AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011449

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011449.t1 MTR_4g102450 95.076 264 11 1 1 264 1 262 0.0 516
MS.gene011449.t1 MTR_5g011210 77.273 264 59 1 1 264 1 263 5.23e-155 432
MS.gene011449.t1 MTR_5g079950 53.333 255 116 3 11 264 6 258 7.42e-95 280
MS.gene011449.t1 MTR_2g097030 50.195 257 125 3 9 264 5 259 2.85e-92 273
MS.gene011449.t1 MTR_7g061720 51.172 256 121 4 11 264 4 257 3.46e-89 265
MS.gene011449.t1 MTR_4g063975 50.189 265 123 5 1 264 1 257 1.21e-86 259
MS.gene011449.t1 MTR_7g111010 50.391 256 119 4 11 263 4 254 7.80e-86 256
MS.gene011449.t1 MTR_1g085460 53.219 233 105 3 34 263 26 257 1.13e-85 256
MS.gene011449.t1 MTR_5g041700 51.600 250 110 5 11 258 3 243 4.56e-85 254
MS.gene011449.t1 MTR_7g110990 55.022 229 99 3 38 263 12 239 1.33e-84 253
MS.gene011449.t1 MTR_3g094040 50.198 253 118 5 9 258 2 249 5.14e-84 252
MS.gene011449.t1 MTR_4g081950 55.605 223 93 4 38 258 61 279 5.60e-84 253
MS.gene011449.t1 MTR_3g094060 50.988 253 111 5 9 258 7 249 6.53e-84 251
MS.gene011449.t1 MTR_3g435430 54.709 223 95 4 38 258 25 243 7.26e-83 249
MS.gene011449.t1 MTR_7g011060 51.230 244 107 4 16 258 4 236 1.52e-81 245
MS.gene011449.t1 MTR_8g058990 52.609 230 103 4 36 263 28 253 1.06e-80 243
MS.gene011449.t1 MTR_5g075320 53.394 221 99 3 38 257 29 246 1.06e-80 243
MS.gene011449.t1 MTR_7g013140 49.606 254 118 4 11 263 7 251 7.60e-80 241
MS.gene011449.t1 MTR_8g464350 47.490 259 125 5 7 263 5 254 1.01e-79 241
MS.gene011449.t1 MTR_1g026020 50.215 233 113 2 33 263 24 255 1.46e-79 241
MS.gene011449.t1 MTR_3g466760 47.104 259 133 3 1 258 1 256 4.23e-79 239
MS.gene011449.t1 MTR_7g013120 49.412 255 119 5 11 263 7 253 4.68e-79 239
MS.gene011449.t1 MTR_4g124340 47.899 238 119 4 22 257 45 279 4.98e-79 240
MS.gene011449.t1 MTR_3g466790 49.600 250 120 4 9 257 5 249 3.79e-78 237
MS.gene011449.t1 MTR_7g013150 50.877 228 108 3 37 263 29 253 2.79e-76 232
MS.gene011449.t1 MTR_0040s0140 44.628 242 130 3 18 258 14 252 4.25e-69 214
MS.gene011449.t1 MTR_6g012520 50.000 250 112 4 9 258 2 238 9.66e-69 213
MS.gene011449.t1 MTR_2g090255 40.496 242 142 2 18 258 8 248 1.40e-65 205
MS.gene011449.t1 MTR_5g076950 46.188 223 119 1 36 258 39 260 1.43e-64 202
MS.gene011449.t1 MTR_3g064510 45.148 237 109 7 36 258 51 280 3.79e-60 192
MS.gene011449.t1 MTR_0008s0120 33.772 228 93 4 36 263 30 199 3.96e-32 117
MS.gene011449.t1 MTR_2g090270 30.712 267 154 10 10 263 10 258 4.84e-32 119
MS.gene011449.t1 MTR_0122s0020 31.047 277 158 11 6 264 4 265 1.86e-31 117
MS.gene011449.t1 MTR_2g090265 31.557 244 138 10 33 263 29 256 1.37e-29 112
MS.gene011449.t1 MTR_4g028640 33.750 240 130 9 38 264 42 265 9.23e-27 105
MS.gene011449.t1 MTR_6g012500 45.361 97 52 1 162 258 181 276 8.20e-22 92.0
MS.gene011449.t1 MTR_0809s0010 29.150 247 141 9 33 263 42 270 1.06e-21 91.7
MS.gene011449.t1 MTR_0118s0070 29.237 236 139 8 43 263 53 275 2.47e-21 90.9
MS.gene011449.t1 MTR_5g013440 25.292 257 170 8 16 264 10 252 5.70e-21 89.4
MS.gene011449.t1 MTR_0122s0020 30.698 215 118 9 6 203 4 204 8.60e-21 87.8
MS.gene011449.t1 MTR_4g099370 28.302 265 152 10 16 264 9 251 2.34e-19 85.1
