AlfalfaGEDB | MS.gene055232

M. sativa cultivar XinJiangDaYe / MS.gene055232

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055232.t1	XP_003601657.1	93.3	120	8	0	1	120	1	120	9.40E-56	226.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055232.t1	Q9LIS2	60.7	117	44	2	1	116	1	116	7.4e-33	141.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055232.t1	G7JA80	93.3	120	8	0	1	120	1	120	6.8e-56	226.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049361	MS.gene055232	0.850751	1.39E-60	-1.69E-46
MS.gene050791	MS.gene055232	0.843077	1.75E-58	-1.69E-46
MS.gene051984	MS.gene055232	0.871991	4.48E-67	-1.69E-46
MS.gene053224	MS.gene055232	0.816776	4.65E-52	-1.69E-46
MS.gene055232	MS.gene072589	0.844589	6.88E-59	-1.69E-46
MS.gene055232	MS.gene072591	0.839189	1.84E-57	-1.69E-46
MS.gene055232	MS.gene08521	0.813662	2.28E-51	-1.69E-46
MS.gene055232	MS.gene22784	0.827761	1.31E-54	-1.69E-46
MS.gene055232	MS.gene25903	0.806345	8.61E-50	-1.69E-46
MS.gene055232	MS.gene46903	0.800742	1.25E-48	-1.69E-46
MS.gene055232	MS.gene46907	0.811192	7.92E-51	-1.69E-46
MS.gene055232	MS.gene55890	0.813044	3.12E-51	-1.69E-46
MS.gene055232	MS.gene59228	0.819096	1.39E-52	-1.69E-46
MS.gene055232	MS.gene59230	0.837961	3.82E-57	-1.69E-46
MS.gene055232	MS.gene59609	0.816718	4.79E-52	-1.69E-46
MS.gene055232	MS.gene70579	0.800036	1.74E-48	-1.69E-46
MS.gene055232	MS.gene72382	0.812506	4.10E-51	-1.69E-46
MS.gene055232	MS.gene79721	0.83063	2.64E-55	-1.69E-46
MS.gene055232	MS.gene96225	0.823225	1.55E-53	-1.69E-46
MS.gene055232	MS.gene98171	0.82719	1.79E-54	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene063816	MS.gene055232	PPI
MS.gene88428	MS.gene055232	PPI
MS.gene016534	MS.gene055232	PPI
MS.gene87189	MS.gene055232	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055232.t1	MTR_3g084040	93.443	122	8	0	1	122	1	122	3.23e-76	223
MS.gene055232.t1	MTR_3g084040	91.919	99	8	0	1	99	1	99	2.52e-64	191
MS.gene055232.t1	MTR_4g109540	52.893	121	50	3	1	114	1	121	2.18e-36	125
MS.gene055232.t1	MTR_7g013730	48.031	127	57	3	1	122	1	123	9.65e-35	120
MS.gene055232.t1	MTR_4g109540	49.612	129	50	4	1	114	1	129	1.36e-33	118
MS.gene055232.t1	MTR_7g013740	47.107	121	55	3	1	114	1	119	1.76e-33	114
MS.gene055232.t1	MTR_3g025880	45.038	131	59	4	1	122	1	127	5.16e-30	112
MS.gene055232.t1	MTR_3g014000	41.304	138	61	5	1	130	1	126	1.17e-26	97.1
MS.gene055232.t1	MTR_3g080130	50.588	85	41	1	36	119	36	120	2.32e-26	96.3
MS.gene055232.t1	MTR_7g105260	46.535	101	50	2	23	119	19	119	1.20e-24	92.0
MS.gene055232.t1	MTR_4g070080	51.316	76	36	1	37	111	7	82	7.69e-24	89.4
MS.gene055232.t1	MTR_4g070080	51.316	76	36	1	37	111	7	82	1.96e-23	89.4
MS.gene055232.t1	MTR_4g063560	43.820	89	49	1	26	113	23	111	2.31e-22	85.1
MS.gene055232.t1	MTR_4g070190	48.684	76	38	1	37	111	9	84	2.91e-22	86.7
MS.gene055232.t1	MTR_4g070140	50.000	76	37	1	37	111	9	84	1.11e-21	85.5
MS.gene055232.t1	MTR_3g075500	44.578	83	45	1	37	118	207	289	2.31e-19	81.6
MS.gene055232.t1	MTR_3g075500	39.362	94	53	2	29	121	102	192	1.33e-11	60.5
MS.gene055232.t1	MTR_7g099940	40.833	120	61	4	1	115	1	115	3.29e-19	78.2
MS.gene055232.t1	MTR_1g064230	49.367	79	39	1	37	114	197	275	9.16e-19	79.7
