Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46903.t1 | XP_003603496.1 | 99.3 | 273 | 2 | 0 | 1 | 273 | 1 | 273 | 3.30E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46903.t1 | P50346 | 93.0 | 273 | 19 | 0 | 1 | 273 | 1 | 273 | 2.0e-136 | 486.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46903.t1 | G7JC94 | 99.3 | 273 | 2 | 0 | 1 | 273 | 1 | 273 | 2.4e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene46903 | 0.840444 | 8.66E-58 | -1.69E-46 |
| MS.gene050134 | MS.gene46903 | 0.817423 | 3.32E-52 | -1.69E-46 |
| MS.gene050791 | MS.gene46903 | 0.829142 | 6.07E-55 | -1.69E-46 |
| MS.gene051984 | MS.gene46903 | 0.826467 | 2.67E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene46903 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene052664 | MS.gene46903 | 0.840682 | 7.50E-58 | -1.69E-46 |
| MS.gene055232 | MS.gene46903 | 0.800742 | 1.25E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene46903 | 0.800949 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46903.t1 | MTR_3g108280 | 99.267 | 273 | 2 | 0 | 1 | 273 | 1 | 273 | 0.0 | 546 |
| MS.gene46903.t1 | MTR_5g082180 | 95.604 | 273 | 12 | 0 | 1 | 273 | 1 | 273 | 0.0 | 524 |
| MS.gene46903.t1 | MTR_7g022400 | 68.269 | 104 | 32 | 1 | 11 | 113 | 7 | 110 | 4.06e-42 | 143 |
| MS.gene46903.t1 | MTR_7g112750 | 67.089 | 79 | 25 | 1 | 11 | 88 | 7 | 85 | 3.34e-27 | 104 |
| MS.gene46903.t1 | MTR_3g074840 | 64.706 | 85 | 8 | 2 | 86 | 169 | 1 | 64 | 5.27e-22 | 89.0 |
| MS.gene46903.t1 | MTR_1g044130 | 96.774 | 31 | 1 | 0 | 243 | 273 | 1 | 31 | 2.01e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46903.t1 | AT3G09200 | 89.299 | 271 | 29 | 0 | 3 | 273 | 2 | 272 | 3.87e-176 | 488 |
| MS.gene46903.t1 | AT2G40010 | 87.912 | 273 | 33 | 0 | 1 | 273 | 1 | 273 | 4.27e-175 | 485 |
| MS.gene46903.t1 | AT3G11250 | 88.192 | 271 | 32 | 0 | 3 | 273 | 2 | 272 | 2.51e-174 | 484 |
| MS.gene46903.t1 | AT3G09200 | 78.229 | 271 | 26 | 1 | 3 | 273 | 2 | 239 | 6.77e-146 | 410 |
| MS.gene46903.t1 | AT1G25260 | 22.685 | 216 | 146 | 4 | 10 | 214 | 16 | 221 | 1.62e-11 | 63.2 |
Find 81 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAGACCTCTTTCTTCC+AGG | 0.252116 | 3.1:+86380359 | MS.gene46903:CDS |
| CAGCGTTGACAACAAGGATT+TGG | 0.257235 | 3.1:-86378902 | None:intergenic |
| CATGGTCACTTCACTTTCAT+TGG | 0.278087 | 3.1:+86380690 | MS.gene46903:CDS |
| ATCGTAGTTCTGCTTCTTCT+CGG | 0.310851 | 3.1:-86378847 | None:intergenic |
| CACAGTACCCTTGTTAATCT+TGG | 0.311903 | 3.1:-86380464 | None:intergenic |
| TTGTAGCGAAGTTTGCTATT+GGG | 0.333941 | 3.1:+86380662 | MS.gene46903:CDS |
| GCTGCATTGCTTGCCAAGTT+AGG | 0.382522 | 3.1:+86380544 | MS.gene46903:CDS |
| TCCTTAACCTTGTCTGCCTC+AGG | 0.389206 | 3.1:-86380808 | None:intergenic |
| CTTGTAGCGAAGTTTGCTAT+TGG | 0.396386 | 3.1:+86380661 | MS.gene46903:CDS |
| GTTGAGAAAAGCATTGTTGC+CGG | 0.397292 | 3.1:-86379042 | None:intergenic |
| GTTCTGCTTCTTCTCGGCTT+TGG | 0.398033 | 3.1:-86378841 | None:intergenic |
| AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 3.1:+86380287 | MS.gene46903:CDS |
| AAAAGCAAGAACGTTCTTGT+AGG | 0.409408 | 3.1:-86380761 | None:intergenic |
| GGAGGAACAACGACATCAAT+TGG | 0.410263 | 3.1:-86380315 | None:intergenic |
| TACCCTTGTTAATCTTGGTT+GGG | 0.415505 | 3.1:-86380459 | None:intergenic |
| GGGTCGAGCCCTGTGTTGCC+TGG | 0.431244 | 3.1:-86380336 | None:intergenic |
| CCTTTCTTAATGAGTTCCAC+AGG | 0.432079 | 3.1:-86380499 | None:intergenic |
| TGGTGACTCCGTTGTTCTCA+TGG | 0.440885 | 3.1:+86378971 | MS.gene46903:CDS |
| TGCCTCAGGGAAATAATATT+CGG | 0.446178 | 3.1:-86380794 | None:intergenic |
| TCAGTGAGGTCAAGAACCTC+AGG | 0.450763 | 3.1:-86380631 | None:intergenic |
| GACCACAAGCCCGTATGAAA+AGG | 0.451799 | 3.1:-86380575 | None:intergenic |
| AGCGTTGACAACAAGGATTT+GGG | 0.451933 | 3.1:-86378901 | None:intergenic |
| AGAAAACTAACGACAAGAAG+AGG | 0.456056 | 3.1:-86379071 | None:intergenic |
| CCCTGAGGCAGACAAGGTTA+AGG | 0.465890 | 3.1:+86380807 | MS.gene46903:CDS |
| TTTCACTAAAGGTGACTTGA+AGG | 0.469610 | 3.1:+86379932 | MS.gene46903:CDS |
| ATTGATGTCGTTGTTCCTCC+AGG | 0.473267 | 3.1:+86380318 | MS.gene46903:CDS |
| TCAGCTACAGAACATTCGTC+AGG | 0.474511 | 3.1:+86378941 | MS.gene46903:CDS |
| GAGGAGCAGCGGCAAGTGTT+GGG | 0.477710 | 3.1:-86380723 | None:intergenic |
| TGTAGCGAAGTTTGCTATTG+GGG | 0.487853 | 3.1:+86380663 | MS.gene46903:CDS |
| TGAGGAGCAGCGGCAAGTGT+TGG | 0.489867 | 3.1:-86380724 | None:intergenic |
| GTCCTCTCTGTTTATGACAA+TGG | 0.495884 | 3.1:+86380595 | MS.gene46903:CDS |
| GTTTGCTATTGGGGTTTCCA+TGG | 0.497232 | 3.1:+86380672 | MS.gene46903:CDS |
| TGCTTGCCAAGTTAGGCATT+AGG | 0.501788 | 3.1:+86380551 | MS.gene46903:CDS |
| GGGTGTATTCATCGATAAGC+TGG | 0.506884 | 3.1:-86378881 | None:intergenic |
| GTACCCTTGTTAATCTTGGT+TGG | 0.507788 | 3.1:-86380460 | None:intergenic |
| GCAACCAAACCAACACGAGC+AGG | 0.521300 | 3.1:-86380291 | None:intergenic |
| CGTATGCACGCTGAGAAAAC+CGG | 0.521724 | 3.1:+86379023 | MS.gene46903:CDS |
| AAAGGGCCTAATGCCTAACT+TGG | 0.523198 | 3.1:-86380557 | None:intergenic |
| TGCTTCTTCTCGGCTTTGGT+AGG | 0.531501 | 3.1:-86378837 | None:intergenic |
| ACCACAAGCCCGTATGAAAA+GGG | 0.531757 | 3.1:-86380574 | None:intergenic |
| GTTGGAGCTCCTGCTCGTGT+TGG | 0.532062 | 3.1:+86380282 | MS.gene46903:CDS |
| TAGGCATTGACGAACATATG+AGG | 0.532355 | 3.1:-86380742 | None:intergenic |
| CAATAGCAAACTTCGCTACA+AGG | 0.533756 | 3.1:-86380660 | None:intergenic |
| TGGAAGAAAGAGGTCTGAGA+TGG | 0.537477 | 3.1:-86380357 | None:intergenic |
| GTGCTGAATCAGGGAAATGT+TGG | 0.555601 | 3.1:+86379903 | MS.gene46903:intron |
| TAACGACAAGAAGAGGGATA+AGG | 0.557262 | 3.1:-86379064 | None:intergenic |
| ATTAAGAAAGGAGACAAGGT+TGG | 0.560082 | 3.1:+86380511 | MS.gene46903:CDS |
| CCTGTGGAACTCATTAAGAA+AGG | 0.562398 | 3.1:+86380499 | MS.gene46903:CDS |
| GTTGTTCCTCCAGGCAACAC+AGG | 0.564540 | 3.1:+86380327 | MS.gene46903:CDS |
| CATCCCAACCAAGATTAACA+AGG | 0.566179 | 3.1:+86380456 | MS.gene46903:CDS |
| CTTTCTTAATGAGTTCCACA+GGG | 0.574196 | 3.1:-86380498 | None:intergenic |
| GATAACAACCTGGAAGAAAG+AGG | 0.574328 | 3.1:-86380367 | None:intergenic |
| CGTTGTCAGCGTTGACAACA+AGG | 0.575399 | 3.1:-86378908 | None:intergenic |
| GGTGACTCCGTTGTTCTCAT+GGG | 0.580224 | 3.1:+86378972 | MS.gene46903:CDS |
| ACGAACAGATCGCTTCATCA+TGG | 0.583200 | 3.1:-86379003 | None:intergenic |
| CCTTAACCTTGTCTGCCTCA+GGG | 0.589860 | 3.1:-86380807 | None:intergenic |
| GGAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 3.1:-86380356 | None:intergenic |
| TTATTTCCCTGAGGCAGACA+AGG | 0.600567 | 3.1:+86380801 | MS.gene46903:CDS |
| GGCAAGTGTTGGGTAAGAGA+TGG | 0.602128 | 3.1:-86380713 | None:intergenic |
| GAAAACTAACGACAAGAAGA+GGG | 0.606607 | 3.1:-86379070 | None:intergenic |
| TTGTTCCTCCAGGCAACACA+GGG | 0.611479 | 3.1:+86380328 | MS.gene46903:CDS |
| CAAGATTAACAAGGGTACTG+TGG | 0.615021 | 3.1:+86380465 | MS.gene46903:CDS |
| TGAAGAAGTTGCTAAATACA+AGG | 0.626443 | 3.1:+86379962 | MS.gene46903:CDS |
| GACGAACATATGAGGAGCAG+CGG | 0.628131 | 3.1:-86380734 | None:intergenic |
| CAGCTACAGAACATTCGTCA+GGG | 0.630095 | 3.1:+86378942 | MS.gene46903:CDS |
| GTTGTCAACGCTGACAACGT+TGG | 0.630374 | 3.1:+86378912 | MS.gene46903:CDS |
| TGGTTCAGTGTTTAGCCCTG+AGG | 0.633517 | 3.1:+86380615 | MS.gene46903:CDS |
| CAATGAAAGTGAAGTGACCA+TGG | 0.657879 | 3.1:-86380689 | None:intergenic |
| CAAGGTTAAGGAGTACCTGA+AGG | 0.661074 | 3.1:+86380819 | MS.gene46903:CDS |
| GTTCTTTCCCATGAGAACAA+CGG | 0.664224 | 3.1:-86378979 | None:intergenic |
| ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 3.1:+86380457 | MS.gene46903:CDS |
| AACATTCGTCAGGGTCTACG+TGG | 0.667957 | 3.1:+86378951 | MS.gene46903:CDS |
| TGTGGAAATTATTACCCCTG+TGG | 0.672323 | 3.1:+86380483 | MS.gene46903:CDS |
| ACTCATTAAGAAAGGAGACA+AGG | 0.674494 | 3.1:+86380507 | MS.gene46903:CDS |
| TCGAGCCCTGTGTTGCCTGG+AGG | 0.687408 | 3.1:-86380333 | None:intergenic |
| CAGTGAGGTCAAGAACCTCA+GGG | 0.701495 | 3.1:-86380630 | None:intergenic |
| TGAGGTTCTTGACCTCACTG+AGG | 0.710337 | 3.1:+86380633 | MS.gene46903:CDS |
| AACCATTGTCATAAACAGAG+AGG | 0.717707 | 3.1:-86380597 | None:intergenic |
| TACCGAATATTATTTCCCTG+AGG | 0.725295 | 3.1:+86380792 | MS.gene46903:CDS |
| TTTCTTAATGAGTTCCACAG+GGG | 0.725748 | 3.1:-86380497 | None:intergenic |
| CTACAAGGTCATCCTCAGTG+AGG | 0.743500 | 3.1:-86380645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCTTATAAATAATACATA+GGG | + | chr3.1:86379440-86379459 | MS.gene46903:intron | 15.0% |
| !! | TAAGCTTATAAATAATACAT+AGG | + | chr3.1:86379439-86379458 | MS.gene46903:intron | 15.0% |
| !! | TATTATTTATAAGCTTATCA+AGG | - | chr3.1:86379436-86379455 | None:intergenic | 15.0% |
| !!! | AGTCTAACTTTATTTATAAT+GGG | + | chr3.1:86379291-86379310 | MS.gene46903:intron | 15.0% |
| !! | TAATTGTCTTAAATCTGAAT+AGG | + | chr3.1:86380260-86380279 | MS.gene46903:intron | 20.0% |
| !! | TATGCAAATAAATAAGCTTA+TGG | - | chr3.1:86379669-86379688 | None:intergenic | 20.0% |
| !!! | CAGTCTAACTTTATTTATAA+TGG | + | chr3.1:86379290-86379309 | MS.gene46903:intron | 20.0% |
| !!! | GTCTAACTTTATTTATAATG+GGG | + | chr3.1:86379292-86379311 | MS.gene46903:intron | 20.0% |
| ! | AATTACTGCACTATATTATG+AGG | + | chr3.1:86379844-86379863 | MS.gene46903:intron | 25.0% |
| ! | ATATGTTATGTTGTTAAGCA+TGG | + | chr3.1:86380009-86380028 | MS.gene46903:intron | 25.0% |
| ! | ATTTACAGAAATTGTAACGA+GGG | - | chr3.1:86380154-86380173 | None:intergenic | 25.0% |
| ! | CTTTATGTTAATTCACAAGT+GGG | + | chr3.1:86379369-86379388 | MS.gene46903:intron | 25.0% |
| ! | TAGTGAGAACTTATGAATTA+AGG | + | chr3.1:86379578-86379597 | MS.gene46903:intron | 25.0% |
| ! | TATTTACAGAAATTGTAACG+AGG | - | chr3.1:86380155-86380174 | None:intergenic | 25.0% |
| ! | TCTTTATGTTAATTCACAAG+TGG | + | chr3.1:86379368-86379387 | MS.gene46903:intron | 25.0% |
| ! | TTATGTTTATTCTCCACTTT+AGG | + | chr3.1:86380426-86380445 | MS.gene46903:intron | 25.0% |
| ! | TTTAAAAGAAGATAACAACC+TGG | - | chr3.1:86380380-86380399 | None:intergenic | 25.0% |
| !! | TTTAGTGATTTTGTGTGATT+TGG | + | chr3.1:86379146-86379165 | MS.gene46903:intron | 25.0% |
| !!! | TTCTGTTTTTTGTTACGTAT+AGG | + | chr3.1:86379182-86379201 | MS.gene46903:intron | 25.0% |
| AAAATAAGCTCAATCCAAAC+GGG | + | chr3.1:86379642-86379661 | MS.gene46903:intron | 30.0% | |
| AATAATACATAGGGTCTGTT+TGG | + | chr3.1:86379449-86379468 | MS.gene46903:intron | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | + | chr3.1:86379641-86379660 | MS.gene46903:intron | 30.0% | |
| TGAAGAAGTTGCTAAATACA+AGG | + | chr3.1:86379962-86379981 | MS.gene46903:CDS | 30.0% | |
| TGTCTTAAATCTGAATAGGT+TGG | + | chr3.1:86380264-86380283 | MS.gene46903:intron | 30.0% | |
| TTCGCTGTTCGATTTAATAA+TGG | + | chr3.1:86379113-86379132 | MS.gene46903:intron | 30.0% | |
| TTTAGCTGTCTATACAAACA+AGG | + | chr3.1:86379773-86379792 | MS.gene46903:intron | 30.0% | |
| ! | AATACTTTTCGTTTGATGCA+TGG | + | chr3.1:86380174-86380193 | MS.gene46903:intron | 30.0% |
| ! | TATTGTTGTTAACTCTTGTG+AGG | + | chr3.1:86379876-86379895 | MS.gene46903:intron | 30.0% |
| !!! | GTTGGTTTGATTTTCACTAA+AGG | + | chr3.1:86379921-86379940 | MS.gene46903:CDS | 30.0% |
| AAAAGCAAGAACGTTCTTGT+AGG | - | chr3.1:86380764-86380783 | None:intergenic | 35.0% | |
| AAATAAGCTCAATCCAAACG+GGG | + | chr3.1:86379643-86379662 | MS.gene46903:intron | 35.0% | |
| AACCATTGTCATAAACAGAG+AGG | - | chr3.1:86380600-86380619 | None:intergenic | 35.0% | |
| ACTCATTAAGAAAGGAGACA+AGG | + | chr3.1:86380507-86380526 | MS.gene46903:CDS | 35.0% | |
| AGAAAACTAACGACAAGAAG+AGG | - | chr3.1:86379074-86379093 | None:intergenic | 35.0% | |
| ATCCCAACCAAGATTAACAA+GGG | + | chr3.1:86380457-86380476 | MS.gene46903:CDS | 35.0% | |
| ATTAAGAAAGGAGACAAGGT+TGG | + | chr3.1:86380511-86380530 | MS.gene46903:CDS | 35.0% | |
| CATTCAACAAACAAGACAAG+TGG | - | chr3.1:86380227-86380246 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGTTCCACA+GGG | - | chr3.1:86380501-86380520 | None:intergenic | 35.0% | |
| GAAAACTAACGACAAGAAGA+GGG | - | chr3.1:86379073-86379092 | None:intergenic | 35.0% | |
| TACCCTTGTTAATCTTGGTT+GGG | - | chr3.1:86380462-86380481 | None:intergenic | 35.0% | |
| TACCGAATATTATTTCCCTG+AGG | + | chr3.1:86380792-86380811 | MS.gene46903:CDS | 35.0% | |
| TGCCTCAGGGAAATAATATT+CGG | - | chr3.1:86380797-86380816 | None:intergenic | 35.0% | |
| TTTCACTAAAGGTGACTTGA+AGG | + | chr3.1:86379932-86379951 | MS.gene46903:CDS | 35.0% | |
| TTTCTTAATGAGTTCCACAG+GGG | - | chr3.1:86380500-86380519 | None:intergenic | 35.0% | |
| !! | TTGTAGCGAAGTTTGCTATT+GGG | + | chr3.1:86380662-86380681 | MS.gene46903:CDS | 35.0% |
| CAATAGCAAACTTCGCTACA+AGG | - | chr3.1:86380663-86380682 | None:intergenic | 40.0% | |
| CAATGAAAGTGAAGTGACCA+TGG | - | chr3.1:86380692-86380711 | None:intergenic | 40.0% | |
| CACAGTACCCTTGTTAATCT+TGG | - | chr3.1:86380467-86380486 | None:intergenic | 40.0% | |
| CATCCCAACCAAGATTAACA+AGG | + | chr3.1:86380456-86380475 | MS.gene46903:CDS | 40.0% | |
| CATGGTCACTTCACTTTCAT+TGG | + | chr3.1:86380690-86380709 | MS.gene46903:CDS | 40.0% | |
| CCTGTGGAACTCATTAAGAA+AGG | + | chr3.1:86380499-86380518 | MS.gene46903:CDS | 40.0% | |
| CCTTTCTTAATGAGTTCCAC+AGG | - | chr3.1:86380502-86380521 | None:intergenic | 40.0% | |
| GATAACAACCTGGAAGAAAG+AGG | - | chr3.1:86380370-86380389 | None:intergenic | 40.0% | |
| GTACCCTTGTTAATCTTGGT+TGG | - | chr3.1:86380463-86380482 | None:intergenic | 40.0% | |
| GTCCTCTCTGTTTATGACAA+TGG | + | chr3.1:86380595-86380614 | MS.gene46903:CDS | 40.0% | |
| GTTCTTTCCCATGAGAACAA+CGG | - | chr3.1:86378982-86379001 | None:intergenic | 40.0% | |
| TAACGACAAGAAGAGGGATA+AGG | - | chr3.1:86379067-86379086 | None:intergenic | 40.0% | |
| TGAGGATTTGTGCTGAATCA+GGG | + | chr3.1:86379894-86379913 | MS.gene46903:intron | 40.0% | |
| TGTGGAAATTATTACCCCTG+TGG | + | chr3.1:86380483-86380502 | MS.gene46903:CDS | 40.0% | |
| ! | ATAATGGGGCGTGTTTGAAT+TGG | + | chr3.1:86379306-86379325 | MS.gene46903:intron | 40.0% |
| ! | ATCGTAGTTCTGCTTCTTCT+CGG | - | chr3.1:86378850-86378869 | None:intergenic | 40.0% |
| ! | CACTAGAGGTGCAACAAAAA+TGG | - | chr3.1:86380081-86380100 | None:intergenic | 40.0% |
| ! | TTTTTGTTGCACCTCTAGTG+AGG | + | chr3.1:86380081-86380100 | MS.gene46903:intron | 40.0% |
| !! | AGCGTTGACAACAAGGATTT+GGG | - | chr3.1:86378904-86378923 | None:intergenic | 40.0% |
| !! | CAAGATTAACAAGGGTACTG+TGG | + | chr3.1:86380465-86380484 | MS.gene46903:CDS | 40.0% |
| !! | CTTGTAGCGAAGTTTGCTAT+TGG | + | chr3.1:86380661-86380680 | MS.gene46903:CDS | 40.0% |
| !! | GTTGAGAAAAGCATTGTTGC+CGG | - | chr3.1:86379045-86379064 | None:intergenic | 40.0% |
| !! | TAGGCATTGACGAACATATG+AGG | - | chr3.1:86380745-86380764 | None:intergenic | 40.0% |
| !! | TGTAGCGAAGTTTGCTATTG+GGG | + | chr3.1:86380663-86380682 | MS.gene46903:CDS | 40.0% |
| AAAGGGCCTAATGCCTAACT+TGG | - | chr3.1:86380560-86380579 | None:intergenic | 45.0% | |
| AATAAGCTTATGGCCCCGTT+TGG | - | chr3.1:86379659-86379678 | None:intergenic | 45.0% | |
| ACCACAAGCCCGTATGAAAA+GGG | - | chr3.1:86380577-86380596 | None:intergenic | 45.0% | |
| ACGAACAGATCGCTTCATCA+TGG | - | chr3.1:86379006-86379025 | None:intergenic | 45.0% | |
| ATCTCAGACCTCTTTCTTCC+AGG | + | chr3.1:86380359-86380378 | MS.gene46903:CDS | 45.0% | |
| ATTGATGTCGTTGTTCCTCC+AGG | + | chr3.1:86380318-86380337 | MS.gene46903:CDS | 45.0% | |
| CAGCTACAGAACATTCGTCA+GGG | + | chr3.1:86378942-86378961 | MS.gene46903:CDS | 45.0% | |
| GGAGGAACAACGACATCAAT+TGG | - | chr3.1:86380318-86380337 | None:intergenic | 45.0% | |
| GGGTGTATTCATCGATAAGC+TGG | - | chr3.1:86378884-86378903 | None:intergenic | 45.0% | |
| GTGAGGATTTGTGCTGAATC+AGG | + | chr3.1:86379893-86379912 | MS.gene46903:intron | 45.0% | |
| GTGCTGAATCAGGGAAATGT+TGG | + | chr3.1:86379903-86379922 | MS.gene46903:intron | 45.0% | |
| TCAGCTACAGAACATTCGTC+AGG | + | chr3.1:86378941-86378960 | MS.gene46903:CDS | 45.0% | |
| TGCTTGCCAAGTTAGGCATT+AGG | + | chr3.1:86380551-86380570 | MS.gene46903:CDS | 45.0% | |
| TGGAAGAAAGAGGTCTGAGA+TGG | - | chr3.1:86380360-86380379 | None:intergenic | 45.0% | |
| TTATTTCCCTGAGGCAGACA+AGG | + | chr3.1:86380801-86380820 | MS.gene46903:CDS | 45.0% | |
| ! | GCATTAGGCCCTTTTCATAC+GGG | + | chr3.1:86380566-86380585 | MS.gene46903:CDS | 45.0% |
| ! | GGAAGAAAGAGGTCTGAGAT+GGG | - | chr3.1:86380359-86380378 | None:intergenic | 45.0% |
| ! | GGCATTAGGCCCTTTTCATA+CGG | + | chr3.1:86380565-86380584 | MS.gene46903:CDS | 45.0% |
| !! | CAGCGTTGACAACAAGGATT+TGG | - | chr3.1:86378905-86378924 | None:intergenic | 45.0% |
| !! | GTTTGCTATTGGGGTTTCCA+TGG | + | chr3.1:86380672-86380691 | MS.gene46903:CDS | 45.0% |
| !! | AACTTATAAATAATAAATAA+AGG | - | chr3.1:86379510-86379529 | None:intergenic | 5.0% |
| AACATTCGTCAGGGTCTACG+TGG | + | chr3.1:86378951-86378970 | MS.gene46903:CDS | 50.0% | |
| CAACCACAGTACCTCACTAG+AGG | - | chr3.1:86380095-86380114 | None:intergenic | 50.0% | |
| CAGTGAGGTCAAGAACCTCA+GGG | - | chr3.1:86380633-86380652 | None:intergenic | 50.0% | |
| CCTTAACCTTGTCTGCCTCA+GGG | - | chr3.1:86380810-86380829 | None:intergenic | 50.0% | |
| CGTATGCACGCTGAGAAAAC+CGG | + | chr3.1:86379023-86379042 | MS.gene46903:CDS | 50.0% | |
| CTACAAGGTCATCCTCAGTG+AGG | - | chr3.1:86380648-86380667 | None:intergenic | 50.0% | |
| GACCACAAGCCCGTATGAAA+AGG | - | chr3.1:86380578-86380597 | None:intergenic | 50.0% | |
| GACGAACATATGAGGAGCAG+CGG | - | chr3.1:86380737-86380756 | None:intergenic | 50.0% | |
| GCATGGCAATTGCAGCAATG+TGG | + | chr3.1:86380191-86380210 | MS.gene46903:intron | 50.0% | |
| GCTGCATTGCTTGCCAAGTT+AGG | + | chr3.1:86380544-86380563 | MS.gene46903:CDS | 50.0% | |
| GGGATGTTGAGCACCTAAAG+TGG | - | chr3.1:86380442-86380461 | None:intergenic | 50.0% | |
| GGTGACTCCGTTGTTCTCAT+GGG | + | chr3.1:86378972-86378991 | MS.gene46903:CDS | 50.0% | |
| GTTCTGCTTCTTCTCGGCTT+TGG | - | chr3.1:86378844-86378863 | None:intergenic | 50.0% | |
| GTTGTCAACGCTGACAACGT+TGG | + | chr3.1:86378912-86378931 | MS.gene46903:CDS | 50.0% | |
| TCAGTGAGGTCAAGAACCTC+AGG | - | chr3.1:86380634-86380653 | None:intergenic | 50.0% | |
| TCCTTAACCTTGTCTGCCTC+AGG | - | chr3.1:86380811-86380830 | None:intergenic | 50.0% | |
| TGAGGTTCTTGACCTCACTG+AGG | + | chr3.1:86380633-86380652 | MS.gene46903:CDS | 50.0% | |
| TGGTGACTCCGTTGTTCTCA+TGG | + | chr3.1:86378971-86378990 | MS.gene46903:CDS | 50.0% | |
| TGGTTCAGTGTTTAGCCCTG+AGG | + | chr3.1:86380615-86380634 | MS.gene46903:CDS | 50.0% | |
| TTGTTCCTCCAGGCAACACA+GGG | + | chr3.1:86380328-86380347 | MS.gene46903:CDS | 50.0% | |
| ! | TGCTTCTTCTCGGCTTTGGT+AGG | - | chr3.1:86378840-86378859 | None:intergenic | 50.0% |
| !! | CGTTGTCAGCGTTGACAACA+AGG | - | chr3.1:86378911-86378930 | None:intergenic | 50.0% |
| !! | GGCAAGTGTTGGGTAAGAGA+TGG | - | chr3.1:86380716-86380735 | None:intergenic | 50.0% |
| CCCTGAGGCAGACAAGGTTA+AGG | + | chr3.1:86380807-86380826 | MS.gene46903:CDS | 55.0% | |
| CTGCGTACGGGCGTTAGAAT+TGG | - | chr3.1:86379720-86379739 | None:intergenic | 55.0% | |
| GCAACCAAACCAACACGAGC+AGG | - | chr3.1:86380294-86380313 | None:intergenic | 55.0% | |
| GTTGTTCCTCCAGGCAACAC+AGG | + | chr3.1:86380327-86380346 | MS.gene46903:CDS | 55.0% | |
| ! | GCCCTTTTCATACGGGCTTG+TGG | + | chr3.1:86380573-86380592 | MS.gene46903:CDS | 55.0% |
| !! | AGCTCCTGCTCGTGTTGGTT+TGG | + | chr3.1:86380287-86380306 | MS.gene46903:CDS | 55.0% |
| !! | GCACCTCTAGTGAGGTACTG+TGG | + | chr3.1:86380089-86380108 | MS.gene46903:intron | 55.0% |
| AAGCGCGTGCTCACTGCGTA+CGG | - | chr3.1:86379733-86379752 | None:intergenic | 60.0% | |
| GAGGAGCAGCGGCAAGTGTT+GGG | - | chr3.1:86380726-86380745 | None:intergenic | 60.0% | |
| GTTGGAGCTCCTGCTCGTGT+TGG | + | chr3.1:86380282-86380301 | MS.gene46903:CDS | 60.0% | |
| TGAGGAGCAGCGGCAAGTGT+TGG | - | chr3.1:86380727-86380746 | None:intergenic | 60.0% | |
| AGCGCGTGCTCACTGCGTAC+GGG | - | chr3.1:86379732-86379751 | None:intergenic | 65.0% | |
| TCGAGCCCTGTGTTGCCTGG+AGG | - | chr3.1:86380336-86380355 | None:intergenic | 65.0% | |
| GGGTCGAGCCCTGTGTTGCC+TGG | - | chr3.1:86380339-86380358 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86378825 | 86380840 | 86378825 | ID=MS.gene46903 |
| chr3.1 | mRNA | 86378825 | 86380840 | 86378825 | ID=MS.gene46903.t1;Parent=MS.gene46903 |
| chr3.1 | exon | 86378825 | 86379082 | 86378825 | ID=MS.gene46903.t1.exon1;Parent=MS.gene46903.t1 |
| chr3.1 | CDS | 86378825 | 86379082 | 86378825 | ID=cds.MS.gene46903.t1;Parent=MS.gene46903.t1 |
| chr3.1 | exon | 86379915 | 86379983 | 86379915 | ID=MS.gene46903.t1.exon2;Parent=MS.gene46903.t1 |
| chr3.1 | CDS | 86379915 | 86379983 | 86379915 | ID=cds.MS.gene46903.t1;Parent=MS.gene46903.t1 |
| chr3.1 | exon | 86380282 | 86380380 | 86380282 | ID=MS.gene46903.t1.exon3;Parent=MS.gene46903.t1 |
| chr3.1 | CDS | 86380282 | 86380380 | 86380282 | ID=cds.MS.gene46903.t1;Parent=MS.gene46903.t1 |
| chr3.1 | exon | 86380448 | 86380840 | 86380448 | ID=MS.gene46903.t1.exon4;Parent=MS.gene46903.t1 |
| chr3.1 | CDS | 86380448 | 86380840 | 86380448 | ID=cds.MS.gene46903.t1;Parent=MS.gene46903.t1 |
| Gene Sequence |
| Protein sequence |
