Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45407.t1 | XP_013443964.1 | 93.4 | 151 | 8 | 2 | 1 | 151 | 1 | 149 | 9.30E-72 | 279.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45407.t1 | Q6DFN1 | 31.0 | 84 | 58 | 0 | 68 | 151 | 68 | 151 | 5.1e-10 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45407.t1 | B7FHB1 | 93.4 | 151 | 8 | 2 | 1 | 151 | 1 | 149 | 6.7e-72 | 279.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene45407 | -0.832459 | 9.34E-56 | -1.69E-46 |
| MS.gene04917 | MS.gene45407 | -0.827557 | 1.46E-54 | -1.69E-46 |
| MS.gene050361 | MS.gene45407 | -0.811963 | 5.38E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene45407 | 0.805522 | 1.28E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene45407 | 0.853859 | 1.81E-61 | -1.69E-46 |
| MS.gene050762 | MS.gene45407 | -0.846747 | 1.79E-59 | -1.69E-46 |
| MS.gene050763 | MS.gene45407 | -0.847477 | 1.13E-59 | -1.69E-46 |
| MS.gene050826 | MS.gene45407 | -0.800966 | 1.12E-48 | -1.69E-46 |
| MS.gene054379 | MS.gene45407 | -0.840737 | 7.26E-58 | -1.69E-46 |
| MS.gene055311 | MS.gene45407 | -0.810283 | 1.24E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene45407 | 0.805352 | 1.39E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene45407 | -0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene45407 | -0.804884 | 1.74E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene45407 | -0.822617 | 2.15E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene45407 | -0.82215 | 2.76E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene45407 | -0.822568 | 2.21E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene45407 | -0.8196 | 1.07E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene45407 | -0.826103 | 3.26E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene45407 | -0.823515 | 1.33E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene45407 | -0.804433 | 2.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45407.t1 | MTR_8g009670 | 93.377 | 151 | 8 | 2 | 1 | 151 | 1 | 149 | 1.20e-99 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45407.t1 | AT2G44525 | 68.212 | 151 | 39 | 2 | 1 | 151 | 1 | 142 | 2.82e-70 | 210 |
| MS.gene45407.t1 | AT3G60150 | 66.225 | 151 | 42 | 2 | 1 | 151 | 1 | 142 | 1.69e-67 | 202 |
| MS.gene45407.t1 | AT3G60150 | 66.225 | 151 | 42 | 2 | 1 | 151 | 1 | 142 | 1.86e-67 | 203 |
| MS.gene45407.t1 | AT3G60150 | 67.619 | 105 | 25 | 2 | 1 | 105 | 1 | 96 | 1.78e-43 | 140 |
| MS.gene45407.t1 | AT3G60150 | 67.619 | 105 | 25 | 2 | 1 | 105 | 1 | 96 | 1.78e-43 | 140 |
Find 43 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTTAACCTCTTTGATA+TGG | 0.181140 | 8.3:+79248042 | MS.gene45407:CDS |
| GATACTGGATTTACTGTAAA+TGG | 0.188286 | 8.3:+79245802 | MS.gene45407:CDS |
| TTGCCAGAGATTCTGATTAT+TGG | 0.198809 | 8.3:+79247756 | MS.gene45407:intron |
| CCCATATCAAAGAGGTTAAA+TGG | 0.269632 | 8.3:-79248043 | None:intergenic |
| TATTGTAGGTTTAAAGATAC+TGG | 0.279697 | 8.3:+79245787 | MS.gene45407:intron |
| CAAATTGTCCGCCCTATTCC+AGG | 0.322257 | 8.3:+79247246 | MS.gene45407:CDS |
| ACGGAGAGAGGGCAAGGAAT+TGG | 0.326466 | 8.3:-79245313 | None:intergenic |
| GTGATCTCTGAAAACTTGTT+TGG | 0.331729 | 8.3:-79245880 | None:intergenic |
| CGTTGCGGAGATTGCGTATG+AGG | 0.347381 | 8.3:-79245245 | None:intergenic |
