AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45510.t1 MTR_2g097030 98.462 260 4 0 1 260 1 260 0.0 531
MS.gene45510.t1 MTR_5g079950 86.694 248 33 0 13 260 12 259 7.00e-166 459
MS.gene45510.t1 MTR_4g063975 87.597 258 31 1 3 260 2 258 5.98e-163 452
MS.gene45510.t1 MTR_7g061720 81.783 258 47 0 3 260 1 258 5.07e-160 444
MS.gene45510.t1 MTR_3g094060 67.451 255 79 2 6 258 1 253 1.27e-126 360
MS.gene45510.t1 MTR_3g094040 67.451 255 79 2 6 258 1 253 2.54e-126 359
MS.gene45510.t1 MTR_5g041700 72.926 229 60 1 31 259 22 248 4.42e-125 355
MS.gene45510.t1 MTR_4g081950 68.093 257 72 4 1 255 32 280 2.97e-123 352
MS.gene45510.t1 MTR_5g075320 67.600 250 76 3 11 258 5 251 5.78e-122 348
MS.gene45510.t1 MTR_3g466790 66.537 257 82 3 3 258 1 254 1.46e-119 342
MS.gene45510.t1 MTR_3g466760 66.535 254 79 2 5 258 13 260 1.62e-119 342
MS.gene45510.t1 MTR_3g435430 71.111 225 63 1 34 258 25 247 6.98e-119 340
MS.gene45510.t1 MTR_7g011060 63.563 247 80 2 12 258 4 240 5.44e-112 322
MS.gene45510.t1 MTR_1g085460 66.079 227 73 3 33 256 29 254 2.02e-107 311
MS.gene45510.t1 MTR_7g111010 59.761 251 95 4 6 253 1 248 7.24e-107 310
MS.gene45510.t1 MTR_1g026020 58.984 256 99 3 3 256 1 252 8.73e-107 310
MS.gene45510.t1 MTR_7g110990 63.755 229 79 3 28 253 6 233 3.92e-105 305
MS.gene45510.t1 MTR_4g124340 59.031 227 90 2 32 257 59 283 7.91e-102 298
MS.gene45510.t1 MTR_6g012520 61.265 253 87 3 6 258 1 242 2.70e-99 290
MS.gene45510.t1 MTR_7g013150 55.556 252 105 2 5 256 6 250 3.44e-97 285
MS.gene45510.t1 MTR_8g464350 54.065 246 111 1 8 253 5 248 4.84e-96 282
MS.gene45510.t1 MTR_7g013140 53.725 255 110 2 1 255 1 247 4.54e-95 280
MS.gene45510.t1 MTR_8g058990 57.658 222 92 1 34 255 30 249 1.10e-93 276
MS.gene45510.t1 MTR_7g013120 56.696 224 94 2 34 256 29 250 3.32e-93 275
MS.gene45510.t1 MTR_5g011210 50.000 254 125 2 4 256 7 259 6.01e-92 272
MS.gene45510.t1 MTR_4g102450 51.383 253 120 3 9 259 11 262 6.14e-92 272
MS.gene45510.t1 MTR_5g076950 55.111 225 100 1 34 258 41 264 4.52e-88 262
MS.gene45510.t1 MTR_0040s0140 46.825 252 131 1 7 258 8 256 1.43e-86 258
MS.gene45510.t1 MTR_2g090255 49.565 230 116 0 29 258 23 252 1.58e-84 253
MS.gene45510.t1 MTR_3g064510 53.617 235 100 5 33 259 52 285 2.82e-81 246
MS.gene45510.t1 MTR_0008s0120 60.909 110 43 0 146 255 86 195 1.45e-41 141
MS.gene45510.t1 MTR_0008s0120 52.941 85 37 1 6 90 7 88 6.15e-22 90.5
MS.gene45510.t1 MTR_6g012500 42.286 175 85 3 100 258 106 280 3.27e-37 132
MS.gene45510.t1 MTR_2g090270 28.030 264 163 10 5 256 7 255 1.31e-23 96.7
MS.gene45510.t1 MTR_0122s0020 30.638 235 137 11 34 256 41 261 6.74e-21 89.4
MS.gene45510.t1 MTR_2g090265 27.863 262 160 11 10 256 6 253 1.39e-20 88.2
MS.gene45510.t1 MTR_4g028640 29.661 236 131 11 34 253 42 258 2.11e-19 85.1
MS.gene45510.t1 MTR_0118s0070 29.870 231 132 12 39 253 53 269 3.93e-17 79.3
MS.gene45510.t1 MTR_1g085365 57.143 56 24 0 203 258 4 59 8.92e-14 64.7
MS.gene45510.t1 MTR_0122s0020 32.022 178 96 10 34 200 41 204 8.32e-13 65.9
MS.gene45510.t1 MTR_4g075790 26.667 225 130 9 45 253 32 237 2.88e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45510.t1 AT2G39700 83.137 255 42 1 7 260 3 257 2.74e-163 452
MS.gene45510.t1 AT2G28950 85.156 256 38 0 5 260 2 257 2.54e-159 442
MS.gene45510.t1 AT3G55500 76.923 260 60 0 1 260 1 260 2.03e-155 433
MS.gene45510.t1 AT2G37640 78.486 251 54 0 10 260 12 262 2.86e-151 422
MS.gene45510.t1 AT5G02260 75.194 258 64 0 3 260 1 258 4.48e-149 417
MS.gene45510.t1 AT2G37640 80.952 210 40 0 51 260 28 237 2.59e-130 369
MS.gene45510.t1 AT1G69530 67.729 251 78 2 9 259 3 250 1.89e-122 349
MS.gene45510.t1 AT1G69530 67.729 251 78 2 9 259 3 250 1.89e-122 349
MS.gene45510.t1 AT1G69530 67.331 251 79 2 9 259 3 250 4.35e-121 347
MS.gene45510.t1 AT5G56320 64.981 257 82 4 4 260 5 253 2.94e-120 343
MS.gene45510.t1 AT5G56320 64.981 257 82 4 4 260 5 253 2.94e-120 343
MS.gene45510.t1 AT5G56320 64.981 257 82 4 4 260 5 253 1.54e-119 343
MS.gene45510.t1 AT2G03090 70.996 231 64 2 29 259 26 253 1.97e-119 342
MS.gene45510.t1 AT5G05290 63.780 254 84 3 6 258 9 255 1.46e-118 339
MS.gene45510.t1 AT2G40610 69.565 230 67 2 30 258 26 253 1.16e-115 332
MS.gene45510.t1 AT1G26770 69.796 245 71 2 16 259 17 259 2.26e-114 329
MS.gene45510.t1 AT1G26770 66.148 257 79 2 3 259 1 249 2.30e-114 328
MS.gene45510.t1 AT3G29030 66.372 226 67 2 34 259 38 254 3.42e-107 310
MS.gene45510.t1 AT4G01630 62.097 248 85 5 9 253 8 249 5.59e-107 310
MS.gene45510.t1 AT1G69530 61.355 251 64 3 9 259 3 220 3.48e-106 306
MS.gene45510.t1 AT1G69530 60.956 251 65 3 9 259 3 220 5.27e-105 305
MS.gene45510.t1 AT1G20190 63.927 219 76 2 38 254 30 247 3.18e-99 290
MS.gene45510.t1 AT5G39290 50.542 277 110 4 3 256 4 276 1.29e-95 282
MS.gene45510.t1 AT5G39270 50.542 277 110 4 3 256 4 276 2.06e-95 281
MS.gene45510.t1 AT1G62980 52.941 255 117 3 3 256 1 253 2.43e-92 273
MS.gene45510.t1 AT5G39300 51.136 264 112 5 6 256 14 273 1.28e-90 269
MS.gene45510.t1 AT5G39280 56.250 224 94 2 33 256 53 272 1.78e-90 269
MS.gene45510.t1 AT1G12560 54.008 237 105 4 25 259 28 262 9.73e-89 264
MS.gene45510.t1 AT3G03220 53.744 227 104 1 34 260 40 265 6.21e-87 259
MS.gene45510.t1 AT5G39310 55.357 224 95 3 34 256 90 309 3.28e-85 257
MS.gene45510.t1 AT4G38210 45.968 248 132 1 14 259 8 255 1.34e-79 241
MS.gene45510.t1 AT1G20190 60.106 188 72 2 69 254 2 188 2.30e-78 235
MS.gene45510.t1 AT3G15370 47.638 254 117 7 7 256 6 247 2.22e-75 229
MS.gene45510.t1 AT5G39260 52.000 225 98 3 33 256 44 259 7.85e-75 229
MS.gene45510.t1 AT3G15370 42.756 283 116 8 8 256 7 277 1.05e-68 214
MS.gene45510.t1 AT4G28250 30.085 236 138 10 34 256 36 257 1.38e-22 94.0
MS.gene45510.t1 AT2G20750 29.958 237 140 10 34 256 40 264 1.29e-21 91.3
MS.gene45510.t1 AT1G65680 30.213 235 135 11 34 253 47 267 2.43e-20 87.8
MS.gene45510.t1 AT4G28250 27.660 235 139 9 34 256 36 251 7.10e-19 83.6
MS.gene45510.t1 AT2G20750 30.857 175 99 7 34 197 40 203 1.05e-14 71.6
MS.gene45510.t1 AT4G28250 31.073 177 93 8 34 200 36 193 1.43e-13 68.2
MS.gene45510.t1 AT3G60570 23.723 274 180 8 1 260 1 259 4.06e-13 67.8
MS.gene45510.t1 AT3G45970 25.352 213 137 9 52 253 14 215 4.66e-13 67.4
MS.gene45510.t1 AT4G28250 31.034 174 91 8 34 197 36 190 5.50e-13 66.6
MS.gene45510.t1 AT4G17030 25.100 251 165 9 13 253 6 243 3.37e-12 65.1

Find 75 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCGTCGCACTTCCACTTCT+TGG 0.241176 2.1:+6656760 MS.gene45510:CDS
GGAACATTGCTCCACATAAT+TGG 0.246045 2.1:+6656781 MS.gene45510:CDS
GCTCCACATAATTGGCAATT+TGG 0.259736 2.1:+6656789 MS.gene45510:CDS
TCACTAGGTTGAGCAAAATT+AGG 0.282502 2.1:-6655737 None:intergenic
TTGGCAATCAAATTCAGTTT+TGG 0.302765 2.1:+6656701 MS.gene45510:CDS
GTTAGTAGCTGTGATGAAAA+TGG 0.313522 2.1:-6655705 None:intergenic
AGAAATGGGTATGGGGAGTA+TGG 0.315839 2.1:+6655245 None:intergenic
GACAAGCAGTGGTGTCATTC+TGG 0.336967 2.1:+6655674 MS.gene45510:CDS
TATGTTAAGGGCACTAAAAC+AGG 0.337612 2.1:+6656645 MS.gene45510:CDS
GGATGCCAATGAGCAGAAAC+TGG 0.338905 2.1:+6656670 MS.gene45510:CDS
TTAGGAGGAGCATGTGGATA+TGG 0.344997 2.1:+6655545 MS.gene45510:intron
GTCCTAATCAGCAACGTTGC+AGG 0.348958 2.1:+6656600 MS.gene45510:CDS
GTAGGAAGCGTGGTGGGATT+AGG 0.372081 2.1:+6656544 MS.gene45510:CDS
CACCTGCAACGTTGCTGATT+AGG 0.375478 2.1:-6656602 None:intergenic
GCTTTGTCCTTCAGAGTTAC+CGG 0.383935 2.1:+6656732 MS.gene45510:CDS
CAATTTGGTCAAACTTTCAC+TGG 0.389947 2.1:+6656804 MS.gene45510:CDS
ATCAGCAACGTTGCAGGTGC+AGG 0.391465 2.1:+6656606 MS.gene45510:CDS
GGGATTAGGTTCACAATAAA+CGG 0.397891 2.1:+6656558 MS.gene45510:CDS
AAAGGCGACAGGGACGATTC+CGG 0.402838 2.1:-6655840 None:intergenic
TACGGAGGTTCCGATGCTTC+CGG 0.415576 2.1:+6655372 MS.gene45510:CDS
TATAGTGAGGACCTATGTTA+AGG 0.434796 2.1:+6656632 MS.gene45510:CDS
AACTTGTATAGTCAAGGTTA+TGG 0.443205 2.1:+6655569 MS.gene45510:CDS
TCGTCCCTGTCGCCTTTCGC+CGG 0.466817 2.1:+6655846 MS.gene45510:CDS
TGACCAAATTGCCAATTATG+TGG 0.467767 2.1:-6656792 None:intergenic
ACAAACCGGCGAAAGGCGAC+AGG 0.470017 2.1:-6655851 None:intergenic
TCCGATGCTTCCGGCACCAT+GGG 0.492789 2.1:+6655381 MS.gene45510:CDS
ATCCCACCACGCTTCCTACA+TGG 0.515202 2.1:-6656540 None:intergenic
ATAGTGAGGACCTATGTTAA+GGG 0.521329 2.1:+6656633 MS.gene45510:CDS
GCACCACCATTGTAAACACC+TGG 0.523553 2.1:-6655324 None:intergenic
ACCCATGGTGCCGGAAGCAT+CGG 0.533485 2.1:-6655382 None:intergenic
TGGAGCAATGTTCCAAGAAG+TGG 0.536985 2.1:-6656772 None:intergenic
GATGCCAATGAGCAGAAACT+GGG 0.559055 2.1:+6656671 MS.gene45510:CDS
TCAGCAACGTTGCAGGTGCA+GGG 0.562393 2.1:+6656607 MS.gene45510:CDS
TTCCGATGCTTCCGGCACCA+TGG 0.566242 2.1:+6655380 MS.gene45510:CDS
TTCAACAATGGACTAAGTTG+TGG 0.574416 2.1:+6655623 MS.gene45510:CDS
GTAGGGTACAAACCGGCGAA+AGG 0.576269 2.1:-6655858 None:intergenic
ATGGTAAATGCTAGAATCCC+AGG 0.576542 2.1:+6655306 MS.gene45510:CDS
GGAAGTGCGACGGTCACTAC+CGG 0.579926 2.1:-6656751 None:intergenic
CACCAACCACCATTGTCACT+AGG 0.581152 2.1:-6655752 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 2.1:+6655563 MS.gene45510:CDS
GTCACTACCGGTAACTCTGA+AGG 0.588519 2.1:-6656739 None:intergenic
ATCCCAGGTGTTTACAATGG+TGG 0.596482 2.1:+6655321 MS.gene45510:CDS
GTAGCTGTGATGAAAATGGA+AGG 0.600957 2.1:-6655701 None:intergenic
ACTAGACGTACCCATGGTGC+CGG 0.607745 2.1:-6655391 None:intergenic
TTTGCTCAACCTAGTGACAA+TGG 0.609073 2.1:+6655743 MS.gene45510:CDS
GCAAGATCAAAGTGAGGACG+AGG 0.609633 2.1:-6655782 None:intergenic
TCCAAGAAGTGGAAGTGCGA+CGG 0.611335 2.1:-6656761 None:intergenic
TATGTCACTAACAATGTGGA+TGG 0.613645 2.1:+6655287 MS.gene45510:CDS
AACCTAGTGACAATGGTGGT+TGG 0.618881 2.1:+6655750 MS.gene45510:CDS
CAGCAACGTTGCAGGTGCAG+GGG 0.618959 2.1:+6656608 MS.gene45510:CDS
GATTATGCAGGGTGCCATGT+AGG 0.619428 2.1:+6656526 MS.gene45510:intron
TGCCATGTAGGAAGCGTGGT+GGG 0.620597 2.1:+6656538 MS.gene45510:CDS
TTAGGACTAAGTTAAAGTAA+CGG 0.623009 2.1:-6656584 None:intergenic
GTGTGTTTAGGAGGAGCATG+TGG 0.626776 2.1:+6655539 MS.gene45510:intron
AGATCAAAGTGAGGACGAGG+AGG 0.633474 2.1:-6655779 None:intergenic
CTAGGTTGAGCAAAATTAGG+AGG 0.633552 2.1:-6655734 None:intergenic
CAAACCGGCGAAAGGCGACA+GGG 0.633653 2.1:-6655850 None:intergenic
TAGCTGTGATGAAAATGGAA+GGG 0.639778 2.1:-6655700 None:intergenic
AAAATTGCTGAATATCGCGC+CGG 0.644009 2.1:+6655821 MS.gene45510:CDS
CACCACCATTGTAAACACCT+GGG 0.648144 2.1:-6655323 None:intergenic
GTGTTTACAATGGTGGTGCA+TGG 0.652108 2.1:+6655328 MS.gene45510:CDS
AGCACAGCACTATTCAACAA+TGG 0.654867 2.1:+6655611 MS.gene45510:CDS
GTGCCATGTAGGAAGCGTGG+TGG 0.655283 2.1:+6656537 MS.gene45510:CDS
AGAATCCCAGGTGTTTACAA+TGG 0.660050 2.1:+6655318 MS.gene45510:CDS
ATGTTAAGGGCACTAAAACA+GGG 0.661896 2.1:+6656646 MS.gene45510:CDS
TTATTATGTCACTAACAATG+TGG 0.670910 2.1:+6655283 MS.gene45510:CDS
CAGGTGCAGGGGATATAGTG+AGG 0.673660 2.1:+6656619 MS.gene45510:CDS
ATGCCAATGAGCAGAAACTG+GGG 0.677827 2.1:+6656672 MS.gene45510:CDS
GATCAAAGTGAGGACGAGGA+GGG 0.681799 2.1:-6655778 None:intergenic
AGGGTGCCATGTAGGAAGCG+TGG 0.699181 2.1:+6656534 MS.gene45510:intron
TGCCAATGAGCAGAAACTGG+GGG 0.704067 2.1:+6656673 MS.gene45510:CDS
GGCATGGCAAGATCAAAGTG+AGG 0.710022 2.1:-6655788 None:intergenic
GCTCAACCTAGTGACAATGG+TGG 0.714318 2.1:+6655746 MS.gene45510:CDS
AGTGTGCAAATGACAAGCAG+TGG 0.728732 2.1:+6655663 MS.gene45510:CDS
TTAAGGGCACTAAAACAGGG+TGG 0.761599 2.1:+6656649 MS.gene45510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAAAATAGTTTATGA+AGG + chr2.1:6656297-6656316 MS.gene45510:intron 15.0%
!!! AATAAGAAGTATATAGATAA+TGG + chr2.1:6656075-6656094 MS.gene45510:intron 15.0%
!!! ATAAGAAGTATATAGATAAT+GGG + chr2.1:6656076-6656095 MS.gene45510:intron 15.0%
!!! ATATATAAGCACTTTTATTA+GGG - chr2.1:6656183-6656202 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG - chr2.1:6656184-6656203 None:intergenic 15.0%