MS.gene011449.t1 MTR_4g075790 28.194 227 132 7 51 263 34 243 3.21e-16 76.6
MS.gene011449.t1 MTR_4g098930 26.592 267 157 10 10 261 8 250 8.88e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011449.t1 AT1G12560 64.394 264 92 2 1 264 1 262 1.69e-123 352
MS.gene011449.t1 AT1G62980 64.777 247 87 0 18 264 11 257 1.25e-119 342
MS.gene011449.t1 AT3G55500 54.618 249 110 3 11 257 6 253 2.67e-94 278
MS.gene011449.t1 AT2G39700 53.226 248 113 3 11 257 5 250 5.54e-93 275
MS.gene011449.t1 AT2G37640 52.033 246 116 2 14 258 12 256 4.41e-89 265
MS.gene011449.t1 AT5G02260 50.201 249 122 2 11 258 5 252 4.65e-89 265
MS.gene011449.t1 AT2G28950 49.799 249 122 3 11 257 3 250 5.97e-88 262
MS.gene011449.t1 AT4G01630 54.701 234 92 4 38 263 28 255 1.12e-87 261
MS.gene011449.t1 AT1G69530 51.200 250 115 5 11 258 1 245 5.88e-85 254
MS.gene011449.t1 AT1G69530 51.200 250 115 5 11 258 1 245 5.88e-85 254
MS.gene011449.t1 AT1G69530 50.794 252 117 5 11 260 1 247 7.69e-85 254
MS.gene011449.t1 AT5G56320 52.016 248 111 5 12 258 7 247 1.08e-84 254
MS.gene011449.t1 AT5G56320 52.016 248 111 5 12 258 7 247 1.08e-84 254
MS.gene011449.t1 AT2G03090 55.605 223 97 2 36 258 28 248 1.57e-84 253
MS.gene011449.t1 AT5G56320 52.016 248 111 5 12 258 7 247 7.33e-84 253
MS.gene011449.t1 AT2G40610 51.037 241 113 4 19 257 11 248 8.55e-82 246
MS.gene011449.t1 AT1G20190 50.000 238 116 2 28 263 16 252 2.61e-79 240
MS.gene011449.t1 AT2G37640 54.634 205 91 2 55 258 28 231 1.53e-78 237
MS.gene011449.t1 AT5G05290 51.339 224 102 5 38 258 32 251 5.93e-78 236
MS.gene011449.t1 AT5G39300 45.455 275 129 7 4 263 8 276 1.44e-77 236
MS.gene011449.t1 AT5G39280 48.207 251 118 6 19 263 31 275 9.24e-77 234
MS.gene011449.t1 AT1G26770 49.213 254 115 5 7 258 3 244 2.07e-76 232
MS.gene011449.t1 AT1G26770 49.213 254 115 5 7 258 13 254 3.08e-76 232
MS.gene011449.t1 AT1G69530 50.000 236 108 6 11 244 1 228 4.80e-76 231
MS.gene011449.t1 AT5G39270 50.000 230 107 5 36 263 56 279 5.36e-76 232
MS.gene011449.t1 AT5G39290 50.218 229 106 5 37 263 57 279 7.77e-75 229
MS.gene011449.t1 AT3G29030 45.703 256 121 3 12 258 3 249 1.39e-74 228
MS.gene011449.t1 AT1G69530 52.036 221 98 5 11 229 1 215 1.40e-74 226
MS.gene011449.t1 AT5G39310 45.607 239 117 7 30 263 82 312 1.15e-67 212
MS.gene011449.t1 AT3G15370 44.578 249 126 6 17 260 6 247 3.15e-63 199
MS.gene011449.t1 AT3G03220 44.889 225 117 4 37 258 39 259 3.75e-63 199
MS.gene011449.t1 AT4G38210 42.060 233 130 4 35 264 25 255 5.62e-61 193
MS.gene011449.t1 AT1G20190 48.187 193 97 2 73 263 2 193 2.82e-60 189
MS.gene011449.t1 AT3G15370 39.785 279 126 7 17 260 6 277 8.28e-57 183
MS.gene011449.t1 AT5G39260 42.241 232 118 6 36 263 43 262 3.01e-54 176
MS.gene011449.t1 AT4G28250 32.593 270 150 10 10 263 7 260 2.67e-35 127
MS.gene011449.t1 AT4G28250 31.955 266 151 9 10 263 7 254 6.73e-34 123
MS.gene011449.t1 AT1G65680 32.800 250 141 8 28 263 37 273 5.82e-33 121
MS.gene011449.t1 AT2G20750 31.818 242 139 8 36 263 38 267 4.40e-32 119
MS.gene011449.t1 AT2G45110 30.576 278 159 11 1 263 1 259 2.05e-27 106
MS.gene011449.t1 AT1G65681 31.556 225 129 7 52 264 12 223 6.93e-25 99.4
MS.gene011449.t1 AT4G28250 30.392 204 115 7 10 203 7 193 5.43e-21 88.6