MS.gene055232.t1	MTR_4g081520	45.055	91	47	2	31	118	44	134	1.37e-18	76.6
MS.gene055232.t1	MTR_1g092860	36.364	110	66	2	18	126	174	280	1.21e-17	76.6
MS.gene055232.t1	MTR_4g104470	44.304	79	43	1	37	114	217	295	5.85e-17	75.1
MS.gene055232.t1	MTR_4g104470	43.529	85	45	2	37	120	123	205	1.87e-12	62.8
MS.gene055232.t1	MTR_1g045510	45.679	81	43	1	37	116	205	285	2.05e-16	73.6
MS.gene055232.t1	MTR_1g045510	35.294	85	54	1	36	119	113	197	2.52e-12	62.4
MS.gene055232.t1	MTR_3g055990	46.154	78	41	1	37	114	7	83	2.74e-16	73.9
MS.gene055232.t1	MTR_3g055990	46.154	78	41	1	37	114	7	83	2.86e-16	73.9
MS.gene055232.t1	MTR_6g004810	33.945	109	63	2	31	130	128	236	9.60e-16	72.4
MS.gene055232.t1	MTR_3g065190	42.697	89	49	2	36	122	112	200	8.54e-15	69.7
MS.gene055232.t1	MTR_4g074930	35.537	121	69	3	13	129	345	460	1.03e-14	69.7
MS.gene055232.t1	MTR_4g074930	35.537	121	69	3	13	129	357	472	1.04e-14	69.7
MS.gene055232.t1	MTR_4g074930	35.537	121	69	3	13	129	310	425	1.16e-14	69.7
MS.gene055232.t1	MTR_4g074930	35.537	121	69	3	13	129	322	437	1.29e-14	69.3
MS.gene055232.t1	MTR_1g097280	37.975	79	47	2	38	114	31	109	1.39e-14	69.3
MS.gene055232.t1	MTR_3g116130	35.714	84	54	0	36	119	29	112	1.45e-14	68.6
MS.gene055232.t1	MTR_1g073690	36.471	85	54	0	32	116	108	192	1.57e-14	68.9
MS.gene055232.t1	MTR_1g073690	36.709	79	49	1	37	115	7	84	1.15e-11	60.8
MS.gene055232.t1	MTR_3g116130	35.714	84	54	0	36	119	29	112	1.93e-14	68.6
MS.gene055232.t1	MTR_3g029580	35.106	94	57	3	18	108	13	105	3.05e-14	65.1
MS.gene055232.t1	MTR_7g117495	40.580	69	41	0	36	104	18	86	3.20e-14	67.0
MS.gene055232.t1	MTR_7g117495	40.580	69	41	0	36	104	18	86	3.48e-14	67.0
MS.gene055232.t1	MTR_6g477870	35.000	80	51	1	36	114	95	174	3.59e-14	65.9
MS.gene055232.t1	MTR_5g097580	41.250	80	46	1	35	114	5	83	3.85e-14	68.2
MS.gene055232.t1	MTR_5g097580	41.250	80	46	1	35	114	5	83	3.90e-14	68.2
MS.gene055232.t1	MTR_4g124940	45.333	75	40	1	38	111	133	207	4.75e-14	67.8
MS.gene055232.t1	MTR_4g035310	35.484	93	56	1	36	124	16	108	5.01e-14	67.0
MS.gene055232.t1	MTR_4g035310	37.662	77	48	0	36	112	16	92	5.29e-14	66.6
MS.gene055232.t1	MTR_7g106440	40.230	87	51	1	34	119	210	296	5.34e-14	67.0
MS.gene055232.t1	MTR_8g022050	45.122	82	43	2	38	118	149	229	5.93e-14	67.4
MS.gene055232.t1	MTR_8g024520	42.029	69	40	0	36	104	25	93	6.08e-14	66.6
MS.gene055232.t1	MTR_8g024520	42.029	69	40	0	36	104	25	93	6.18e-14	66.6
MS.gene055232.t1	MTR_2g026180	40.244	82	48	1	33	114	1	81	2.32e-13	65.9
MS.gene055232.t1	MTR_2g026180	31.250	96	65	1	33	128	103	197	2.75e-11	59.7
MS.gene055232.t1	MTR_3g092490	40.260	77	44	1	36	110	26	102	2.71e-13	63.5
MS.gene055232.t1	MTR_4g081510	32.759	116	72	4	2	114	11	123	2.98e-13	63.5
MS.gene055232.t1	MTR_1g036430	41.176	85	49	1	35	119	161	244	3.08e-13	65.5
MS.gene055232.t1	MTR_7g107580	38.824	85	51	1	36	119	349	433	3.30e-13	65.5
MS.gene055232.t1	MTR_7g107580	38.824	85	51	1	36	119	348	432	3.50e-13	65.1
MS.gene055232.t1	MTR_2g096560	36.250	80	50	1	36	114	7	86	3.60e-13	61.2
MS.gene055232.t1	MTR_3g103420	34.118	85	56	0	31	115	112	196	4.50e-13	64.7
MS.gene055232.t1	MTR_3g103420	38.636	88	53	1	27	114	1	87	9.02e-12	61.2
MS.gene055232.t1	MTR_3g092490	40.260	77	44	1	36	110	26	102	6.29e-13	63.5
MS.gene055232.t1	MTR_3g092490	40.260	77	44	1	36	110	26	102	6.30e-13	63.5