| CTGAACTTAGACGGTTTATT+CGG | 0.349745 | 8.3:+79247808 | MS.gene45407:CDS |
| CCATTTAACCTCTTTGATAT+GGG | 0.358556 | 8.3:+79248043 | MS.gene45407:CDS |
| TGAAAACGGAGTTGGTCTTC+GGG | 0.364676 | 8.3:-79245381 | None:intergenic |
| TTGAAAACGGAGTTGGTCTT+CGG | 0.366792 | 8.3:-79245382 | None:intergenic |
| CGGAGAGAGGGCAAGGAATT+GGG | 0.376081 | 8.3:-79245312 | None:intergenic |
| CGGAGATTGCGTATGAGGTT+TGG | 0.390834 | 8.3:-79245240 | None:intergenic |
| TTTCAGAGATCACTGCTGAT+AGG | 0.414377 | 8.3:+79245890 | MS.gene45407:CDS |
| CGAATAAACCGTCTAAGTTC+AGG | 0.439607 | 8.3:-79247807 | None:intergenic |
| AGACGGTTTATTCGGTCTAC+TGG | 0.478171 | 8.3:+79247816 | MS.gene45407:CDS |
| TTGGAAATTTGATCATGTCT+TGG | 0.480044 | 8.3:+79245854 | MS.gene45407:CDS |
| GAAGGAAGTTTGCTTTGTGT+TGG | 0.489361 | 8.3:+79245835 | MS.gene45407:CDS |
| AGCGCGACGGAGAGAGGGCA+AGG | 0.502973 | 8.3:-79245319 | None:intergenic |
| GAGAAAGCGCGACGGAGAGA+GGG | 0.509976 | 8.3:-79245324 | None:intergenic |
| GAGATTCTGATTATTGGCTG+TGG | 0.521779 | 8.3:+79247762 | MS.gene45407:intron |
| GAAGGTTTGTTGAGCTTGAG+AGG | 0.526353 | 8.3:-79245273 | None:intergenic |
| CTTAAAGTCCCATATCAAAG+AGG | 0.531317 | 8.3:-79248051 | None:intergenic |
| TTCTGATTATTGGCTGTGGA+AGG | 0.533781 | 8.3:+79247766 | MS.gene45407:CDS |
| AGAGAAAGCGCGACGGAGAG+AGG | 0.539475 | 8.3:-79245325 | None:intergenic |
| ATGTTGATCCTGAACTTAGA+CGG | 0.540665 | 8.3:+79247799 | MS.gene45407:CDS |
| AGAGTAGGTACCCTTGAAAA+CGG | 0.541466 | 8.3:-79245395 | None:intergenic |
| GTAAATGGAGTTGAATATGA+AGG | 0.545158 | 8.3:+79245817 | MS.gene45407:CDS |
| GGATGATTGTTATGTGGAGA+AGG | 0.556995 | 8.3:-79245291 | None:intergenic |
| GCTTGAGAGGTTGTTCGTTG+CGG | 0.572374 | 8.3:-79245260 | None:intergenic |
| GAATTGGGATGATTGTTATG+TGG | 0.592998 | 8.3:-79245297 | None:intergenic |
| CCTCAGGACATTGGTACAGA+GGG | 0.596284 | 8.3:+79248010 | MS.gene45407:intron |
| GGTACCCTTGAAAACGGAGT+TGG | 0.609702 | 8.3:-79245389 | None:intergenic |
| GAAAACGGAGTTGGTCTTCG+GGG | 0.618386 | 8.3:-79245380 | None:intergenic |
| GAAGTTAGAAGCTGTTGACT+CGG | 0.627184 | 8.3:+79247842 | MS.gene45407:CDS |
| ACCTCAGGACATTGGTACAG+AGG | 0.643279 | 8.3:+79248009 | MS.gene45407:intron |
| TACATGGTACCTCAGGACAT+TGG | 0.646782 | 8.3:+79248001 | MS.gene45407:intron |
| CGTATAAAGAGAAAGCGCGA+CGG | 0.654869 | 8.3:-79245332 | None:intergenic |
| TCAGGACATTGGTACAGAGG+GGG | 0.689796 | 8.3:+79248012 | MS.gene45407:intron |
| AAATCCAACCTGGAATAGGG+CGG | 0.690412 | 8.3:-79247254 | None:intergenic |
| CTCAGGACATTGGTACAGAG+GGG | 0.717525 | 8.3:+79248011 | MS.gene45407:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATAATGCA+AGG | - | chr8.3:79247911-79247930 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTTAGTTTTTATA+TGG | + | chr8.3:79245492-79245511 | MS.gene45407:intron | 10.0% |
| !!! | GATTTTTTTATTTAATGTAA+TGG | + | chr8.3:79245690-79245709 | MS.gene45407:intron | 10.0% |
| !! | AAAAGACTTTAATGTAAAAT+GGG | + | chr8.3:79245524-79245543 | MS.gene45407:intron | 15.0% |
| !! | AAATAGAAATGATTATTATG+TGG | - | chr8.3:79245433-79245452 | None:intergenic | 15.0% |
| !! | ATGATCATATTAAAATATCA+TGG | - | chr8.3:79246752-79246771 | None:intergenic | 15.0% |
| !! | TAGTTTCTAAATTATAAGTT+AGG | + | chr8.3:79247482-79247501 | MS.gene45407:intron | 15.0% |
| !!! | AATATTTTTCTTTACATTGT+TGG | + | chr8.3:79247936-79247955 | MS.gene45407:intron | 15.0% |
| !!! | AATTCAAATCATTTTGATAA+GGG | - | chr8.3:79246448-79246467 | None:intergenic | 15.0% |
| !!! | AATTTAAAACCATTTAAAAG+TGG | - | chr8.3:79246020-79246039 | None:intergenic | 15.0% |
| !!! | ATATTTTTCTTTACATTGTT+GGG | + | chr8.3:79247937-79247956 | MS.gene45407:intron | 15.0% |
| !!! | CTATAAAATGTTTCTAAAAA+AGG | - | chr8.3:79246798-79246817 | None:intergenic | 15.0% |
| !!! | TTTTACAAATATACTCTATA+AGG | - | chr8.3:79245964-79245983 | None:intergenic | 15.0% |
| !! | AAAAAAATAGGATTTGGATT+TGG | - | chr8.3:79247041-79247060 | None:intergenic | 20.0% |
| !! | AATATACTCTATAAGGTAAA+AGG | - | chr8.3:79245957-79245976 | None:intergenic | 20.0% |
| !! | ATCTTGAATTGATATCTTAT+TGG | + | chr8.3:79247187-79247206 | MS.gene45407:intron | 20.0% |
| !! | ATTCAAATAGGAAAAATCAA+AGG | - | chr8.3:79247349-79247368 | None:intergenic | 20.0% |
| !! | CAAACATTAAAGAAAACAAT+TGG | - | chr8.3:79245987-79246006 | None:intergenic | 20.0% |
| !! | CAAACTCTTAAGAAAATTAT+AGG | - | chr8.3:79246627-79246646 | None:intergenic | 20.0% |
| !! | GAAAAGACTTTAATGTAAAA+TGG | + | chr8.3:79245523-79245542 | MS.gene45407:intron | 20.0% |
| !! | GTAGAAAAGATAATTATACA+CGG | - | chr8.3:79247582-79247601 | None:intergenic | 20.0% |
| !! | TAGAAAAGATAATTATACAC+GGG | - | chr8.3:79247581-79247600 | None:intergenic | 20.0% |
| !! | TAGATCAAAATCAATTTGAT+AGG | - | chr8.3:79247710-79247729 | None:intergenic | 20.0% |
| !! | TTACACAAAAAAATAGGATT+TGG | - | chr8.3:79247047-79247066 | None:intergenic | 20.0% |
| !!! | AATTTTCTTAAGAGTTTGTT+TGG | + | chr8.3:79246629-79246648 | MS.gene45407:intron | 20.0% |
| !!! | ATAAAGTTTTGTAATGTGTT+GGG | + | chr8.3:79246557-79246576 | MS.gene45407:intron | 20.0% |
| !!! | ATTTTCTTAAGAGTTTGTTT+GGG | + | chr8.3:79246630-79246649 | MS.gene45407:intron | 20.0% |
| !!! | CAATTCAAATCATTTTGATA+AGG | - | chr8.3:79246449-79246468 | None:intergenic | 20.0% |
| !!! | TAAAGTGGAAATTTTATCTT+GGG | + | chr8.3:79246299-79246318 | MS.gene45407:intron | 20.0% |
| !!! | TAAATGGTTTTAAATTATCG+TGG | + | chr8.3:79246024-79246043 | MS.gene45407:intron | 20.0% |
| !!! | TATTTTTCTTTACATTGTTG+GGG | + | chr8.3:79247938-79247957 | MS.gene45407:intron | 20.0% |
| !!! | TTAAAGTGGAAATTTTATCT+TGG | + | chr8.3:79246298-79246317 | MS.gene45407:intron | 20.0% |
| ! | AACGAGCTATTATTATCAAA+AGG | + | chr8.3:79246247-79246266 | MS.gene45407:intron | 25.0% |
| ! | AATCAAATATCTTCTAGATC+TGG | + | chr8.3:79246191-79246210 | MS.gene45407:intron | 25.0% |
| ! | AATCTAAGTAAAACAGTACA+TGG | + | chr8.3:79247985-79248004 | MS.gene45407:intron | 25.0% |
| ! | ACTAGTTAAGGAGTAAAAAA+TGG | - | chr8.3:79246392-79246411 | None:intergenic | 25.0% |
| ! | ATAAATAACACAAGCAGATA+CGG | - | chr8.3:79247169-79247188 | None:intergenic | 25.0% |
| ! | ATACAGTGAAATATTTACCA+TGG | - | chr8.3:79247078-79247097 | None:intergenic | 25.0% |
| ! | ATACGAAAATCTCTATTCAA+AGG | - | chr8.3:79246515-79246534 | None:intergenic | 25.0% |
| ! | ATTCAAAACAACTAGCTAAA+AGG | - | chr8.3:79247633-79247652 | None:intergenic | 25.0% |
| ! | ATTTAGAAACTACAAGTACA+TGG | - | chr8.3:79247474-79247493 | None:intergenic | 25.0% |
| ! | CAACACATTACAAAACTTTA+TGG | - | chr8.3:79246558-79246577 | None:intergenic | 25.0% |
| ! | CCAATAATTGTATTGTTGAA+GGG | + | chr8.3:79245609-79245628 | MS.gene45407:intron | 25.0% |
| ! | GAATCTTGTCTTATGTTATT+TGG | - | chr8.3:79246966-79246985 | None:intergenic | 25.0% |
| ! | GAGTGATTACACAAAAAAAT+AGG | - | chr8.3:79247053-79247072 | None:intergenic | 25.0% |
| ! | TAACATGATTGTTTCGATAT+GGG | + | chr8.3:79245635-79245654 | MS.gene45407:intron | 25.0% |
| ! | TACGAAAATCTCTATTCAAA+GGG | - | chr8.3:79246514-79246533 | None:intergenic | 25.0% |
| ! | TATTGTAGGTTTAAAGATAC+TGG | + | chr8.3:79245787-79245806 | MS.gene45407:intron | 25.0% |
| ! | TGATTATTATGTGGAATGAA+AGG | - | chr8.3:79245424-79245443 | None:intergenic | 25.0% |
| ! | TTAACATGATTGTTTCGATA+TGG | + | chr8.3:79245634-79245653 | MS.gene45407:intron | 25.0% |
| ! | TTCAAAACAACTAGCTAAAA+GGG | - | chr8.3:79247632-79247651 | None:intergenic | 25.0% |
| ! | TTTAGAAACTACAAGTACAT+GGG | - | chr8.3:79247473-79247492 | None:intergenic | 25.0% |
| !! | ACTGATTTCAATGATATTGT+AGG | + | chr8.3:79245773-79245792 | MS.gene45407:intron | 25.0% |
| !! | ATACTCATTTTATACCACTT+TGG | - | chr8.3:79246482-79246501 | None:intergenic | 25.0% |
| !! | TACTCATTTTATACCACTTT+GGG | - | chr8.3:79246481-79246500 | None:intergenic | 25.0% |
| !! | TAGTTTTTATATGGTGTTCA+AGG | + | chr8.3:79245501-79245520 | MS.gene45407:intron | 25.0% |
| !! | TTCATTTTGTATATCACCAT+TGG | + | chr8.3:79246075-79246094 | MS.gene45407:intron | 25.0% |
| !! | TTCTTTCCATTTTGCAAAAT+GGG | + | chr8.3:79245453-79245472 | MS.gene45407:intron | 25.0% |
| !! | TTTCTTTCCATTTTGCAAAA+TGG | + | chr8.3:79245452-79245471 | MS.gene45407:intron | 25.0% |
| !!! | CATAAAGTTTTGTAATGTGT+TGG | + | chr8.3:79246556-79246575 | MS.gene45407:intron | 25.0% |
| !!! | GATCTATTTTAACTGAAACT+GGG | + | chr8.3:79247724-79247743 | MS.gene45407:intron | 25.0% |
| !!! | GTATCGATTAACAAAATTGT+TGG | + | chr8.3:79246224-79246243 | MS.gene45407:intron | 25.0% |
| !!! | TGATCTATTTTAACTGAAAC+TGG | + | chr8.3:79247723-79247742 | MS.gene45407:intron | 25.0% |
| !!! | TGCTAAGATCATTGTTTTAT+CGG | + | chr8.3:79245723-79245742 | MS.gene45407:intron | 25.0% |
| !!! | TTTCTAGTTTTCCCTTTTTT+GGG | + | chr8.3:79247308-79247327 | MS.gene45407:intron | 25.0% |
| AACATGATTGTTTCGATATG+GGG | + | chr8.3:79245636-79245655 | MS.gene45407:intron | 30.0% | |
| AATAACCATATTCGTGACAT+TGG | - | chr8.3:79247529-79247548 | None:intergenic | 30.0% | |
| ACAAGAATTGAATGTGTCAT+TGG | + | chr8.3:79247125-79247144 | MS.gene45407:intron | 30.0% | |
| ACCATTTAACCTCTTTGATA+TGG | + | chr8.3:79248042-79248061 | MS.gene45407:CDS | 30.0% | |
| ATAACCATATTCGTGACATT+GGG | - | chr8.3:79247528-79247547 | None:intergenic | 30.0% | |
| CCATTTAACCTCTTTGATAT+GGG | + | chr8.3:79248043-79248062 | MS.gene45407:CDS | 30.0% | |
| CCCTTCAACAATACAATTAT+TGG | - | chr8.3:79245612-79245631 | None:intergenic | 30.0% | |
| CTTAATCTCTCTTAATGGTA+TGG | + | chr8.3:79246601-79246620 | MS.gene45407:intron | 30.0% | |
| GATACTGGATTTACTGTAAA+TGG | + | chr8.3:79245802-79245821 | MS.gene45407:CDS | 30.0% | |
| GCCAATAATTGTATTGTTGA+AGG | + | chr8.3:79245608-79245627 | MS.gene45407:intron | 30.0% | |
| GTAAATGGAGTTGAATATGA+AGG | + | chr8.3:79245817-79245836 | MS.gene45407:CDS | 30.0% | |
| TACCATTAAGAGAGATTAAG+AGG | - | chr8.3:79246601-79246620 | None:intergenic | 30.0% | |
| TACCTCTTAATCTCTCTTAA+TGG | + | chr8.3:79246596-79246615 | MS.gene45407:intron | 30.0% | |
| TTACTTTCTCATTTGAGAAG+TGG | + | chr8.3:79247424-79247443 | MS.gene45407:intron | 30.0% | |
| TTCCACTTTAAACTTCTTAG+CGG | - | chr8.3:79246289-79246308 | None:intergenic | 30.0% | |
| TTCCTATTTGAATGCTCTTT+GGG | + | chr8.3:79247356-79247375 | MS.gene45407:intron | 30.0% | |
| TTGGAAATTTGATCATGTCT+TGG | + | chr8.3:79245854-79245873 | MS.gene45407:CDS | 30.0% | |
| TTTCCTATTTGAATGCTCTT+TGG | + | chr8.3:79247355-79247374 | MS.gene45407:intron | 30.0% | |
| ! | AAACAACCCATTTTGCAAAA+TGG | - | chr8.3:79245462-79245481 | None:intergenic | 30.0% |
| ! | AAGAGGTAAACTGTCTATTT+TGG | - | chr8.3:79246584-79246603 | None:intergenic | 30.0% |
| ! | ATTGTTTTCAAAACCCAAAG+TGG | + | chr8.3:79246465-79246484 | MS.gene45407:intron | 30.0% |
| ! | TTTGGAATGCAATCATTAGA+CGG | - | chr8.3:79247023-79247042 | None:intergenic | 30.0% |
| !! | AAAAGTACCTTTAGAAGTAC+TGG | - | chr8.3:79246934-79246953 | None:intergenic | 30.0% |
| !!! | ATACTTCTGCCACTTTTAAA+TGG | + | chr8.3:79246008-79246027 | MS.gene45407:intron | 30.0% |
| !!! | CTTTCTAGTTTTCCCTTTTT+TGG | + | chr8.3:79247307-79247326 | MS.gene45407:intron | 30.0% |
| !!! | TTCTAGTTTTCCCTTTTTTG+GGG | + | chr8.3:79247309-79247328 | MS.gene45407:intron | 30.0% |
| AAACATAATGAGCATAACGC+AGG | - | chr8.3:79247667-79247686 | None:intergenic | 35.0% | |
| AACATAATGAGCATAACGCA+GGG | - | chr8.3:79247666-79247685 | None:intergenic | 35.0% | |
| AAGGGAAAACTAGAAAGTCA+AGG | - | chr8.3:79247304-79247323 | None:intergenic | 35.0% | |
| ATAGAATTGCACCCCAAAAA+AGG | - | chr8.3:79247323-79247342 | None:intergenic | 35.0% | |
| ATGTTGATCCTGAACTTAGA+CGG | + | chr8.3:79247799-79247818 | MS.gene45407:CDS | 35.0% | |
| CCCATATCAAAGAGGTTAAA+TGG | - | chr8.3:79248046-79248065 | None:intergenic | 35.0% | |
| CTGAACTTAGACGGTTTATT+CGG | + | chr8.3:79247808-79247827 | MS.gene45407:CDS | 35.0% | |
| GAAAAATCCAACCTGGAATA+GGG | - | chr8.3:79247260-79247279 | None:intergenic | 35.0% | |
| GAATTAGCATCATCATTAGC+TGG | + | chr8.3:79246168-79246187 | MS.gene45407:intron | 35.0% | |
| GAATTGGGATGATTGTTATG+TGG | - | chr8.3:79245300-79245319 | None:intergenic | 35.0% | |
| GATAATTATACACGGGAAAG+TGG | - | chr8.3:79247574-79247593 | None:intergenic | 35.0% | |
| TAGAATTGCACCCCAAAAAA+GGG | - | chr8.3:79247322-79247341 | None:intergenic | 35.0% | |
| TAGTTGTTGCTGGGATTTAA+TGG | + | chr8.3:79245749-79245768 | MS.gene45407:intron | 35.0% | |
| TCCTATTTGAATGCTCTTTG+GGG | + | chr8.3:79247357-79247376 | MS.gene45407:intron | 35.0% | |
| TGAAAAATCCAACCTGGAAT+AGG | - | chr8.3:79247261-79247280 | None:intergenic | 35.0% | |
| TTGCCAGAGATTCTGATTAT+TGG | + | chr8.3:79247756-79247775 | MS.gene45407:intron | 35.0% | |
| TTGCTCATTCTCAAAACCAA+TGG | - | chr8.3:79246094-79246113 | None:intergenic | 35.0% | |
| TTGGAATGCAATCATTAGAC+GGG | - | chr8.3:79247022-79247041 | None:intergenic | 35.0% | |
| TTTGTGTAATCACTCATCCA+TGG | + | chr8.3:79247058-79247077 | MS.gene45407:intron | 35.0% | |
| ! | AAGAGGAGTATACCAAATTG+AGG | - | chr8.3:79246907-79246926 | None:intergenic | 35.0% |
| ! | AGAGGAGTATACCAAATTGA+GGG | - | chr8.3:79246906-79246925 | None:intergenic | 35.0% |
| ! | GTGATCTCTGAAAACTTGTT+TGG | - | chr8.3:79245883-79245902 | None:intergenic | 35.0% |
| ! | TCTTAAGAGTTTGTTTGGGA+GGG | + | chr8.3:79246634-79246653 | MS.gene45407:intron | 35.0% |
| ! | TTCTTAAGAGTTTGTTTGGG+AGG | + | chr8.3:79246633-79246652 | MS.gene45407:intron | 35.0% |
| !!! | GATTTTGGAAGGTTTTAGAG+GGG | + | chr8.3:79246657-79246676 | MS.gene45407:intron | 35.0% |
| !!! | GGATTTTGGAAGGTTTTAGA+GGG | + | chr8.3:79246656-79246675 | MS.gene45407:intron | 35.0% |
| !!! | TGGTTTTGAGAATGAGCAAA+TGG | + | chr8.3:79246095-79246114 | MS.gene45407:intron | 35.0% |
| AAAACAGTACATGGTACCTC+AGG | + | chr8.3:79247994-79248013 | MS.gene45407:intron | 40.0% | |
| AGAGTAGGTACCCTTGAAAA+CGG | - | chr8.3:79245398-79245417 | None:intergenic | 40.0% | |
| ATAAGTTAGGACCCTAAAGC+TGG | + | chr8.3:79247495-79247514 | MS.gene45407:intron | 40.0% | |
| ATTGTTTCGATATGGGGTCA+AGG | + | chr8.3:79245642-79245661 | MS.gene45407:intron | 40.0% | |
| CAAAGCTGAAAAATCCAACC+TGG | - | chr8.3:79247267-79247286 | None:intergenic | 40.0% | |
| CAGCCAATAATCAGAATCTC+TGG | - | chr8.3:79247762-79247781 | None:intergenic | 40.0% | |
| CGAATAAACCGTCTAAGTTC+AGG | - | chr8.3:79247810-79247829 | None:intergenic | 40.0% | |
| CTATTGGACTACCCTCAATT+TGG | + | chr8.3:79246892-79246911 | MS.gene45407:intron | 40.0% | |
| CTTACCACCAGTACTTCTAA+AGG | + | chr8.3:79246924-79246943 | MS.gene45407:intron | 40.0% | |
| GAATCCCAATGTCACGAATA+TGG | + | chr8.3:79247521-79247540 | MS.gene45407:intron | 40.0% | |
| GCAATCATTAGACGGGAAAT+TGG | - | chr8.3:79247015-79247034 | None:intergenic | 40.0% | |
| GGATGATTGTTATGTGGAGA+AGG | - | chr8.3:79245294-79245313 | None:intergenic | 40.0% | |
| TAACTACACCTACTGCGAAA+AGG | - | chr8.3:79246141-79246160 | None:intergenic | 40.0% | |
| TAGTCCAATAGTTAGAGGTG+AGG | - | chr8.3:79246883-79246902 | None:intergenic | 40.0% | |
| TATCGGCAATAGTTGTTGCT+GGG | + | chr8.3:79245740-79245759 | MS.gene45407:intron | 40.0% | |
| TCTTCCTCACCTCTAACTAT+TGG | + | chr8.3:79246876-79246895 | MS.gene45407:intron | 40.0% | |
| TGCCGCTAAGAAGTTTAAAG+TGG | + | chr8.3:79246284-79246303 | MS.gene45407:intron | 40.0% | |
| TGGAATGAAAGGAAGAGAGT+AGG | - | chr8.3:79245413-79245432 | None:intergenic | 40.0% | |
| TTAGAGGTGAGGAAGACTAA+TGG | - | chr8.3:79246872-79246891 | None:intergenic | 40.0% | |
| TTATCGGCAATAGTTGTTGC+TGG | + | chr8.3:79245739-79245758 | MS.gene45407:intron | 40.0% | |
| TTTCAGAGATCACTGCTGAT+AGG | + | chr8.3:79245890-79245909 | MS.gene45407:CDS | 40.0% | |
| ! | AAGACCAACTCCGTTTTCAA+GGG | + | chr8.3:79245385-79245404 | MS.gene45407:CDS | 40.0% |
| ! | CTTAAGAGTTTGTTTGGGAG+GGG | + | chr8.3:79246635-79246654 | MS.gene45407:intron | 40.0% |
| ! | GAAGGAAGTTTGCTTTGTGT+TGG | + | chr8.3:79245835-79245854 | MS.gene45407:CDS | 40.0% |
| ! | GAAGTTAGAAGCTGTTGACT+CGG | + | chr8.3:79247842-79247861 | MS.gene45407:CDS | 40.0% |
| ! | GAGATTCTGATTATTGGCTG+TGG | + | chr8.3:79247762-79247781 | MS.gene45407:intron | 40.0% |
| ! | TAATCAAGCCTTTTCGCAGT+AGG | + | chr8.3:79246130-79246149 | MS.gene45407:intron | 40.0% |
| ! | TTCTGATTATTGGCTGTGGA+AGG | + | chr8.3:79247766-79247785 | MS.gene45407:CDS | 40.0% |
| !! | AGTACCTTTAGAAGTACTGG+TGG | - | chr8.3:79246931-79246950 | None:intergenic | 40.0% |
| !! | GGGATTTTGGAAGGTTTTAG+AGG | + | chr8.3:79246655-79246674 | MS.gene45407:intron | 40.0% |
| !! | TTAGAAGTACTGGTGGTAAG+AGG | - | chr8.3:79246924-79246943 | None:intergenic | 40.0% |
| !! | TTGAAAACGGAGTTGGTCTT+CGG | - | chr8.3:79245385-79245404 | None:intergenic | 40.0% |
| AAATCCAACCTGGAATAGGG+CGG | - | chr8.3:79247257-79247276 | None:intergenic | 45.0% | |
| ACTCCTTAACTAGTGCCCTT+AGG | + | chr8.3:79246398-79246417 | MS.gene45407:intron | 45.0% | |
| AGACGGTTTATTCGGTCTAC+TGG | + | chr8.3:79247816-79247835 | MS.gene45407:CDS | 45.0% | |
| AGGTGAGGAAGACTAATGGA+AGG | - | chr8.3:79246868-79246887 | None:intergenic | 45.0% | |
| CAGTAATCCAAGAGAGAGAG+AGG | - | chr8.3:79247608-79247627 | None:intergenic | 45.0% | |
| CTACTATCTTCTCTACCGTG+AGG | + | chr8.3:79246985-79247004 | MS.gene45407:intron | 45.0% | |
| CTCCTTAACTAGTGCCCTTA+GGG | + | chr8.3:79246399-79246418 | MS.gene45407:intron | 45.0% | |
| GAGGGTAGTCCAATAGTTAG+AGG | - | chr8.3:79246888-79246907 | None:intergenic | 45.0% | |
| GGTGAGGAAGACTAATGGAA+GGG | - | chr8.3:79246867-79246886 | None:intergenic | 45.0% | |
| GTGAGGAAGACTAATGGAAG+GGG | - | chr8.3:79246866-79246885 | None:intergenic | 45.0% | |
| TACATGGTACCTCAGGACAT+TGG | + | chr8.3:79248001-79248020 | MS.gene45407:intron | 45.0% | |
| TGAGGAAGACTAATGGAAGG+GGG | - | chr8.3:79246865-79246884 | None:intergenic | 45.0% | |
| TGGGATTCTCACCAGCTTTA+GGG | - | chr8.3:79247509-79247528 | None:intergenic | 45.0% | |
| TTGGGATTCTCACCAGCTTT+AGG | - | chr8.3:79247510-79247529 | None:intergenic | 45.0% | |
| ! | CGTATAAAGAGAAAGCGCGA+CGG | - | chr8.3:79245335-79245354 | None:intergenic | 45.0% |
| ! | GAAGACCAACTCCGTTTTCA+AGG | + | chr8.3:79245384-79245403 | MS.gene45407:CDS | 45.0% |
| ! | GTTTGTTTGGGAGGGGATTT+TGG | + | chr8.3:79246642-79246661 | MS.gene45407:intron | 45.0% |
| !! | GAAGGTTTGTTGAGCTTGAG+AGG | - | chr8.3:79245276-79245295 | None:intergenic | 45.0% |
| !! | GCCCCAAAGAGCATTCAAAT+AGG | - | chr8.3:79247361-79247380 | None:intergenic | 45.0% |
| !! | TGAAAACGGAGTTGGTCTTC+GGG | - | chr8.3:79245384-79245403 | None:intergenic | 45.0% |
| !!! | TTGGAAGGTTTTAGAGGGGA+GGG | + | chr8.3:79246661-79246680 | MS.gene45407:intron | 45.0% |
| !!! | TTTGGAAGGTTTTAGAGGGG+AGG | + | chr8.3:79246660-79246679 | MS.gene45407:intron | 45.0% |
| !!! | ATTTTTTTATTTAATGTAAT+GGG | + | chr8.3:79245691-79245710 | MS.gene45407:intron | 5.0% |
| AATGGAAGGGGGGTTTCAGA+CGG | - | chr8.3:79246854-79246873 | None:intergenic | 50.0% | |
| ACATTGGTACAGAGGGGGAA+TGG | + | chr8.3:79248017-79248036 | MS.gene45407:CDS | 50.0% | |
| ACCTCAGGACATTGGTACAG+AGG | + | chr8.3:79248009-79248028 | MS.gene45407:intron | 50.0% | |
| CAAATTGTCCGCCCTATTCC+AGG | + | chr8.3:79247246-79247265 | MS.gene45407:CDS | 50.0% | |
| CATTGGTACAGAGGGGGAAT+GGG | + | chr8.3:79248018-79248037 | MS.gene45407:CDS | 50.0% | |
| CCTCAGGACATTGGTACAGA+GGG | + | chr8.3:79248010-79248029 | MS.gene45407:intron | 50.0% | |
| CGGAGATTGCGTATGAGGTT+TGG | - | chr8.3:79245243-79245262 | None:intergenic | 50.0% | |
| CGGGAAATTGGATAGCCTCA+CGG | - | chr8.3:79247003-79247022 | None:intergenic | 50.0% | |
| CTACTGTCCTCTCTCTCTCT+TGG | + | chr8.3:79247598-79247617 | MS.gene45407:intron | 50.0% | |
| CTCAGGACATTGGTACAGAG+GGG | + | chr8.3:79248011-79248030 | MS.gene45407:intron | 50.0% | |
| GAGGAAGACTAATGGAAGGG+GGG | - | chr8.3:79246864-79246883 | None:intergenic | 50.0% | |
| GATATGGGGTCAAGGAAGAG+AGG | + | chr8.3:79245650-79245669 | MS.gene45407:intron | 50.0% | |
| GCTTGAGAGGTTGTTCGTTG+CGG | - | chr8.3:79245263-79245282 | None:intergenic | 50.0% | |
| GGTACCCTTGAAAACGGAGT+TGG | - | chr8.3:79245392-79245411 | None:intergenic | 50.0% | |
| TCAGGACATTGGTACAGAGG+GGG | + | chr8.3:79248012-79248031 | MS.gene45407:intron | 50.0% | |
| ! | GTTTGGGAGGGGATTTTGGA+AGG | + | chr8.3:79246646-79246665 | MS.gene45407:intron | 50.0% |
| !! | GAAAACGGAGTTGGTCTTCG+GGG | - | chr8.3:79245383-79245402 | None:intergenic | 50.0% |
| !! | TGCCCTAAGGGCACTAGTTA+AGG | - | chr8.3:79246404-79246423 | None:intergenic | 50.0% |
| !! | TTTAGAGGGGAGGGTTTTGG+AGG | + | chr8.3:79246670-79246689 | MS.gene45407:intron | 50.0% |
| !!! | GGTTTTAGAGGGGAGGGTTT+TGG | + | chr8.3:79246667-79246686 | MS.gene45407:intron | 50.0% |
| !!! | TTAGAGGGGAGGGTTTTGGA+GGG | + | chr8.3:79246671-79246690 | MS.gene45407:intron | 50.0% |
| ACAAGTGCCCTTGTGCCCTA+AGG | - | chr8.3:79246417-79246436 | None:intergenic | 55.0% | |
| ACGGAGAGAGGGCAAGGAAT+TGG | - | chr8.3:79245316-79245335 | None:intergenic | 55.0% | |
| ACTAGTGCCCTTAGGGCACA+AGG | + | chr8.3:79246406-79246425 | MS.gene45407:intron | 55.0% | |
| ATGGAAGGGGGGTTTCAGAC+GGG | - | chr8.3:79246853-79246872 | None:intergenic | 55.0% | |
| CAAGTGCCCTTGTGCCCTAA+GGG | - | chr8.3:79246416-79246435 | None:intergenic | 55.0% | |
| CCCTCTGTACCAATGTCCTG+AGG | - | chr8.3:79248013-79248032 | None:intergenic | 55.0% | |
| CGGAGAGAGGGCAAGGAATT+GGG | - | chr8.3:79245315-79245334 | None:intergenic | 55.0% | |
| CGTTGCGGAGATTGCGTATG+AGG | - | chr8.3:79245248-79245267 | None:intergenic | 55.0% | |
| CTAGTGCCCTTAGGGCACAA+GGG | + | chr8.3:79246407-79246426 | MS.gene45407:intron | 55.0% | |
| TTGTCCGCCCTATTCCAGGT+TGG | + | chr8.3:79247250-79247269 | MS.gene45407:intron | 55.0% | |
| AAGGGGGGTTTCAGACGGGA+GGG | - | chr8.3:79246849-79246868 | None:intergenic | 60.0% | |
| ! | AGAGAAAGCGCGACGGAGAG+AGG | - | chr8.3:79245328-79245347 | None:intergenic | 60.0% |
| ! | GAGAAAGCGCGACGGAGAGA+GGG | - | chr8.3:79245327-79245346 | None:intergenic | 60.0% |
| GAAGGGGGGTTTCAGACGGG+AGG | - | chr8.3:79246850-79246869 | None:intergenic | 65.0% | |
| AGCGCGACGGAGAGAGGGCA+AGG | - | chr8.3:79245322-79245341 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79245207 | 79248072 | 79245207 | ID=MS.gene45407 |
| chr8.3 | mRNA | 79245207 | 79248072 | 79245207 | ID=MS.gene45407.t1;Parent=MS.gene45407 |
| chr8.3 | exon | 79245207 | 79245406 | 79245207 | ID=MS.gene45407.t1.exon1;Parent=MS.gene45407.t1 |
| chr8.3 | CDS | 79245207 | 79245406 | 79245207 | ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1 |
| chr8.3 | exon | 79245795 | 79245911 | 79245795 | ID=MS.gene45407.t1.exon2;Parent=MS.gene45407.t1 |
| chr8.3 | CDS | 79245795 | 79245911 | 79245795 | ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1 |
| chr8.3 | exon | 79247233 | 79247267 | 79247233 | ID=MS.gene45407.t1.exon3;Parent=MS.gene45407.t1 |
| chr8.3 | CDS | 79247233 | 79247267 | 79247233 | ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1 |
| chr8.3 | exon | 79247763 | 79247863 | 79247763 | ID=MS.gene45407.t1.exon4;Parent=MS.gene45407.t1 |
| chr8.3 | CDS | 79247763 | 79247863 | 79247763 | ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1 |
| chr8.3 | exon | 79248016 | 79248072 | 79248016 | ID=MS.gene45407.t1.exon5;Parent=MS.gene45407.t1 |
| chr8.3 | CDS | 79248016 | 79248072 | 79248016 | ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1 |
| Gene Sequence |
| Protein sequence |