MS.gene011449.t1 AT4G28250 30.846 201 112 7 10 200 7 190 6.74e-21 88.2
MS.gene011449.t1 AT2G20750 30.319 188 107 7 36 211 38 213 9.45e-20 85.5
MS.gene011449.t1 AT4G17030 26.087 253 168 7 17 261 6 247 3.01e-19 84.7
MS.gene011449.t1 AT3G60570 26.217 267 166 8 10 263 9 257 4.98e-19 84.3
MS.gene011449.t1 AT3G60570 26.244 221 135 7 56 263 4 209 4.10e-14 70.1
MS.gene011449.t1 AT3G45970 25.806 217 141 6 57 263 15 221 2.16e-12 65.5

Find 80 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCAACATTGTTCAATAA+TGG 0.212841 8.2:-21196408 MS.gene011449:CDS
CCAAGCTATTATAGTTTCTT+TGG 0.229810 8.2:+21195209 None:intergenic
TTATCAATATTGTAGCTTCT+TGG 0.253481 8.2:-21197027 MS.gene011449:CDS
AGGAAATGGGTATTGGTTAT+TGG 0.261742 8.2:-21195394 MS.gene011449:CDS
CAAATATTTGCCCTCCTAAT+TGG 0.264760 8.2:-21196299 MS.gene011449:CDS
CGATTCTCTTTCCAAGGAAA+TGG 0.277433 8.2:-21195408 MS.gene011449:CDS
GGAATGTTGCTCCTTCCAAC+TGG 0.286104 8.2:-21195188 MS.gene011449:CDS
GCTCCTTCCAACTGGGCTGC+TGG 0.323833 8.2:-21195180 MS.gene011449:CDS
ATAGCAAACATGTGGGTTAA+AGG 0.332124 8.2:-21195339 MS.gene011449:CDS
GTTCAACATTGTTCAATAAT+GGG 0.335116 8.2:-21196407 MS.gene011449:CDS
AATTTGTTTCTGAATGGTTA+TGG 0.357643 8.2:-21196450 MS.gene011449:CDS
AATTACCTGCGATACATAAC+AGG 0.358374 8.2:+21196171 None:intergenic
TAATCTTGAAAGAAAGAGTT+TGG 0.362500 8.2:+21195244 None:intergenic
GCACATTTCAACCCAGTTCA+TGG 0.362883 8.2:-21196947 MS.gene011449:CDS
CTTTCCAAGGAAATGGGTAT+TGG 0.363273 8.2:-21195401 MS.gene011449:CDS
ATTTGTTTCTGAATGGTTAT+GGG 0.373242 8.2:-21196449 MS.gene011449:CDS
AAAATTGACATGTGTGGAAT+AGG 0.412567 8.2:+21195152 None:intergenic
GGATTAGCATGAGCCACAAT+TGG 0.416127 8.2:-21195302 MS.gene011449:CDS
TCGGATGCCTGAGACCAATT+AGG 0.422103 8.2:+21196285 None:intergenic
TGGTCTCAGGCATCCGATTA+CGG 0.441938 8.2:-21196279 MS.gene011449:CDS
ATAACCAATACCCATTTCCT+TGG 0.444503 8.2:+21195397 None:intergenic
GATTAGCATGAGCCACAATT+GGG 0.448115 8.2:-21195301 MS.gene011449:CDS
TGGGTTAAAGGAAGTAGAAC+AGG 0.452727 8.2:-21195327 MS.gene011449:CDS
GATTCTCTTTCCAAGGAAAT+GGG 0.454324 8.2:-21195407 MS.gene011449:CDS
TTGCCCTCCTAATTGGTCTC+AGG 0.458583 8.2:-21196292 MS.gene011449:CDS
GTTGCACCATCCACCGTAAT+CGG 0.465140 8.2:+21196266 None:intergenic
TACCAAGCATTTGCAACACT+TGG 0.476281 8.2:-21195270 MS.gene011449:CDS
TATGGAAATTTGTTTCTGAA+TGG 0.491875 8.2:-21196456 MS.gene011449:CDS
CAAGCATTTGCAACACTTGG+TGG 0.494165 8.2:-21195267 MS.gene011449:CDS
AAAGGAGGAGCATGTGGGTA+TGG 0.494882 8.2:-21196474 MS.gene011449:intron
ATTAGGAGGGCAAATATTTG+TGG 0.499330 8.2:+21196302 None:intergenic
GCAAAGCCAGCTTTAGTAGC+GGG 0.501290 8.2:-21196969 MS.gene011449:CDS
GAATGTTGCTCCTTCCAACT+GGG 0.505072 8.2:-21195187 MS.gene011449:CDS
ATGTGCAAGAGTCCATGAAC+TGG 0.507085 8.2:+21196935 None:intergenic
AATGTGCCCGCTACTAAAGC+TGG 0.511601 8.2:+21196963 None:intergenic
GTGATGAATGTGGGAGGTGG+AGG 0.515112 8.2:-21195366 MS.gene011449:CDS
TGTTGCAAATGCTTGGTAAG+AGG 0.517179 8.2:+21195275 None:intergenic
TACGTGATGAATGTGGGAGG+TGG 0.521955 8.2:-21195369 MS.gene011449:CDS
TGCAAAGCCAGCTTTAGTAG+CGG 0.523369 8.2:-21196970 MS.gene011449:CDS
CTTATTAAAGGAGGAGCATG+TGG 0.525297 8.2:-21196480 MS.gene011449:intron
GGATTTCGATTCTCTTTCCA+AGG 0.530783 8.2:-21195414 MS.gene011449:CDS
CCAAAGAAACTATAATAGCT+TGG 0.533024 8.2:-21195209 MS.gene011449:CDS
CACCAAGTGTTGCAAATGCT+TGG 0.541324 8.2:+21195268 None:intergenic
AAAATTGCACAGTGGAAGGC+CGG 0.541507 8.2:-21196201 MS.gene011449:CDS
GGTTAATCCAGCAGCCCAGT+TGG 0.542121 8.2:+21195173 None:intergenic
ATACATAACAGGGACGATAC+CGG 0.542921 8.2:+21196182 None:intergenic
CATGAAAATTGCACAGTGGA+AGG 0.550705 8.2:-21196205 MS.gene011449:CDS
GGTAAGAGGCACCCCAATTG+TGG 0.551899 8.2:+21195289 None:intergenic
ATTGGTGTACGTGATGAATG+TGG 0.559419 8.2:-21195376 MS.gene011449:CDS
TTCAATAATGGGTATGCATG+TGG 0.563755 8.2:-21196396 MS.gene011449:CDS
AATCCAGCAGCCCAGTTGGA+AGG 0.563994 8.2:+21195177 None:intergenic
AGGCATCCGATTACGGTGGA+TGG 0.564250 8.2:-21196272 MS.gene011449:CDS
TCGTCCCTGTTATGTATCGC+AGG 0.570292 8.2:-21196176 MS.gene011449:intron
TTGGTGTACGTGATGAATGT+GGG 0.577309 8.2:-21195375 MS.gene011449:CDS
TTCTTAGAGTGCCTTGCATG+AGG 0.577880 8.2:-21195443 MS.gene011449:intron
GATGCCTGAGACCAATTAGG+AGG 0.590186 8.2:+21196288 None:intergenic
GTGCCTTGCATGAGGAGTGA+AGG 0.590760 8.2:-21195435 MS.gene011449:CDS
GAGACAGCTTCTGCCACCAT+GGG 0.594645 8.2:-21196894 MS.gene011449:intron
GACTGTAGTGTAAGGAACAT+TGG 0.607957 8.2:+21196329 None:intergenic
TGAGACAGCTTCTGCCACCA+TGG 0.614492 8.2:-21196895 MS.gene011449:CDS
GAGGTGATATAGCAAACATG+TGG 0.614514 8.2:-21195347 MS.gene011449:CDS
TTAAAGGAAGTAGAACAGGA+TGG 0.614528 8.2:-21195323 MS.gene011449:CDS
AATCCTTCACTCCTCATGCA+AGG 0.617867 8.2:+21195432 None:intergenic
TCAATAATGGGTATGCATGT+GGG 0.626106 8.2:-21196395 MS.gene011449:CDS
TGTCTCATCGCCATAAAATG+TGG 0.626462 8.2:+21196911 None:intergenic
GTGGCAGTGACTGTAGTGTA+AGG 0.632028 8.2:+21196321 None:intergenic
ATGCCTGAGACCAATTAGGA+GGG 0.649082 8.2:+21196289 None:intergenic
TTATTAAAGGAGGAGCATGT+GGG 0.672893 8.2:-21196479 MS.gene011449:intron
TGTGCAAGAGTCCATGAACT+GGG 0.678559 8.2:+21196936 None:intergenic
AGGTGATATAGCAAACATGT+GGG 0.681494 8.2:-21195346 MS.gene011449:CDS
ATTAGCATGAGCCACAATTG+GGG 0.689678 8.2:-21195300 MS.gene011449:CDS
TCAATGAAAATTGACATGTG+TGG 0.690286 8.2:+21195146 None:intergenic
GTGTACGTGATGAATGTGGG+AGG 0.693958 8.2:-21195372 MS.gene011449:CDS
TCTCAGGCATCCGATTACGG+TGG 0.700337 8.2:-21196276 MS.gene011449:CDS
GAGATATAACTTACCCATGG+TGG 0.711843 8.2:+21196881 None:intergenic
TGTCAAAATGTGAACGTGGT+GGG 0.713445 8.2:+21196244 None:intergenic
ATGTCAAAATGTGAACGTGG+TGG 0.718706 8.2:+21196243 None:intergenic
ATTACCTGCGATACATAACA+GGG 0.735393 8.2:+21196172 None:intergenic
CCTTCATGAAAATTGCACAG+TGG 0.762866 8.2:-21196209 MS.gene011449:CDS
GACATGTCAAAATGTGAACG+TGG 0.763719 8.2:+21196240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAATTAAATAGTTTG+TGG - chr8.2:21195659-21195678 MS.gene011449:intron 10.0%
!! TATTCTATATTATATATATG+TGG + chr8.2:21196056-21196075 None:intergenic 10.0%
!! TTAATTATTTATATCTAGAA+GGG + chr8.2:21195651-21195670 None:intergenic 10.0%
!! TTTAATTATTTATATCTAGA+AGG + chr8.2:21195652-21195671 None:intergenic 10.0%
!! AGAATAGATTAATAACAAAA+TGG - chr8.2:21196070-21196089 MS.gene011449:intron 15.0%
!! ATATAGTGTTATACCAAAAA+AGG + chr8.2:21195405-21195424 None:intergenic 20.0%
!! ATGTAGTTATGTGATATAAA+CGG - chr8.2:21196441-21196460 MS.gene011449:CDS 20.0%
!! GGTAACTAATTAAAATTTGA+TGG - chr8.2:21195680-21195699 MS.gene011449:intron 20.0%
!! TTATGAGACATTAGAAAATA+TGG + chr8.2:21196100-21196119 None:intergenic 20.0%
!!! AAAGATCAAATAACTACTTT+TGG + chr8.2:21196341-21196360 None:intergenic 20.0%
!!! AAATTTGATGGACTTATTAA+AGG - chr8.2:21195692-21195711 MS.gene011449:intron 20.0%
!!! ATATCTCTTTTGTAATGTTA+AGG + chr8.2:21196663-21196682 None:intergenic 20.0%
!!! GATTTACCAAATTTAAAATG+TGG + chr8.2:21196181-21196200 None:intergenic 20.0%
!!! GATTTATCAAATTTGAAACA+TGG + chr8.2:21196314-21196333 None:intergenic 20.0%
!!! TAATTTAGTGAGATTGATTT+TGG + chr8.2:21195381-21195400 None:intergenic 20.0%
! AACACATTATGCATGAAAAA+AGG + chr8.2:21196608-21196627 None:intergenic 25.0%
! AGTTCAACATTGTTCAATAA+TGG - chr8.2:21195776-21195795 MS.gene011449:intron 25.0%
! GGGAAAATTAGTATTAATTG+TGG + chr8.2:21195631-21195650 None:intergenic 25.0%
! GTTCAACATTGTTCAATAAT+GGG - chr8.2:21195777-21195796 MS.gene011449:intron 25.0%
! TAATCTTGAAAGAAAGAGTT+TGG + chr8.2:21196943-21196962 None:intergenic 25.0%
! TTACAAAAGAGATATGTCTT+TGG - chr8.2:21196668-21196687 MS.gene011449:intron 25.0%
! TTATCAATATTGTAGCTTCT+TGG - chr8.2:21195157-21195176 MS.gene011449:CDS 25.0%
! TTTCAGTTAGGATTCAAATT+CGG + chr8.2:21195489-21195508 None:intergenic 25.0%
!! ATAAGAGTCCATATTTTCTA+TGG - chr8.2:21196401-21196420 MS.gene011449:CDS 25.0%
!!! AATGTCTGATTTTGATATGA+TGG + chr8.2:21196291-21196310 None:intergenic 25.0%
!!! AATTTGTTTCTGAATGGTTA+TGG - chr8.2:21195734-21195753 MS.gene011449:intron 25.0%
!!! ATTTGTTTCTGAATGGTTAT+GGG - chr8.2:21195735-21195754 MS.gene011449:intron 25.0%
!!! CTCACTAAATTAACCTTTTT+TGG - chr8.2:21195389-21195408 MS.gene011449:CDS 25.0%
!!! TATGGAAATTTGTTTCTGAA+TGG - chr8.2:21195728-21195747 MS.gene011449:intron 25.0%
AAAATTGACATGTGTGGAAT+AGG + chr8.2:21197035-21197054 None:intergenic 30.0%
ATCTGATCTTGATACAATCT+AGG - chr8.2:21196538-21196557 MS.gene011449:intron 30.0%
ATTGAGATATAACTTACCCA+TGG + chr8.2:21195309-21195328 None:intergenic 30.0%
CAAAGTTTGACCAACATTAT+TGG - chr8.2:21195544-21195563 MS.gene011449:intron 30.0%
CAATCATGGAAATGTCAATT+TGG + chr8.2:21196374-21196393 None:intergenic 30.0%
CATTGTGACCATAGAAAATA+TGG + chr8.2:21196412-21196431 None:intergenic 30.0%
CCAAAGAAACTATAATAGCT+TGG - chr8.2:21196975-21196994 MS.gene011449:CDS 30.0%
CCAAGCTATTATAGTTTCTT+TGG + chr8.2:21196978-21196997 None:intergenic 30.0%
GCATGAAAAAAGGTTGAATT+TGG + chr8.2:21196598-21196617 None:intergenic 30.0%
GGTCAAACATTATTTCAGTT+AGG + chr8.2:21195501-21195520 None:intergenic 30.0%
TAAACGGTTAAATCAAAGAG+AGG - chr8.2:21196457-21196476 MS.gene011449:CDS 30.0%
TCAATGAAAATTGACATGTG+TGG + chr8.2:21197041-21197060 None:intergenic 30.0%
TTGTACATCAATTGCTGAAA+TGG + chr8.2:21195357-21195376 None:intergenic 30.0%
! GTTGCATCATTTGTCTTTTA+AGG - chr8.2:21196625-21196644 MS.gene011449:intron 30.0%
!! TTTGATGGACTTATTAAAGG+AGG - chr8.2:21195695-21195714 MS.gene011449:intron 30.0%
AATTACCTGCGATACATAAC+AGG + chr8.2:21196016-21196035 None:intergenic 35.0%
AGGTGATATAGCAAACATGT+GGG - chr8.2:21196838-21196857 MS.gene011449:intron 35.0%
ATAACCAATACCCATTTCCT+TGG + chr8.2:21196790-21196809 None:intergenic 35.0%
ATGATAGTTCGTCAATCGTT+TGG + chr8.2:21195442-21195461 None:intergenic 35.0%
ATTACCTGCGATACATAACA+GGG + chr8.2:21196015-21196034 None:intergenic 35.0%
ATTAGGAGGGCAAATATTTG+TGG + chr8.2:21195885-21195904 None:intergenic 35.0%
CAAATATTTGCCCTCCTAAT+TGG - chr8.2:21195885-21195904 MS.gene011449:intron 35.0%
CTTGATTCAACATGATTGTG+TGG - chr8.2:21196235-21196254 MS.gene011449:CDS 35.0%
GATTCTCTTTCCAAGGAAAT+GGG - chr8.2:21196777-21196796 MS.gene011449:intron 35.0%
GCTATCGGATTAAAATCAGA+CGG - chr8.2:21196154-21196173 MS.gene011449:intron 35.0%
TTAAAGGAAGTAGAACAGGA+TGG - chr8.2:21196861-21196880 MS.gene011449:intron 35.0%
! ATAGCAAACATGTGGGTTAA+AGG - chr8.2:21196845-21196864 MS.gene011449:intron 35.0%
! GACGGTCCACATTTTAAATT+TGG - chr8.2:21196172-21196191 MS.gene011449:intron 35.0%
! GATACAATCTAGGTTGACAA+CGG - chr8.2:21196548-21196567 MS.gene011449:intron 35.0%
! TTATTAAAGGAGGAGCATGT+GGG - chr8.2:21195705-21195724 MS.gene011449:intron 35.0%
! TTTTGTCACGTGATCTATCT+AGG - chr8.2:21196132-21196151 MS.gene011449:intron 35.0%
!! AGGAAATGGGTATTGGTTAT+TGG - chr8.2:21196790-21196809 MS.gene011449:intron 35.0%
!! TCAATAATGGGTATGCATGT+GGG - chr8.2:21195789-21195808 MS.gene011449:intron 35.0%
!! TTCAATAATGGGTATGCATG+TGG - chr8.2:21195788-21195807 MS.gene011449:intron 35.0%
AACCGCAGTTCCAATAATGT+TGG + chr8.2:21195557-21195576 None:intergenic 40.0%
ACGTGATCTATCTAGGCTAT+CGG - chr8.2:21196139-21196158 MS.gene011449:intron 40.0%
ATACATAACAGGGACGATAC+CGG + chr8.2:21196005-21196024 None:intergenic 40.0%
ATGTCAAAATGTGAACGTGG+TGG + chr8.2:21195944-21195963 None:intergenic 40.0%
ATTAGCATGAGCCACAATTG+GGG - chr8.2:21196884-21196903 MS.gene011449:intron 40.0%
ATTGGTGTACGTGATGAATG+TGG - chr8.2:21196808-21196827 MS.gene011449:intron 40.0%
CATGAAAATTGCACAGTGGA+AGG - chr8.2:21195979-21195998 MS.gene011449:intron 40.0%
CCTTCATGAAAATTGCACAG+TGG - chr8.2:21195975-21195994 MS.gene011449:intron 40.0%
CGATTCTCTTTCCAAGGAAA+TGG - chr8.2:21196776-21196795 MS.gene011449:intron 40.0%
CTTTCCAAGGAAATGGGTAT+TGG - chr8.2:21196783-21196802 MS.gene011449:intron 40.0%
GACATGTCAAAATGTGAACG+TGG + chr8.2:21195947-21195966 None:intergenic 40.0%
GACCAACATTATTGGAACTG+CGG - chr8.2:21195552-21195571 MS.gene011449:intron 40.0%
GACTGTAGTGTAAGGAACAT+TGG + chr8.2:21195858-21195877 None:intergenic 40.0%
GAGATATAACTTACCCATGG+TGG + chr8.2:21195306-21195325 None:intergenic 40.0%
GAGGTGATATAGCAAACATG+TGG - chr8.2:21196837-21196856 MS.gene011449:intron 40.0%
GATTAGCATGAGCCACAATT+GGG - chr8.2:21196883-21196902 MS.gene011449:intron 40.0%
GGATTTCGATTCTCTTTCCA+AGG - chr8.2:21196770-21196789 MS.gene011449:intron 40.0%
GGTAGTTCATGCTTCAACTT+TGG - chr8.2:21196478-21196497 MS.gene011449:intron 40.0%
TACCAAGCATTTGCAACACT+TGG - chr8.2:21196914-21196933 MS.gene011449:CDS 40.0%
TGGGTTAAAGGAAGTAGAAC+AGG - chr8.2:21196857-21196876 MS.gene011449:intron 40.0%
TGTCAAAATGTGAACGTGGT+GGG + chr8.2:21195943-21195962 None:intergenic 40.0%
TGTCTCATCGCCATAAAATG+TGG + chr8.2:21195276-21195295 None:intergenic 40.0%
TGTTGCAAATGCTTGGTAAG+AGG + chr8.2:21196912-21196931 None:intergenic 40.0%
TTGACATTTCCATGATTGCG+TGG - chr8.2:21196376-21196395 MS.gene011449:CDS 40.0%
TTGGTGTACGTGATGAATGT+GGG - chr8.2:21196809-21196828 MS.gene011449:intron 40.0%
! CCACTGTGCAATTTTCATGA+AGG + chr8.2:21195978-21195997 None:intergenic 40.0%
! CTTATTAAAGGAGGAGCATG+TGG - chr8.2:21195704-21195723 MS.gene011449:intron 40.0%
! CTTGCACATGCCACATTTTA+TGG - chr8.2:21195263-21195282 MS.gene011449:CDS 40.0%
! TGTGCAATTTTCATGAAGGC+AGG + chr8.2:21195974-21195993 None:intergenic 40.0%
AAAATTGCACAGTGGAAGGC+CGG - chr8.2:21195983-21196002 MS.gene011449:intron 45.0%
AATCCTTCACTCCTCATGCA+AGG + chr8.2:21196755-21196774 None:intergenic 45.0%
ATGCCTGAGACCAATTAGGA+GGG + chr8.2:21195898-21195917 None:intergenic 45.0%
ATGTGCAAGAGTCCATGAAC+TGG + chr8.2:21195252-21195271 None:intergenic 45.0%
CAAGCATTTGCAACACTTGG+TGG - chr8.2:21196917-21196936 MS.gene011449:CDS 45.0%
CTCTTATGTCCACGCAATCA+TGG + chr8.2:21196388-21196407 None:intergenic 45.0%
GAATGTTGCTCCTTCCAACT+GGG - chr8.2:21196997-21197016 MS.gene011449:CDS 45.0%
GCACATTTCAACCCAGTTCA+TGG - chr8.2:21195237-21195256 MS.gene011449:CDS 45.0%
TGTGCAAGAGTCCATGAACT+GGG + chr8.2:21195251-21195270 None:intergenic 45.0%
! CACCAAGTGTTGCAAATGCT+TGG + chr8.2:21196919-21196938 None:intergenic 45.0%
! GGATTAGCATGAGCCACAAT+TGG - chr8.2:21196882-21196901 MS.gene011449:intron 45.0%
! TGCAAAGCCAGCTTTAGTAG+CGG - chr8.2:21195214-21195233 MS.gene011449:CDS 45.0%
! TTCTTAGAGTGCCTTGCATG+AGG - chr8.2:21196741-21196760 MS.gene011449:intron 45.0%
!! AAAAAAAAATAAAATAATGT+TGG + chr8.2:21195522-21195541 None:intergenic 5.0%
AATGTGCCCGCTACTAAAGC+TGG + chr8.2:21195224-21195243 None:intergenic 50.0%
GATGCCTGAGACCAATTAGG+AGG + chr8.2:21195899-21195918 None:intergenic 50.0%
GGAATGTTGCTCCTTCCAAC+TGG - chr8.2:21196996-21197015 MS.gene011449:CDS 50.0%
GTGGCAGTGACTGTAGTGTA+AGG + chr8.2:21195866-21195885 None:intergenic 50.0%
GTGTACGTGATGAATGTGGG+AGG - chr8.2:21196812-21196831 MS.gene011449:intron 50.0%
GTTGCACCATCCACCGTAAT+CGG + chr8.2:21195921-21195940 None:intergenic 50.0%
TACGTGATGAATGTGGGAGG+TGG - chr8.2:21196815-21196834 MS.gene011449:intron 50.0%
TCGGATGCCTGAGACCAATT+AGG + chr8.2:21195902-21195921 None:intergenic 50.0%
TCGTCCCTGTTATGTATCGC+AGG - chr8.2:21196008-21196027 MS.gene011449:intron 50.0%
TGGTCTCAGGCATCCGATTA+CGG - chr8.2:21195905-21195924 MS.gene011449:intron 50.0%
! AAAGGAGGAGCATGTGGGTA+TGG - chr8.2:21195710-21195729 MS.gene011449:intron 50.0%
! GCAAAGCCAGCTTTAGTAGC+GGG - chr8.2:21195215-21195234 MS.gene011449:CDS 50.0%
! TTGCCCTCCTAATTGGTCTC+AGG - chr8.2:21195892-21195911 MS.gene011449:intron 50.0%
AATCCAGCAGCCCAGTTGGA+AGG + chr8.2:21197010-21197029 None:intergenic 55.0%
AGGCATCCGATTACGGTGGA+TGG - chr8.2:21195912-21195931 MS.gene011449:intron 55.0%
GAGACAGCTTCTGCCACCAT+GGG - chr8.2:21195290-21195309 MS.gene011449:CDS 55.0%
GGTTAATCCAGCAGCCCAGT+TGG + chr8.2:21197014-21197033 None:intergenic 55.0%
GTGATGAATGTGGGAGGTGG+AGG - chr8.2:21196818-21196837 MS.gene011449:intron 55.0%
GTGCCTTGCATGAGGAGTGA+AGG - chr8.2:21196749-21196768 MS.gene011449:intron 55.0%
TCTCAGGCATCCGATTACGG+TGG - chr8.2:21195908-21195927 MS.gene011449:intron 55.0%
TGAGACAGCTTCTGCCACCA+TGG - chr8.2:21195289-21195308 MS.gene011449:CDS 55.0%
!! GGTAAGAGGCACCCCAATTG+TGG + chr8.2:21196898-21196917 None:intergenic 55.0%
GCTCCTTCCAACTGGGCTGC+TGG - chr8.2:21197004-21197023 MS.gene011449:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 21195146 21197060 21195146 ID=MS.gene011449
chr8.2 mRNA 21195146 21197060 21195146 ID=MS.gene011449.t1;Parent=MS.gene011449
chr8.2 exon 21196895 21197060 21196895 ID=MS.gene011449.t1.exon1;Parent=MS.gene011449.t1
chr8.2 CDS 21196895 21197060 21196895 ID=cds.MS.gene011449.t1;Parent=MS.gene011449.t1
chr8.2 exon 21196177 21196492 21196177 ID=MS.gene011449.t1.exon2;Parent=MS.gene011449.t1
chr8.2 CDS 21196177 21196492 21196177 ID=cds.MS.gene011449.t1;Parent=MS.gene011449.t1
chr8.2 exon 21195146 21195458 21195146 ID=MS.gene011449.t1.exon3;Parent=MS.gene011449.t1
chr8.2 CDS 21195146 21195458 21195146 ID=cds.MS.gene011449.t1;Parent=MS.gene011449.t1
Gene Sequence

>MS.gene011449

ATGGCTGCAATTTATCAATATTGTAGCTTCTTGGTTACAATTACAATTACACTGATGCTCACAATCATTGCAAAGCCAGCTTTAGTAGCGGGCACATTTCAACCCAGTTCATGGACTCTTGCACATGCCACATTTTATGGCGATGAGACAGCTTCTGCCACCATGGGTAAGTTATATCTCAATCTCTTAATTATTATCATTAGCTAAACCATTTCAGCAATTGATGTACAAGCCAAAATCAATCTCACTAAATTAACCTTTTTTGGTATAACACTATATTAACATTTTACTGACCAAACGATTGACGAACTATCATTTAAAACAAATTATTCAGAAGAATCCGAATTTGAATCCTAACTGAAATAATGTTTGACCAACATTATTTTATTTTTTTTTGACAAAGTTTGACCAACATTATTGGAACTGCGGTTAAGACAAACATTTAACATCTTACTTAAATAGTTTGTAAATCATTAGCATTACCACAATTAATACTAATTTTCCCTTCTAGATATAAATAATTAAATAGTTTGTGGTAACTAATTAAAATTTGATGGACTTATTAAAGGAGGAGCATGTGGGTATGGAAATTTGTTTCTGAATGGTTATGGGACAGACACAGCAGCATTGAGTTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGTGTTCAATCAAGTGCATGTAACACCAATGTTCCTTACACTACAGTCACTGCCACAAATATTTGCCCTCCTAATTGGTCTCAGGCATCCGATTACGGTGGATGGTGCAACCCACCACGTTCACATTTTGACATGTCTAAGCCTGCCTTCATGAAAATTGCACAGTGGAAGGCCGGTATCGTCCCTGTTATGTATCGCAGGTAATTAACAAATCAAGCTTGCTCCACATATATATAATATAGAATAGATTAATAACAAAATGGTCGTCCATATTTTCTAATGTCTCATAAACATGCATATGATTTTGTCACGTGATCTATCTAGGCTATCGGATTAAAATCAGACGGTCCACATTTTAAATTTGGTAAATCAAATTTAAAGTACAAAGTGAAAATGTGATCTAATCTTGATTCAACATGATTGTGTGGATACATATATTTACAGTCACATGATTTTGACCATCATATCAAAATCAGACATTCCATGTTTCAAATTTGATAAATCGAGTCCAAAAGTAGTTATTTGATCTTTATCTCGTAATCCAAATTGACATTTCCATGATTGCGTGGACATAAGAGTCCATATTTTCTATGGTCACAATGACACAATTGATGTAGTTATGTGATATAAACGGTTAAATCAAAGAGAGGTAGTTCATGCTTCAACTTTGGTAAATTGCGTCTAAAATGCAAAGTTGAAATATCAATAATCTGATCTTGATACAATCTAGGTTGACAACGGCACGATTGTGTGATCACAAAGAATCCAAATTCAACCTTTTTTCATGCATAATGTGTTGCATCATTTGTCTTTTAAGGAGATTATTCTTACCTTAACATTACAAAAGAGATATGTCTTTGGCTTTAGTGATATCGTACTTACAATGTGATTTGTTGATAAAAAAATTGAATTTCTTAGAGTGCCTTGCATGAGGAGTGAAGGATTTCGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTGTACGTGATGAATGTGGGAGGTGGAGGTGATATAGCAAACATGTGGGTTAAAGGAAGTAGAACAGGATGGATTAGCATGAGCCACAATTGGGGTGCCTCTTACCAAGCATTTGCAACACTTGGTGGCCAAACTCTTTCTTTCAAGATTACTTCTTACACAACCAAAGAAACTATAATAGCTTGGAATGTTGCTCCTTCCAACTGGGCTGCTGGATTAACCTATTCCACACATGTCAATTTTCATTGA
Protein sequence

>MS.gene011449.t1

MAAIYQYCSFLVTITITLMLTIIAKPALVAGTFQPSSWTLAHATFYGDETASATMGGACGYGNLFLNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACNTNVPYTTVTATNICPPNWSQASDYGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVPCMRSEGFRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLGGQTLSFKITSYTTKETIIAWNVAPSNWAAGLTYSTHVNFH