MS.gene055232.t1	MTR_5g064120	37.681	69	43	0	36	104	16	84	8.49e-13	63.5
MS.gene055232.t1	MTR_1g019150	36.000	100	58	2	19	112	10	109	1.17e-12	63.9
MS.gene055232.t1	MTR_4g117350	37.037	81	50	1	34	113	69	149	1.68e-12	61.2
MS.gene055232.t1	MTR_5g044970	36.250	80	50	1	33	111	7	86	1.72e-12	61.2
MS.gene055232.t1	MTR_3g109090	42.683	82	45	2	38	118	131	211	2.37e-12	62.8
MS.gene055232.t1	MTR_3g109090	42.683	82	45	2	38	118	147	227	2.59e-12	62.8
MS.gene055232.t1	MTR_3g075500	40.625	64	37	1	37	99	207	270	2.69e-12	62.0
MS.gene055232.t1	MTR_3g075500	39.362	94	53	2	29	121	102	192	1.01e-11	60.5
MS.gene055232.t1	MTR_8g463890	43.056	72	41	0	33	104	70	141	2.89e-12	62.8
MS.gene055232.t1	MTR_5g071540	30.392	102	59	2	9	109	23	113	3.24e-12	60.1
MS.gene055232.t1	MTR_3g029580	34.118	85	52	3	18	99	13	96	4.17e-12	59.7
MS.gene055232.t1	MTR_1g020080	35.870	92	57	2	38	127	192	283	8.32e-12	60.8
MS.gene055232.t1	MTR_1g056520	38.272	81	49	1	34	113	205	285	8.99e-12	60.8
MS.gene055232.t1	MTR_1g020080	36.364	88	54	2	38	123	192	279	1.20e-11	60.8
MS.gene055232.t1	MTR_4g036415	39.024	82	49	1	31	111	446	527	2.58e-11	60.1
MS.gene055232.t1	MTR_2g026180	32.609	92	61	1	37	128	37	127	3.19e-11	59.7
MS.gene055232.t1	MTR_2g097960	39.759	83	48	2	38	118	110	192	3.45e-11	59.7
MS.gene055232.t1	MTR_4g088010	30.769	91	61	1	33	123	160	248	3.80e-11	59.3
MS.gene055232.t1	MTR_4g088010	39.189	74	45	0	31	104	71	144	9.50e-11	58.2
MS.gene055232.t1	MTR_4g085540	37.975	79	48	1	35	112	33	111	4.67e-11	59.3
MS.gene055232.t1	MTR_5g017280	36.145	83	52	1	33	115	1	82	8.64e-11	58.2
MS.gene055232.t1	MTR_5g017280	36.145	83	52	1	33	115	1	82	9.09e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055232.t1	AT3G23830	60.331	121	45	3	1	120	1	119	3.19e-46	146
MS.gene055232.t1	AT3G23830	60.331	121	45	3	1	120	1	119	3.19e-46	146
MS.gene055232.t1	AT4G13850	61.157	121	44	3	1	120	1	119	9.50e-45	143
MS.gene055232.t1	AT4G13850	61.157	121	44	3	1	120	1	119	1.25e-44	143
MS.gene055232.t1	AT4G13850	61.538	117	43	2	1	116	1	116	1.44e-44	142
MS.gene055232.t1	AT4G13850	61.157	121	44	3	1	120	1	119	1.45e-44	143
MS.gene055232.t1	AT5G61030	56.303	119	47	2	1	114	1	119	4.46e-40	136
MS.gene055232.t1	AT5G61030	56.303	119	47	2	1	114	1	119	4.46e-40	136
MS.gene055232.t1	AT1G74230	53.982	113	50	1	1	113	1	111	2.47e-37	128
MS.gene055232.t1	AT5G47320	56.140	114	44	3	1	113	1	109	1.14e-34	119
MS.gene055232.t1	AT3G08000	47.059	119	55	2	9	119	7	125	2.48e-28	101
MS.gene055232.t1	AT5G06210	50.000	96	45	2	31	125	29	122	2.08e-23	89.0
MS.gene055232.t1	AT5G59865	47.191	89	46	1	34	121	24	112	2.25e-21	82.8
MS.gene055232.t1	AT2G21660	48.684	76	38	1	37	111	9	84	2.54e-21	84.0
MS.gene055232.t1	AT2G21660	48.684	76	38	1	37	111	9	84	3.77e-21	84.0
MS.gene055232.t1	AT2G37220	53.165	79	36	1	37	114	205	283	5.08e-21	85.9
MS.gene055232.t1	AT2G37220	41.860	86	43	2	37	121	92	171	1.79e-12	62.8
MS.gene055232.t1	AT3G53460	50.602	83	40	1	37	118	258	340	1.26e-20	85.5
MS.gene055232.t1	AT3G53460	43.023	86	42	2	37	121	100	179	3.56e-11	59.3
MS.gene055232.t1	AT3G53460	50.602	83	40	1	37	118	258	340	1.26e-20	85.5
MS.gene055232.t1	AT3G53460	43.023	86	42	2	37	121	100	179	3.56e-11	59.3
MS.gene055232.t1	AT3G53460	50.602	83	40	1	37	118	258	340	1.26e-20	85.5
MS.gene055232.t1	AT3G53460	43.023	86	42	2	37	121	100	179	3.56e-11	59.3
MS.gene055232.t1	AT3G53460	50.602	83	40	1	37	118	279	361	1.51e-20	85.5
MS.gene055232.t1	AT4G39260	40.000	95	47	2	37	130	7	92	2.19e-20	79.7
MS.gene055232.t1	AT1G18630	40.708	113	63	3	1	112	4	113	5.83e-20	80.5
MS.gene055232.t1	AT4G24770	47.126	87	42	2	37	122	245	328	7.33e-19	80.9
MS.gene055232.t1	AT4G24770	37.500	104	61	2	19	121	133	233	2.24e-12	62.8
MS.gene055232.t1	AT4G24770	47.126	87	42	2	37	122	245	328	7.33e-19	80.9
MS.gene055232.t1	AT4G24770	37.500	104	61	2	19	121	133	233	2.24e-12	62.8
MS.gene055232.t1	AT3G26420	45.882	85	45	1	37	120	8	92	1.30e-18	79.0
MS.gene055232.t1	AT5G50250	44.304	79	43	1	37	114	208	286	6.11e-18	77.8
MS.gene055232.t1	AT5G50250	43.678	87	45	2	36	121	113	196	8.28e-13	63.9
MS.gene055232.t1	AT2G37510	48.052	77	39	1	33	108	31	107	6.67e-18	74.7
MS.gene055232.t1	AT4G39260	40.789	76	44	1	37	111	7	82	2.49e-17	72.8
MS.gene055232.t1	AT4G39260	40.789	76	44	1	37	111	7	82	6.60e-17	72.8
MS.gene055232.t1	AT1G60000	48.193	83	42	1	34	115	175	257	7.30e-17	74.3
MS.gene055232.t1	AT4G13860	46.667	75	39	1	35	108	2	76	7.33e-17	70.5
MS.gene055232.t1	AT3G46020	42.500	80	45	1	35	113	6	85	1.35e-16	70.1
MS.gene055232.t1	AT5G54580	42.683	82	46	1	35	115	55	136	5.97e-16	70.1
MS.gene055232.t1	AT3G20930	36.842	95	59	1	33	126	279	373	9.67e-16	72.4
MS.gene055232.t1	AT1G76460	38.462	91	53	1	36	126	24	111	1.12e-15	71.6
MS.gene055232.t1	AT3G52380	41.573	89	51	1	34	121	217	305	2.37e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.46e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.46e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.46e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.46e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.46e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.54e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.54e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.54e-15	71.2
MS.gene055232.t1	AT5G55550	43.038	79	44	1	37	115	7	84	2.54e-15	71.2
MS.gene055232.t1	AT5G55550	45.714	70	37	1	37	106	7	75	7.43e-15	70.1
MS.gene055232.t1	AT5G55550	45.714	70	37	1	37	106	7	75	7.61e-15	70.1
MS.gene055232.t1	AT2G22100	37.778	90	56	0	31	120	158	247	9.56e-15	69.7
MS.gene055232.t1	AT1G60650	38.000	100	57	2	35	129	11	110	1.10e-14	68.9
MS.gene055232.t1	AT1G60650	38.000	100	57	2	35	129	11	110	1.10e-14	68.9
MS.gene055232.t1	AT1G54080	44.000	75	41	1	38	111	150	224	1.65e-14	68.9
MS.gene055232.t1	AT2G46780	37.234	94	54	1	36	124	22	115	1.83e-14	68.6
MS.gene055232.t1	AT2G46780	37.234	94	54	1	36	124	22	115	1.83e-14	68.6
MS.gene055232.t1	AT1G33470	42.029	69	40	0	36	104	7	75	1.87e-14	67.8
MS.gene055232.t1	AT3G07810	41.026	78	45	1	37	114	7	83	1.99e-14	68.9
MS.gene055232.t1	AT1G33470	42.029	69	40	0	36	104	7	75	1.99e-14	67.8
MS.gene055232.t1	AT1G33470	42.029	69	40	0	36	104	7	75	2.00e-14	67.8
MS.gene055232.t1	AT3G07810	41.026	78	45	1	37	114	7	83	2.05e-14	68.9
MS.gene055232.t1	AT1G48920	39.000	100	56	1	35	129	296	395	2.05e-14	68.9
MS.gene055232.t1	AT1G22910	38.961	77	47	0	36	112	13	89	2.09e-14	67.8
MS.gene055232.t1	AT1G22910	38.961	77	47	0	36	112	13	89	2.34e-14	67.4
MS.gene055232.t1	AT3G14100	44.000	75	41	1	38	111	146	220	2.44e-14	68.6
MS.gene055232.t1	AT4G26650	42.308	78	44	1	37	114	13	89	2.81e-14	68.6
MS.gene055232.t1	AT4G26650	31.034	87	60	0	35	121	118	204	2.07e-11	60.1
MS.gene055232.t1	AT5G04280	39.744	78	46	1	36	112	7	84	2.87e-14	67.8
MS.gene055232.t1	AT4G26650	42.308	78	44	1	37	114	16	92	2.92e-14	68.6
MS.gene055232.t1	AT4G26650	31.034	87	60	0	35	121	121	207	2.22e-11	60.1
MS.gene055232.t1	AT2G18510	41.573	89	50	2	36	122	112	200	3.16e-14	68.2
MS.gene055232.t1	AT1G20880	38.961	77	47	0	36	112	24	100	4.42e-14	67.0
MS.gene055232.t1	AT1G20880	38.961	77	47	0	36	112	24	100	4.42e-14	67.0
MS.gene055232.t1	AT1G20880	38.961	77	47	0	36	112	24	100	4.42e-14	67.0
MS.gene055232.t1	AT1G22910	38.961	77	47	0	36	112	13	89	5.37e-14	67.4
MS.gene055232.t1	AT1G22330	36.559	93	56	1	36	128	17	106	5.77e-14	67.0
MS.gene055232.t1	AT5G47620	39.759	83	49	1	32	114	2	83	6.68e-14	67.4
MS.gene055232.t1	AT5G47620	33.766	77	51	0	35	111	105	181	3.13e-11	59.7
MS.gene055232.t1	AT5G47620	39.759	83	49	1	32	114	2	83	6.68e-14	67.4
MS.gene055232.t1	AT5G47620	33.766	77	51	0	35	111	105	181	3.13e-11	59.7
MS.gene055232.t1	AT5G47620	39.759	83	49	1	32	114	2	83	6.68e-14	67.4
MS.gene055232.t1	AT5G47620	33.766	77	51	0	35	111	105	181	3.13e-11	59.7
MS.gene055232.t1	AT4G13860	53.448	58	26	1	52	108	2	59	6.73e-14	62.4
MS.gene055232.t1	AT1G78260	36.364	77	49	0	36	112	17	93	9.57e-14	66.2
MS.gene055232.t1	AT5G47620	50.847	59	29	0	32	90	2	60	1.22e-13	66.6
MS.gene055232.t1	AT5G47620	33.766	77	51	0	35	111	127	203	3.46e-11	59.7
MS.gene055232.t1	AT1G78260	38.571	70	43	0	36	105	17	86	1.43e-13	65.9
MS.gene055232.t1	AT4G39260	38.983	59	36	0	37	95	7	65	1.53e-13	62.4
MS.gene055232.t1	AT2G27330	31.579	95	64	1	35	128	20	114	2.30e-13	62.4
MS.gene055232.t1	AT3G13224	36.667	90	56	1	28	116	92	181	2.47e-13	65.5
MS.gene055232.t1	AT3G13224	45.588	68	37	0	28	95	101	168	2.91e-13	64.3
MS.gene055232.t1	AT3G13224	36.667	90	56	1	28	116	101	190	2.97e-13	65.5
MS.gene055232.t1	AT1G17640	34.694	98	61	2	34	129	155	251	3.30e-13	65.1
MS.gene055232.t1	AT1G17640	34.694	98	61	2	34	129	155	251	3.30e-13	65.1
MS.gene055232.t1	AT1G17640	34.694	98	61	2	34	129	155	251	3.30e-13	65.1
MS.gene055232.t1	AT3G54770	36.364	77	49	0	36	112	17	93	3.55e-13	64.3
MS.gene055232.t1	AT3G54770	36.364	77	49	0	36	112	17	93	3.88e-13	64.3
MS.gene055232.t1	AT2G21690	39.437	71	42	1	39	108	10	80	5.54e-13	61.2
MS.gene055232.t1	AT1G17370	44.000	75	41	1	38	111	141	215	8.65e-13	64.3
MS.gene055232.t1	AT1G17370	44.000	75	41	1	38	111	141	215	8.76e-13	64.3
MS.gene055232.t1	AT1G71800	35.443	79	49	2	38	114	11	89	1.00e-12	63.9
MS.gene055232.t1	AT4G14300	40.506	79	46	1	37	115	7	84	1.04e-12	63.9
MS.gene055232.t1	AT4G14300	34.146	82	54	0	35	116	109	190	2.58e-12	62.8
MS.gene055232.t1	AT4G14300	40.506	79	46	1	37	115	7	84	1.04e-12	63.9
MS.gene055232.t1	AT4G14300	34.146	82	54	0	35	116	109	190	2.58e-12	62.8
MS.gene055232.t1	AT1G01080	37.975	79	49	0	30	108	206	284	1.53e-12	63.2
MS.gene055232.t1	AT1G49760	43.590	78	43	1	35	111	44	121	1.53e-12	63.5
MS.gene055232.t1	AT1G49760	43.590	78	43	1	35	111	44	121	1.53e-12	63.5
MS.gene055232.t1	AT1G01080	37.975	79	49	0	30	108	207	285	1.54e-12	63.2
MS.gene055232.t1	AT1G54080	41.772	79	41	2	38	111	150	228	1.96e-12	63.2
MS.gene055232.t1	AT4G00830	36.782	87	52	2	24	109	106	190	1.99e-12	63.2
MS.gene055232.t1	AT4G00830	36.782	87	52	2	24	109	106	190	1.99e-12	63.2
MS.gene055232.t1	AT2G33410	37.349	83	51	1	37	119	7	88	2.01e-12	63.2
MS.gene055232.t1	AT2G33410	35.294	85	55	0	32	116	106	190	3.24e-12	62.4
MS.gene055232.t1	AT3G18610	39.535	86	49	2	35	120	383	465	2.16e-12	63.2
MS.gene055232.t1	AT5G11412	34.211	76	50	0	36	111	52	127	2.40e-12	60.8
MS.gene055232.t1	AT2G37510	36.275	102	39	2	33	108	31	132	2.40e-12	60.8
MS.gene055232.t1	AT5G53720	36.364	77	49	0	35	111	8	84	3.26e-12	58.9
MS.gene055232.t1	AT2G19380	33.333	84	56	0	31	114	403	486	3.32e-12	62.4
MS.gene055232.t1	AT3G18610	39.535	86	49	2	35	120	353	435	3.65e-12	62.4
MS.gene055232.t1	AT1G73530	33.333	81	53	1	35	114	76	156	4.81e-12	60.5
MS.gene055232.t1	AT4G03110	36.471	85	53	1	36	119	349	433	4.86e-12	62.0
MS.gene055232.t1	AT3G18610	39.535	86	49	2	35	120	323	405	4.99e-12	62.0
MS.gene055232.t1	AT4G20030	33.333	90	56	2	24	112	31	117	5.97e-12	59.7
MS.gene055232.t1	AT5G53680	34.615	78	49	1	36	111	13	90	7.04e-12	59.7
MS.gene055232.t1	AT1G03457	34.177	79	51	1	36	113	225	303	9.67e-12	60.8
MS.gene055232.t1	AT1G47490	37.234	94	57	2	38	129	199	292	1.20e-11	60.5
MS.gene055232.t1	AT1G47490	37.234	94	57	2	38	129	199	292	2.07e-11	60.1
MS.gene055232.t1	AT3G15010	32.673	101	68	0	4	104	43	143	2.19e-11	60.1
MS.gene055232.t1	AT3G15010	32.673	101	68	0	4	104	43	143	2.19e-11	60.1
MS.gene055232.t1	AT5G51300	36.585	82	51	1	31	111	475	556	2.35e-11	60.1
MS.gene055232.t1	AT5G51300	36.585	82	51	1	31	111	475	556	2.35e-11	60.1
MS.gene055232.t1	AT5G51300	36.585	82	51	1	31	111	475	556	2.35e-11	60.1
MS.gene055232.t1	AT5G47620	33.766	77	51	0	35	111	45	121	2.50e-11	60.1
MS.gene055232.t1	AT5G54900	39.506	81	47	2	38	116	156	236	2.70e-11	59.7
MS.gene055232.t1	AT1G13690	37.333	75	46	1	38	111	15	89	2.93e-11	58.2
MS.gene055232.t1	AT5G40490	32.927	82	54	1	35	115	112	193	3.14e-11	59.7
MS.gene055232.t1	AT1G47500	36.170	94	58	2	38	129	201	294	5.35e-11	58.9
MS.gene055232.t1	AT4G00830	36.250	80	50	1	36	114	116	195	5.43e-11	58.9
MS.gene055232.t1	AT4G00830	36.250	80	50	1	36	114	116	195	5.43e-11	58.9
MS.gene055232.t1	AT4G00830	36.250	80	50	1	36	114	116	195	5.43e-11	58.9
MS.gene055232.t1	AT3G10400	37.975	79	48	1	36	113	57	135	6.07e-11	58.5
MS.gene055232.t1	AT4G34110	37.895	95	58	1	19	112	19	113	6.32e-11	58.9
MS.gene055232.t1	AT1G47500	36.170	94	58	2	38	129	201	294	6.81e-11	58.9

Find 42 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGGATGGACAGGATTTAAA+TGG	0.332884	7.4:-41026239	MS.gene055232:CDS
ACTGGAAGATCAAGGGGATT+TGG	0.334462	7.4:-41026308	MS.gene055232:CDS
ATGGGTTTCTGTAACAAGAT+TGG	0.366720	7.4:-41026524	MS.gene055232:CDS
TGCAACTTCAGCACTCTCTA+TGG	0.384662	7.4:-41026258	MS.gene055232:CDS
AAACAGGAGCTTGAGTGCTC+TGG	0.387762	7.4:+41026477	None:intergenic
CATAAGACACACGAATGTTT+CGG	0.398236	7.4:+41026216	None:intergenic
GTGGCTACGGCGGCGGTGGT+TGG	0.436194	7.4:-41026157	MS.gene055232:CDS
TGTTGATGATCAGTCTCTTA+AGG	0.437494	7.4:-41026387	MS.gene055232:CDS
ACCGCCGCCGTAGCCACCTC+CGG	0.442200	7.4:+41026163	None:intergenic
CCCGGAGGTGGCTACGGCGG+CGG	0.446676	7.4:-41026164	MS.gene055232:CDS
GGAGGTGGCTACGGCGGCGG+TGG	0.457362	7.4:-41026161	MS.gene055232:CDS
TAGTTAAGCATGGATGAAAC+AGG	0.461015	7.4:+41026461	None:intergenic
AGCACTCTCTATGGATGGAC+AGG	0.475981	7.4:-41026249	MS.gene055232:CDS
GGTGGACCTCGTCCCGGAGG+TGG	0.479282	7.4:-41026176	MS.gene055232:CDS
CCTCGTCCCGGAGGTGGCTA+CGG	0.490162	7.4:-41026170	MS.gene055232:CDS
GATCATCAACATGGTAAGAA+AGG	0.505312	7.4:+41026399	None:intergenic
CCGTAGCCACCTCCGGGACG+AGG	0.515742	7.4:+41026170	None:intergenic
ATAGAGACACTGGAAGATCA+AGG	0.517492	7.4:-41026316	MS.gene055232:CDS
AACAGGAGCTTGAGTGCTCT+GGG	0.530013	7.4:+41026478	None:intergenic
CAGGCTGGTGGACCTCGTCC+CGG	0.532193	7.4:-41026182	MS.gene055232:CDS
AAGGATGCATTTACAACCTA+CGG	0.532917	7.4:-41026368	MS.gene055232:CDS
GTCTTATGCAAATGATAGAC+AGG	0.539775	7.4:-41026201	MS.gene055232:CDS
GGGTACCACCTTGCCTCAAG+AGG	0.543148	7.4:+41026498	None:intergenic
CCGCCGCCGTAGCCACCTCC+GGG	0.558233	7.4:+41026164	None:intergenic
TATGCAAATGATAGACAGGC+TGG	0.561593	7.4:-41026197	MS.gene055232:CDS
GTTATCACTGATAGAGACAC+TGG	0.581409	7.4:-41026326	MS.gene055232:CDS
ACTTCAGCACTCTCTATGGA+TGG	0.581897	7.4:-41026254	MS.gene055232:CDS
TGCCTCAACCACTTCTCCGT+AGG	0.589946	7.4:+41026352	None:intergenic
TAGAGACACTGGAAGATCAA+GGG	0.594765	7.4:-41026315	MS.gene055232:CDS
AGAGACACTGGAAGATCAAG+GGG	0.604078	7.4:-41026314	MS.gene055232:CDS
ATTTACAACCTACGGAGAAG+TGG	0.607456	7.4:-41026360	MS.gene055232:CDS
AACCTACGGAGAAGTGGTTG+AGG	0.621999	7.4:-41026354	MS.gene055232:CDS
GTGGCGCAAGTAGTTAAGCA+TGG	0.622132	7.4:+41026451	None:intergenic
ATTGGAAACCTCTTGAGGCA+AGG	0.631105	7.4:-41026506	MS.gene055232:CDS
CGTCCCGGAGGTGGCTACGG+CGG	0.635478	7.4:-41026167	MS.gene055232:CDS
TGAAGTTGCAGACTCTTGAG+TGG	0.654691	7.4:+41026271	None:intergenic
ACAAGATTGGAAACCTCTTG+AGG	0.658250	7.4:-41026511	MS.gene055232:CDS
GCAAATGATAGACAGGCTGG+TGG	0.676461	7.4:-41026194	MS.gene055232:CDS
GCTGGTGGACCTCGTCCCGG+AGG	0.683775	7.4:-41026179	MS.gene055232:CDS
GGAAACCTCTTGAGGCAAGG+TGG	0.688707	7.4:-41026503	MS.gene055232:CDS
TAAGAGACTGATCATCAACA+TGG	0.702631	7.4:+41026390	None:intergenic
AAAGCTTGCTTGAAGACATG+TGG	0.718559	7.4:+41026432	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAGGATGCATTTACAACCTA+CGG	-	chr7.4:41026310-41026329	MS.gene055232:CDS	35.0%
	ATGGATGGACAGGATTTAAA+TGG	-	chr7.4:41026439-41026458	MS.gene055232:CDS	35.0%
	ATGGGTTTCTGTAACAAGAT+TGG	-	chr7.4:41026154-41026173	MS.gene055232:CDS	35.0%
	CATAAGACACACGAATGTTT+CGG	+	chr7.4:41026465-41026484	None:intergenic	35.0%
	GATCATCAACATGGTAAGAA+AGG	+	chr7.4:41026282-41026301	None:intergenic	35.0%
	GTCTTATGCAAATGATAGAC+AGG	-	chr7.4:41026477-41026496	MS.gene055232:CDS	35.0%
	TAAGAGACTGATCATCAACA+TGG	+	chr7.4:41026291-41026310	None:intergenic	35.0%
	TAGTTAAGCATGGATGAAAC+AGG	+	chr7.4:41026220-41026239	None:intergenic	35.0%
!	TCTTCAAGCAAGCTTTTCAT+TGG	-	chr7.4:41026253-41026272	MS.gene055232:CDS	35.0%
!!	TGTTGATGATCAGTCTCTTA+AGG	-	chr7.4:41026291-41026310	MS.gene055232:CDS	35.0%
	ACAAGATTGGAAACCTCTTG+AGG	-	chr7.4:41026167-41026186	MS.gene055232:CDS	40.0%
	ATAGAGACACTGGAAGATCA+AGG	-	chr7.4:41026362-41026381	MS.gene055232:CDS	40.0%
	ATTTACAACCTACGGAGAAG+TGG	-	chr7.4:41026318-41026337	MS.gene055232:CDS	40.0%
	GTTATCACTGATAGAGACAC+TGG	-	chr7.4:41026352-41026371	MS.gene055232:CDS	40.0%
	TAGAGACACTGGAAGATCAA+GGG	-	chr7.4:41026363-41026382	MS.gene055232:CDS	40.0%
	TATGCAAATGATAGACAGGC+TGG	-	chr7.4:41026481-41026500	MS.gene055232:CDS	40.0%
!	AAAGCTTGCTTGAAGACATG+TGG	+	chr7.4:41026249-41026268	None:intergenic	40.0%
!	TCAAGCAAGCTTTTCATTGG+AGG	-	chr7.4:41026256-41026275	MS.gene055232:CDS	40.0%
	ACTGGAAGATCAAGGGGATT+TGG	-	chr7.4:41026370-41026389	MS.gene055232:CDS	45.0%
	ACTTCAGCACTCTCTATGGA+TGG	-	chr7.4:41026424-41026443	MS.gene055232:CDS	45.0%
	AGAGACACTGGAAGATCAAG+GGG	-	chr7.4:41026364-41026383	MS.gene055232:CDS	45.0%
	ATTGGAAACCTCTTGAGGCA+AGG	-	chr7.4:41026172-41026191	MS.gene055232:CDS	45.0%
	TGAAGTTGCAGACTCTTGAG+TGG	+	chr7.4:41026410-41026429	None:intergenic	45.0%
	TGCAACTTCAGCACTCTCTA+TGG	-	chr7.4:41026420-41026439	MS.gene055232:CDS	45.0%
	AAACAGGAGCTTGAGTGCTC+TGG	+	chr7.4:41026204-41026223	None:intergenic	50.0%
	AACAGGAGCTTGAGTGCTCT+GGG	+	chr7.4:41026203-41026222	None:intergenic	50.0%
	AACCTACGGAGAAGTGGTTG+AGG	-	chr7.4:41026324-41026343	MS.gene055232:CDS	50.0%
	AGCACTCTCTATGGATGGAC+AGG	-	chr7.4:41026429-41026448	MS.gene055232:CDS	50.0%
	GCAAATGATAGACAGGCTGG+TGG	-	chr7.4:41026484-41026503	MS.gene055232:CDS	50.0%
	GTGGCGCAAGTAGTTAAGCA+TGG	+	chr7.4:41026230-41026249	None:intergenic	50.0%
	GGAAACCTCTTGAGGCAAGG+TGG	-	chr7.4:41026175-41026194	MS.gene055232:CDS	55.0%
	TGCCTCAACCACTTCTCCGT+AGG	+	chr7.4:41026329-41026348	None:intergenic	55.0%
	GGGTACCACCTTGCCTCAAG+AGG	+	chr7.4:41026183-41026202	None:intergenic	60.0%
	CCTCGTCCCGGAGGTGGCTA+CGG	-	chr7.4:41026508-41026527	MS.gene055232:CDS	70.0%
!	CAGGCTGGTGGACCTCGTCC+CGG	-	chr7.4:41026496-41026515	MS.gene055232:CDS	70.0%
	ACCGCCGCCGTAGCCACCTC+CGG	+	chr7.4:41026518-41026537	None:intergenic	75.0%
	CCGTAGCCACCTCCGGGACG+AGG	+	chr7.4:41026511-41026530	None:intergenic	75.0%
	CGTCCCGGAGGTGGCTACGG+CGG	-	chr7.4:41026511-41026530	MS.gene055232:CDS	75.0%
	GGTGGACCTCGTCCCGGAGG+TGG	-	chr7.4:41026502-41026521	MS.gene055232:CDS	75.0%
	GTGGCTACGGCGGCGGTGGT+TGG	-	chr7.4:41026521-41026540	MS.gene055232:CDS	75.0%
!	GCTGGTGGACCTCGTCCCGG+AGG	-	chr7.4:41026499-41026518	MS.gene055232:CDS	75.0%
!	CCCGGAGGTGGCTACGGCGG+CGG	-	chr7.4:41026514-41026533	MS.gene055232:CDS	80.0%
!	CCGCCGCCGTAGCCACCTCC+GGG	+	chr7.4:41026517-41026536	None:intergenic	80.0%
!	GGAGGTGGCTACGGCGGCGG+TGG	-	chr7.4:41026517-41026536	MS.gene055232:CDS	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	41026154	41026546	41026154	ID=MS.gene055232
chr7.4	mRNA	41026154	41026546	41026154	ID=MS.gene055232.t1;Parent=MS.gene055232
chr7.4	exon	41026154	41026546	41026154	ID=MS.gene055232.t1.exon1;Parent=MS.gene055232.t1
chr7.4	CDS	41026154	41026546	41026154	ID=cds.MS.gene055232.t1;Parent=MS.gene055232.t1

Gene Sequence

>MS.gene055232

ATGGGTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGGTACCCAGAGCACTCAAGCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGATCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCACTCAAGAGTCTGCAACTTCAGCACTCTCTATGGATGGACAGGATTTAAATGGCCGAAACATTCGTGTGTCTTATGCAAATGATAGACAGGCTGGTGGACCTCGTCCCGGAGGTGGCTACGGCGGCGGTGGTTGGTGA

Protein sequence

>MS.gene055232.t1

MGFCNKIGNLLRQGGTQSTQAPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTTQESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGW