AlfalfaGEDB | MS.gene47029

M. sativa cultivar XinJiangDaYe / MS.gene47029

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF03822.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47029.t1	XP_003617145.1	100	415	0	0	1	415	1	415	2.50E-238	834.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47029.t1	Q2V452	83.9	411	66	0	5	415	6	416	8.9e-205	714.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47029.t1	G7K7Q8	100.0	415	0	0	1	415	1	415	1.8e-238	834.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007011	MS.gene47029	PPI
MS.gene029577	MS.gene47029	PPI
MS.gene060495	MS.gene47029	PPI
MS.gene060496	MS.gene47029	PPI
MS.gene065678	MS.gene47029	PPI
MS.gene067322	MS.gene47029	PPI
MS.gene08994	MS.gene47029	PPI
MS.gene25646	MS.gene47029	PPI
MS.gene25647	MS.gene47029	PPI
MS.gene25680	MS.gene47029	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47029.t1	MTR_5g088350	99.523	419	0	1	1	419	1	417	0.0	863
MS.gene47029.t1	MTR_5g088350	99.239	394	3	0	1	394	1	394	0.0	811
MS.gene47029.t1	MTR_5g088350	100.000	333	0	0	1	333	1	333	0.0	695
MS.gene47029.t1	MTR_8g024600	68.571	420	126	4	4	422	8	422	0.0	600
MS.gene47029.t1	MTR_2g049790	67.542	419	127	5	7	419	17	432	0.0	592
MS.gene47029.t1	MTR_8g024590	68.106	417	126	5	7	422	11	421	0.0	582
MS.gene47029.t1	MTR_4g114670	59.427	419	162	4	5	419	3	417	0.0	535
MS.gene47029.t1	MTR_5g067150	57.957	421	169	4	6	422	2	418	0.0	511
MS.gene47029.t1	MTR_8g024600	70.349	344	96	4	80	422	1	339	2.59e-177	499
MS.gene47029.t1	MTR_4g114670	56.325	419	162	5	5	419	3	404	2.71e-176	499

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene47029.t1	AT2G26980	83.614	415	66	1	5	419	16	428	736
MS.gene47029.t1	AT2G26980	83.614	415	66	1	5	419	6	418	736
MS.gene47029.t1	AT5G21326	78.759	419	87	1	1	419	1	417	699
MS.gene47029.t1	AT2G26980	80.590	407	74	1	5	411	6	407	690
MS.gene47029.t1	AT2G26980	83.424	368	61	0	5	372	6	373	656
MS.gene47029.t1	AT1G30270	72.115	416	107	5	10	419	28	440	623
MS.gene47029.t1	AT1G30270	72.115	416	107	5	10	419	28	440	621
MS.gene47029.t1	AT1G01140	69.176	425	126	4	2	422	8	431	619
MS.gene47029.t1	AT1G01140	69.031	423	126	4	2	422	8	427	615
MS.gene47029.t1	AT1G01140	68.706	425	126	5	2	422	8	429	610

