AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62821

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62821.t1 MTR_4g102450 94.697 264 12 1 1 264 1 262 0.0 515
MS.gene62821.t1 MTR_5g011210 78.740 254 54 0 11 264 10 263 1.07e-154 431
MS.gene62821.t1 MTR_5g079950 53.333 255 116 3 11 264 6 258 7.58e-95 280
MS.gene62821.t1 MTR_2g097030 50.195 257 125 3 9 264 5 259 2.88e-92 273
MS.gene62821.t1 MTR_7g061720 51.172 256 121 4 11 264 4 257 2.90e-89 265
MS.gene62821.t1 MTR_4g063975 50.189 265 123 5 1 264 1 257 7.48e-87 259
MS.gene62821.t1 MTR_7g111010 50.391 256 119 4 11 263 4 254 8.33e-86 256
MS.gene62821.t1 MTR_1g085460 53.219 233 105 3 34 263 26 257 1.18e-85 256
MS.gene62821.t1 MTR_5g041700 51.600 250 110 5 11 258 3 243 4.46e-85 254
MS.gene62821.t1 MTR_7g110990 55.022 229 99 3 38 263 12 239 1.33e-84 253
MS.gene62821.t1 MTR_3g094040 50.198 253 118 5 9 258 2 249 4.86e-84 252
MS.gene62821.t1 MTR_4g081950 55.605 223 93 4 38 258 61 279 5.19e-84 253
MS.gene62821.t1 MTR_3g094060 50.988 253 111 5 9 258 7 249 7.12e-84 251
MS.gene62821.t1 MTR_3g435430 54.709 223 95 4 38 258 25 243 7.19e-83 249
MS.gene62821.t1 MTR_7g011060 51.230 244 107 4 16 258 4 236 1.50e-81 245
MS.gene62821.t1 MTR_5g075320 53.394 221 99 3 38 257 29 246 1.07e-80 243
MS.gene62821.t1 MTR_8g058990 52.609 230 103 4 36 263 28 253 1.18e-80 243
MS.gene62821.t1 MTR_7g013140 49.606 254 118 4 11 263 7 251 8.20e-80 241
MS.gene62821.t1 MTR_8g464350 47.490 259 125 5 7 263 5 254 1.12e-79 241
MS.gene62821.t1 MTR_1g026020 50.215 233 113 2 33 263 24 255 1.31e-79 241
MS.gene62821.t1 MTR_3g466760 47.104 259 133 3 1 258 1 256 2.51e-79 240
MS.gene62821.t1 MTR_7g013120 49.412 255 119 5 11 263 7 253 4.58e-79 239
MS.gene62821.t1 MTR_4g124340 47.899 238 119 4 22 257 45 279 5.49e-79 240
MS.gene62821.t1 MTR_3g466790 49.600 250 120 4 9 257 5 249 3.55e-78 237
MS.gene62821.t1 MTR_7g013150 50.877 228 108 3 37 263 29 253 2.27e-76 232
MS.gene62821.t1 MTR_0040s0140 44.628 242 130 3 18 258 14 252 3.77e-69 214
MS.gene62821.t1 MTR_6g012520 50.000 250 112 4 9 258 2 238 9.05e-69 213
MS.gene62821.t1 MTR_2g090255 40.496 242 142 2 18 258 8 248 1.48e-65 205
MS.gene62821.t1 MTR_5g076950 46.188 223 119 1 36 258 39 260 1.31e-64 203
MS.gene62821.t1 MTR_3g064510 45.148 237 109 7 36 258 51 280 3.75e-60 192
MS.gene62821.t1 MTR_0008s0120 33.772 228 93 4 36 263 30 199 3.76e-32 117
MS.gene62821.t1 MTR_2g090270 30.712 267 154 10 10 263 10 258 4.04e-32 119
MS.gene62821.t1 MTR_0122s0020 31.047 277 158 11 6 264 4 265 1.73e-31 117
MS.gene62821.t1 MTR_2g090265 31.557 244 138 10 33 263 29 256 1.38e-29 112
MS.gene62821.t1 MTR_4g028640 31.183 279 156 11 4 264 5 265 8.50e-27 105
MS.gene62821.t1 MTR_6g012500 45.361 97 52 1 162 258 181 276 7.64e-22 92.4
MS.gene62821.t1 MTR_0809s0010 29.150 247 141 9 33 263 42 270 9.39e-22 91.7
MS.gene62821.t1 MTR_0118s0070 29.237 236 139 8 43 263 53 275 2.25e-21 90.9
MS.gene62821.t1 MTR_5g013440 25.292 257 170 8 16 264 10 252 5.64e-21 89.4
MS.gene62821.t1 MTR_0122s0020 30.698 215 118 9 6 203 4 204 8.88e-21 87.8
MS.gene62821.t1 MTR_4g099370 28.302 265 152 10 16 264 9 251 2.49e-19 84.7
MS.gene62821.t1 MTR_4g075790 28.194 227 132 7 51 263 34 243 3.21e-16 76.6
MS.gene62821.t1 MTR_4g098930 26.592 267 157 10 10 261 8 250 9.14e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62821.t1 AT1G12560 65.625 256 86 2 9 264 9 262 2.83e-123 352
MS.gene62821.t1 AT1G62980 64.777 247 87 0 18 264 11 257 1.25e-119 342
MS.gene62821.t1 AT3G55500 54.618 249 110 3 11 257 6 253 2.27e-94 278
MS.gene62821.t1 AT2G39700 53.226 248 113 3 11 257 5 250 5.25e-93 275
MS.gene62821.t1 AT5G02260 50.201 249 122 2 11 258 5 252 3.95e-89 265
MS.gene62821.t1 AT2G37640 52.033 246 116 2 14 258 12 256 4.61e-89 265
MS.gene62821.t1 AT2G28950 49.799 249 122 3 11 257 3 250 5.85e-88 262
MS.gene62821.t1 AT4G01630 54.701 234 92 4 38 263 28 255 1.12e-87 261
MS.gene62821.t1 AT1G69530 51.200 250 115 5 11 258 1 245 5.33e-85 254
MS.gene62821.t1 AT1G69530 51.200 250 115 5 11 258 1 245 5.33e-85 254
MS.gene62821.t1 AT1G69530 50.794 252 117 5 11 260 1 247 7.86e-85 254
MS.gene62821.t1 AT5G56320 52.016 248 111 5 12 258 7 247 1.28e-84 253
MS.gene62821.t1 AT5G56320 52.016 248 111 5 12 258 7 247 1.28e-84 253
MS.gene62821.t1 AT2G03090 55.605 223 97 2 36 258 28 248 1.30e-84 253
MS.gene62821.t1 AT5G56320 52.016 248 111 5 12 258 7 247 6.43e-84 253
MS.gene62821.t1 AT2G40610 51.037 241 113 4 19 257 11 248 8.64e-82 246
MS.gene62821.t1 AT1G20190 50.000 238 116 2 28 263 16 252 2.34e-79 240
MS.gene62821.t1 AT2G37640 54.634 205 91 2 55 258 28 231 1.29e-78 238
MS.gene62821.t1 AT5G05290 51.339 224 102 5 38 258 32 251 6.13e-78 236
MS.gene62821.t1 AT5G39300 48.413 252 117 6 19 263 31 276 3.18e-77 235
MS.gene62821.t1 AT5G39280 48.207 251 118 6 19 263 31 275 8.75e-77 234
MS.gene62821.t1 AT1G26770 49.213 254 115 5 7 258 3 244 2.12e-76 232
MS.gene62821.t1 AT1G26770 49.213 254 115 5 7 258 13 254 2.73e-76 232
MS.gene62821.t1 AT1G69530 50.000 236 108 6 11 244 1 228 4.45e-76 231
MS.gene62821.t1 AT5G39270 50.000 230 107 5 36 263 56 279 5.24e-76 232
MS.gene62821.t1 AT5G39290 50.218 229 106 5 37 263 57 279 7.28e-75 229
MS.gene62821.t1 AT1G69530 52.036 221 98 5 11 229 1 215 1.31e-74 227
MS.gene62821.t1 AT3G29030 45.703 256 121 3 12 258 3 249 1.50e-74 228
MS.gene62821.t1 AT5G39310 45.378 238 119 6 30 263 82 312 1.07e-67 212
MS.gene62821.t1 AT3G15370 44.578 249 126 6 17 260 6 247 3.05e-63 199
MS.gene62821.t1 AT3G03220 44.889 225 117 4 37 258 39 259 3.05e-63 199
MS.gene62821.t1 AT4G38210 42.060 233 130 4 35 264 25 255 5.86e-61 193
MS.gene62821.t1 AT1G20190 48.187 193 97 2 73 263 2 193 2.34e-60 189
MS.gene62821.t1 AT3G15370 39.785 279 126 7 17 260 6 277 7.76e-57 183
MS.gene62821.t1 AT5G39260 42.241 232 118 6 36 263 43 262 2.70e-54 176
MS.gene62821.t1 AT4G28250 32.246 276 155 10 4 263 1 260 1.35e-35 128
MS.gene62821.t1 AT4G28250 31.618 272 156 9 4 263 1 254 2.92e-34 124
MS.gene62821.t1 AT1G65680 32.800 250 141 8 28 263 37 273 5.52e-33 121
MS.gene62821.t1 AT2G20750 30.824 279 162 10 4 263 1 267 2.54e-32 120
MS.gene62821.t1 AT2G45110 30.576 278 159 11 1 263 1 259 1.63e-27 107
MS.gene62821.t1 AT1G65681 31.556 225 129 7 52 264 12 223 6.31e-25 99.4
MS.gene62821.t1 AT4G28250 30.000 210 120 7 4 203 1 193 3.20e-21 89.0
MS.gene62821.t1 AT4G28250 30.435 207 117 7 4 200 1 190 3.89e-21 89.0
MS.gene62821.t1 AT2G20750 30.319 188 107 7 36 211 38 213 8.52e-20 85.5
MS.gene62821.t1 AT4G17030 26.087 253 168 7 17 261 6 247 2.92e-19 84.7
MS.gene62821.t1 AT3G60570 26.217 267 166 8 10 263 9 257 4.68e-19 84.3
MS.gene62821.t1 AT3G60570 26.244 221 135 7 56 263 4 209 4.06e-14 70.1
MS.gene62821.t1 AT3G45970 25.806 217 141 6 57 263 15 221 2.18e-12 65.5

Find 79 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCAACATTGTTCAATAA+TGG 0.212841 8.1:-21218070 MS.gene62821:CDS
CCAAGCTATTATAGTTTCTT+TGG 0.229810 8.1:+21216872 None:intergenic
GTATCAATATTGTAGCTTCT+TGG 0.260714 8.1:-21218690 MS.gene62821:CDS
AGGAAATGGGTATTGGTTAT+TGG 0.261742 8.1:-21217057 MS.gene62821:CDS
CAAATATTTGCCCTCCTAAT+TGG 0.264760 8.1:-21217961 MS.gene62821:CDS
CGATTCTCTTTCCAAGGAAA+TGG 0.277433 8.1:-21217071 MS.gene62821:CDS
GGAATGTTGCTCCTTCCAAC+TGG 0.286104 8.1:-21216851 MS.gene62821:CDS
GCTCCTTCCAACTGGGCTGC+TGG 0.323833 8.1:-21216843 MS.gene62821:CDS
ATAGCAAACATGTGGGTTAA+AGG 0.332124 8.1:-21217002 MS.gene62821:CDS
GTTCAACATTGTTCAATAAT+GGG 0.335116 8.1:-21218069 MS.gene62821:CDS
AATTTGTTTCTGAATGGTTA+TGG 0.357643 8.1:-21218112 MS.gene62821:CDS
AATTACCTGCGATACATAAC+AGG 0.358374 8.1:+21217833 None:intergenic
TAATCTTGAAAGAAAGAGTT+TGG 0.362500 8.1:+21216907 None:intergenic
GCACATTTCAACCCAGTTCA+TGG 0.362883 8.1:-21218610 MS.gene62821:CDS
CTTTCCAAGGAAATGGGTAT+TGG 0.363273 8.1:-21217064 MS.gene62821:CDS
ATTTGTTTCTGAATGGTTAT+GGG 0.373242 8.1:-21218111 MS.gene62821:CDS
AAAATTGACATGTGTGGAAT+AGG 0.412567 8.1:+21216815 None:intergenic
GGATTAGCATGAGCCACAAT+TGG 0.416127 8.1:-21216965 MS.gene62821:CDS
TCGGATGCCTGAGACCAATT+AGG 0.422103 8.1:+21217947 None:intergenic
TGGTCTCAGGCATCCGATTA+CGG 0.441938 8.1:-21217941 MS.gene62821:CDS
ATAACCAATACCCATTTCCT+TGG 0.444503 8.1:+21217060 None:intergenic
GATTAGCATGAGCCACAATT+GGG 0.448115 8.1:-21216964 MS.gene62821:CDS
TGGGTTAAAGGAAGTAGAAC+AGG 0.452727 8.1:-21216990 MS.gene62821:CDS
GATTCTCTTTCCAAGGAAAT+GGG 0.454324 8.1:-21217070 MS.gene62821:CDS
TTGCCCTCCTAATTGGTCTC+AGG 0.458583 8.1:-21217954 MS.gene62821:CDS
GTTGCACCATCCACCGTAAT+CGG 0.465140 8.1:+21217928 None:intergenic
TACCAAGCATTTGCAACACT+TGG 0.478453 8.1:-21216933 MS.gene62821:CDS
TATGGAAATTTGTTTCTGAA+TGG 0.491875 8.1:-21218118 MS.gene62821:CDS
CAAGCATTTGCAACACTTGG+TGG 0.494165 8.1:-21216930 MS.gene62821:CDS
AAAGGAGGAGCATGTGGGTA+TGG 0.494882 8.1:-21218136 MS.gene62821:intron
ATTAGGAGGGCAAATATTTG+TGG 0.499330 8.1:+21217964 None:intergenic
GCAAAGCCAGCTTTAGTAGC+GGG 0.501290 8.1:-21218632 MS.gene62821:CDS
GAATGTTGCTCCTTCCAACT+GGG 0.505072 8.1:-21216850 MS.gene62821:CDS
ATGTGCAAGAGTCCATGAAC+TGG 0.507085 8.1:+21218598 None:intergenic
AATGTGCCCGCTACTAAAGC+TGG 0.511601 8.1:+21218626 None:intergenic
GTGATGAATGTGGGAGGTGG+AGG 0.515112 8.1:-21217029 MS.gene62821:CDS
TACGTGATGAATGTGGGAGG+TGG 0.521955 8.1:-21217032 MS.gene62821:CDS
TGCAAAGCCAGCTTTAGTAG+CGG 0.523369 8.1:-21218633 MS.gene62821:CDS
CTTATTAAAGGAGGAGCATG+TGG 0.525297 8.1:-21218142 MS.gene62821:intron
GGATTTCGATTCTCTTTCCA+AGG 0.530783 8.1:-21217077 MS.gene62821:CDS
CCAAAGAAACTATAATAGCT+TGG 0.533024 8.1:-21216872 MS.gene62821:CDS
CACCAAGTGTTGCAAATGCT+TGG 0.541324 8.1:+21216931 None:intergenic
AAAATTGCACAGTGGAAGGC+CGG 0.541507 8.1:-21217863 MS.gene62821:CDS
GGTTAATCCAGCAGCCCAGT+TGG 0.542121 8.1:+21216836 None:intergenic
ATACATAACAGGGACGATAC+CGG 0.542921 8.1:+21217844 None:intergenic
CATGAAAATTGCACAGTGGA+AGG 0.550705 8.1:-21217867 MS.gene62821:CDS
GGTAAGAAGCACCCCAATTG+TGG 0.559335 8.1:+21216952 None:intergenic
ATTGGTGTACGTGATGAATG+TGG 0.559419 8.1:-21217039 MS.gene62821:CDS
TTCAATAATGGGTATGCATG+TGG 0.563755 8.1:-21218058 MS.gene62821:CDS
AATCCAGCAGCCCAGTTGGA+AGG 0.563994 8.1:+21216840 None:intergenic
AGGCATCCGATTACGGTGGA+TGG 0.564250 8.1:-21217934 MS.gene62821:CDS
TCGTCCCTGTTATGTATCGC+AGG 0.570292 8.1:-21217838 MS.gene62821:intron
TTGGTGTACGTGATGAATGT+GGG 0.577309 8.1:-21217038 MS.gene62821:CDS
TTCTTAGAGTGCCTTGCATG+AGG 0.577880 8.1:-21217106 MS.gene62821:intron
GATGCCTGAGACCAATTAGG+AGG 0.590186 8.1:+21217950 None:intergenic
GTGCCTTGCATGAGGAGTGA+AGG 0.590760 8.1:-21217098 MS.gene62821:CDS
GAGACAGCTTCTGCCACCAT+GGG 0.594645 8.1:-21218557 MS.gene62821:intron
GACTGTAGTGTAAGGAACAT+TGG 0.607957 8.1:+21217991 None:intergenic
TGAGACAGCTTCTGCCACCA+TGG 0.614492 8.1:-21218558 MS.gene62821:CDS
GAGGTGATATAGCAAACATG+TGG 0.614514 8.1:-21217010 MS.gene62821:CDS
TTAAAGGAAGTAGAACAGGA+TGG 0.614528 8.1:-21216986 MS.gene62821:CDS
AATCCTTCACTCCTCATGCA+AGG 0.617867 8.1:+21217095 None:intergenic
TCAATAATGGGTATGCATGT+GGG 0.626106 8.1:-21218057 MS.gene62821:CDS
TGTCTCATCGCCATAAAATG+TGG 0.626462 8.1:+21218574 None:intergenic
GTGGCAGTGACTGTAGTGTA+AGG 0.632028 8.1:+21217983 None:intergenic
ATGCCTGAGACCAATTAGGA+GGG 0.649082 8.1:+21217951 None:intergenic
TTATTAAAGGAGGAGCATGT+GGG 0.672893 8.1:-21218141 MS.gene62821:intron
TGTGCAAGAGTCCATGAACT+GGG 0.678559 8.1:+21218599 None:intergenic
AGGTGATATAGCAAACATGT+GGG 0.681494 8.1:-21217009 MS.gene62821:CDS
ATTAGCATGAGCCACAATTG+GGG 0.689678 8.1:-21216963 MS.gene62821:CDS
TCAATGAAAATTGACATGTG+TGG 0.690286 8.1:+21216809 None:intergenic
GTGTACGTGATGAATGTGGG+AGG 0.693958 8.1:-21217035 MS.gene62821:CDS
TCTCAGGCATCCGATTACGG+TGG 0.700337 8.1:-21217938 MS.gene62821:CDS
GAGATATAACTTACCCATGG+TGG 0.711843 8.1:+21218544 None:intergenic
TGTCAAAATGTGAACGTGGT+GGG 0.713445 8.1:+21217906 None:intergenic
ATGTCAAAATGTGAACGTGG+TGG 0.718706 8.1:+21217905 None:intergenic
ATTACCTGCGATACATAACA+GGG 0.735393 8.1:+21217834 None:intergenic
CCTTCATGAAAATTGCACAG+TGG 0.762866 8.1:-21217871 MS.gene62821:CDS
GACATGTCAAAATGTGAACG+TGG 0.763719 8.1:+21217902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAATTAAATAGTTTG+TGG - chr8.1:21217323-21217342 MS.gene62821:intron 10.0%
!! TATTCTATATTATATATATG+TGG + chr8.1:21217720-21217739 None:intergenic 10.0%
!! TTAATTATTTATATCTAGAA+GGG + chr8.1:21217315-21217334 None:intergenic 10.0%
!! TTTAATTATTTATATCTAGA+AGG + chr8.1:21217316-21217335 None:intergenic 10.0%
!! AGAATAGATTAATAACAAAA+TGG - chr8.1:21217734-21217753 MS.gene62821:intron 15.0%
!! ATATAGTGTTATACCAAAAA+AGG + chr8.1:21217068-21217087 None:intergenic 20.0%
!! GGTAACTAATTAAAATTTGA+TGG - chr8.1:21217344-21217363 MS.gene62821:intron 20.0%
!! TTATGTGACATTAGAAAATA+TGG + chr8.1:21217764-21217783 None:intergenic 20.0%
!!! AAAGATCAAATAACTACTTT+TGG + chr8.1:21218005-21218024 None:intergenic 20.0%
!!! AAATTTGATGGACTTATTAA+AGG - chr8.1:21217356-21217375 MS.gene62821:intron 20.0%
!!! GATTTACCAAATTTAAAATG+TGG + chr8.1:21217845-21217864 None:intergenic 20.0%
!!! GATTTATCAAATTTGAAACA+TGG + chr8.1:21217978-21217997 None:intergenic 20.0%
!!! TAATTTAGTGAGATTGATTT+TGG + chr8.1:21217044-21217063 None:intergenic 20.0%
! AACACATTATGCATGAAAAA+AGG + chr8.1:21218272-21218291 None:intergenic 25.0%
! AGTTCAACATTGTTCAATAA+TGG - chr8.1:21217440-21217459 MS.gene62821:intron 25.0%
! ATACAAAAGAGATATGTCTT+TGG - chr8.1:21218331-21218350 MS.gene62821:intron 25.0%
! ATGTAGTTATGTGATGTAAA+CGG - chr8.1:21218105-21218124 MS.gene62821:CDS 25.0%
! GGGAAAATTAGTATTAATTG+TGG + chr8.1:21217295-21217314 None:intergenic 25.0%
! GTTCAACATTGTTCAATAAT+GGG - chr8.1:21217441-21217460 MS.gene62821:intron 25.0%
! TAATCTTGAAAGAAAGAGTT+TGG + chr8.1:21218606-21218625 None:intergenic 25.0%
! TTTCAGTTAGGATTCAAATT+CGG + chr8.1:21217152-21217171 None:intergenic 25.0%
!! ATAAGAGTCCATATTTTCTA+TGG - chr8.1:21218065-21218084 MS.gene62821:CDS 25.0%
!! CATATCTCTTTTGTATGTTA+AGG + chr8.1:21218327-21218346 None:intergenic 25.0%
!!! AATGTCTGATTTTGATATGA+TGG + chr8.1:21217955-21217974 None:intergenic 25.0%
!!! AATTTGTTTCTGAATGGTTA+TGG - chr8.1:21217398-21217417 MS.gene62821:intron 25.0%
!!! ATTTGTTTCTGAATGGTTAT+GGG - chr8.1:21217399-21217418 MS.gene62821:intron 25.0%
!!! CTCACTAAATTAACCTTTTT+TGG - chr8.1:21217052-21217071 MS.gene62821:CDS 25.0%
!!! TATGGAAATTTGTTTCTGAA+TGG - chr8.1:21217392-21217411 MS.gene62821:intron 25.0%
AAAATTGACATGTGTGGAAT+AGG + chr8.1:21218698-21218717 None:intergenic 30.0%
ATCTGATCTTGATACAATCT+AGG - chr8.1:21218202-21218221 MS.gene62821:intron 30.0%
ATTGAGATATAACTTACCCA+TGG + chr8.1:21216972-21216991 None:intergenic 30.0%
CAAAGTTTGACCAACATTAT+TGG - chr8.1:21217208-21217227 MS.gene62821:intron 30.0%
CAATCATGGAAATGTCAATT+TGG + chr8.1:21218038-21218057 None:intergenic 30.0%
CATTGTGACCATAGAAAATA+TGG + chr8.1:21218076-21218095 None:intergenic 30.0%
CCAAAGAAACTATAATAGCT+TGG - chr8.1:21218638-21218657 MS.gene62821:CDS 30.0%
CCAAGCTATTATAGTTTCTT+TGG + chr8.1:21218641-21218660 None:intergenic 30.0%
GCATGAAAAAAGGTTGAATT+TGG + chr8.1:21218262-21218281 None:intergenic 30.0%
GGTCAAACATTATTTCAGTT+AGG + chr8.1:21217164-21217183 None:intergenic 30.0%
GTATCAATATTGTAGCTTCT+TGG - chr8.1:21216820-21216839 MS.gene62821:CDS 30.0%
TAAACGGTTAAATCAAAGAG+AGG - chr8.1:21218121-21218140 MS.gene62821:CDS 30.0%
TCAATGAAAATTGACATGTG+TGG + chr8.1:21218704-21218723 None:intergenic 30.0%
TTGTACATCAATTGCTGAAA+TGG + chr8.1:21217020-21217039 None:intergenic 30.0%
! GTTGCATCATTTGTCTTTTA+AGG - chr8.1:21218289-21218308 MS.gene62821:intron 30.0%
!! TTTGATGGACTTATTAAAGG+AGG - chr8.1:21217359-21217378 MS.gene62821:intron 30.0%
AATTACCTGCGATACATAAC+AGG + chr8.1:21217680-21217699 None:intergenic 35.0%
AGGTGATATAGCAAACATGT+GGG - chr8.1:21218501-21218520 MS.gene62821:intron 35.0%
ATAACCAATACCCATTTCCT+TGG + chr8.1:21218453-21218472 None:intergenic 35.0%
ATTACCTGCGATACATAACA+GGG + chr8.1:21217679-21217698 None:intergenic 35.0%
ATTAGGAGGGCAAATATTTG+TGG + chr8.1:21217549-21217568 None:intergenic 35.0%
CAAATATTTGCCCTCCTAAT+TGG - chr8.1:21217549-21217568 MS.gene62821:intron 35.0%
CTTGATTCAACATGATTGTG+TGG - chr8.1:21217899-21217918 MS.gene62821:CDS 35.0%
GATTCTCTTTCCAAGGAAAT+GGG - chr8.1:21218440-21218459 MS.gene62821:intron 35.0%
GCTATCGGATTAAAATCAGA+CGG - chr8.1:21217818-21217837 MS.gene62821:intron 35.0%
TGATGGTCAAAATCATGTGA+CGG + chr8.1:21217938-21217957 None:intergenic 35.0%
TTAAAGGAAGTAGAACAGGA+TGG - chr8.1:21218524-21218543 MS.gene62821:intron 35.0%
! ATAGCAAACATGTGGGTTAA+AGG - chr8.1:21218508-21218527 MS.gene62821:intron 35.0%
! GACGGTCCACATTTTAAATT+TGG - chr8.1:21217836-21217855 MS.gene62821:intron 35.0%
! GATACAATCTAGGTTGACAA+CGG - chr8.1:21218212-21218231 MS.gene62821:intron 35.0%
! TTATTAAAGGAGGAGCATGT+GGG - chr8.1:21217369-21217388 MS.gene62821:intron 35.0%
! TTTTGTCACGTGATCTATCT+AGG - chr8.1:21217796-21217815 MS.gene62821:intron 35.0%
!! AGGAAATGGGTATTGGTTAT+TGG - chr8.1:21218453-21218472 MS.gene62821:intron 35.0%
!! TCAATAATGGGTATGCATGT+GGG - chr8.1:21217453-21217472 MS.gene62821:intron 35.0%
!! TTCAATAATGGGTATGCATG+TGG - chr8.1:21217452-21217471 MS.gene62821:intron 35.0%
AACCGCAGTTCCAATAATGT+TGG + chr8.1:21217221-21217240 None:intergenic 40.0%
ACGTGATCTATCTAGGCTAT+CGG - chr8.1:21217803-21217822 MS.gene62821:intron 40.0%
ATACATAACAGGGACGATAC+CGG + chr8.1:21217669-21217688 None:intergenic 40.0%
ATGATAGTCCGTCAATCGTT+TGG + chr8.1:21217105-21217124 None:intergenic 40.0%
ATGTCAAAATGTGAACGTGG+TGG + chr8.1:21217608-21217627 None:intergenic 40.0%
ATTAGCATGAGCCACAATTG+GGG - chr8.1:21218547-21218566 MS.gene62821:intron 40.0%
ATTGGTGTACGTGATGAATG+TGG - chr8.1:21218471-21218490 MS.gene62821:intron 40.0%
CATGAAAATTGCACAGTGGA+AGG - chr8.1:21217643-21217662 MS.gene62821:intron 40.0%
CCTTCATGAAAATTGCACAG+TGG - chr8.1:21217639-21217658 MS.gene62821:intron 40.0%
CGATTCTCTTTCCAAGGAAA+TGG - chr8.1:21218439-21218458 MS.gene62821:intron 40.0%
CTTTCCAAGGAAATGGGTAT+TGG - chr8.1:21218446-21218465 MS.gene62821:intron 40.0%
GACATGTCAAAATGTGAACG+TGG + chr8.1:21217611-21217630 None:intergenic 40.0%
GACCAACATTATTGGAACTG+CGG - chr8.1:21217216-21217235 MS.gene62821:intron 40.0%
GACTGTAGTGTAAGGAACAT+TGG + chr8.1:21217522-21217541 None:intergenic 40.0%
GAGATATAACTTACCCATGG+TGG + chr8.1:21216969-21216988 None:intergenic 40.0%
GAGGTGATATAGCAAACATG+TGG - chr8.1:21218500-21218519 MS.gene62821:intron 40.0%
GATTAGCATGAGCCACAATT+GGG - chr8.1:21218546-21218565 MS.gene62821:intron 40.0%
GGATTTCGATTCTCTTTCCA+AGG - chr8.1:21218433-21218452 MS.gene62821:intron 40.0%
GGTAGTTCATGCTTCAACTT+TGG - chr8.1:21218142-21218161 MS.gene62821:intron 40.0%
TACCAAGCATTTGCAACACT+TGG - chr8.1:21218577-21218596 MS.gene62821:CDS 40.0%
TGGGTTAAAGGAAGTAGAAC+AGG - chr8.1:21218520-21218539 MS.gene62821:intron 40.0%
TGTCAAAATGTGAACGTGGT+GGG + chr8.1:21217607-21217626 None:intergenic 40.0%
TGTCTCATCGCCATAAAATG+TGG + chr8.1:21216939-21216958 None:intergenic 40.0%
TTGACATTTCCATGATTGCG+TGG - chr8.1:21218040-21218059 MS.gene62821:CDS 40.0%
TTGGTGTACGTGATGAATGT+GGG - chr8.1:21218472-21218491 MS.gene62821:intron 40.0%
TTTACCGACCAAACGATTGA+CGG - chr8.1:21217094-21217113 MS.gene62821:CDS 40.0%
! CCACTGTGCAATTTTCATGA+AGG + chr8.1:21217642-21217661 None:intergenic 40.0%
! CTTATTAAAGGAGGAGCATG+TGG - chr8.1:21217368-21217387 MS.gene62821:intron 40.0%
! CTTGCACATGCCACATTTTA+TGG - chr8.1:21216926-21216945 MS.gene62821:CDS 40.0%
! TGTGCAATTTTCATGAAGGC+AGG + chr8.1:21217638-21217657 None:intergenic 40.0%
AAAATTGCACAGTGGAAGGC+CGG - chr8.1:21217647-21217666 MS.gene62821:intron 45.0%
AATCCTTCACTCCTCATGCA+AGG + chr8.1:21218418-21218437 None:intergenic 45.0%
ATGCCTGAGACCAATTAGGA+GGG + chr8.1:21217562-21217581 None:intergenic 45.0%
ATGTGCAAGAGTCCATGAAC+TGG + chr8.1:21216915-21216934 None:intergenic 45.0%
CAAGCATTTGCAACACTTGG+TGG - chr8.1:21218580-21218599 MS.gene62821:CDS 45.0%
CTCTTATGTCCACGCAATCA+TGG + chr8.1:21218052-21218071 None:intergenic 45.0%
GAATGTTGCTCCTTCCAACT+GGG - chr8.1:21218660-21218679 MS.gene62821:CDS 45.0%
GCACATTTCAACCCAGTTCA+TGG - chr8.1:21216900-21216919 MS.gene62821:CDS 45.0%
TAGTCCGTCAATCGTTTGGT+CGG + chr8.1:21217101-21217120 None:intergenic 45.0%
TGTGCAAGAGTCCATGAACT+GGG + chr8.1:21216914-21216933 None:intergenic 45.0%
! CACCAAGTGTTGCAAATGCT+TGG + chr8.1:21218582-21218601 None:intergenic 45.0%
! GGATTAGCATGAGCCACAAT+TGG - chr8.1:21218545-21218564 MS.gene62821:intron 45.0%
! TGCAAAGCCAGCTTTAGTAG+CGG - chr8.1:21216877-21216896 MS.gene62821:CDS 45.0%
! TTCTTAGAGTGCCTTGCATG+AGG - chr8.1:21218404-21218423 MS.gene62821:intron 45.0%
!! AAAAATAAATAAAATAATGT+TGG + chr8.1:21217185-21217204 None:intergenic 5.0%
AATGTGCCCGCTACTAAAGC+TGG + chr8.1:21216887-21216906 None:intergenic 50.0%
GATGCCTGAGACCAATTAGG+AGG + chr8.1:21217563-21217582 None:intergenic 50.0%
GGAATGTTGCTCCTTCCAAC+TGG - chr8.1:21218659-21218678 MS.gene62821:CDS 50.0%
GTGGCAGTGACTGTAGTGTA+AGG + chr8.1:21217530-21217549 None:intergenic 50.0%
GTGTACGTGATGAATGTGGG+AGG - chr8.1:21218475-21218494 MS.gene62821:intron 50.0%
GTTGCACCATCCACCGTAAT+CGG + chr8.1:21217585-21217604 None:intergenic 50.0%
TACGTGATGAATGTGGGAGG+TGG - chr8.1:21218478-21218497 MS.gene62821:intron 50.0%
TCGGATGCCTGAGACCAATT+AGG + chr8.1:21217566-21217585 None:intergenic 50.0%
TCGTCCCTGTTATGTATCGC+AGG - chr8.1:21217672-21217691 MS.gene62821:intron 50.0%
TGGTCTCAGGCATCCGATTA+CGG - chr8.1:21217569-21217588 MS.gene62821:intron 50.0%
! AAAGGAGGAGCATGTGGGTA+TGG - chr8.1:21217374-21217393 MS.gene62821:intron 50.0%
! GCAAAGCCAGCTTTAGTAGC+GGG - chr8.1:21216878-21216897 MS.gene62821:CDS 50.0%
! TTGCCCTCCTAATTGGTCTC+AGG - chr8.1:21217556-21217575 MS.gene62821:intron 50.0%
!! GGTAAGAAGCACCCCAATTG+TGG + chr8.1:21218561-21218580 None:intergenic 50.0%
AATCCAGCAGCCCAGTTGGA+AGG + chr8.1:21218673-21218692 None:intergenic 55.0%
AGGCATCCGATTACGGTGGA+TGG - chr8.1:21217576-21217595 MS.gene62821:intron 55.0%
GAGACAGCTTCTGCCACCAT+GGG - chr8.1:21216953-21216972 MS.gene62821:CDS 55.0%
GGTTAATCCAGCAGCCCAGT+TGG + chr8.1:21218677-21218696 None:intergenic 55.0%
GTGATGAATGTGGGAGGTGG+AGG - chr8.1:21218481-21218500 MS.gene62821:intron 55.0%
GTGCCTTGCATGAGGAGTGA+AGG - chr8.1:21218412-21218431 MS.gene62821:intron 55.0%
TCTCAGGCATCCGATTACGG+TGG - chr8.1:21217572-21217591 MS.gene62821:intron 55.0%
TGAGACAGCTTCTGCCACCA+TGG - chr8.1:21216952-21216971 MS.gene62821:CDS 55.0%
GCTCCTTCCAACTGGGCTGC+TGG - chr8.1:21218667-21218686 MS.gene62821:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 21216809 21218723 21216809 ID=MS.gene62821
chr8.1 mRNA 21216809 21218723 21216809 ID=MS.gene62821.t1;Parent=MS.gene62821
chr8.1 exon 21218558 21218723 21218558 ID=MS.gene62821.t1.exon1;Parent=MS.gene62821.t1
chr8.1 CDS 21218558 21218723 21218558 ID=cds.MS.gene62821.t1;Parent=MS.gene62821.t1
chr8.1 exon 21217839 21218154 21217839 ID=MS.gene62821.t1.exon2;Parent=MS.gene62821.t1
chr8.1 CDS 21217839 21218154 21217839 ID=cds.MS.gene62821.t1;Parent=MS.gene62821.t1
chr8.1 exon 21216809 21217121 21216809 ID=MS.gene62821.t1.exon3;Parent=MS.gene62821.t1
chr8.1 CDS 21216809 21217121 21216809 ID=cds.MS.gene62821.t1;Parent=MS.gene62821.t1
Gene Sequence

>MS.gene62821

ATGGCTGCAATGTATCAATATTGTAGCTTCTTGGTTACAATTACAATTACACTGATGCTCACAATCATTGCAAAGCCAGCTTTAGTAGCGGGCACATTTCAACCCAGTTCATGGACTCTTGCACATGCCACATTTTATGGCGATGAGACAGCTTCTGCCACCATGGGTAAGTTATATCTCAATCTCTTAATTATTATCATTAGCTAAACCATTTCAGCAATTGATGTACAAGCCAAAATCAATCTCACTAAATTAACCTTTTTTGGTATAACACTATATTAACATTTTACCGACCAAACGATTGACGGACTATCATTTAAAACAAATTATTCAGAAGAATCCGAATTTGAATCCTAACTGAAATAATGTTTGACCAACATTATTTTATTTATTTTTTGACAAAGTTTGACCAACATTATTGGAACTGCGGTTAAGACAAACATTTAACATCTTACTTAAATAGTTTGTAAATCATTAGCATTACCACAATTAATACTAATTTTCCCTTCTAGATATAAATAATTAAATAGTTTGTGGTAACTAATTAAAATTTGATGGACTTATTAAAGGAGGAGCATGTGGGTATGGAAATTTGTTTCTGAATGGTTATGGGACAGACACAGCAGCATTGAGTTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGTGTTCAATCAAGTGCATGTAACACCAATGTTCCTTACACTACAGTCACTGCCACAAATATTTGCCCTCCTAATTGGTCTCAGGCATCCGATTACGGTGGATGGTGCAACCCACCACGTTCACATTTTGACATGTCTAAGCCTGCCTTCATGAAAATTGCACAGTGGAAGGCCGGTATCGTCCCTGTTATGTATCGCAGGTAATTAACAAATCAAGCTTGCTCCACATATATATAATATAGAATAGATTAATAACAAAATGGTCGTCCATATTTTCTAATGTCACATAAACATGCATTTGATTTTGTCACGTGATCTATCTAGGCTATCGGATTAAAATCAGACGGTCCACATTTTAAATTTGGTAAATCAAATTCAAAGTATAAAGTGAAAATGTGATCTAATCTTGATTCAACATGATTGTGTGGATACATATATTTACCGTCACATGATTTTGACCATCATATCAAAATCAGACATTCCATGTTTCAAATTTGATAAATCGAGTCCAAAAGTAGTTATTTGATCTTTATCTCGTAATCCAAATTGACATTTCCATGATTGCGTGGACATAAGAGTCCATATTTTCTATGGTCACAATGACACAATTGATGTAGTTATGTGATGTAAACGGTTAAATCAAAGAGAGGTAGTTCATGCTTCAACTTTGGTAAATTGCGTCTAAAATGCAAAGTTGAAATATCAATAATCTGATCTTGATACAATCTAGGTTGACAACGGCACGATTGTGTGATCACAAAGAATCCAAATTCAACCTTTTTTCATGCATAATGTGTTGCATCATTTGTCTTTTAAGGAGATTATTCTTACCTTAACATACAAAAGAGATATGTCTTTGGCTTTAGTGATATCGTACTTACAATGTGATTTGTTGATAAAAAAATTGAATTTCTTAGAGTGCCTTGCATGAGGAGTGAAGGATTTCGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTGTACGTGATGAATGTGGGAGGTGGAGGTGATATAGCAAACATGTGGGTTAAAGGAAGTAGAACAGGATGGATTAGCATGAGCCACAATTGGGGTGCTTCTTACCAAGCATTTGCAACACTTGGTGGCCAAACTCTTTCTTTCAAGATTACTTCTTACACAACCAAAGAAACTATAATAGCTTGGAATGTTGCTCCTTCCAACTGGGCTGCTGGATTAACCTATTCCACACATGTCAATTTTCATTGA
Protein sequence

>MS.gene62821.t1

MAAMYQYCSFLVTITITLMLTIIAKPALVAGTFQPSSWTLAHATFYGDETASATMGGACGYGNLFLNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACNTNVPYTTVTATNICPPNWSQASDYGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVPCMRSEGFRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLGGQTLSFKITSYTTKETIIAWNVAPSNWAAGLTYSTHVNFH