Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46499.t1 | KEH41788.1 | 93.2 | 177 | 12 | 0 | 21 | 197 | 1 | 177 | 1.80E-87 | 332 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46499.t1 | Q8L4N1 | 28.7 | 181 | 103 | 5 | 22 | 192 | 44 | 208 | 1.7e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46499.t1 | A0A072VK27 | 93.2 | 177 | 12 | 0 | 21 | 197 | 1 | 177 | 1.3e-87 | 332.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052224 | MS.gene46499 | -0.853192 | 2.81E-61 | -1.69E-46 |
| MS.gene053401 | MS.gene46499 | 0.869607 | 2.73E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063633 | MS.gene46499 | PPI |
| MS.gene26154 | MS.gene46499 | PPI |
| MS.gene010109 | MS.gene46499 | PPI |
| MS.gene009525 | MS.gene46499 | PPI |
| MS.gene017358 | MS.gene46499 | PPI |
| MS.gene050004 | MS.gene46499 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46499.t1 | MTR_1g054765 | 93.220 | 177 | 12 | 0 | 21 | 197 | 1 | 177 | 1.69e-124 | 348 |
| MS.gene46499.t1 | MTR_1g054750 | 79.188 | 197 | 34 | 5 | 1 | 197 | 1 | 190 | 3.45e-107 | 305 |
| MS.gene46499.t1 | MTR_1g083950 | 37.989 | 179 | 88 | 4 | 13 | 191 | 3 | 158 | 5.23e-33 | 116 |
| MS.gene46499.t1 | MTR_1g088640 | 38.251 | 183 | 92 | 4 | 13 | 194 | 2 | 164 | 7.03e-33 | 116 |
| MS.gene46499.t1 | MTR_1g088640 | 37.634 | 186 | 92 | 5 | 13 | 194 | 2 | 167 | 2.27e-32 | 114 |
| MS.gene46499.t1 | MTR_5g065980 | 36.686 | 169 | 92 | 6 | 25 | 188 | 10 | 168 | 3.77e-30 | 109 |
| MS.gene46499.t1 | MTR_1g087200 | 36.158 | 177 | 90 | 5 | 17 | 190 | 2 | 158 | 6.00e-30 | 108 |
| MS.gene46499.t1 | MTR_5g065980 | 36.842 | 171 | 91 | 7 | 25 | 188 | 10 | 170 | 7.23e-29 | 106 |
| MS.gene46499.t1 | MTR_7g108830 | 36.207 | 174 | 92 | 5 | 22 | 194 | 7 | 162 | 1.35e-22 | 89.7 |
| MS.gene46499.t1 | MTR_8g058620 | 36.207 | 174 | 92 | 5 | 22 | 194 | 7 | 162 | 1.35e-22 | 89.7 |
| MS.gene46499.t1 | MTR_4g064933 | 31.928 | 166 | 98 | 2 | 24 | 188 | 6 | 157 | 1.76e-18 | 79.0 |
| MS.gene46499.t1 | MTR_2g089350 | 30.601 | 183 | 94 | 6 | 24 | 194 | 26 | 187 | 3.92e-18 | 79.3 |
| MS.gene46499.t1 | MTR_2g034200 | 30.286 | 175 | 101 | 4 | 24 | 194 | 6 | 163 | 1.16e-17 | 76.6 |
| MS.gene46499.t1 | MTR_1g088620 | 51.613 | 62 | 30 | 0 | 133 | 194 | 225 | 286 | 4.17e-17 | 77.8 |
| MS.gene46499.t1 | MTR_5g065980 | 32.215 | 149 | 86 | 6 | 25 | 168 | 10 | 148 | 8.18e-17 | 75.5 |
| MS.gene46499.t1 | MTR_5g077130 | 33.871 | 186 | 84 | 8 | 25 | 197 | 7 | 166 | 1.60e-15 | 71.2 |
| MS.gene46499.t1 | MTR_6g006190 | 32.990 | 97 | 62 | 1 | 95 | 188 | 66 | 162 | 2.71e-15 | 70.9 |
| MS.gene46499.t1 | MTR_6g006190 | 32.990 | 97 | 62 | 1 | 95 | 188 | 42 | 138 | 3.11e-15 | 70.1 |
| MS.gene46499.t1 | MTR_5g077130 | 34.409 | 186 | 84 | 8 | 25 | 197 | 7 | 167 | 4.05e-15 | 70.1 |
| MS.gene46499.t1 | MTR_4g019800 | 28.916 | 166 | 97 | 3 | 27 | 188 | 9 | 157 | 1.28e-14 | 68.6 |
| MS.gene46499.t1 | MTR_7g065770 | 29.070 | 172 | 95 | 6 | 24 | 188 | 6 | 157 | 1.18e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46499.t1 | AT3G11930 | 56.395 | 172 | 69 | 3 | 24 | 195 | 34 | 199 | 1.52e-67 | 205 |
| MS.gene46499.t1 | AT3G11930 | 56.647 | 173 | 68 | 4 | 24 | 195 | 34 | 200 | 1.52e-66 | 203 |
| MS.gene46499.t1 | AT3G11930 | 56.322 | 174 | 68 | 4 | 24 | 195 | 34 | 201 | 3.42e-66 | 202 |
| MS.gene46499.t1 | AT3G11930 | 49.246 | 199 | 68 | 5 | 24 | 195 | 34 | 226 | 1.63e-60 | 188 |
| MS.gene46499.t1 | AT3G58450 | 52.381 | 168 | 73 | 3 | 25 | 192 | 32 | 192 | 5.98e-55 | 174 |
| MS.gene46499.t1 | AT3G58450 | 50.595 | 168 | 69 | 3 | 25 | 192 | 32 | 185 | 1.18e-52 | 167 |
| MS.gene46499.t1 | AT1G09740 | 37.572 | 173 | 89 | 4 | 25 | 192 | 10 | 168 | 1.69e-32 | 115 |
| MS.gene46499.t1 | AT1G09740 | 37.572 | 173 | 89 | 4 | 25 | 192 | 10 | 168 | 1.69e-32 | 115 |
| MS.gene46499.t1 | AT3G62550 | 36.471 | 170 | 82 | 5 | 24 | 188 | 8 | 156 | 3.34e-29 | 106 |
| MS.gene46499.t1 | AT2G47710 | 33.918 | 171 | 94 | 4 | 22 | 191 | 7 | 159 | 4.65e-27 | 101 |
| MS.gene46499.t1 | AT1G68300 | 33.143 | 175 | 97 | 3 | 15 | 188 | 2 | 157 | 3.26e-25 | 96.3 |
| MS.gene46499.t1 | AT3G17020 | 31.579 | 171 | 93 | 5 | 24 | 188 | 8 | 160 | 1.40e-15 | 71.2 |
| MS.gene46499.t1 | AT3G01520 | 30.612 | 98 | 67 | 1 | 91 | 188 | 66 | 162 | 1.43e-15 | 71.6 |
| MS.gene46499.t1 | AT5G14680 | 31.633 | 98 | 66 | 1 | 91 | 188 | 66 | 162 | 2.40e-15 | 70.9 |
| MS.gene46499.t1 | AT3G03270 | 31.176 | 170 | 92 | 4 | 25 | 188 | 7 | 157 | 3.75e-15 | 70.1 |
| MS.gene46499.t1 | AT3G53990 | 28.070 | 171 | 98 | 4 | 27 | 191 | 9 | 160 | 1.15e-13 | 66.2 |
| MS.gene46499.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 1.27e-13 | 67.4 |
| MS.gene46499.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 1.27e-13 | 67.4 |
| MS.gene46499.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 1.27e-13 | 67.4 |
| MS.gene46499.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 1.27e-13 | 67.4 |
Find 53 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTATGGCTACTGTTACTA+TGG | 0.183037 | 1.1:-42251717 | MS.gene46499:CDS |
| GCAGAAAGTGTGATTCTTAA+TGG | 0.228368 | 1.1:-42249414 | MS.gene46499:CDS |
| TATGCATAAGTGTGGAAATT+TGG | 0.264690 | 1.1:+42251641 | None:intergenic |
| CCAGCTGGTCCCATAGGTAT+AGG | 0.340250 | 1.1:+42251617 | None:intergenic |
| AAAAGGGTGATGGAGGAAAT+AGG | 0.378001 | 1.1:-42251869 | None:intergenic |
| TGATAACCTCTTCAACGTTA+TGG | 0.381044 | 1.1:-42251732 | MS.gene46499:CDS |
| TCCCCAACTGCAGGTGTTGA+TGG | 0.386834 | 1.1:+42251245 | None:intergenic |
| ATCCATCAACACCTGCAGTT+GGG | 0.399507 | 1.1:-42251247 | MS.gene46499:CDS |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1.1:-42249352 | MS.gene46499:CDS |
| CAGCTGGTCCCATAGGTATA+GGG | 0.428625 | 1.1:+42251618 | None:intergenic |
| ATCATGGGTAGTCGTGGCCT+TGG | 0.451807 | 1.1:-42249336 | MS.gene46499:CDS |
| CCTATGGGACCAGCTGGTAT+TGG | 0.475453 | 1.1:-42251611 | MS.gene46499:intron |
| TTATGCATACCCTATACCTA+TGG | 0.478213 | 1.1:-42251627 | MS.gene46499:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1.1:-42251195 | MS.gene46499:CDS |
| TGCAAGAGAAATGATTTGTC+AGG | 0.490363 | 1.1:-42249388 | MS.gene46499:CDS |
| ATGGCTACTGTTACTATGGA+TGG | 0.500858 | 1.1:-42251713 | MS.gene46499:CDS |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.501962 | 1.1:-42249323 | MS.gene46499:intron |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1.1:-42251168 | MS.gene46499:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1.1:+42249135 | None:intergenic |
| ATCTGAAAATGAGGAGGGAA+TGG | 0.505451 | 1.1:-42251684 | MS.gene46499:CDS |
| TCCATCAACACCTGCAGTTG+GGG | 0.507660 | 1.1:-42251246 | MS.gene46499:CDS |
| TTCAAAGAATCCCCAACTGC+AGG | 0.509746 | 1.1:+42251236 | None:intergenic |
| GAAGCTTGCATGCTCTTAAG+TGG | 0.512814 | 1.1:-42251760 | MS.gene46499:CDS |
| TTTGGTGGCAGAGCATTCCT+TGG | 0.514690 | 1.1:-42249195 | MS.gene46499:intron |
| TATCCATCAACACCTGCAGT+TGG | 0.520703 | 1.1:-42251248 | MS.gene46499:CDS |
| CCAATACCAGCTGGTCCCAT+AGG | 0.521771 | 1.1:+42251611 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1.1:-42251810 | MS.gene46499:CDS |
| TAACGTTGAAGAGGTTATCA+AGG | 0.523668 | 1.1:+42251735 | None:intergenic |
| CTCTTAATCATGGGTAGTCG+TGG | 0.541714 | 1.1:-42249342 | MS.gene46499:CDS |
| AATAGTCACTTACACTTCCA+AGG | 0.548894 | 1.1:+42249178 | None:intergenic |
| TGGAACAACATCTGAAAATG+AGG | 0.557443 | 1.1:-42251693 | MS.gene46499:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1.1:-42249351 | MS.gene46499:CDS |
| CAGTAGCCATAACGTTGAAG+AGG | 0.566949 | 1.1:+42251726 | None:intergenic |
| CCTATACCTATGGGACCAGC+TGG | 0.573743 | 1.1:-42251617 | MS.gene46499:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1.1:-42251823 | MS.gene46499:CDS |
| TATGCATACCCTATACCTAT+GGG | 0.588273 | 1.1:-42251626 | MS.gene46499:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1.1:-42251196 | MS.gene46499:CDS |
| GTATAGGGTATGCATAAGTG+TGG | 0.596401 | 1.1:+42251633 | None:intergenic |
| TGGAAGTGCTGATCAAGTGA+AGG | 0.602448 | 1.1:-42251846 | MS.gene46499:CDS |
| ACGGGCTTTGCAAATGTGCA+AGG | 0.605600 | 1.1:-42251177 | MS.gene46499:CDS |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1.1:-42251801 | MS.gene46499:CDS |
| AACAACATCTGAAAATGAGG+AGG | 0.606982 | 1.1:-42251690 | MS.gene46499:CDS |
| ATATACTGACCAATACCAGC+TGG | 0.618607 | 1.1:+42251602 | None:intergenic |
| GGAAGTGCTGATCAAGTGAA+GGG | 0.624494 | 1.1:-42251845 | MS.gene46499:CDS |
| AACGTTGAAGAGGTTATCAA+GGG | 0.625008 | 1.1:+42251736 | None:intergenic |
| AAGCTTGCATGCTCTTAAGT+GGG | 0.630867 | 1.1:-42251759 | MS.gene46499:CDS |
| ACAACATCTGAAAATGAGGA+GGG | 0.642374 | 1.1:-42251689 | MS.gene46499:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1.1:-42251804 | MS.gene46499:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1.1:-42251782 | MS.gene46499:CDS |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1.1:+42251181 | None:intergenic |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1.1:-42249130 | MS.gene46499:CDS |
| AGGGTGATGGAGGAAATAGG+TGG | 0.693358 | 1.1:-42251866 | None:intergenic |
| AGTGCTGATCAAGTGAAGGG+AGG | 0.758711 | 1.1:-42251842 | MS.gene46499:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTACCAATAAAAAAA+AGG | + | chr1.1:42250965-42250984 | None:intergenic | 10.0% |
| !!! | ATAAATTATGGTTTTAAATT+TGG | - | chr1.1:42251468-42251487 | MS.gene46499:intron | 10.0% |
| !!! | ATTACACTTTTTTTTTTTTA+TGG | - | chr1.1:42250441-42250460 | MS.gene46499:intron | 10.0% |
| !!! | TCTTTTTTTTTTTTTTTTTG+AGG | - | chr1.1:42251175-42251194 | MS.gene46499:CDS | 10.0% |
| !! | AAATAATGACATTAATCAAT+AGG | + | chr1.1:42250152-42250171 | None:intergenic | 15.0% |
| !! | AACTAAAATAATTTCTTTGA+CGG | - | chr1.1:42251088-42251107 | MS.gene46499:intron | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1.1:42250135-42250154 | None:intergenic | 15.0% |
| !! | AATATGATTCTTATAAACAA+TGG | + | chr1.1:42250708-42250727 | None:intergenic | 15.0% |
| !! | TAGTTATTAATTTAGTGATT+TGG | - | chr1.1:42250897-42250916 | MS.gene46499:intron | 15.0% |
| !!! | AAAAAAAAAAGTGTAATTCA+TGG | + | chr1.1:42250438-42250457 | None:intergenic | 15.0% |
| !!! | CTCATGATTTTATTTTTTTA+GGG | - | chr1.1:42250349-42250368 | MS.gene46499:intron | 15.0% |
| !!! | GGTAACTATTTTTTTTTTTA+GGG | - | chr1.1:42250544-42250563 | MS.gene46499:intron | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1.1:42251757-42251776 | MS.gene46499:CDS | 15.0% |
| !!! | TCTCATGATTTTATTTTTTT+AGG | - | chr1.1:42250348-42250367 | MS.gene46499:intron | 15.0% |
| !!! | TGGTAACTATTTTTTTTTTT+AGG | - | chr1.1:42250543-42250562 | MS.gene46499:intron | 15.0% |
| !!! | TGTTTTTATTTTTAGTATAC+AGG | + | chr1.1:42250107-42250126 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTATGGACTTA+TGG | - | chr1.1:42250449-42250468 | MS.gene46499:intron | 15.0% |
| !! | CAATAGGATAAATTAAATGA+AGG | + | chr1.1:42250136-42250155 | None:intergenic | 20.0% |
| !! | TAAAAAAAAGGCAAATTCTA+TGG | + | chr1.1:42250953-42250972 | None:intergenic | 20.0% |
| !! | TGGTACAAATTAAAAATGAA+AGG | + | chr1.1:42250418-42250437 | None:intergenic | 20.0% |
| !! | TTCATGATAAACAGAAAATA+GGG | - | chr1.1:42250017-42250036 | MS.gene46499:intron | 20.0% |
| !! | TTTCATGATAAACAGAAAAT+AGG | - | chr1.1:42250016-42250035 | MS.gene46499:intron | 20.0% |
| !!! | AAAGGAAGATTTTTTTTTGA+AGG | + | chr1.1:42250078-42250097 | None:intergenic | 20.0% |
| !!! | AATAAGCTTGCTAATAATTT+TGG | - | chr1.1:42251712-42251731 | MS.gene46499:CDS | 20.0% |
| !!! | AATTTATGAAATAAGAGTAC+CGG | + | chr1.1:42250596-42250615 | None:intergenic | 20.0% |
| !!! | AGAATTTGCCTTTTTTTTAT+TGG | - | chr1.1:42250954-42250973 | MS.gene46499:intron | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1.1:42251760-42251779 | MS.gene46499:CDS | 20.0% |
| !!! | GTGATGATGTTTTAAAAATT+CGG | - | chr1.1:42251435-42251454 | MS.gene46499:intron | 20.0% |
| ! | AATTATGAGAGAATTAGACA+TGG | + | chr1.1:42249438-42249457 | None:intergenic | 25.0% |
| ! | GAATTAGACATGGAAAAAAA+TGG | + | chr1.1:42249428-42249447 | None:intergenic | 25.0% |
| ! | GTAATATTGCATATGTTAGA+TGG | - | chr1.1:42251333-42251352 | MS.gene46499:intron | 25.0% |
| ! | TACCAATACACTCAAAATTA+TGG | - | chr1.1:42250922-42250941 | MS.gene46499:intron | 25.0% |
| ! | TCATGATAAACAGAAAATAG+GGG | - | chr1.1:42250018-42250037 | MS.gene46499:intron | 25.0% |
| ! | TCTATTCTATATCATGAGAT+TGG | + | chr1.1:42250377-42250396 | None:intergenic | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1.1:42250312-42250331 | None:intergenic | 25.0% |
| ! | TTCTTATAAACAATGGAATG+AGG | + | chr1.1:42250701-42250720 | None:intergenic | 25.0% |
| ! | TTTCATATGCATACTTTCAT+TGG | + | chr1.1:42251524-42251543 | None:intergenic | 25.0% |
| !! | AGGGAATGAACAATTTTAAA+AGG | + | chr1.1:42249889-42249908 | None:intergenic | 25.0% |
| !! | AGTTAACTGTCACTTATATA+AGG | + | chr1.1:42249909-42249928 | None:intergenic | 25.0% |
| !! | GTTAACTGTCACTTATATAA+GGG | + | chr1.1:42249908-42249927 | None:intergenic | 25.0% |
| !! | TTAATATTGTCCATTTTCCT+TGG | - | chr1.1:42249491-42249510 | MS.gene46499:intron | 25.0% |
| !!! | ATCCATAATTTTGAGTGTAT+TGG | + | chr1.1:42250927-42250946 | None:intergenic | 25.0% |
| !!! | ATTTTGGTTTCTTTTATGCA+TGG | - | chr1.1:42251728-42251747 | MS.gene46499:CDS | 25.0% |
| !!! | GAAGATTTTTTTTTGAAGGA+AGG | + | chr1.1:42250074-42250093 | None:intergenic | 25.0% |
| !!! | GGGAATGAACAATTTTAAAA+GGG | + | chr1.1:42249888-42249907 | None:intergenic | 25.0% |
| !!! | TGAGGTTTTTTCTTATGAAT+TGG | + | chr1.1:42250683-42250702 | None:intergenic | 25.0% |
| !!! | TTTTTTTTAGGGAACTTCTA+CGG | - | chr1.1:42250555-42250574 | MS.gene46499:intron | 25.0% |
| AACTTACACAAGTGTATTCT+CGG | + | chr1.1:42249603-42249622 | None:intergenic | 30.0% | |
| AAGTATGCATATGAAAATGC+AGG | - | chr1.1:42251528-42251547 | MS.gene46499:intron | 30.0% | |
| ATGATGTAACTTTGTAAGCT+TGG | - | chr1.1:42249465-42249484 | MS.gene46499:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1.1:42251518-42251537 | None:intergenic | 30.0% | |
| CATGATAAACAGAAAATAGG+GGG | - | chr1.1:42250019-42250038 | MS.gene46499:intron | 30.0% | |
| CTTACGTTACGTTCTTATAT+AGG | - | chr1.1:42250999-42251018 | MS.gene46499:intron | 30.0% | |
| GGTAGAAGCTACATAAATTA+TGG | - | chr1.1:42251456-42251475 | MS.gene46499:intron | 30.0% | |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1.1:42249332-42249351 | None:intergenic | 30.0% | |
| TGCTTAAAAATCAAGTCTGT+TGG | - | chr1.1:42250523-42250542 | MS.gene46499:intron | 30.0% | |
| TTAGTATACAGGAAAGTGAA+AGG | + | chr1.1:42250096-42250115 | None:intergenic | 30.0% | |
| TTCCCATTCCTTTATATCAA+CGG | + | chr1.1:42249962-42249981 | None:intergenic | 30.0% | |
| ! | ACAAAGTATCACACAAGAAA+AGG | + | chr1.1:42249686-42249705 | None:intergenic | 30.0% |
| ! | ACGGAAGTGTATTAAATCTA+TGG | - | chr1.1:42251107-42251126 | MS.gene46499:intron | 30.0% |
| ! | CAAAGTATCACACAAGAAAA+GGG | + | chr1.1:42249685-42249704 | None:intergenic | 30.0% |
| ! | CGGAAGTGTATTAAATCTAT+GGG | - | chr1.1:42251108-42251127 | MS.gene46499:intron | 30.0% |
| ! | TTTCTTTTATGCATGGTTGA+TGG | - | chr1.1:42251735-42251754 | MS.gene46499:CDS | 30.0% |
| !! | AAAGGAAGATGATTGCTTTT+TGG | + | chr1.1:42250045-42250064 | None:intergenic | 30.0% |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1.1:42251619-42251638 | MS.gene46499:CDS | 30.0% |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1.1:42249160-42249179 | MS.gene46499:CDS | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1.1:42249280-42249299 | MS.gene46499:intron | 35.0% | |
| AACGTTGAAGAGGTTATCAA+GGG | + | chr1.1:42249237-42249256 | None:intergenic | 35.0% | |
| AATAGTCACTTACACTTCCA+AGG | + | chr1.1:42251795-42251814 | None:intergenic | 35.0% | |
| ACAAACATTATTCTCTCGTC+AGG | - | chr1.1:42250218-42250237 | MS.gene46499:intron | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1.1:42249281-42249300 | MS.gene46499:intron | 35.0% | |
| ATGGATAAACAGCTGTTGAA+AGG | + | chr1.1:42249709-42249728 | None:intergenic | 35.0% | |
| CAGAAATGAGCAAAATCAGA+TGG | + | chr1.1:42249548-42249567 | None:intergenic | 35.0% | |
| CATAGTATATATGCACGACT+AGG | + | chr1.1:42250479-42250498 | None:intergenic | 35.0% | |
| CGTCAGGATAGTAAAATCAA+CGG | - | chr1.1:42250234-42250253 | MS.gene46499:intron | 35.0% | |
| GGGAATGAGCAAAAATAGAT+GGG | - | chr1.1:42249646-42249665 | MS.gene46499:intron | 35.0% | |
| GTGCATATATACTATGACCT+TGG | - | chr1.1:42250483-42250502 | MS.gene46499:intron | 35.0% | |
| TAACGTTGAAGAGGTTATCA+AGG | + | chr1.1:42249238-42249257 | None:intergenic | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1.1:42249344-42249363 | MS.gene46499:CDS | 35.0% | |
| TGATAACCTCTTCAACGTTA+TGG | - | chr1.1:42249238-42249257 | MS.gene46499:intron | 35.0% | |
| TGCCGTTGATATAAAGGAAT+GGG | - | chr1.1:42249957-42249976 | MS.gene46499:intron | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1.1:42249277-42249296 | MS.gene46499:intron | 35.0% | |
| TGGAAGTAAGCAAAGAAAGT+TGG | + | chr1.1:42249408-42249427 | None:intergenic | 35.0% | |
| TGTGTAAGTTAATTCACGCT+CGG | - | chr1.1:42249613-42249632 | MS.gene46499:intron | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1.1:42249343-42249362 | MS.gene46499:CDS | 35.0% | |
| TTTGAAGGAAGGAAAGTGAA+AGG | + | chr1.1:42250063-42250082 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1.1:42251556-42251575 | MS.gene46499:intron | 35.0% |
| ! | TGCAAGAGAAATGATTTGTC+AGG | - | chr1.1:42251582-42251601 | MS.gene46499:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1.1:42251618-42251637 | MS.gene46499:CDS | 35.0% |
| AAGCTTGCATGCTCTTAAGT+GGG | - | chr1.1:42249211-42249230 | MS.gene46499:intron | 40.0% | |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1.1:42249166-42249185 | MS.gene46499:CDS | 40.0% | |
| ATATACTGACCAATACCAGC+TGG | + | chr1.1:42249371-42249390 | None:intergenic | 40.0% | |
| ATCTGAAAATGAGGAGGGAA+TGG | - | chr1.1:42249286-42249305 | MS.gene46499:intron | 40.0% | |
| ATGGCTACTGTTACTATGGA+TGG | - | chr1.1:42249257-42249276 | MS.gene46499:intron | 40.0% | |
| ATTCAGATGCTCTTTAGCCA+AGG | + | chr1.1:42250503-42250522 | None:intergenic | 40.0% | |
| CAGATGGAAGAAGAGCAATT+TGG | + | chr1.1:42249532-42249551 | None:intergenic | 40.0% | |
| CGGGAATGAGCAAAAATAGA+TGG | - | chr1.1:42249645-42249664 | MS.gene46499:intron | 40.0% | |
| CGTTATGGCTACTGTTACTA+TGG | - | chr1.1:42249253-42249272 | MS.gene46499:intron | 40.0% | |
| CTGCCGTTGATATAAAGGAA+TGG | - | chr1.1:42249956-42249975 | MS.gene46499:intron | 40.0% | |
| GAAATGAGTCTCGCTTTACA+AGG | + | chr1.1:42251041-42251060 | None:intergenic | 40.0% | |
| GAGCAATTCTCCAAGGAAAA+TGG | + | chr1.1:42249504-42249523 | None:intergenic | 40.0% | |
| GGAAAAAGAGCAATTCTCCA+AGG | + | chr1.1:42249511-42249530 | None:intergenic | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1.1:42249340-42249359 | None:intergenic | 40.0% | |
| TTCTCGGTATGAGTTAACTC+AGG | + | chr1.1:42249587-42249606 | None:intergenic | 40.0% | |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1.1:42249765-42249784 | None:intergenic | 40.0% |
| ! | GAGTACTGCCGTTGATATAA+AGG | - | chr1.1:42249951-42249970 | MS.gene46499:intron | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1.1:42249766-42249785 | None:intergenic | 40.0% |
| ! | TTTTTACGGAACTTCCGTCA+AGG | + | chr1.1:42251063-42251082 | None:intergenic | 40.0% |
| !! | CAGTACTCGACATTTTTCAG+TGG | + | chr1.1:42249939-42249958 | None:intergenic | 40.0% |
| !!! | CTTACCTTTTGAGTTTGCCA+AGG | + | chr1.1:42251654-42251673 | None:intergenic | 40.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1.1:42249774-42249793 | MS.gene46499:intron | 45.0% | |
| AGCGAGACTCATTTCCTTGA+CGG | - | chr1.1:42251046-42251065 | MS.gene46499:intron | 45.0% | |
| ATCCATCAACACCTGCAGTT+GGG | - | chr1.1:42249723-42249742 | MS.gene46499:intron | 45.0% | |
| CAGTAGCCATAACGTTGAAG+AGG | + | chr1.1:42249247-42249266 | None:intergenic | 45.0% | |
| CTCTTAATCATGGGTAGTCG+TGG | - | chr1.1:42251628-42251647 | MS.gene46499:CDS | 45.0% | |
| GAAGCTTGCATGCTCTTAAG+TGG | - | chr1.1:42249210-42249229 | MS.gene46499:intron | 45.0% | |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1.1:42249147-42249166 | MS.gene46499:CDS | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1.1:42249802-42249821 | MS.gene46499:intron | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1.1:42251838-42251857 | None:intergenic | 45.0% | |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1.1:42249188-42249207 | MS.gene46499:intron | 45.0% | |
| TATCCATCAACACCTGCAGT+TGG | - | chr1.1:42249722-42249741 | MS.gene46499:intron | 45.0% | |
| TTCAAAGAATCCCCAACTGC+AGG | + | chr1.1:42249737-42249756 | None:intergenic | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1.1:42249169-42249188 | MS.gene46499:CDS | 45.0% |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1.1:42251856-42251875 | None:intergenic | 45.0% |
| !! | GGAAGTGCTGATCAAGTGAA+GGG | - | chr1.1:42249125-42249144 | MS.gene46499:CDS | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1.1:42251859-42251878 | None:intergenic | 45.0% |
| !! | TGGAAGTGCTGATCAAGTGA+AGG | - | chr1.1:42249124-42249143 | MS.gene46499:CDS | 45.0% |
| !! | TTCACGCTCGGCTATTTTGA+CGG | - | chr1.1:42249625-42249644 | MS.gene46499:intron | 45.0% |
| !! | CATAAATATTAAATAAATTT+AGG | + | chr1.1:42251394-42251413 | None:intergenic | 5.0% |
| !! | TTTAATATAAAATATACAAT+TGG | + | chr1.1:42251236-42251255 | None:intergenic | 5.0% |
| !!! | ATTTTAGTTTTTTTTTTTTA+CGG | + | chr1.1:42251077-42251096 | None:intergenic | 5.0% |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1.1:42249793-42249812 | MS.gene46499:intron | 50.0% | |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1.1:42249775-42249794 | MS.gene46499:intron | 50.0% | |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1.1:42249355-42249374 | None:intergenic | 50.0% | |
| GAACTTCTACGGTACACCTG+AGG | - | chr1.1:42250566-42250585 | MS.gene46499:intron | 50.0% | |
| TCCATCAACACCTGCAGTTG+GGG | - | chr1.1:42249724-42249743 | MS.gene46499:intron | 50.0% | |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1.1:42251840-42251859 | MS.gene46499:CDS | 50.0% | |
| TGTGCAAGGATAAGCAGGTG+CGG | - | chr1.1:42249807-42249826 | MS.gene46499:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1.1:42251647-42251666 | MS.gene46499:CDS | 50.0% |
| ! | TTTGGTGGCAGAGCATTCCT+TGG | - | chr1.1:42251775-42251794 | MS.gene46499:CDS | 50.0% |
| !! | AGTGCTGATCAAGTGAAGGG+AGG | - | chr1.1:42249128-42249147 | MS.gene46499:CDS | 50.0% |
| !! | TAAGAGTACCGGTACACCTC+AGG | + | chr1.1:42250585-42250604 | None:intergenic | 50.0% |
| !!! | TCACGCTCGGCTATTTTGAC+GGG | - | chr1.1:42249626-42249645 | MS.gene46499:intron | 50.0% |
| ACGGTACACCTGAGGTGTAC+CGG | - | chr1.1:42250574-42250593 | MS.gene46499:intron | 55.0% | |
| ATCATGGGTAGTCGTGGCCT+TGG | - | chr1.1:42251634-42251653 | MS.gene46499:CDS | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1.1:42249362-42249381 | None:intergenic | 55.0% | |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1.1:42249356-42249375 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1.1:42249353-42249372 | MS.gene46499:CDS | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1.1:42249359-42249378 | MS.gene46499:CDS | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1.1:42249792-42249811 | None:intergenic | 55.0% | |
| !! | TCCCCAACTGCAGGTGTTGA+TGG | + | chr1.1:42249728-42249747 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 42249110 | 42251882 | 42249110 | ID=MS.gene46499 |
| chr1.1 | mRNA | 42249110 | 42251882 | 42249110 | ID=MS.gene46499.t1;Parent=MS.gene46499 |
| chr1.1 | exon | 42251612 | 42251882 | 42251612 | ID=MS.gene46499.t1.exon1;Parent=MS.gene46499.t1 |
| chr1.1 | CDS | 42251612 | 42251882 | 42251612 | ID=cds.MS.gene46499.t1;Parent=MS.gene46499.t1 |
| chr1.1 | exon | 42251169 | 42251275 | 42251169 | ID=MS.gene46499.t1.exon2;Parent=MS.gene46499.t1 |
| chr1.1 | CDS | 42251169 | 42251275 | 42251169 | ID=cds.MS.gene46499.t1;Parent=MS.gene46499.t1 |
| chr1.1 | exon | 42249324 | 42249442 | 42249324 | ID=MS.gene46499.t1.exon3;Parent=MS.gene46499.t1 |
| chr1.1 | CDS | 42249324 | 42249442 | 42249324 | ID=cds.MS.gene46499.t1;Parent=MS.gene46499.t1 |
| chr1.1 | exon | 42249110 | 42249206 | 42249110 | ID=MS.gene46499.t1.exon4;Parent=MS.gene46499.t1 |
| chr1.1 | CDS | 42249110 | 42249206 | 42249110 | ID=cds.MS.gene46499.t1;Parent=MS.gene46499.t1 |
| Gene Sequence |
| Protein sequence |