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Find 95 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTAATGTTGCCACAG+AGG	0.668073	5.1:-69696548	MS.gene47029:intron
AAATGTTGTTCGGCTATATG+AGG	0.452536	5.1:-69699791	MS.gene47029:intron
AAATTTGTTTGATGTTGAAC+AGG	0.448519	5.1:-69697400	MS.gene47029:intron
AACCTGCAACCAATACAAAG+AGG	0.623603	5.1:+69698611	None:intergenic
AACCTTAAAGTCTCCGATTT+TGG	0.136576	5.1:-69698992	MS.gene47029:CDS
AAGGTAAACCATGGACGGAT+GGG	0.634281	5.1:-69699243	MS.gene47029:CDS
AAGGTTCAGCCCTCTAGACA+TGG	0.554908	5.1:+69697425	None:intergenic
AATCAACTCAAATGCATTCA+TGG	0.391948	5.1:+69697449	None:intergenic
AATGATGTTTCTTACAGTCA+TGG	0.488459	5.1:+69698372	None:intergenic
AATTCGAAAGCTGGAAGGAA+AGG	0.547271	5.1:-69696571	MS.gene47029:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGGGTCATGATTTG+TGG	+	chr5.1:69697218-69697237	None:intergenic	30.0%
AATCAACTCAAATGCATTCA+TGG	+	chr5.1:69699154-69699173	None:intergenic	30.0%
AATGATGTTTCTTACAGTCA+TGG	+	chr5.1:69698231-69698250	None:intergenic	30.0%
AATTGAAAGAGTAAAACTGG+AGG	+	chr5.1:69698090-69698109	None:intergenic	30.0%
AGACGAAGAATTCAAATACA+AGG	-	chr5.1:69699682-69699701	MS.gene47029:intron	30.0%
ATAAGATTAGGGTCATCAAA+AGG	+	chr5.1:69698020-69698039	None:intergenic	30.0%
ATACATGAATGTCTCACAAA+TGG	+	chr5.1:69697478-69697497	None:intergenic	30.0%
ATCACAATCATGGAATATCT+CGG	+	chr5.1:69699254-69699273	None:intergenic	30.0%
ATGATCAAAATAGGGTTGTT+TGG	+	chr5.1:69699603-69699622	None:intergenic	30.0%
ATGATGTTTCTTACAGTCAT+GGG	+	chr5.1:69698230-69698249	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	69696364	69700258	69696364	ID=MS.gene47029
chr5.1	mRNA	69696364	69700258	69696364	ID=MS.gene47029.t1;Parent=MS.gene47029
chr5.1	exon	69700088	69700258	69700088	ID=MS.gene47029.t1.exon1;Parent=MS.gene47029.t1
chr5.1	CDS	69700088	69700258	69700088	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69699792	69699854	69699792	ID=MS.gene47029.t1.exon2;Parent=MS.gene47029.t1
chr5.1	CDS	69699792	69699854	69699792	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69699480	69699551	69699480	ID=MS.gene47029.t1.exon3;Parent=MS.gene47029.t1
chr5.1	CDS	69699480	69699551	69699480	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69699155	69699262	69699155	ID=MS.gene47029.t1.exon4;Parent=MS.gene47029.t1
chr5.1	CDS	69699155	69699262	69699155	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69698964	69699044	69698964	ID=MS.gene47029.t1.exon5;Parent=MS.gene47029.t1
chr5.1	CDS	69698964	69699044	69698964	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69698797	69698850	69698797	ID=MS.gene47029.t1.exon6;Parent=MS.gene47029.t1
chr5.1	CDS	69698797	69698850	69698797	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69698567	69698692	69698567	ID=MS.gene47029.t1.exon7;Parent=MS.gene47029.t1
chr5.1	CDS	69698567	69698692	69698567	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69698387	69698476	69698387	ID=MS.gene47029.t1.exon8;Parent=MS.gene47029.t1
chr5.1	CDS	69698387	69698476	69698387	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69697609	69697731	69697609	ID=MS.gene47029.t1.exon9;Parent=MS.gene47029.t1
chr5.1	CDS	69697609	69697731	69697609	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69697401	69697511	69697401	ID=MS.gene47029.t1.exon10;Parent=MS.gene47029.t1
chr5.1	CDS	69697401	69697511	69697401	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69696705	69696818	69696705	ID=MS.gene47029.t1.exon11;Parent=MS.gene47029.t1
chr5.1	CDS	69696705	69696818	69696705	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69696549	69696605	69696549	ID=MS.gene47029.t1.exon12;Parent=MS.gene47029.t1
chr5.1	CDS	69696549	69696605	69696549	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1
chr5.1	exon	69696364	69696465	69696364	ID=MS.gene47029.t1.exon13;Parent=MS.gene47029.t1
chr5.1	CDS	69696364	69696465	69696364	ID=cds.MS.gene47029.t1;Parent=MS.gene47029.t1

Gene Sequence

>MS.gene47029

ATGAGTCAGCCTAAAATTAAGCGTAGAGTCGGTATATATGAGGTTGGAAGGACCATTGGTGAGGGAACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGTGAAGCCGTGGCTCTCAAAATTCTTGACAAAGAGAAAGTTCTCAAGCACAAGATGGCTGAGCAGGTGGTTTTCGGAGATTTCCTTTAGTCCTTTTCTTCATTTAATTCTTGAAAAACATACATTTATATGACATAATTGTTTGCTGTATGAGCTGCACTTGCCCTTAGTCCTGTTTTCAAAATTCAGTTTTCATGCATGATATTTTCTTTCCATCAAATTTTGTTCATTCCAAACAAACACTTAGACTCTCGCAGGATGAAGTCAAGTCTCTTATATGTTTGAATGTGTTTTTTCAGATCAAGAGGGAAATTGCTACCATGAAGTTAATCAAGCATCCAAATGTTGTTCGGCTATATGAGGTTGCTGACATGATGACATTTCTTTTCATTAATCTCACTAACCTTCCAGATATTAAATTTGATGATAGTGCTGTCTTGTTTGCGTATCCTCTAGCATTTTCACTAGTACATACCTTCCAACGAAACAGAATTTACTTGATTAGGAAGTAAATCTGCAATAAGAGAAGTCAAATTCATTCTCAACACAGTTTACTCTTTTGTCAAATTCTGATTCTAATGTCGAGACATTTTTGCTTACAGGTCATGGGAAGCAGGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTGAGTAAATGAAATCTTGTTTTTTCATTTTCAATCAGTTCAAAATGGTGATTAATTGGCCACATTTGGAGTCCACAAATCATGACCCTTATTTTCTTATTCAATCATAATCTGTTGGTATTCTAAATGTCGTTGCGTTGAATCAAAATACATGAATTCCATCTTTAACTATACGGGAAAAAAATTGTATGTGTCTAATGGAATTTTTGTTGTGAAGGTAAACCATGGACGGATGGGTGAACCTGAAGCACGTAGGTATTTCCAGCAGCTTATAAATGTTGTTGACTATTGTCACAGCAGAGGTGTCTATCACAGAGATCTGAAGGTAAGAGCCATTTGTGAGACATTCATGTATGCTGATGCTAGAACATGTATTGATATAATAAAAAAAGTAAACTAACATAAATTTCATTGGTATTCATGAACTTTGTGCAGCCAGAAAATTTGCTATTAGATGCTTATGGTAACCTTAAAGTCTCCGATTTTGGATTGAGTGCACTCTCCCAGCAAGTTAGGGTAAGCATGGTCCATTGCCTTCTGAGTTTTTCTTTTCTTGGTTGTTATACTCGATGAAGTTATCATGCATCAAACCGGTTTATTCATATCTTACAAAATGGTTGTCTTTACAGGATGACGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCAGAGGTGAAGACAAACGCCGCATTATTTCATGTTACTTTGTCGTGTGTATTTCTAAATTCATATATTGAGTCACTTTCTAACTATATATATTCTTGTTATATATATAGGTTCTTAATGATAGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCTTGTGGAGTGATCCTCTTTGTATTGGTTGCAGGTTACTTGCCTTTTGATGACCCTAATCTTATGGAACTGTATAAAAAAGTGAGTGCGCACCATTTGAACATTTTTCCCCCCTCCAGTTTTACTCTTTCAATTGTTTTCATTTTATGACTTTCGTTTCTTGATCCACAGATCTCGTCTGCTGATTTTACTTGCCCCCCGTGGCTTTCTTTCAGCGCGAGGAAATTGATAACTCGAATCTTGGATCCCAATCCCATGACTGTAAGAAACATCATTTTATTATCTGTCTGCTACTTGTCATGTAAATTGGCTGTTTGTAATCCTGTGTTATCAATTGCTGATCTCAAATTTTGCTACGCAACAGTGCTATTGCGTCGCTATTTGACAACATTTTGTACTAAATAACATATCACGGAACAATAGCGACTTGTTCAAATCAAGCTATGCTATGGTGCTGTTTGGCCACCTTTTAGTAATATAGTTGTAGTTTATCGATTGTAAAGGCTAATCTGGTCCCCTGTAGTCTGCATCGGTTTGATTGCATGGTTATGTAAATCACGCTAATAGATCTTTTTGGGCCAGTTTGGTTTGAGAAAACTTTATCTATTTTTATTTTTTGTTTTGACTTTTAATTGAAAAATTTCCCCTTGTTTTCAAAAATTTGTAATAGTGAAAACAGAAGACAGAGTTAAAATAAGGGTCAGCTTTGCAATTAAAAGTGAAAACAATAAATAAAAACGGTTAATGTTTTCTCAAACCAAACAGTAGAAGCACATTTAGCTACTCCCCTGCTCCAACAAAAGGCTAAAGAGAAAAAAGAAAAAAACTAATCATCAATCTACATTGTCATGTTTGTTTTTACGTAAACTAGCTAAATTTTTGCCTATGAATCTGACTTACCTCAACTGTTTGGCAGCGTATCACTATGGCTGAGATTTTGGACGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAAAGCGGGGAAACCAACCTCGACGATGTAGAAGCCGTCTTTAAAGATTCGGAAGTACGTTGAAGATTTTTTAAATATGGTTTTGATATTTGATTTTATTTAAGTTCTGGAACATTGTATCATAAAGGATTTTGTCTATATATATTCACAGGAGCACCATGTGACAGAAAAGAAAGAAGAGCAGCCAACATCCATGAATGCATTTGAGTTGATTTCCATGTCTAGAGGGCTGAACCTTGAAAATTTGTTTGATGTTGAACAGGTTTGCAAGTTAACATAATAAGTTTCTTTCCGAGATATTCCATGATTGTGATGAATATTTAAGCTTTGTTTGGGAAAAAGTAGCACATGATAAATAAGCTAGCTAATGGCTGATGAATTTATAACTGATAGCATATAAGCTAGCTTATAGATGATGGCGGATAAGCTAGCTGATTGAATTTGAAGTGTTTTTAATTGATAAATACAAATGACATAAAAAATATATGTTGAATTAATGTTTAAAGTTTTCAAATAAAGATCATGAGGGTAAAAGTAGAGAAAAATGATACACTGCAAGGTCGGTCAATTACTACTTGGTACAATCTCAAAAAACACCGTTAGTTAAAAAATGCTTTAAGCTCGTGAGAGAATATCGTTACCAAACAACCCTATTTTGATCATACAAGCTTAAACACTAAAAACTTTCTGTTATAAGCTAGCTGTTTGGCCTTTTCAAAAAGAGACGAAGAATTCAAATACAAGGAAAAGCATGCATATTCATTTTAACATATAAACGAGCATTTTGGTTTTGTTAAAACTAGTTAACTTTGTGTTGCTTTATTCTTTATGTCATTGACTATAGGGTTTTAAAAGGGAAACAAGGTTCACGTCGCAATCTCCTGCAGACGAGATAATCAACAAGATTGAAGAAGCTGCTAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTTCAAGGTAAGCCATACTTTTTGCAACTCAACGTCAGCTTGTACTCGAACATATGGCTATAGATTTAATGATGTTTTGTGAAATTAATAAAACCATTACCTGCAGATGAGGCTTGCAAATTCGAAAGCTGGAAGGAAAGGAAACCTTAATGTTGCCACAGAGGTATATGATCTTCATTTTTGTGTTTTTGTAACATGGTACACTTTTATGTCATATTCTTGTATTAAGGTTGTCATTGTAAATAGGTATTTCAAGTGGCACCTTCTCTTCACATGGTTGAAGTAAGGAAAGCAAAAGGAGATACGTTGGAGTTCCATAAGGTTTCCTTCTACCCCTTTTTTGTTTAA

Protein sequence

>MS.gene47029.t1

MSQPKIKRRVGIYEVGRTIGEGTFAKVKFARNSETGEAVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSRTKIYIVLEFVTGGELFDKIVNHGRMGEPEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMELYKKISSADFTCPPWLSFSARKLITRILDPNPMTRITMAEILDDEWFKKDYKPPVFEESGETNLDDVEAVFKDSEEHHVTEKKEEQPTSMNAFELISMSRGLNLENLFDVEQGFKRETRFTSQSPADEIINKIEEAAKPLGFDVQKKNFKMRLANSKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKVSFYPFFV