AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052105

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052105.t1 MTR_2g097030 98.846 260 3 0 1 260 1 260 0.0 534
MS.gene052105.t1 MTR_5g079950 86.694 248 33 0 13 260 12 259 6.20e-166 459
MS.gene052105.t1 MTR_4g063975 87.209 258 33 0 3 260 1 258 3.86e-163 452
MS.gene052105.t1 MTR_7g061720 81.783 258 47 0 3 260 1 258 3.53e-160 445
MS.gene052105.t1 MTR_3g094060 68.217 258 77 3 1 258 1 253 3.99e-127 361
MS.gene052105.t1 MTR_3g094040 67.451 255 79 2 6 258 1 253 1.91e-126 359
MS.gene052105.t1 MTR_5g041700 72.926 229 60 1 31 259 22 248 3.59e-125 356
MS.gene052105.t1 MTR_4g081950 68.093 257 72 4 1 255 32 280 2.91e-123 352
MS.gene052105.t1 MTR_5g075320 67.600 250 76 3 11 258 5 251 5.18e-122 348
MS.gene052105.t1 MTR_3g466760 66.275 255 80 2 4 258 12 260 3.53e-120 343
MS.gene052105.t1 MTR_3g466790 66.537 257 82 3 3 258 1 254 1.18e-119 342
MS.gene052105.t1 MTR_3g435430 71.111 225 63 1 34 258 25 247 5.67e-119 340
MS.gene052105.t1 MTR_7g011060 63.563 247 80 2 12 258 4 240 4.42e-112 322
MS.gene052105.t1 MTR_1g085460 66.079 227 73 3 33 256 29 254 1.61e-107 311
MS.gene052105.t1 MTR_1g026020 58.984 256 99 3 3 256 1 252 3.26e-107 310
MS.gene052105.t1 MTR_7g111010 59.289 253 95 4 4 253 1 248 6.63e-107 310
MS.gene052105.t1 MTR_7g110990 63.755 229 79 3 28 253 6 233 2.98e-105 305
MS.gene052105.t1 MTR_4g124340 59.031 227 90 2 32 257 59 283 7.25e-102 298
MS.gene052105.t1 MTR_6g012520 61.265 253 87 3 6 258 1 242 1.92e-99 290
MS.gene052105.t1 MTR_7g013150 55.556 252 105 2 5 256 6 250 3.97e-97 285
MS.gene052105.t1 MTR_8g464350 54.065 246 111 1 8 253 5 248 5.96e-96 282
MS.gene052105.t1 MTR_7g013140 53.725 255 110 2 1 255 1 247 6.23e-95 279
MS.gene052105.t1 MTR_8g058990 57.658 222 92 1 34 255 30 249 8.20e-94 276
MS.gene052105.t1 MTR_7g013120 56.696 224 94 2 34 256 29 250 3.11e-93 275
MS.gene052105.t1 MTR_4g102450 51.383 253 120 3 9 259 11 262 4.99e-92 272
MS.gene052105.t1 MTR_5g011210 50.602 249 121 2 9 256 12 259 6.93e-92 272
MS.gene052105.t1 MTR_5g076950 55.111 225 100 1 34 258 41 264 3.88e-88 263
MS.gene052105.t1 MTR_0040s0140 46.825 252 131 1 7 258 8 256 1.37e-86 258
MS.gene052105.t1 MTR_2g090255 44.961 258 136 1 1 258 1 252 7.59e-85 254
MS.gene052105.t1 MTR_3g064510 53.617 235 100 5 33 259 52 285 2.61e-81 246
MS.gene052105.t1 MTR_0008s0120 60.909 110 43 0 146 255 86 195 1.45e-41 141
MS.gene052105.t1 MTR_0008s0120 52.941 85 37 1 6 90 7 88 5.54e-22 90.9
MS.gene052105.t1 MTR_6g012500 42.286 175 85 3 100 258 106 280 3.23e-37 132
MS.gene052105.t1 MTR_2g090270 28.030 264 163 10 5 256 7 255 1.68e-23 96.3
MS.gene052105.t1 MTR_0122s0020 30.638 235 137 11 34 256 41 261 6.47e-21 89.4
MS.gene052105.t1 MTR_2g090265 27.863 262 160 11 10 256 6 253 1.46e-20 88.2
MS.gene052105.t1 MTR_4g028640 29.661 236 131 11 34 253 42 258 2.19e-19 85.1
MS.gene052105.t1 MTR_0118s0070 29.870 231 132 12 39 253 53 269 3.74e-17 79.3
MS.gene052105.t1 MTR_1g085365 57.143 56 24 0 203 258 4 59 9.29e-14 64.7
MS.gene052105.t1 MTR_0122s0020 32.022 178 96 10 34 200 41 204 7.91e-13 66.2
MS.gene052105.t1 MTR_4g075790 26.667 225 130 9 45 253 32 237 2.40e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052105.t1 AT2G39700 83.137 255 42 1 7 260 3 257 2.57e-163 452
MS.gene052105.t1 AT2G28950 84.825 257 39 0 4 260 1 257 1.15e-159 443
MS.gene052105.t1 AT3G55500 76.923 260 60 0 1 260 1 260 3.80e-155 432
MS.gene052105.t1 AT2G37640 78.486 251 54 0 10 260 12 262 1.89e-151 423
MS.gene052105.t1 AT5G02260 75.194 258 64 0 3 260 1 258 4.06e-149 417
MS.gene052105.t1 AT2G37640 80.952 210 40 0 51 260 28 237 2.95e-130 368
MS.gene052105.t1 AT1G69530 67.729 251 78 2 9 259 3 250 1.56e-122 349
MS.gene052105.t1 AT1G69530 67.729 251 78 2 9 259 3 250 1.56e-122 349
MS.gene052105.t1 AT1G69530 67.331 251 79 2 9 259 3 250 3.21e-121 347
MS.gene052105.t1 AT5G56320 65.234 256 85 3 6 260 1 253 4.81e-120 343
MS.gene052105.t1 AT5G56320 65.234 256 85 3 6 260 1 253 4.81e-120 343
MS.gene052105.t1 AT2G03090 70.996 231 64 2 29 259 26 253 1.63e-119 342
MS.gene052105.t1 AT5G56320 65.234 256 85 3 6 260 1 253 2.81e-119 343
MS.gene052105.t1 AT5G05290 63.780 254 84 3 6 258 9 255 1.16e-118 340
MS.gene052105.t1 AT2G40610 69.565 230 67 2 30 258 26 253 9.70e-116 332
MS.gene052105.t1 AT1G26770 69.796 245 71 2 16 259 7 249 2.08e-114 328
MS.gene052105.t1 AT1G26770 69.796 245 71 2 16 259 17 259 2.79e-114 328
MS.gene052105.t1 AT3G29030 66.372 226 67 2 34 259 38 254 2.84e-107 311
MS.gene052105.t1 AT4G01630 62.097 248 85 5 9 253 8 249 4.75e-107 310
MS.gene052105.t1 AT1G69530 61.355 251 64 3 9 259 3 220 2.62e-106 307
MS.gene052105.t1 AT1G69530 60.956 251 65 3 9 259 3 220 3.63e-105 305
MS.gene052105.t1 AT1G20190 61.803 233 80 3 24 254 22 247 3.04e-99 290
MS.gene052105.t1 AT5G39290 50.542 277 110 4 3 256 4 276 1.12e-95 282
MS.gene052105.t1 AT5G39270 50.542 277 110 4 3 256 4 276 2.12e-95 281
MS.gene052105.t1 AT1G62980 52.941 255 117 3 3 256 1 253 3.30e-92 273
MS.gene052105.t1 AT5G39300 51.136 264 112 5 6 256 14 273 1.11e-90 270
MS.gene052105.t1 AT5G39280 56.250 224 94 2 33 256 53 272 1.58e-90 269
MS.gene052105.t1 AT1G12560 54.008 237 105 4 25 259 28 262 7.25e-89 264
MS.gene052105.t1 AT3G03220 53.744 227 104 1 34 260 40 265 6.14e-87 259
MS.gene052105.t1 AT5G39310 55.357 224 95 3 34 256 90 309 2.88e-85 257
MS.gene052105.t1 AT4G38210 45.968 248 132 1 14 259 8 255 1.44e-79 240
MS.gene052105.t1 AT1G20190 60.106 188 72 2 69 254 2 188 2.06e-78 235
MS.gene052105.t1 AT3G15370 47.638 254 117 7 7 256 6 247 2.08e-75 230
MS.gene052105.t1 AT5G39260 52.000 225 98 3 33 256 44 259 7.43e-75 229
MS.gene052105.t1 AT3G15370 42.756 283 116 8 8 256 7 277 9.30e-69 214
MS.gene052105.t1 AT4G28250 30.085 236 138 10 34 256 36 257 1.32e-22 94.0
MS.gene052105.t1 AT2G20750 29.958 237 140 10 34 256 40 264 1.17e-21 91.7
MS.gene052105.t1 AT1G65680 30.213 235 135 11 34 253 47 267 2.56e-20 87.8
MS.gene052105.t1 AT4G28250 28.936 235 136 10 34 256 36 251 7.40e-19 83.6
MS.gene052105.t1 AT2G20750 30.857 175 99 7 34 197 40 203 8.95e-15 71.6
MS.gene052105.t1 AT4G28250 31.073 177 93 8 34 200 36 193 1.36e-13 68.2
MS.gene052105.t1 AT4G28250 31.034 174 91 8 34 197 36 190 4.79e-13 66.6
MS.gene052105.t1 AT3G60570 23.723 274 180 8 1 260 1 259 5.03e-13 67.4
MS.gene052105.t1 AT3G45970 25.352 213 137 9 52 253 14 215 5.20e-13 67.0
MS.gene052105.t1 AT4G17030 25.100 251 165 9 13 253 6 243 3.12e-12 65.1

Find 75 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCGTCGCACTTCCACTTCT+TGG 0.241176 2.3:+5679721 MS.gene052105:CDS
GGAACATTGCTCCACATAAT+TGG 0.246045 2.3:+5679742 MS.gene052105:CDS
GCTCCACATAATTGGCAATT+TGG 0.259736 2.3:+5679750 MS.gene052105:CDS
TCACTAGGTTGAGCAAAATT+AGG 0.282502 2.3:-5678708 None:intergenic
TTGGCAATCAAATTCAGTTT+TGG 0.302765 2.3:+5679662 MS.gene052105:CDS
GACAAGCAGTGGTGTCATTC+TGG 0.336967 2.3:+5678645 MS.gene052105:CDS
TATGTTAAGGGCACTAAAAC+AGG 0.337612 2.3:+5679606 MS.gene052105:CDS
GGATGCCAATGAGCAGAAAC+TGG 0.338905 2.3:+5679631 MS.gene052105:CDS
GTTAGTTGCTGTGATGAAAA+TGG 0.339967 2.3:-5678676 None:intergenic
TTAGGAGGAGCATGTGGATA+TGG 0.344997 2.3:+5678516 MS.gene052105:intron
ATAAATGGGTATGGTGAGTA+TGG 0.345079 2.3:+5678216 None:intergenic
GTCCTAATCAGCAACGTTGC+AGG 0.348958 2.3:+5679561 MS.gene052105:CDS
GTAGGAAGCGTGGTGGGATT+AGG 0.372081 2.3:+5679505 MS.gene052105:CDS
CACCTGCAACGTTGCTGATT+AGG 0.375478 2.3:-5679563 None:intergenic
GCTTTGTCCTTCAGAGTTAC+CGG 0.383935 2.3:+5679693 MS.gene052105:CDS
CAATTTGGTCAAACTTTCAC+TGG 0.389947 2.3:+5679765 MS.gene052105:CDS
ATCAGCAACGTTGCAGGTGC+AGG 0.391465 2.3:+5679567 MS.gene052105:CDS
GGGATTAGGTTCACAATAAA+CGG 0.397891 2.3:+5679519 MS.gene052105:CDS
AAAGGCGACAGGGACGATTC+CGG 0.402838 2.3:-5678811 None:intergenic
TACGGAGGTTCCGATGCTTC+CGG 0.415576 2.3:+5678343 MS.gene052105:CDS
TATAGTGAGGACCTATGTTA+AGG 0.434796 2.3:+5679593 MS.gene052105:CDS
AACTTGTATAGTCAAGGTTA+TGG 0.443205 2.3:+5678540 MS.gene052105:CDS
TCGTCCCTGTCGCCTTTCGC+CGG 0.466817 2.3:+5678817 MS.gene052105:CDS
TGACCAAATTGCCAATTATG+TGG 0.467767 2.3:-5679753 None:intergenic
ACAAACCGGCGAAAGGCGAC+AGG 0.470017 2.3:-5678822 None:intergenic
TCCGATGCTTCCGGCACCAT+GGG 0.492789 2.3:+5678352 MS.gene052105:CDS
ATCCCACCACGCTTCCTACA+TGG 0.515202 2.3:-5679501 None:intergenic
ATAGTGAGGACCTATGTTAA+GGG 0.521329 2.3:+5679594 MS.gene052105:CDS
GCACCACCATTGTAAACACC+TGG 0.523553 2.3:-5678295 None:intergenic
ACCCATGGTGCCGGAAGCAT+CGG 0.533485 2.3:-5678353 None:intergenic
TGGAGCAATGTTCCAAGAAG+TGG 0.536985 2.3:-5679733 None:intergenic
GATGCCAATGAGCAGAAACT+GGG 0.559055 2.3:+5679632 MS.gene052105:CDS
TCAGCAACGTTGCAGGTGCA+GGG 0.562393 2.3:+5679568 MS.gene052105:CDS
TTCCGATGCTTCCGGCACCA+TGG 0.566242 2.3:+5678351 MS.gene052105:CDS
TTCAACAATGGACTAAGTTG+TGG 0.574416 2.3:+5678594 MS.gene052105:CDS
GTAGGGTACAAACCGGCGAA+AGG 0.576269 2.3:-5678829 None:intergenic
ATGGTAAATGCTAGAATCCC+AGG 0.576542 2.3:+5678277 MS.gene052105:CDS
GGAAGTGCGACGGTCACTAC+CGG 0.579926 2.3:-5679712 None:intergenic
CACCAACCACCATTGTCACT+AGG 0.581152 2.3:-5678723 None:intergenic
TATGGAAACTTGTATAGTCA+AGG 0.585100 2.3:+5678534 MS.gene052105:CDS
GTCACTACCGGTAACTCTGA+AGG 0.588519 2.3:-5679700 None:intergenic
ATCCCAGGTGTTTACAATGG+TGG 0.596482 2.3:+5678292 MS.gene052105:CDS
ACTAGACGTACCCATGGTGC+CGG 0.607745 2.3:-5678362 None:intergenic
TTTGCTCAACCTAGTGACAA+TGG 0.609073 2.3:+5678714 MS.gene052105:CDS
GCAAGATCAAAGTGAGGACG+AGG 0.609633 2.3:-5678753 None:intergenic
TCCAAGAAGTGGAAGTGCGA+CGG 0.611335 2.3:-5679722 None:intergenic
TATGTCACTAACAATGTGGA+TGG 0.613645 2.3:+5678258 MS.gene052105:CDS
AACCTAGTGACAATGGTGGT+TGG 0.618881 2.3:+5678721 MS.gene052105:CDS
CAGCAACGTTGCAGGTGCAG+GGG 0.618959 2.3:+5679569 MS.gene052105:CDS
GATTATGCAGGGTGCCATGT+AGG 0.619428 2.3:+5679487 MS.gene052105:intron
TGCCATGTAGGAAGCGTGGT+GGG 0.620597 2.3:+5679499 MS.gene052105:CDS
TTAGGACTAAGTTAAAGTAA+CGG 0.623009 2.3:-5679545 None:intergenic
GTGTGTTTAGGAGGAGCATG+TGG 0.626776 2.3:+5678510 MS.gene052105:intron
AGATCAAAGTGAGGACGAGG+AGG 0.633474 2.3:-5678750 None:intergenic
CTAGGTTGAGCAAAATTAGG+AGG 0.633552 2.3:-5678705 None:intergenic
CAAACCGGCGAAAGGCGACA+GGG 0.633653 2.3:-5678821 None:intergenic
AAAATTGCTGAATATCGCGC+CGG 0.644009 2.3:+5678792 MS.gene052105:CDS
CACCACCATTGTAAACACCT+GGG 0.648144 2.3:-5678294 None:intergenic
GTGTTTACAATGGTGGTGCA+TGG 0.652108 2.3:+5678299 MS.gene052105:CDS
AGCACAGCACTATTCAACAA+TGG 0.654867 2.3:+5678582 MS.gene052105:CDS
GTGCCATGTAGGAAGCGTGG+TGG 0.655283 2.3:+5679498 MS.gene052105:CDS
AGAATCCCAGGTGTTTACAA+TGG 0.660050 2.3:+5678289 MS.gene052105:CDS
GTTGCTGTGATGAAAATGGA+AGG 0.660102 2.3:-5678672 None:intergenic
ATGTTAAGGGCACTAAAACA+GGG 0.661896 2.3:+5679607 MS.gene052105:CDS
TTATTATGTCACTAACAATG+TGG 0.670910 2.3:+5678254 MS.gene052105:CDS
CAGGTGCAGGGGATATAGTG+AGG 0.673660 2.3:+5679580 MS.gene052105:CDS
ATGCCAATGAGCAGAAACTG+GGG 0.677827 2.3:+5679633 MS.gene052105:CDS
GATCAAAGTGAGGACGAGGA+GGG 0.681799 2.3:-5678749 None:intergenic
AGGGTGCCATGTAGGAAGCG+TGG 0.699181 2.3:+5679495 MS.gene052105:intron
TGCCAATGAGCAGAAACTGG+GGG 0.704067 2.3:+5679634 MS.gene052105:CDS
TTGCTGTGATGAAAATGGAA+GGG 0.708603 2.3:-5678671 None:intergenic
GGCATGGCAAGATCAAAGTG+AGG 0.710022 2.3:-5678759 None:intergenic
GCTCAACCTAGTGACAATGG+TGG 0.714318 2.3:+5678717 MS.gene052105:CDS
AGTGTGCAAATGACAAGCAG+TGG 0.728732 2.3:+5678634 MS.gene052105:CDS
TTAAGGGCACTAAAACAGGG+TGG 0.761599 2.3:+5679610 MS.gene052105:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAAAATAGTTTATGA+AGG + chr2.3:5679269-5679288 MS.gene052105:intron 15.0%
!!! AATAAGAAGTATATAGATAA+TGG + chr2.3:5679047-5679066 MS.gene052105:intron 15.0%
!!! ATAAGAAGTATATAGATAAT+GGG + chr2.3:5679048-5679067 MS.gene052105:intron 15.0%
!!! ATATATAAGCACTTTTATTA+GGG - chr2.3:5679155-5679174 None:intergenic 15.0%
!!! TATATATAAGCACTTTTATT+AGG - chr2.3:5679156-5679175 None:intergenic 15.0%
!! ATTAGTTATTTATTCCAACA+TGG - chr2.3:5679091-5679110 None:intergenic 20.0%
!!! ATCTCTAGTTTATATCTATT+TGG + chr2.3:5679442-5679461 MS.gene052105:intron 20.0%
!!! TGCTCTATTAAAATTGATTT+TGG + chr2.3:5678865-5678884 MS.gene052105:intron 20.0%
! AGCAAATAAGCAAAAATGTA+GGG - chr2.3:5678849-5678868 None:intergenic 25.0%
! GAAAACATCTTATGACTTAT+AGG - chr2.3:5679220-5679239 None:intergenic 25.0%
! TTAGGACTAAGTTAAAGTAA+CGG - chr2.3:5679548-5679567 None:intergenic 25.0%
! TTATTATGTCACTAACAATG+TGG + chr2.3:5678254-5678273 MS.gene052105:CDS 25.0%
!! AAGTAAATAAGCCTTATCTA+AGG - chr2.3:5679388-5679407 None:intergenic 25.0%
!! GGATTGACATAATTTTTGTT+AGG - chr2.3:5679358-5679377 None:intergenic 25.0%
!! TTTGTTATGTTGATTATGCA+GGG + chr2.3:5679476-5679495 MS.gene052105:intron 25.0%
!!! TAGATAATGGGAGAATAAAT+TGG + chr2.3:5679060-5679079 MS.gene052105:intron 25.0%
!!! TTTTCTTAACTTCTTTGAAG+TGG - chr2.3:5679248-5679267 None:intergenic 25.0%
!!! TTTTGTTATGTTGATTATGC+AGG + chr2.3:5679475-5679494 MS.gene052105:intron 25.0%
AAACAAACACTTGATGTCAT+CGG - chr2.3:5678899-5678918 None:intergenic 30.0%
AACTTGTATAGTCAAGGTTA+TGG + chr2.3:5678540-5678559 MS.gene052105:CDS 30.0%
ATAAATTGGTAAGACCATGT+TGG + chr2.3:5679074-5679093 MS.gene052105:intron 30.0%
GAGCAAATAAGCAAAAATGT+AGG - chr2.3:5678850-5678869 None:intergenic 30.0%
TATGGAAACTTGTATAGTCA+AGG + chr2.3:5678534-5678553 MS.gene052105:CDS 30.0%
TGTGATAGATCTCAATGATA+AGG + chr2.3:5679007-5679026 MS.gene052105:intron 30.0%
! TTGGCAATCAAATTCAGTTT+TGG + chr2.3:5679662-5679681 MS.gene052105:CDS 30.0%
!! AATTTTAAGGAACATAGGCA+TGG - chr2.3:5678778-5678797 None:intergenic 30.0%
!! CAAGTGTTTGTTTGATTTTG+TGG + chr2.3:5678906-5678925 MS.gene052105:intron 30.0%
!! CAATCAAATTCAGTTTTGGT+GGG + chr2.3:5679666-5679685 MS.gene052105:CDS 30.0%
!! TCAGCAATTTTAAGGAACAT+AGG - chr2.3:5678783-5678802 None:intergenic 30.0%
!!! TTTGCCTTTTTTGTGTGTTT+AGG + chr2.3:5678498-5678517 MS.gene052105:intron 30.0%
ATAGTGAGGACCTATGTTAA+GGG + chr2.3:5679594-5679613 MS.gene052105:CDS 35.0%
ATCCAAACATGCCTTAGATA+AGG + chr2.3:5679374-5679393 MS.gene052105:intron 35.0%
CAAAAATGTAGGGTACAAAC+CGG - chr2.3:5678839-5678858 None:intergenic 35.0%
CAATTTGGTCAAACTTTCAC+TGG + chr2.3:5679765-5679784 MS.gene052105:CDS 35.0%
GGGATTAGGTTCACAATAAA+CGG + chr2.3:5679519-5679538 MS.gene052105:CDS 35.0%
GTTAGTTGCTGTGATGAAAA+TGG - chr2.3:5678679-5678698 None:intergenic 35.0%
TATAGTGAGGACCTATGTTA+AGG + chr2.3:5679593-5679612 MS.gene052105:CDS 35.0%
TATGTCACTAACAATGTGGA+TGG + chr2.3:5678258-5678277 MS.gene052105:CDS 35.0%
TCCTCCTAAACACACAAAAA+AGG - chr2.3:5678505-5678524 None:intergenic 35.0%
TGACCAAATTGCCAATTATG+TGG - chr2.3:5679756-5679775 None:intergenic 35.0%
TTGCTGTGATGAAAATGGAA+GGG - chr2.3:5678674-5678693 None:intergenic 35.0%
! CGCGATATTCAGCAATTTTA+AGG - chr2.3:5678791-5678810 None:intergenic 35.0%
! TCACTAGGTTGAGCAAAATT+AGG - chr2.3:5678711-5678730 None:intergenic 35.0%
!! ATGTTAAGGGCACTAAAACA+GGG + chr2.3:5679607-5679626 MS.gene052105:CDS 35.0%
!! GCAATCAAATTCAGTTTTGG+TGG + chr2.3:5679665-5679684 MS.gene052105:CDS 35.0%
!! TATGTTAAGGGCACTAAAAC+AGG + chr2.3:5679606-5679625 MS.gene052105:CDS 35.0%
!! TTCAACAATGGACTAAGTTG+TGG + chr2.3:5678594-5678613 MS.gene052105:CDS 35.0%
!!! TGTTTTAGTGCCCTTAACAT+AGG - chr2.3:5679607-5679626 None:intergenic 35.0%
AAAATTGCTGAATATCGCGC+CGG + chr2.3:5678792-5678811 MS.gene052105:CDS 40.0%
AGAATCCCAGGTGTTTACAA+TGG + chr2.3:5678289-5678308 MS.gene052105:CDS 40.0%
AGCACAGCACTATTCAACAA+TGG + chr2.3:5678582-5678601 MS.gene052105:CDS 40.0%
ATGGTAAATGCTAGAATCCC+AGG + chr2.3:5678277-5678296 MS.gene052105:CDS 40.0%
GCTCCACATAATTGGCAATT+TGG + chr2.3:5679750-5679769 MS.gene052105:CDS 40.0%
GGAACATTGCTCCACATAAT+TGG + chr2.3:5679742-5679761 MS.gene052105:CDS 40.0%
GTTGCTGTGATGAAAATGGA+AGG - chr2.3:5678675-5678694 None:intergenic 40.0%
TTTAGTACTAGACGTACCCA+TGG - chr2.3:5678371-5678390 None:intergenic 40.0%
TTTGCTCAACCTAGTGACAA+TGG + chr2.3:5678714-5678733 MS.gene052105:CDS 40.0%
! AGCCTTATCTAAGGCATGTT+TGG - chr2.3:5679379-5679398 None:intergenic 40.0%
! CTAGGTTGAGCAAAATTAGG+AGG - chr2.3:5678708-5678727 None:intergenic 40.0%
!!! ACAGCTCATGCCACTTTTTA+CGG + chr2.3:5678325-5678344 MS.gene052105:CDS 40.0%
!!! GCCTTTTTTGTGTGTTTAGG+AGG + chr2.3:5678501-5678520 MS.gene052105:intron 40.0%
AACCTAGTGACAATGGTGGT+TGG + chr2.3:5678721-5678740 MS.gene052105:CDS 45.0%
AGTGTGCAAATGACAAGCAG+TGG + chr2.3:5678634-5678653 MS.gene052105:CDS 45.0%
ATCCCAGGTGTTTACAATGG+TGG + chr2.3:5678292-5678311 MS.gene052105:CDS 45.0%
ATCGGAACCTCCGTAAAAAG+TGG - chr2.3:5678338-5678357 None:intergenic 45.0%
ATGCCAATGAGCAGAAACTG+GGG + chr2.3:5679633-5679652 MS.gene052105:CDS 45.0%
CACCACCATTGTAAACACCT+GGG - chr2.3:5678297-5678316 None:intergenic 45.0%
GATGCCAATGAGCAGAAACT+GGG + chr2.3:5679632-5679651 MS.gene052105:CDS 45.0%
GCTTTGTCCTTCAGAGTTAC+CGG + chr2.3:5679693-5679712 MS.gene052105:CDS 45.0%
TGGAGCAATGTTCCAAGAAG+TGG - chr2.3:5679736-5679755 None:intergenic 45.0%
! GTGTTTACAATGGTGGTGCA+TGG + chr2.3:5678299-5678318 MS.gene052105:CDS 45.0%
! TTAGGAGGAGCATGTGGATA+TGG + chr2.3:5678516-5678535 MS.gene052105:intron 45.0%
!! TTAAGGGCACTAAAACAGGG+TGG + chr2.3:5679610-5679629 MS.gene052105:CDS 45.0%
AGATCAAAGTGAGGACGAGG+AGG - chr2.3:5678753-5678772 None:intergenic 50.0%
CACCAACCACCATTGTCACT+AGG - chr2.3:5678726-5678745 None:intergenic 50.0%
GATCAAAGTGAGGACGAGGA+GGG - chr2.3:5678752-5678771 None:intergenic 50.0%
GCAAGATCAAAGTGAGGACG+AGG - chr2.3:5678756-5678775 None:intergenic 50.0%
GCACCACCATTGTAAACACC+TGG - chr2.3:5678298-5678317 None:intergenic 50.0%
GCAGAAACTGGGGGCAAAAT+TGG + chr2.3:5679643-5679662 MS.gene052105:CDS 50.0%
GCTCAACCTAGTGACAATGG+TGG + chr2.3:5678717-5678736 MS.gene052105:CDS 50.0%
GGATGCCAATGAGCAGAAAC+TGG + chr2.3:5679631-5679650 MS.gene052105:CDS 50.0%
GGCATGGCAAGATCAAAGTG+AGG - chr2.3:5678762-5678781 None:intergenic 50.0%
GTCACTACCGGTAACTCTGA+AGG - chr2.3:5679703-5679722 None:intergenic 50.0%
GTCCTAATCAGCAACGTTGC+AGG + chr2.3:5679561-5679580 MS.gene052105:CDS 50.0%
TGCCAATGAGCAGAAACTGG+GGG + chr2.3:5679634-5679653 MS.gene052105:CDS 50.0%
! CACCTGCAACGTTGCTGATT+AGG - chr2.3:5679566-5679585 None:intergenic 50.0%
! GATTATGCAGGGTGCCATGT+AGG + chr2.3:5679487-5679506 MS.gene052105:intron 50.0%
! GTGTGTTTAGGAGGAGCATG+TGG + chr2.3:5678510-5678529 MS.gene052105:intron 50.0%
! TCCAAGAAGTGGAAGTGCGA+CGG - chr2.3:5679725-5679744 None:intergenic 50.0%
!! GACAAGCAGTGGTGTCATTC+TGG + chr2.3:5678645-5678664 MS.gene052105:CDS 50.0%
!!! GCTCATGCCACTTTTTACGG+AGG + chr2.3:5678328-5678347 MS.gene052105:CDS 50.0%
AAAGGCGACAGGGACGATTC+CGG - chr2.3:5678814-5678833 None:intergenic 55.0%
ACCGTCGCACTTCCACTTCT+TGG + chr2.3:5679721-5679740 MS.gene052105:CDS 55.0%
ACTAGACGTACCCATGGTGC+CGG - chr2.3:5678365-5678384 None:intergenic 55.0%
ATCAGCAACGTTGCAGGTGC+AGG + chr2.3:5679567-5679586 MS.gene052105:CDS 55.0%
ATCCCACCACGCTTCCTACA+TGG - chr2.3:5679504-5679523 None:intergenic 55.0%
CAGGTGCAGGGGATATAGTG+AGG + chr2.3:5679580-5679599 MS.gene052105:CDS 55.0%
GTAGGGTACAAACCGGCGAA+AGG - chr2.3:5678832-5678851 None:intergenic 55.0%
TACGGAGGTTCCGATGCTTC+CGG + chr2.3:5678343-5678362 MS.gene052105:CDS 55.0%
TCAGCAACGTTGCAGGTGCA+GGG + chr2.3:5679568-5679587 MS.gene052105:CDS 55.0%
TGCCCCCAGTTTCTGCTCAT+TGG - chr2.3:5679639-5679658 None:intergenic 55.0%
! GTAGGAAGCGTGGTGGGATT+AGG + chr2.3:5679505-5679524 MS.gene052105:CDS 55.0%
! TGCCATGTAGGAAGCGTGGT+GGG + chr2.3:5679499-5679518 MS.gene052105:CDS 55.0%
ACAAACCGGCGAAAGGCGAC+AGG - chr2.3:5678825-5678844 None:intergenic 60.0%
CAAACCGGCGAAAGGCGACA+GGG - chr2.3:5678824-5678843 None:intergenic 60.0%
CAGCAACGTTGCAGGTGCAG+GGG + chr2.3:5679569-5679588 MS.gene052105:CDS 60.0%
TCCGATGCTTCCGGCACCAT+GGG + chr2.3:5678352-5678371 MS.gene052105:CDS 60.0%
TTCCGATGCTTCCGGCACCA+TGG + chr2.3:5678351-5678370 MS.gene052105:CDS 60.0%
! ACCCATGGTGCCGGAAGCAT+CGG - chr2.3:5678356-5678375 None:intergenic 60.0%
! AGGGTGCCATGTAGGAAGCG+TGG + chr2.3:5679495-5679514 MS.gene052105:intron 60.0%
! GGAAGTGCGACGGTCACTAC+CGG - chr2.3:5679715-5679734 None:intergenic 60.0%
! GTGCCATGTAGGAAGCGTGG+TGG + chr2.3:5679498-5679517 MS.gene052105:CDS 60.0%
TCGTCCCTGTCGCCTTTCGC+CGG + chr2.3:5678817-5678836 MS.gene052105:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5678220 5679806 5678220 ID=MS.gene052105
chr2.3 mRNA 5678220 5679806 5678220 ID=MS.gene052105.t1;Parent=MS.gene052105
chr2.3 exon 5678220 5678373 5678220 ID=MS.gene052105.t1.exon1;Parent=MS.gene052105.t1
chr2.3 CDS 5678220 5678373 5678220 ID=cds.MS.gene052105.t1;Parent=MS.gene052105.t1
chr2.3 exon 5678520 5678838 5678520 ID=MS.gene052105.t1.exon2;Parent=MS.gene052105.t1
chr2.3 CDS 5678520 5678838 5678520 ID=cds.MS.gene052105.t1;Parent=MS.gene052105.t1
chr2.3 exon 5679497 5679806 5679497 ID=MS.gene052105.t1.exon3;Parent=MS.gene052105.t1
chr2.3 CDS 5679497 5679806 5679497 ID=cds.MS.gene052105.t1;Parent=MS.gene052105.t1
Gene Sequence

>MS.gene052105

ATGGGTATGGTGAGTATGGTTTACATTGTGACTCTTATTATGTCACTAACAATGTGGATGGTAAATGCTAGAATCCCAGGTGTTTACAATGGTGGTGCATGGCAAACAGCTCATGCCACTTTTTACGGAGGTTCCGATGCTTCCGGCACCATGGGTACGTCTAGTACTAAAATAAATAACGTTATAACACATTAATATAACATGCTTTTGTTATTAGATTCAGTTTTTGTCGCTTTGATTCGTAAATATAAAAAAAAAAATGAACGATGTTGTGACTGTTTGCCTTTTTTGTGTGTTTAGGAGGAGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGAGTTAACACAGCAGCATTAAGCACAGCACTATTCAACAATGGACTAAGTTGTGGTTCTTGTTTTGAATTGAAGTGTGCAAATGACAAGCAGTGGTGTCATTCTGGTAGCCCTTCCATTTTCATCACAGCAACTAACTTTTGTCCTCCTAATTTTGCTCAACCTAGTGACAATGGTGGTTGGTGTAACCCTCCTCGTCCTCACTTTGATCTTGCCATGCCTATGTTCCTTAAAATTGCTGAATATCGCGCCGGAATCGTCCCTGTCGCCTTTCGCCGGTTTGTACCCTACATTTTTGCTTATTTGCTCTATTAAAATTGATTTTGGCATAATAACCGATGACATCAAGTGTTTGTTTGATTTTGTGGTGATAAAAGAATGATTTTGAATGAATTAATTTTATAGAACTTATTTTAGCTTAAATGACTTGAATGTTAAATGATTTTTGTGATAGATCTCAATGATAAGGAAAAAAAAAAAAAGTAGAATAAGAAGTATATAGATAATGGGAGAATAAATTGGTAAGACCATGTTGGAATAAATAACTAATTTGCAGCTTCACATTTATCATCATAAGTGCTTATACATAAACCCTAATAAAAGTGCTTATATATAATCTATTTTTATAATAAGTGAGAATTAAGTTAAGCTATTTTCCTATAAGTCATAAGATGTTTTCATCAACCACTTCAAAGAAGTTAAGAAAATAAACTTAAAATAGTTTATGAAGGATGTCATAAGCTTTTGTAAATAAATAAATAAATACAATGTCATAACTTATTTGCATAAGTTCTCCTAACAAAAATTATGTCAATCCAAACATGCCTTAGATAAGGCTTATTTACTTAGCTAAAGAACACTAGTATAACTAATTCATTTTTATCTCTAGTTTATATCTATTTGGATTTTATTAATTTTGTTATGTTGATTATGCAGGGTGCCATGTAGGAAGCGTGGTGGGATTAGGTTCACAATAAACGGATTCCGTTACTTTAACTTAGTCCTAATCAGCAACGTTGCAGGTGCAGGGGATATAGTGAGGACCTATGTTAAGGGCACTAAAACAGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCAGTTTTGGTGGGTCAAGCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCTCCACATAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTCGTGTTTGA
Protein sequence

>MS.gene052105.t1

MGMVSMVYIVTLIMSLTMWMVNARIPGVYNGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCANDKQWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTKTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNIAPHNWQFGQTFTGKNFRV