AlfalfaGEDB | MS.gene45407

M. sativa cultivar XinJiangDaYe / MS.gene45407

KEGG: K09008
GO: -
PFAM: PF04430.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45407.t1	XP_013443964.1	93.4	151	8	2	1	151	1	149	9.30E-72	279.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45407.t1	Q6DFN1	31.0	84	58	0	68	151	68	151	5.1e-10	65.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45407.t1	B7FHB1	93.4	151	8	2	1	151	1	149	6.7e-72	279.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene45407	-0.832459	9.34E-56	-1.69E-46
MS.gene04917	MS.gene45407	-0.827557	1.46E-54	-1.69E-46
MS.gene050361	MS.gene45407	-0.811963	5.38E-51	-1.69E-46
MS.gene050623	MS.gene45407	0.805522	1.28E-49	-1.69E-46
MS.gene050629	MS.gene45407	0.853859	1.81E-61	-1.69E-46
MS.gene050762	MS.gene45407	-0.846747	1.79E-59	-1.69E-46
MS.gene050763	MS.gene45407	-0.847477	1.13E-59	-1.69E-46
MS.gene050826	MS.gene45407	-0.800966	1.12E-48	-1.69E-46
MS.gene054379	MS.gene45407	-0.840737	7.26E-58	-1.69E-46
MS.gene055311	MS.gene45407	-0.810283	1.24E-50	-1.69E-46

Showing 1 to 10 of 20 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45407.t1	MTR_8g009670	93.377	151	8	2	1	151	1	149	1.20e-99	285

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45407.t1	AT2G44525	68.212	151	39	2	1	151	1	142	2.82e-70	210
MS.gene45407.t1	AT3G60150	66.225	151	42	2	1	151	1	142	1.69e-67	202
MS.gene45407.t1	AT3G60150	66.225	151	42	2	1	151	1	142	1.86e-67	203
MS.gene45407.t1	AT3G60150	67.619	105	25	2	1	105	1	96	1.78e-43	140
MS.gene45407.t1	AT3G60150	67.619	105	25	2	1	105	1	96	1.78e-43	140

Showing 1 to 5 of 5 entries

Previous1Next

Find 43 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAACCTGGAATAGGG+CGG	0.690412	8.3:-79247254	None:intergenic
ACCATTTAACCTCTTTGATA+TGG	0.181140	8.3:+79248042	MS.gene45407:CDS
ACCTCAGGACATTGGTACAG+AGG	0.643279	8.3:+79248009	MS.gene45407:intron
ACGGAGAGAGGGCAAGGAAT+TGG	0.326466	8.3:-79245313	None:intergenic
AGACGGTTTATTCGGTCTAC+TGG	0.478171	8.3:+79247816	MS.gene45407:CDS
AGAGAAAGCGCGACGGAGAG+AGG	0.539475	8.3:-79245325	None:intergenic
AGAGTAGGTACCCTTGAAAA+CGG	0.541466	8.3:-79245395	None:intergenic
AGCGCGACGGAGAGAGGGCA+AGG	0.502973	8.3:-79245319	None:intergenic
ATGTTGATCCTGAACTTAGA+CGG	0.540665	8.3:+79247799	MS.gene45407:CDS
CAAATTGTCCGCCCTATTCC+AGG	0.322257	8.3:+79247246	MS.gene45407:CDS

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATGATTGTTTCGATATG+GGG	+	chr8.3:79245636-79245655	MS.gene45407:intron	30.0%
AATAACCATATTCGTGACAT+TGG	-	chr8.3:79247529-79247548	None:intergenic	30.0%
ACAAGAATTGAATGTGTCAT+TGG	+	chr8.3:79247125-79247144	MS.gene45407:intron	30.0%
ACCATTTAACCTCTTTGATA+TGG	+	chr8.3:79248042-79248061	MS.gene45407:CDS	30.0%
ATAACCATATTCGTGACATT+GGG	-	chr8.3:79247528-79247547	None:intergenic	30.0%
CCATTTAACCTCTTTGATAT+GGG	+	chr8.3:79248043-79248062	MS.gene45407:CDS	30.0%
CCCTTCAACAATACAATTAT+TGG	-	chr8.3:79245612-79245631	None:intergenic	30.0%
CTTAATCTCTCTTAATGGTA+TGG	+	chr8.3:79246601-79246620	MS.gene45407:intron	30.0%
GATACTGGATTTACTGTAAA+TGG	+	chr8.3:79245802-79245821	MS.gene45407:CDS	30.0%
GCCAATAATTGTATTGTTGA+AGG	+	chr8.3:79245608-79245627	MS.gene45407:intron	30.0%

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	79245207	79248072	79245207	ID=MS.gene45407
chr8.3	mRNA	79245207	79248072	79245207	ID=MS.gene45407.t1;Parent=MS.gene45407
chr8.3	exon	79245207	79245406	79245207	ID=MS.gene45407.t1.exon1;Parent=MS.gene45407.t1
chr8.3	CDS	79245207	79245406	79245207	ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1
chr8.3	exon	79245795	79245911	79245795	ID=MS.gene45407.t1.exon2;Parent=MS.gene45407.t1
chr8.3	CDS	79245795	79245911	79245795	ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1
chr8.3	exon	79247233	79247267	79247233	ID=MS.gene45407.t1.exon3;Parent=MS.gene45407.t1
chr8.3	CDS	79247233	79247267	79247233	ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1
chr8.3	exon	79247763	79247863	79247763	ID=MS.gene45407.t1.exon4;Parent=MS.gene45407.t1
chr8.3	CDS	79247763	79247863	79247763	ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1
chr8.3	exon	79248016	79248072	79248016	ID=MS.gene45407.t1.exon5;Parent=MS.gene45407.t1
chr8.3	CDS	79248016	79248072	79248016	ID=cds.MS.gene45407.t1;Parent=MS.gene45407.t1

Gene Sequence

>MS.gene45407

ATGGCTGTTCGTCAAAGAGCAGTAACAGCACTTCCAAACCTCATACGCAATCTCCGCAACGAACAACCTCTCAAGCTCAACAAACCTTCTCCACATAACAATCATCCCAATTCCTTGCCCTCTCTCCGTCGCGCTTTCTCTTTATACGATCAGATCAATCTCATTGACAATGTCCCCGAAGACCAACTCCGTTTTCAAGGGTACCTACTCTCTTCCTTTCATTCCACATAATAATCATTTCTATTTTTCTTTCCATTTTGCAAAATGGGTTGTTTCAAAGTTTTGATTTTTAGTTAGTTTTTATATGGTGTTCAAGGAAAAGACTTTAATGTAAAATGGGTCATTTTTATTTTTAAAAAAATCTGATTTTTTTTTTTTTTAGCTAAGATCATTATATCACAGCCAATAATTGTATTGTTGAAGGGACTTAACATGATTGTTTCGATATGGGGTCAAGGAAGAGAGGTGAATGTGAAATGAGTTGATTTTTTTATTTAATGTAATGGGAATAATCTTTGCTAAGATCATTGTTTTATCGGCAATAGTTGTTGCTGGGATTTAATGGTACTGATTTCAATGATATTGTAGGTTTAAAGATACTGGATTTACTGTAAATGGAGTTGAATATGAAGGAAGTTTGCTTTGTGTTGGAAATTTGATCATGTCTTGGAAACCAAACAAGTTTTCAGAGATCACTGCTGATAGGTTTGTTTCTACAGTCTATGTGCTTGCTTTTCTCTTGCAATTCCTTTTACCTTATAGAGTATATTTGTAAAACCAATTGTTTTCTTTAATGTTTGAATACTTCTGCCACTTTTAAATGGTTTTAAATTATCGTGGATAGTTCTTAATGCATTCATTATACTTCTTCATTTTGTATATCACCATTGGTTTTGAGAATGAGCAAATGGATGCTACAATAATAATCAAGCCTTTTCGCAGTAGGTGTAGTTAGCTAAATGAATTAGCATCATCATTAGCTGGAATCAAATATCTTCTAGATCTGGTTTACAATTTGTATCGATTAACAAAATTGTTGGAACGAGCTATTATTATCAAAAGGAAAATGCTAACAAGTGCCGCTAAGAAGTTTAAAGTGGAAATTTTATCTTGGGATTTGTGTAATCAACACATTGTAACATCAAAAAGAAAATTTTTCTACATGAAAGTTATCAATTGTTTCCATTTTTTACTCCTTAACTAGTGCCCTTAGGGCACAAGGGCACTTGTTAGCAAGACCCTTATCAAAATGATTTGAATTGTTTTCAAAACCCAAAGTGGTATAAAATGAGTATTAAAGAATACCCTTTGAATAGAGATTTTCGTATTATCTTATTACTTTACTCTTCCATAAAGTTTTGTAATGTGTTGGGTCCAAAATAGACAGTTTACCTCTTAATCTCTCTTAATGGTATGGCCTATAATTTTCTTAAGAGTTTGTTTGGGAGGGGATTTTGGAAGGTTTTAGAGGGGAGGGTTTTGGAGGGCAGTCTATACTTTAATAGACATATATATTTGAGATTTTAATAAAATTAAAAAATACCATGATATTTTAATATGATCATACAACGATTCAATCACACTTCATCCTTTTTTAGAAACATTTTATAGTTTGCTTAATTTAGAAAAGAAAAACAAGCCCTCCCGTCTGAAACCCCCCTTCCATTAGTCTTCCTCACCTCTAACTATTGGACTACCCTCAATTTGGTATACTCCTCTTACCACCAGTACTTCTAAAGGTACTTTTCATACATGTCCAAATAACATAAGACAAGATTCTACTATCTTCTCTACCGTGAGGCTATCCAATTTCCCGTCTAATGATTGCATTCCAAATCCAAATCCTATTTTTTTGTGTAATCACTCATCCATGGTAAATATTTCACTGTATGATAATTACGAAACAGACAAAGAAACAACAAGAATTGAATGTGTCATTGGAATCTAGTTGAACTAGTTCCGTATCTGCTTGTGTTATTTATCTTGAATTGATATCTTATTGGTTGTCATCTTTTTCTTGTTACAGCTTGTCACTCTTTCAAATTGTCCGCCCTATTCCAGGTTGGATTTTTCAGCTTTGCTATTCTATCTTTGCCTTGACTTTCTAGTTTTCCCTTTTTTGGGGTGCAATTCTATTTTCCTTTGATTTTTCCTATTTGAATGCTCTTTGGGGCACTTGATAATGTGTTCTATAGATTAAAAGTTACTTAATATTGTTTACTTTCTCATTTGAGAAGTGGTTGATATAATGAAGACTAGTGATCCCATGTACTTGTAGTTTCTAAATTATAAGTTAGGACCCTAAAGCTGGTGAGAATCCCAATGTCACGAATATGGTTATTTGAAAATTGAAACGACTTGATTCCACTTTCCCGTGTATAATTATCTTTTCTACTGTCCTCTCTCTCTCTTGGATTACTGTCCCTTTTAGCTAGTTGTTTTGAATTAATTACAAGCCCTGCGTTATGCTCATTATGTTTCTAAATTGATACTATTACAACCTATCAAATTGATTTTGATCTATTTTAACTGAAACTGGGAAGAATTATTTGCCAGAGATTCTGATTATTGGCTGTGGAAGGAGCATTCAACATGTTGATCCTGAACTTAGACGGTTTATTCGGTCTACTGGCATGAAGTTAGAAGCTGTTGACTCGGTATATATGTTTGCTTTAATTTATGAGATCTTTGTTTTACTTCTCCTTGCATTATTTTTTTTTTTTTTTACAAATATTTTTCTTTACATTGTTGGGGCGTTATTGTTGTGTTTGATAAATTAATCTAAGTAAAACAGTACATGGTACCTCAGGACATTGGTACAGAGGGGGAATGGGAACCATTTAACCTCTTTGATATGGGACTTTAA

Protein sequence

>MS.gene45407.t1

MAVRQRAVTALPNLIRNLRNEQPLKLNKPSPHNNHPNSLPSLRRAFSLYDQINLIDNVPEDQLRFQGFKDTGFTVNGVEYEGSLLCVGNLIMSWKPNKFSEITADSLSLFQIVRPIPEILIIGCGRSIQHVDPELRRFIRSTGMKLEAVDSDIGTEGEWEPFNLFDMGL