAAAATGG+CGG | - | 32566:9608-9627 | MS.gene77824:CDS | 35.0% | |
| TGAAACAATCCAAGACAAAG+TGG | + | 32566:10186-10205 | None:intergenic | 35.0% | |
| TGTAGGTAGATGAGGAAATT+CGG | - | 32566:10890-10909 | MS.gene77824:intron | 35.0% | |
| TTAAAAGCTAGCTATCAAGG+GGG | - | 32566:10384-10403 | MS.gene77824:intron | 35.0% | |
| TTCAACTTACCTAAGTCACA+AGG | + | 32566:11639-11658 | None:intergenic | 35.0% | |
| ! | ACCCTGATGATCTAGAATTA+TGG | - | 32566:10768-10787 | MS.gene77824:intron | 35.0% |
| ! | ACGTCTAATGGTAGTGATAT+TGG | - | 32566:11330-11349 | MS.gene77824:intron | 35.0% |
| ! | ATCTTTTGACCTTCTTTCAC+AGG | + | 32566:11857-11876 | None:intergenic | 35.0% |
| ! | CATTGATTATGATGATGTGC+AGG | - | 32566:11812-11831 | MS.gene77824:CDS | 35.0% |
| ! | TCTTTTGACCTTCTTTCACA+GGG | + | 32566:11856-11875 | None:intergenic | 35.0% |
| !! | GTTGGTTTGAGAAACAATAC+TGG | + | 32566:9587-9606 | None:intergenic | 35.0% |
| !!! | CTTGATAGCTAGCTTTTAAG+AGG | + | 32566:10383-10402 | None:intergenic | 35.0% |
| !!! | TTTTTTCCAAGAACGGTTTC+GGG | + | 32566:11251-11270 | None:intergenic | 35.0% |
| AAGTATACGAGCCTTTGCAA+AGG | - | 32566:11181-11200 | MS.gene77824:intron | 40.0% | |
| AATGATATGAGCTGCCAAGT+GGG | + | 32566:11423-11442 | None:intergenic | 40.0% | |
| ACCCTCGATAATAAGGTCTT+GGG | - | 32566:11113-11132 | MS.gene77824:intron | 40.0% | |
| ACCTGCAGACTAACAACAAA+AGG | + | 32566:10034-10053 | None:intergenic | 40.0% | |
| AGAAACATCACGAGCTTTCT+TGG | + | 32566:9699-9718 | None:intergenic | 40.0% | |
| ATCGAGTACCCTCGATAATA+AGG | - | 32566:11106-11125 | MS.gene77824:intron | 40.0% | |
| ATTCCATATGACATGCACAC+GGG | + | 32566:10293-10312 | None:intergenic | 40.0% | |
| ATTTGCTTCGAGATCATGCT+TGG | - | 32566:11361-11380 | MS.gene77824:intron | 40.0% | |
| CATACTTATGTACATCCCAG+TGG | + | 32566:9913-9932 | None:intergenic | 40.0% | |
| CCTGCAGACTAACAACAAAA+GGG | + | 32566:10033-10052 | None:intergenic | 40.0% | |
| CTTACTACGAGCATTACTTG+TGG | - | 32566:11718-11737 | MS.gene77824:intron | 40.0% | |
| GAAGGAGATGTCATTCTAAC+TGG | - | 32566:10991-11010 | MS.gene77824:intron | 40.0% | |
| GAAGGTCAAAAGATAACTGC+TGG | - | 32566:11863-11882 | MS.gene77824:CDS | 40.0% | |
| GAGCTAACTTGACTCACTTT+CGG | + | 32566:11395-11414 | None:intergenic | 40.0% | |
| GCACTTCTTCTTGGATACTT+TGG | - | 32566:10811-10830 | MS.gene77824:intron | 40.0% | |
| GCATGATCTCGAAGCAAATA+AGG | + | 32566:11360-11379 | None:intergenic | 40.0% | |
| GCTAAGTAGTATGGAATGCT+CGG | + | 32566:10436-10455 | None:intergenic | 40.0% | |
| GCTGAAATACCTTGTGACTT+AGG | - | 32566:11627-11646 | MS.gene77824:intron | 40.0% | |
| GTATCAAGTATCAAGTCACG+TGG | - | 32566:10471-10490 | MS.gene77824:intron | 40.0% | |
| TAATGATATGAGCTGCCAAG+TGG | + | 32566:11424-11443 | None:intergenic | 40.0% | |
| TAATTGGTGTGAACGTATCC+TGG | + | 32566:10080-10099 | None:intergenic | 40.0% | |
| TACCCTCGATAATAAGGTCT+TGG | - | 32566:11112-11131 | MS.gene77824:intron | 40.0% | |
| TATACCAGCAACGTAATCCA+TGG | + | 32566:9732-9751 | None:intergenic | 40.0% | |
| TATCAAGTCACGTGGATACT+CGG | - | 32566:10479-10498 | MS.gene77824:intron | 40.0% | |
| TCAACTGAACCAACACTTGA+TGG | + | 32566:11082-11101 | None:intergenic | 40.0% | |
| TGTAGACCAAGTCCTTGTAA+AGG | + | 32566:10257-10276 | None:intergenic | 40.0% | |
| TTACCACAAGCAATGAGTCA+TGG | - | 32566:10622-10641 | MS.gene77824:intron | 40.0% | |
| TTACCTTAGCAGCAGATTGA+AGG | + | 32566:9857-9876 | None:intergenic | 40.0% | |
| TTTGCTTCGAGATCATGCTT+GGG | - | 32566:11362-11381 | MS.gene77824:intron | 40.0% | |
| ! | AGATGGGTTTGCTTTGTTGT+AGG | - | 32566:10873-10892 | MS.gene77824:intron | 40.0% |
| ! | TGCTTTGTTGTAGGTAGATG+AGG | - | 32566:10882-10901 | MS.gene77824:intron | 40.0% |
| ! | TTTTTCCAAGAACGGTTTCG+GGG | + | 32566:11250-11269 | None:intergenic | 40.0% |
| !! | CAAGTGTTGGTTCAGTTGAT+TGG | - | 32566:11083-11102 | MS.gene77824:intron | 40.0% |
| ACCCCAAGACCTTATTATCG+AGG | + | 32566:11118-11137 | None:intergenic | 45.0% | |
| AGACGTTGATCGCCTTTACA+AGG | - | 32566:10242-10261 | MS.gene77824:intron | 45.0% | |
| AGATGAGGAAATTCGGCAGA+AGG | - | 32566:10897-10916 | MS.gene77824:intron | 45.0% | |
| AGTTAGCCGAGCTTGATCTT+AGG | - | 32566:11685-11704 | MS.gene77824:CDS | 45.0% | |
| ATAGGAACTCGGGTATTACG+CGG | + | 32566:10511-10530 | None:intergenic | 45.0% | |
| ATCAAGTCACGTGGATACTC+GGG | - | 32566:10480-10499 | MS.gene77824:intron | 45.0% | |
| ATCAGGTTATGCTTTGGCAC+TGG | - | 32566:9815-9834 | MS.gene77824:intron | 45.0% | |
| ATGTTTGGGCCATCAAGTGT+TGG | - | 32566:11070-11089 | MS.gene77824:intron | 45.0% | |
| CAAGCCATGATCCTTTGCAA+AGG | + | 32566:11195-11214 | None:intergenic | 45.0% | |
| CCCCAAGACCTTATTATCGA+GGG | + | 32566:11117-11136 | None:intergenic | 45.0% | |
| CCCTCGATAATAAGGTCTTG+GGG | - | 32566:11114-11133 | MS.gene77824:intron | 45.0% | |
| CCTAAGCCTAAGATCAAGCT+CGG | + | 32566:11694-11713 | None:intergenic | 45.0% | |
| CTTCCATGGAGTTTGGCAAA+AGG | - | 32566:10054-10073 | MS.gene77824:intron | 45.0% | |
| GAAGAGTTAGCCACGTCTAA+TGG | - | 32566:11318-11337 | MS.gene77824:intron | 45.0% | |
| GATGAGGAAATTCGGCAGAA+GGG | - | 32566:10898-10917 | MS.gene77824:intron | 45.0% | |
| TGATCGCCTTTACAAGGACT+TGG | - | 32566:10248-10267 | MS.gene77824:intron | 45.0% | |
| TTACCCGTGTGCATGTCATA+TGG | - | 32566:10287-10306 | MS.gene77824:intron | 45.0% | |
| TTGCTTCGAGATCATGCTTG+GGG | - | 32566:11363-11382 | MS.gene77824:intron | 45.0% | |
| ! | TGTTTCTGAATCCTCTGCCA+TGG | - | 32566:9712-9731 | MS.gene77824:intron | 45.0% |
| !!! | CCCTTTTGTTGTTAGTCTGC+AGG | - | 32566:10030-10049 | MS.gene77824:intron | 45.0% |
| AAGAACGGTTTCGGGGAGAA+GGG | + | 32566:11243-11262 | None:intergenic | 50.0% | |
| AGCAACGTAATCCATGGCAG+AGG | + | 32566:9726-9745 | None:intergenic | 50.0% | |
| AGCTTTCTTGGCGATGACGA+CGG | + | 32566:9687-9706 | None:intergenic | 50.0% | |
| ATGGAGTTTGGCAAAAGGCC+AGG | - | 32566:10059-10078 | MS.gene77824:intron | 50.0% | |
| CATTAAACTCCACGTCCACG+AGG | + | 32566:11898-11917 | None:intergenic | 50.0% | |
| CCGAGCTTGATCTTAGGCTT+AGG | - | 32566:11691-11710 | MS.gene77824:intron | 50.0% | |
| CGAGCCTTTGCAAAGGATCA+TGG | - | 32566:11188-11207 | MS.gene77824:intron | 50.0% | |
| GGACCATGACTCATTGCTTG+TGG | + | 32566:10628-10647 | None:intergenic | 50.0% | |
| GGACCTTCAATCTGCTGCTA+AGG | - | 32566:9851-9870 | MS.gene77824:intron | 50.0% | |
| TCGAGATCATGCTTGGGGAT+GGG | - | 32566:11368-11387 | MS.gene77824:intron | 50.0% | |
| TGCAGGTCTTCCATGGAGTT+TGG | - | 32566:10047-10066 | MS.gene77824:intron | 50.0% | |
| TGGAGAGAACTCTCGTTGTG+TGG | + | 32566:9647-9666 | None:intergenic | 50.0% | |
| TTCGAGATCATGCTTGGGGA+TGG | - | 32566:11367-11386 | MS.gene77824:intron | 50.0% | |
| ! | AGGGTTTGGTACTGCAGTCT+TGG | + | 32566:10753-10772 | None:intergenic | 50.0% |
| ! | GGCACTGGATATGACTGCTA+GGG | - | 32566:9830-9849 | MS.gene77824:intron | 50.0% |
| ! | GGGTTTGGTACTGCAGTCTT+GGG | + | 32566:10752-10771 | None:intergenic | 50.0% |
| ! | GGTAGAGTATCCACGTGACT+TGG | + | 32566:10415-10434 | None:intergenic | 50.0% |
| ! | GTTAGTCTGCAGGTCTTCCA+TGG | - | 32566:10040-10059 | MS.gene77824:intron | 50.0% |
| ! | TCTGCCATGGATTACGTTGC+TGG | - | 32566:9725-9744 | MS.gene77824:intron | 50.0% |
| ! | TGGCACTGGATATGACTGCT+AGG | - | 32566:9829-9848 | MS.gene77824:intron | 50.0% |
| ! | TGGCCTTTTGCCAAACTCCA+TGG | + | 32566:10060-10079 | None:intergenic | 50.0% |
| AGTTAGCTCCTGTGCCCACT+TGG | - | 32566:11406-11425 | MS.gene77824:intron | 55.0% | |
| CAAGAACGGTTTCGGGGAGA+AGG | + | 32566:11244-11263 | None:intergenic | 55.0% | |
| CGAGATCATGCTTGGGGATG+GGG | - | 32566:11369-11388 | MS.gene77824:intron | 55.0% | |
| CTTCTCCCCGAAACCGTTCT+TGG | - | 32566:11242-11261 | MS.gene77824:intron | 55.0% | |
| CTTGTCGCGCTCTTGGAAAG+GGG | - | 32566:11211-11230 | MS.gene77824:intron | 55.0% | |
| GCTTGTCGCGCTCTTGGAAA+GGG | - | 32566:11210-11229 | MS.gene77824:intron | 55.0% | |
| TATTACAGGCCTCGTGGACG+TGG | - | 32566:11886-11905 | MS.gene77824:CDS | 55.0% | |
| TCTTTCACAGGGCCAACACC+CGG | + | 32566:11845-11864 | None:intergenic | 55.0% | |
| TGCTGGTATTACAGGCCTCG+TGG | - | 32566:11880-11899 | MS.gene77824:CDS | 55.0% | |
| ! | ATCATGGCTTGTCGCGCTCT+TGG | - | 32566:11204-11223 | MS.gene77824:intron | 55.0% |
| !! | GGTGTTGGCCCTGTGAAAGA+AGG | - | 32566:11845-11864 | MS.gene77824:CDS | 55.0% |
| AACGGTTTCGGGGAGAAGGG+AGG | + | 32566:11240-11259 | None:intergenic | 60.0% | |
| ATGAGCTGCCAAGTGGGCAC+AGG | + | 32566:11417-11436 | None:intergenic | 60.0% | |
| ATGATGTGCAGGCACTCCCC+CGG | - | 32566:11823-11842 | MS.gene77824:CDS | 60.0% | |
| CGGCGAGTTCGACTTCGTGA+TGG | + | 32566:9667-9686 | None:intergenic | 60.0% | |
| CTTTCACAGGGCCAACACCC+GGG | + | 32566:11844-11863 | None:intergenic | 60.0% | |
| GGCTTGTCGCGCTCTTGGAA+AGG | - | 32566:11209-11228 | MS.gene77824:intron | 60.0% | |
| GGGGGAAGAACCAAGTCACG+TGG | - | 32566:10402-10421 | MS.gene77824:intron | 60.0% | |
| TCGGCAGAAGGGCTCAACCA+AGG | - | 32566:10909-10928 | MS.gene77824:intron | 60.0% | |
| TTTCACAGGGCCAACACCCG+GGG | + | 32566:11843-11862 | None:intergenic | 60.0% | |
| TGATGTGCAGGCACTCCCCC+GGG | - | 32566:11824-11843 | MS.gene77824:CDS | 65.0% | |
| TTCACAGGGCCAACACCCGG+GGG | + | 32566:11842-11861 | None:intergenic | 65.0% | |
| GCAGGCACTCCCCCGGGTGT+TGG | - | 32566:11830-11849 | MS.gene77824:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32566 | gene | 9581 | 11946 | 9581 | ID=MS.gene77824 |
| 32566 | mRNA | 9581 | 11946 | 9581 | ID=MS.gene77824.t1;Parent=MS.gene77824 |
| 32566 | exon | 11781 | 11946 | 11781 | ID=MS.gene77824.t1.exon1;Parent=MS.gene77824.t1 |
| 32566 | CDS | 11781 | 11946 | 11781 | ID=cds.MS.gene77824.t1;Parent=MS.gene77824.t1 |
| 32566 | exon | 11655 | 11707 | 11655 | ID=MS.gene77824.t1.exon2;Parent=MS.gene77824.t1 |
| 32566 | CDS | 11655 | 11707 | 11655 | ID=cds.MS.gene77824.t1;Parent=MS.gene77824.t1 |
| 32566 | exon | 11420 | 11482 | 11420 | ID=MS.gene77824.t1.exon3;Parent=MS.gene77824.t1 |
| 32566 | CDS | 11420 | 11482 | 11420 | ID=cds.MS.gene77824.t1;Parent=MS.gene77824.t1 |
| 32566 | exon | 10731 | 10781 | 10731 | ID=MS.gene77824.t1.exon4;Parent=MS.gene77824.t1 |
| 32566 | CDS | 10731 | 10781 | 10731 | ID=cds.MS.gene77824.t1;Parent=MS.gene77824.t1 |
| 32566 | exon | 10515 | 10632 | 10515 | ID=MS.gene77824.t1.exon5;Parent=MS.gene77824.t1 |
| 32566 | CDS | 10515 | 10632 | 10515 | ID=cds.MS.gene77824.t1;Parent=MS.gene77824.t1 |
| 32566 | exon | 9581 | 9693 | 9581 | ID=MS.gene77824.t1.exon6;Parent=MS.gene77824.t1 |
| 32566 | CDS | 9581 | 9693 | 9581 | ID=cds.MS.gene77824.t1;Parent=MS.gene77824.t1 |
| Gene Sequence |
| Protein sequence |