!! ATTAGTTATTTATTCCAACA+TGG - chr2.1:6656119-6656138 None:intergenic 20.0%
!! TAAATGACTTGAATGTTAAA+TGG + chr2.1:6656009-6656028 MS.gene45510:intron 20.0%
!!! TCAATTTTAATAGAGCAAAT+AGG - chr2.1:6655891-6655910 None:intergenic 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG + chr2.1:6655894-6655913 MS.gene45510:intron 20.0%
! GAAAACATCTTATGACTTAT+AGG - chr2.1:6656248-6656267 None:intergenic 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG - chr2.1:6656587-6656606 None:intergenic 25.0%
! TTATTATGTCACTAACAATG+TGG + chr2.1:6655283-6655302 MS.gene45510:CDS 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG - chr2.1:6656427-6656446 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+TGG - chr2.1:6656397-6656416 None:intergenic 25.0%
!! TTTGTTATGTTGATTATGCA+GGG + chr2.1:6656515-6656534 MS.gene45510:intron 25.0%
!!! ATTTTTGTTTGGAAGTGTAT+AGG - chr2.1:6656386-6656405 None:intergenic 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG + chr2.1:6656088-6656107 MS.gene45510:intron 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG - chr2.1:6656276-6656295 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG + chr2.1:6656514-6656533 MS.gene45510:intron 25.0%
AAACAAACACTTGATGTCAT+CGG - chr2.1:6655928-6655947 None:intergenic 30.0%
AACTTGTATAGTCAAGGTTA+TGG + chr2.1:6655569-6655588 MS.gene45510:CDS 30.0%
AGCAAATAGGCAAAAATGTA+GGG - chr2.1:6655878-6655897 None:intergenic 30.0%
ATAAATTGGTAAGACCATGT+TGG + chr2.1:6656102-6656121 MS.gene45510:intron 30.0%
TATGGAAACTTGTATAGTCA+AGG + chr2.1:6655563-6655582 MS.gene45510:CDS 30.0%
TGTGATAGATCTCAATGATA+AGG + chr2.1:6656036-6656055 MS.gene45510:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG + chr2.1:6656701-6656720 MS.gene45510:CDS 30.0%
!! AATTTTAAGGAACATAGGCA+TGG - chr2.1:6655807-6655826 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG + chr2.1:6655935-6655954 MS.gene45510:intron 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG + chr2.1:6656705-6656724 MS.gene45510:CDS 30.0%
!! TCAGCAATTTTAAGGAACAT+AGG - chr2.1:6655812-6655831 None:intergenic 30.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG + chr2.1:6655527-6655546 MS.gene45510:intron 30.0%
ATAGTGAGGACCTATGTTAA+GGG + chr2.1:6656633-6656652 MS.gene45510:CDS 35.0%
ATCCAAACATGCCTTAGATA+AGG + chr2.1:6656413-6656432 MS.gene45510:intron 35.0%
CAAAAATGTAGGGTACAAAC+CGG - chr2.1:6655868-6655887 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG + chr2.1:6656804-6656823 MS.gene45510:CDS 35.0%
GAGCAAATAGGCAAAAATGT+AGG - chr2.1:6655879-6655898 None:intergenic 35.0%
GGGATTAGGTTCACAATAAA+CGG + chr2.1:6656558-6656577 MS.gene45510:CDS 35.0%
GTTAGTAGCTGTGATGAAAA+TGG - chr2.1:6655708-6655727 None:intergenic 35.0%
TAGCTGTGATGAAAATGGAA+GGG - chr2.1:6655703-6655722 None:intergenic 35.0%
TATAGTGAGGACCTATGTTA+AGG + chr2.1:6656632-6656651 MS.gene45510:CDS 35.0%
TATGTCACTAACAATGTGGA+TGG + chr2.1:6655287-6655306 MS.gene45510:CDS 35.0%
TCCTCCTAAACACACAAAAA+AGG - chr2.1:6655534-6655553 None:intergenic 35.0%
TGACCAAATTGCCAATTATG+TGG - chr2.1:6656795-6656814 None:intergenic 35.0%
! CGCGATATTCAGCAATTTTA+AGG - chr2.1:6655820-6655839 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG - chr2.1:6655740-6655759 None:intergenic 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG + chr2.1:6656646-6656665 MS.gene45510:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG + chr2.1:6656704-6656723 MS.gene45510:CDS 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG + chr2.1:6656645-6656664 MS.gene45510:CDS 35.0%
!! TTCAACAATGGACTAAGTTG+TGG + chr2.1:6655623-6655642 MS.gene45510:CDS 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG - chr2.1:6656646-6656665 None:intergenic 35.0%
AAAATTGCTGAATATCGCGC+CGG + chr2.1:6655821-6655840 MS.gene45510:CDS 40.0%
AGAATCCCAGGTGTTTACAA+TGG + chr2.1:6655318-6655337 MS.gene45510:CDS 40.0%
AGCACAGCACTATTCAACAA+TGG + chr2.1:6655611-6655630 MS.gene45510:CDS 40.0%
ATGGTAAATGCTAGAATCCC+AGG + chr2.1:6655306-6655325 MS.gene45510:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG + chr2.1:6656789-6656808 MS.gene45510:CDS 40.0%
GGAACATTGCTCCACATAAT+TGG + chr2.1:6656781-6656800 MS.gene45510:CDS 40.0%
GTAGCTGTGATGAAAATGGA+AGG - chr2.1:6655704-6655723 None:intergenic 40.0%
TTTAGTACTAGACGTACCCA+TGG - chr2.1:6655400-6655419 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG + chr2.1:6655743-6655762 MS.gene45510:CDS 40.0%
! AGCCTTATCTAAGGCATGTT+TGG - chr2.1:6656418-6656437 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG - chr2.1:6655737-6655756 None:intergenic 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG + chr2.1:6655354-6655373 MS.gene45510:CDS 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG + chr2.1:6655530-6655549 MS.gene45510:intron 40.0%
AACCTAGTGACAATGGTGGT+TGG + chr2.1:6655750-6655769 MS.gene45510:CDS 45.0%
AGTGTGCAAATGACAAGCAG+TGG + chr2.1:6655663-6655682 MS.gene45510:CDS 45.0%
ATCCCAGGTGTTTACAATGG+TGG + chr2.1:6655321-6655340 MS.gene45510:CDS 45.0%
ATCGGAACCTCCGTAAAAAG+TGG - chr2.1:6655367-6655386 None:intergenic 45.0%
ATGCCAATGAGCAGAAACTG+GGG + chr2.1:6656672-6656691 MS.gene45510:CDS 45.0%
CACCACCATTGTAAACACCT+GGG - chr2.1:6655326-6655345 None:intergenic 45.0%
GATGCCAATGAGCAGAAACT+GGG + chr2.1:6656671-6656690 MS.gene45510:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG + chr2.1:6656732-6656751 MS.gene45510:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG - chr2.1:6656775-6656794 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG + chr2.1:6655328-6655347 MS.gene45510:CDS 45.0%
! TTAGGAGGAGCATGTGGATA+TGG + chr2.1:6655545-6655564 MS.gene45510:intron 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG + chr2.1:6656649-6656668 MS.gene45510:CDS 45.0%
AGATCAAAGTGAGGACGAGG+AGG - chr2.1:6655782-6655801 None:intergenic 50.0%
CACCAACCACCATTGTCACT+AGG - chr2.1:6655755-6655774 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG - chr2.1:6655781-6655800 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG - chr2.1:6655785-6655804 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG - chr2.1:6655327-6655346 None:intergenic 50.0%
GCAGAAACTGGGGGCAAAAT+TGG + chr2.1:6656682-6656701 MS.gene45510:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG + chr2.1:6655746-6655765 MS.gene45510:CDS 50.0%
GGATGCCAATGAGCAGAAAC+TGG + chr2.1:6656670-6656689 MS.gene45510:CDS 50.0%
GGCATGGCAAGATCAAAGTG+AGG - chr2.1:6655791-6655810 None:intergenic 50.0%
GTCACTACCGGTAACTCTGA+AGG - chr2.1:6656742-6656761 None:intergenic 50.0%
GTCCTAATCAGCAACGTTGC+AGG + chr2.1:6656600-6656619 MS.gene45510:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG + chr2.1:6656673-6656692 MS.gene45510:CDS 50.0%
! CACCTGCAACGTTGCTGATT+AGG - chr2.1:6656605-6656624 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG + chr2.1:6656526-6656545 MS.gene45510:intron 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG + chr2.1:6655539-6655558 MS.gene45510:intron 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG - chr2.1:6656764-6656783 None:intergenic 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG + chr2.1:6655674-6655693 MS.gene45510:CDS 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG + chr2.1:6655357-6655376 MS.gene45510:CDS 50.0%
AAAGGCGACAGGGACGATTC+CGG - chr2.1:6655843-6655862 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG + chr2.1:6656760-6656779 MS.gene45510:CDS 55.0%
ACTAGACGTACCCATGGTGC+CGG - chr2.1:6655394-6655413 None:intergenic 55.0%
ATCAGCAACGTTGCAGGTGC+AGG + chr2.1:6656606-6656625 MS.gene45510:CDS 55.0%
ATCCCACCACGCTTCCTACA+TGG - chr2.1:6656543-6656562 None:intergenic 55.0%
CAGGTGCAGGGGATATAGTG+AGG + chr2.1:6656619-6656638 MS.gene45510:CDS 55.0%
GTAGGGTACAAACCGGCGAA+AGG - chr2.1:6655861-6655880 None:intergenic 55.0%
TACGGAGGTTCCGATGCTTC+CGG + chr2.1:6655372-6655391 MS.gene45510:CDS 55.0%
TCAGCAACGTTGCAGGTGCA+GGG + chr2.1:6656607-6656626 MS.gene45510:CDS 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG - chr2.1:6656678-6656697 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG + chr2.1:6656544-6656563 MS.gene45510:CDS 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG + chr2.1:6656538-6656557 MS.gene45510:CDS 55.0%
ACAAACCGGCGAAAGGCGAC+AGG - chr2.1:6655854-6655873 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG - chr2.1:6655853-6655872 None:intergenic 60.0%
CAGCAACGTTGCAGGTGCAG+GGG + chr2.1:6656608-6656627 MS.gene45510:CDS 60.0%
TCCGATGCTTCCGGCACCAT+GGG + chr2.1:6655381-6655400 MS.gene45510:CDS 60.0%
TTCCGATGCTTCCGGCACCA+TGG + chr2.1:6655380-6655399 MS.gene45510:CDS 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG - chr2.1:6655385-6655404 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG + chr2.1:6656534-6656553 MS.gene45510:intron 60.0%
! GGAAGTGCGACGGTCACTAC+CGG - chr2.1:6656754-6656773 None:intergenic 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG + chr2.1:6656537-6656556 MS.gene45510:CDS 60.0%
TCGTCCCTGTCGCCTTTCGC+CGG + chr2.1:6655846-6655865 MS.gene45510:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6655249 6656845 6655249 ID=MS.gene45510
chr2.1 mRNA 6655249 6656845 6655249 ID=MS.gene45510.t1;Parent=MS.gene45510
chr2.1 exon 6655249 6655402 6655249 ID=MS.gene45510.t1.exon1;Parent=MS.gene45510.t1
chr2.1 CDS 6655249 6655402 6655249 ID=cds.MS.gene45510.t1;Parent=MS.gene45510.t1
chr2.1 exon 6655549 6655867 6655549 ID=MS.gene45510.t1.exon2;Parent=MS.gene45510.t1
chr2.1 CDS 6655549 6655867 6655549 ID=cds.MS.gene45510.t1;Parent=MS.gene45510.t1
chr2.1 exon 6656536 6656845 6656536 ID=MS.gene45510.t1.exon3;Parent=MS.gene45510.t1
chr2.1 CDS 6656536 6656845 6656536 ID=cds.MS.gene45510.t1;Parent=MS.gene45510.t1
Gene Sequence

>MS.gene45510

ATGGGTATGGGGAGTATGGTTTACATTGTGACTCTTATTATGTCACTAACAATGTGGATGGTAAATGCTAGAATCCCAGGTGTTTACAATGGTGGTGCATGGCAAACAGCTCATGCCACTTTTTACGGAGGTTCCGATGCTTCCGGCACCATGGGTACGTCTAGTACTAAAATAAATAACGTTATAACACATTAATATAACATGCTTTTGTTATTAGATTCAGTTTTTGTCGCTTTGATTCGTAAATATAAAAAAAAAAATGAACGATGTTGTGACTGTTTGCCTTTTTTGTGTGTTTAGGAGGAGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGAGTTAACACAGCAGCATTAAGCACAGCACTATTCAACAATGGACTAAGTTGTGGTTCTTGTTTTGAATTGAAGTGTGCAAATGACAAGCAGTGGTGTCATTCTGGTAGCCCTTCCATTTTCATCACAGCTACTAACTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGTCCTCACTTTGATCTTGCCATGCCTATGTTCCTTAAAATTGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTTTCGCCGGTTTGTACCCTACATTTTTGCCTATTTGCTCTATTAAAATTGATTTTGGCATAATAACCGATGACATCAAGTGTTTGTTTGATTTTGTGGTGATAAAAGAATGATTTTGAATGAATTAATTTTATAGAACTTATTTTAGCTTAAATGACTTGAATGTTAAATGGTTTTTGTGATAGATCTCAATGATAAGGAAAAAAAAAAAAGTAGAATAAGAAGTATATAGATAATGGGAGAATAAATTGGTAAGACCATGTTGGAATAAATAACTAATTTGCAGCTTCACATTTATCATCATAAGTGCTTATACATAAACCCTAATAAAAGTGCTTATATATAATCTATTTTTATAATAAGTGAGAATTAAGTTAAGCTATTTTCCTATAAGTCATAAGATGTTTTCATCAACCACTTCAAAGAAGTTAAGAAAATAAACTTAAAATAGTTTATGAAGGATGTCATAAGCTTTTGTAAATAAATAAATAAATACAATGTCATAACTTATTTGCATAAGTTCTCCTATACACTTCCAAACAAAAATTATGTCAATCCAAACATGCCTTAGATAAGGCTTATTTACTTAGCTAAAGAACACTAGTATAACTAATTCATTTTTATCTCTAGTTTATATCTATTTGTATTTTATTAATTTTGTTATGTTGATTATGCAGGGTGCCATGTAGGAAGCGTGGTGGGATTAGGTTCACAATAAACGGATTCCGTTACTTTAACTTAGTCCTAATCAGCAACGTTGCAGGTGCAGGGGATATAGTGAGGACCTATGTTAAGGGCACTAAAACAGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCAGTTTTGGTGGGTCAAGCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCTCCACATAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTCGTGTTTGA
Protein sequence

>MS.gene45510.t1

MGMGSMVYIVTLIMSLTMWMVNARIPGVYNGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTKTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNIAPHNWQFGQTFTGKNFRV