Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47176.t1 | XP_013451444.1 | 97.5 | 162 | 4 | 0 | 1 | 162 | 1 | 162 | 1.70E-83 | 318.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47176.t1 | P92792 | 74.7 | 158 | 39 | 1 | 5 | 162 | 4 | 160 | 2.1e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47176.t1 | A0A072U6U8 | 97.5 | 162 | 4 | 0 | 1 | 162 | 1 | 162 | 1.3e-83 | 318.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene47176 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene47176 | 0.822104 | 2.83E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene47176 | 0.811589 | 6.49E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene47176 | 0.806034 | 1.00E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene47176 | 0.830634 | 2.63E-55 | -1.69E-46 |
| MS.gene050916 | MS.gene47176 | 0.807591 | 4.69E-50 | -1.69E-46 |
| MS.gene053080 | MS.gene47176 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene47176 | 0.844258 | 8.45E-59 | -1.69E-46 |
| MS.gene056091 | MS.gene47176 | 0.811248 | 7.70E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene47176 | 0.811105 | 8.27E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene47176 | 0.803327 | 3.67E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene47176 | 0.82585 | 3.74E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene47176 | 0.805979 | 1.03E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene47176 | 0.801091 | 1.06E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene47176 | 0.81612 | 6.51E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene47176 | 0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene060763 | MS.gene47176 | 0.801606 | 8.32E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene47176 | 0.846828 | 1.70E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47176.t1 | MTR_6g024140 | 97.531 | 162 | 4 | 0 | 1 | 162 | 1 | 162 | 5.33e-116 | 327 |
| MS.gene47176.t1 | MTR_3g085410 | 58.642 | 162 | 67 | 0 | 1 | 162 | 1 | 162 | 2.22e-59 | 183 |
| MS.gene47176.t1 | MTR_6g044560 | 49.080 | 163 | 77 | 2 | 1 | 162 | 1 | 158 | 1.30e-39 | 140 |
| MS.gene47176.t1 | MTR_6g016250 | 40.000 | 160 | 62 | 3 | 21 | 152 | 8 | 161 | 3.02e-26 | 98.2 |
| MS.gene47176.t1 | MTR_6g012540 | 46.610 | 118 | 58 | 2 | 17 | 133 | 16 | 129 | 7.65e-26 | 99.0 |
| MS.gene47176.t1 | MTR_7g099160 | 36.364 | 176 | 97 | 3 | 1 | 162 | 1 | 175 | 5.56e-21 | 89.0 |
| MS.gene47176.t1 | MTR_3g085420 | 38.636 | 132 | 55 | 3 | 1 | 130 | 6 | 113 | 6.20e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47176.t1 | AT1G27390 | 58.000 | 150 | 63 | 0 | 1 | 150 | 1 | 150 | 5.08e-62 | 190 |
| MS.gene47176.t1 | AT3G27080 | 59.006 | 161 | 63 | 1 | 5 | 162 | 4 | 164 | 8.13e-62 | 189 |
| MS.gene47176.t1 | AT5G40930 | 58.125 | 160 | 53 | 3 | 1 | 160 | 1 | 146 | 1.07e-55 | 172 |
| MS.gene47176.t1 | AT5G40930 | 58.125 | 160 | 53 | 3 | 1 | 160 | 1 | 146 | 2.69e-55 | 172 |
| MS.gene47176.t1 | AT3G27070 | 56.522 | 138 | 60 | 0 | 8 | 145 | 1 | 138 | 5.41e-49 | 156 |
| MS.gene47176.t1 | AT1G27390 | 58.511 | 94 | 39 | 0 | 57 | 150 | 1 | 94 | 5.29e-34 | 117 |
| MS.gene47176.t1 | AT3G27070 | 54.118 | 85 | 39 | 0 | 61 | 145 | 114 | 198 | 5.20e-25 | 97.1 |
Find 40 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGAGCGTCATGCTTGTT+AGG | 0.300518 | 6.3:+17266369 | None:intergenic |
| CTAACAAGCATGACGCTCTT+TGG | 0.317066 | 6.3:-17266368 | MS.gene47176:CDS |
| ACTTTAGCCTCGTCCACATC+TGG | 0.325905 | 6.3:+17266306 | None:intergenic |
| ATCAGCATCGAGAGGGTTCT+TGG | 0.367687 | 6.3:+17268158 | None:intergenic |
| GAAATACATAAGCATGGATT+AGG | 0.408868 | 6.3:-17264901 | MS.gene47176:CDS |
| GCATGACGCTCTTTGGTGCC+TGG | 0.428053 | 6.3:-17266361 | MS.gene47176:CDS |
| CGAACTCTACCGCAAATCAT+TGG | 0.437270 | 6.3:-17266108 | MS.gene47176:CDS |
| CTCTGCAGAATTTGACAAGA+TGG | 0.446686 | 6.3:-17267078 | MS.gene47176:intron |
| TTCAGATGCTATTTCAAAGC+TGG | 0.452976 | 6.3:-17266412 | MS.gene47176:intron |
| TTCGTTCTGTTGCAAATCCA+TGG | 0.462675 | 6.3:+17268236 | None:intergenic |
| AGGGTCATCTTCTTTGACTC+GGG | 0.469648 | 6.3:+17267016 | None:intergenic |
| CAGCCACTTCCAATGATTTG+CGG | 0.472358 | 6.3:+17266099 | None:intergenic |
| CATGACGCTCTTTGGTGCCT+GGG | 0.480309 | 6.3:-17266360 | MS.gene47176:CDS |
| TTGCGGTAGAGTTCGTTTGA+AGG | 0.482619 | 6.3:+17266116 | None:intergenic |
| ATCATTGGAAGTGGCTGCTA+AGG | 0.490666 | 6.3:-17266093 | MS.gene47176:intron |
| TGTATTTCTACATGTAGCTC+AGG | 0.497343 | 6.3:+17264916 | None:intergenic |
| TGCTATTTCAAAGCTGGAGG+AGG | 0.506923 | 6.3:-17266406 | MS.gene47176:CDS |
| GCTGGTCCATCTTCTTCTGC+CGG | 0.517761 | 6.3:-17264859 | MS.gene47176:CDS |
| TCTGCAGAATTTGACAAGAT+GGG | 0.521349 | 6.3:-17267077 | MS.gene47176:intron |
| ATTAGTTATTACCTTTGTAC+CGG | 0.521398 | 6.3:+17264840 | None:intergenic |
| CTTTAGCCTCGTCCACATCT+GGG | 0.526481 | 6.3:+17266307 | None:intergenic |
| AAGGGTCATCTTCTTTGACT+CGG | 0.533813 | 6.3:+17267015 | None:intergenic |
| GGGAAATGCTCTCACTTCGC+AGG | 0.534413 | 6.3:-17266340 | MS.gene47176:CDS |
| GCGAAGTGAGAGCATTTCCC+AGG | 0.537409 | 6.3:+17266343 | None:intergenic |
| CTACCGCAAATCATTGGAAG+TGG | 0.545747 | 6.3:-17266102 | MS.gene47176:CDS |
| CAGCAAGCAGTAGAGGCAGC+TGG | 0.555623 | 6.3:-17264877 | MS.gene47176:CDS |
| TTTGTACCGGCAGAAGAAGA+TGG | 0.557794 | 6.3:+17264853 | None:intergenic |
| ATCTTCTTCTGCCGGTACAA+AGG | 0.573447 | 6.3:-17264851 | MS.gene47176:intron |
| ATTAGGTCAGCAAGCAGTAG+AGG | 0.574544 | 6.3:-17264884 | MS.gene47176:CDS |
| AGATGCTATTTCAAAGCTGG+AGG | 0.576638 | 6.3:-17266409 | MS.gene47176:CDS |
| GAGTCAAAGAAGATGACCCT+TGG | 0.580952 | 6.3:-17267013 | MS.gene47176:intron |
| CAGAATTTGACAAGATGGGG+TGG | 0.587171 | 6.3:-17267073 | MS.gene47176:CDS |
| TTTAAACCCAGATGTGGACG+AGG | 0.591013 | 6.3:-17266313 | MS.gene47176:CDS |
| CATGTAGAAATACATAAGCA+TGG | 0.592725 | 6.3:-17264907 | MS.gene47176:CDS |
| CTTTCAACAAGCTGTTGATG+AGG | 0.593601 | 6.3:-17266259 | MS.gene47176:intron |
| CTGCAGAATTTGACAAGATG+GGG | 0.603692 | 6.3:-17267076 | MS.gene47176:intron |
| CTTGGTGTATTCAGCTTCAG+CGG | 0.606207 | 6.3:+17268176 | None:intergenic |
| GACTGACATCAGCATCGAGA+GGG | 0.609421 | 6.3:+17268151 | None:intergenic |
| GGCTAAAGTTTACTTTGACA+AGG | 0.646740 | 6.3:-17266292 | MS.gene47176:CDS |
| AGACTGACATCAGCATCGAG+AGG | 0.704805 | 6.3:+17268150 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATTAAAAAAA+GGG | + | chr6.3:17264892-17264911 | None:intergenic | 0.0% |
| !! | TAAAAAAAAAAATTAAAAAA+AGG | + | chr6.3:17264893-17264912 | None:intergenic | 0.0% |
| !! | AAAATTTATTGTATAATCTT+TGG | - | chr6.3:17265353-17265372 | MS.gene47176:intron | 10.0% |
| !! | AACAAAATTGTAAAAACAAA+AGG | + | chr6.3:17266044-17266063 | None:intergenic | 15.0% |
| !! | AATTAAAAAAAGGGAAAAAT+TGG | + | chr6.3:17264883-17264902 | None:intergenic | 15.0% |
| !!! | GAAATTTTGTGTATAATTTT+TGG | - | chr6.3:17265149-17265168 | MS.gene47176:intron | 15.0% |
| !!! | GAAATTTTGTTTGTAATTTT+TGG | - | chr6.3:17265088-17265107 | MS.gene47176:intron | 15.0% |
| !!! | GTTATTATGTTTCATTTTAA+AGG | - | chr6.3:17267512-17267531 | MS.gene47176:intron | 15.0% |
| !!! | TATAATTTTTGGAATTCTTT+TGG | - | chr6.3:17265496-17265515 | MS.gene47176:intron | 15.0% |
| !!! | TGTATAATTTTTCGTATATA+TGG | - | chr6.3:17265314-17265333 | MS.gene47176:intron | 15.0% |
| !!! | TTACATGTGTTTTTATTAAA+CGG | - | chr6.3:17266142-17266161 | MS.gene47176:intron | 15.0% |
| !!! | TTTTTACTACTATAAATCTA+TGG | - | chr6.3:17267212-17267231 | MS.gene47176:intron | 15.0% |
| !! | AAAAACAAAGACATAAAAAC+AGG | + | chr6.3:17267636-17267655 | None:intergenic | 20.0% |
| !! | AAAACAAAGACATAAAAACA+GGG | + | chr6.3:17267635-17267654 | None:intergenic | 20.0% |
| !! | AAGATTTATAGTAGAACTAA+AGG | + | chr6.3:17267993-17268012 | None:intergenic | 20.0% |
| !! | TAGTGATATTGTTAATGAAA+AGG | + | chr6.3:17268017-17268036 | None:intergenic | 20.0% |
| !! | TGTATAATCTTTGGTATATA+TGG | - | chr6.3:17265362-17265381 | MS.gene47176:intron | 20.0% |
| !!! | AAAACCTTATTTCTTTTAAG+TGG | - | chr6.3:17267732-17267751 | MS.gene47176:intron | 20.0% |
| !!! | AAAATTTTCTGAGATGTTTT+TGG | - | chr6.3:17265561-17265580 | MS.gene47176:intron | 20.0% |
| !!! | ATAATTTCTGGAAATTTTCT+TGG | - | chr6.3:17265615-17265634 | MS.gene47176:intron | 20.0% |
| !!! | ATATAGATGAATTTTTGTGT+TGG | - | chr6.3:17265066-17265085 | MS.gene47176:intron | 20.0% |
| !!! | ATATTTGTGTTGCAAATTTT+TGG | - | chr6.3:17265436-17265455 | MS.gene47176:intron | 20.0% |
| !!! | GAAATTTTGTGTATAACTTT+TGG | - | chr6.3:17265889-17265908 | MS.gene47176:intron | 20.0% |
| !!! | GAGTGTTTTTTGTTTTATAT+AGG | - | chr6.3:17266866-17266885 | MS.gene47176:intron | 20.0% |
| !!! | GGGGATTTTTTTTTTTTTTT+TGG | - | chr6.3:17266196-17266215 | MS.gene47176:intron | 20.0% |
| !!! | GTAATTTTTGGAATTCTTTT+TGG | - | chr6.3:17265100-17265119 | MS.gene47176:intron | 20.0% |
| !!! | TAAAAGAAATAAGGTTTTCA+AGG | + | chr6.3:17267730-17267749 | None:intergenic | 20.0% |
| !!! | TGGAATTTGTGTATAATTTT+TGG | - | chr6.3:17265831-17265850 | MS.gene47176:intron | 20.0% |
| !!! | TTCCTTTATACCTTTTTTTT+AGG | - | chr6.3:17268066-17268085 | MS.gene47176:intron | 20.0% |
| !!! | TTTTCCATCTGTTTTATTTA+TGG | - | chr6.3:17266992-17267011 | MS.gene47176:intron | 20.0% |
| ! | AAACAAAGACATAAAAACAG+GGG | + | chr6.3:17267634-17267653 | None:intergenic | 25.0% |
| ! | AAACATAACACAAAAAACAC+AGG | + | chr6.3:17266078-17266097 | None:intergenic | 25.0% |
| ! | ACTTCCATAAATAAAACAGA+TGG | + | chr6.3:17266999-17267018 | None:intergenic | 25.0% |
| ! | AGATTTCAACTTTCTTATGA+TGG | - | chr6.3:17264944-17264963 | MS.gene47176:intron | 25.0% |
| ! | ATAAGTGTTCCTTGAAAATA+AGG | - | chr6.3:17267173-17267192 | MS.gene47176:intron | 25.0% |
| ! | ATATAAATGAGTTGTTGTGT+TGG | - | chr6.3:17265811-17265830 | MS.gene47176:intron | 25.0% |
| ! | ATTAGTTATTACCTTTGTAC+CGG | + | chr6.3:17268170-17268189 | None:intergenic | 25.0% |
| ! | ATTGTAAAAACAAAAGGACA+AGG | + | chr6.3:17266108-17266127 | None:intergenic | 25.0% |
| ! | ATTGTAAAAACAAAGAGACT+AGG | + | chr6.3:17266038-17266057 | None:intergenic | 25.0% |
| ! | GATTTCAACTTTCTTATGAT+GGG | - | chr6.3:17264945-17264964 | MS.gene47176:intron | 25.0% |
| ! | GCAAGCAATTAAGATTAAAT+CGG | - | chr6.3:17267682-17267701 | MS.gene47176:intron | 25.0% |
| ! | TAAATCTATGGTCATAGAAA+AGG | - | chr6.3:17267224-17267243 | MS.gene47176:intron | 25.0% |
| ! | TTGTAAAAACAAAAGGACAA+GGG | + | chr6.3:17266107-17266126 | None:intergenic | 25.0% |
| !! | AACAGAAATAACAGTGTTTT+TGG | + | chr6.3:17266364-17266383 | None:intergenic | 25.0% |
| !! | AGCCTAAAAAAAAGGTATAA+AGG | + | chr6.3:17268071-17268090 | None:intergenic | 25.0% |
| !! | GCAGATTTGTGTATAATTTT+TGG | - | chr6.3:17265485-17265504 | MS.gene47176:intron | 25.0% |
| !! | TATTGATTATCCTTATAAGC+TGG | + | chr6.3:17267156-17267175 | None:intergenic | 25.0% |
| !! | TGGAAATTCTTTTAGACATA+TGG | - | chr6.3:17265851-17265870 | MS.gene47176:intron | 25.0% |
| !! | TTTTGTATCATATTGTCATG+CGG | - | chr6.3:17266957-17266976 | MS.gene47176:intron | 25.0% |
| !!! | AATGACAATCGTAATTTGTT+TGG | - | chr6.3:17267043-17267062 | MS.gene47176:CDS | 25.0% |
| !!! | GTGTATAATTTTTGCCATTT+TGG | - | chr6.3:17265715-17265734 | MS.gene47176:intron | 25.0% |
| !!! | TGATTTTTGGAATTTGTTTC+TGG | - | chr6.3:17265785-17265804 | MS.gene47176:intron | 25.0% |
| !!! | TGTGTTTTTTGTGTTATGTT+TGG | - | chr6.3:17266077-17266096 | MS.gene47176:intron | 25.0% |
| !!! | TTGATTGATTTTGTGTCTAT+GGG | - | chr6.3:17264984-17265003 | MS.gene47176:intron | 25.0% |
| !!! | TTGCAAATTTTTGGTACATA+TGG | - | chr6.3:17265445-17265464 | MS.gene47176:intron | 25.0% |
| !!! | TTTGAGTTTGTATTTTGAGT+CGG | - | chr6.3:17266405-17266424 | MS.gene47176:CDS | 25.0% |
| !!! | TTTGATTGATTTTGTGTCTA+TGG | - | chr6.3:17264983-17265002 | MS.gene47176:intron | 25.0% |
| !!! | TTTTTGTAGTTTGGTCTTTT+GGG | - | chr6.3:17267940-17267959 | MS.gene47176:intron | 25.0% |
| AACTTAAGATGATATACTGC+AGG | + | chr6.3:17266308-17266327 | None:intergenic | 30.0% | |
| AAGTAGTCGACAAATACAAA+AGG | + | chr6.3:17267863-17267882 | None:intergenic | 30.0% | |
| ACTAAGGTTAGAAATTGAGT+CGG | - | chr6.3:17266432-17266451 | MS.gene47176:intron | 30.0% | |
| AGTAAGGGAACAAAGTAATA+AGG | + | chr6.3:17267813-17267832 | None:intergenic | 30.0% | |
| AGTAGTCGACAAATACAAAA+GGG | + | chr6.3:17267862-17267881 | None:intergenic | 30.0% | |
| AGTTCAGCATAAAAGAAAGA+TGG | + | chr6.3:17267896-17267915 | None:intergenic | 30.0% | |
| ATAACGCAATTACAACTACA+TGG | + | chr6.3:17267497-17267516 | None:intergenic | 30.0% | |
| ATATAGAGAATAAGCACCAA+GGG | + | chr6.3:17266013-17266032 | None:intergenic | 30.0% | |
| ATGAATGTATCATTGAAGTG+TGG | - | chr6.3:17266792-17266811 | MS.gene47176:intron | 30.0% | |
| CATGTAGAAATACATAAGCA+TGG | - | chr6.3:17268100-17268119 | MS.gene47176:intron | 30.0% | |
| GAAATACATAAGCATGGATT+AGG | - | chr6.3:17268106-17268125 | MS.gene47176:intron | 30.0% | |
| GCAAATCTGTGTATAATTCT+TGG | - | chr6.3:17265400-17265419 | MS.gene47176:intron | 30.0% | |
| GTAAGGGAACAAAGTAATAA+GGG | + | chr6.3:17267812-17267831 | None:intergenic | 30.0% | |
| GTACCAAAAACATTCCAAAA+TGG | + | chr6.3:17265732-17265751 | None:intergenic | 30.0% | |
| GTCATTTCTATATTACAGTG+AGG | + | chr6.3:17267029-17267048 | None:intergenic | 30.0% | |
| GTTTGTTCATATGCTTATGT+TGG | - | chr6.3:17265205-17265224 | MS.gene47176:intron | 30.0% | |
| TACACAATTTCTACACAACT+AGG | + | chr6.3:17265298-17265317 | None:intergenic | 30.0% | |
| TATAAGCTGGTCATCTTAAA+CGG | + | chr6.3:17267143-17267162 | None:intergenic | 30.0% | |
| TATTTCCCCGTATCATTATA+TGG | + | chr6.3:17266266-17266285 | None:intergenic | 30.0% | |
| TGAATGTATCATTGAAGTGT+GGG | - | chr6.3:17266793-17266812 | MS.gene47176:intron | 30.0% | |
| TGTATAATTCTTGGAACACA+TGG | - | chr6.3:17265409-17265428 | MS.gene47176:intron | 30.0% | |
| ! | ATTTTGTGTTCCCTTATTGA+AGG | - | chr6.3:17267103-17267122 | MS.gene47176:intron | 30.0% |
| ! | GAGAAACCTAACATCTTTTT+GGG | - | chr6.3:17267073-17267092 | MS.gene47176:CDS | 30.0% |
| ! | GGAAATTTTCTTGGTACATA+TGG | - | chr6.3:17265624-17265643 | MS.gene47176:intron | 30.0% |
| ! | TGAGAAACCTAACATCTTTT+TGG | - | chr6.3:17267072-17267091 | MS.gene47176:CDS | 30.0% |
| ! | TGGAAATTGCGTATAGTTTT+TGG | - | chr6.3:17265661-17265680 | MS.gene47176:intron | 30.0% |
| ! | TGGATTTCTGACTTGAAATT+TGG | - | chr6.3:17266570-17266589 | MS.gene47176:intron | 30.0% |
| ! | TTCTTTCTCTGTATGTGTTT+TGG | - | chr6.3:17267917-17267936 | MS.gene47176:intron | 30.0% |
| ! | TTTAAGATGACCAGCTTATA+AGG | - | chr6.3:17267143-17267162 | MS.gene47176:intron | 30.0% |
| ! | TTTTGGTACACAAGTTGTAT+TGG | - | chr6.3:17265166-17265185 | MS.gene47176:intron | 30.0% |
| !! | ACCTTATTTCTTTTAAGTGG+AGG | - | chr6.3:17267735-17267754 | MS.gene47176:intron | 30.0% |
| !! | ACTTTGCTATCGTTTTCTAT+TGG | - | chr6.3:17268220-17268239 | MS.gene47176:CDS | 30.0% |
| !! | AGAAATAAGGTTTTCAAGGT+TGG | + | chr6.3:17267726-17267745 | None:intergenic | 30.0% |
| !! | CCTTATTTCTTTTAAGTGGA+GGG | - | chr6.3:17267736-17267755 | MS.gene47176:intron | 30.0% |
| !! | GTTTTTGTAGTTTGGTCTTT+TGG | - | chr6.3:17267939-17267958 | MS.gene47176:intron | 30.0% |
| !! | TATGAATGAGTTTGTTGTGA+TGG | - | chr6.3:17265127-17265146 | MS.gene47176:intron | 30.0% |
| !! | TGTATTTGTCGACTACTTTT+AGG | - | chr6.3:17267865-17267884 | MS.gene47176:intron | 30.0% |
| !!! | AACACAAGTCCTTATTTTCA+AGG | + | chr6.3:17267185-17267204 | None:intergenic | 30.0% |
| !!! | AATGTTTTTGGTACATACAG+AGG | - | chr6.3:17265738-17265757 | MS.gene47176:intron | 30.0% |
| !!! | CATATGGTGAGTTGTTATTT+TGG | - | chr6.3:17265867-17265886 | MS.gene47176:intron | 30.0% |
| !!! | CGTATAGTTTTTGGTACATA+TGG | - | chr6.3:17265670-17265689 | MS.gene47176:intron | 30.0% |
| !!! | GTGTTTTGGTTTTTGTAGTT+TGG | - | chr6.3:17267931-17267950 | MS.gene47176:intron | 30.0% |
| !!! | TTGCCATTTTGGAATGTTTT+TGG | - | chr6.3:17265726-17265745 | MS.gene47176:intron | 30.0% |
| AACTAAAGGATGCATGAGAA+TGG | + | chr6.3:17267979-17267998 | None:intergenic | 35.0% | |
| ACGATCAACAAAGTAGAGTA+AGG | + | chr6.3:17267829-17267848 | None:intergenic | 35.0% | |
| ACTTGACCCAAAAAGATGTT+AGG | + | chr6.3:17267082-17267101 | None:intergenic | 35.0% | |
| AGGTACATGTTCGATTAGAT+CGG | - | chr6.3:17267342-17267361 | MS.gene47176:intron | 35.0% | |
| AGTCGGTTGATTGTATCTAA+TGG | - | chr6.3:17266449-17266468 | MS.gene47176:intron | 35.0% | |
| ATAATTCTTGGAACACATGG+AGG | - | chr6.3:17265412-17265431 | MS.gene47176:intron | 35.0% | |
| ATATTCTGACTGCAGCAAAT+CGG | - | chr6.3:17266501-17266520 | MS.gene47176:intron | 35.0% | |
| CATATAGAGAATAAGCACCA+AGG | + | chr6.3:17266014-17266033 | None:intergenic | 35.0% | |
| CCCTCCACTTAAAAGAAATA+AGG | + | chr6.3:17267739-17267758 | None:intergenic | 35.0% | |
| CGATCAACAAAGTAGAGTAA+GGG | + | chr6.3:17267828-17267847 | None:intergenic | 35.0% | |
| GGCTAAAGTTTACTTTGACA+AGG | - | chr6.3:17266715-17266734 | MS.gene47176:intron | 35.0% | |
| GTACATATGAGTTGTTGTGT+TGG | - | chr6.3:17265583-17265602 | MS.gene47176:intron | 35.0% | |
| TAAGGGTTCAGTTTCTTAAC+AGG | + | chr6.3:17267795-17267814 | None:intergenic | 35.0% | |
| TCTGCAGAATTTGACAAGAT+GGG | - | chr6.3:17265930-17265949 | MS.gene47176:intron | 35.0% | |
| TGGAAGTGGTGTATAATTTC+TGG | - | chr6.3:17265603-17265622 | MS.gene47176:intron | 35.0% | |
| TGGTACATATGGATGTTCTT+GGG | - | chr6.3:17265681-17265700 | MS.gene47176:intron | 35.0% | |
| TGTTTGGACTTGTGTTTAGA+GGG | - | chr6.3:17266176-17266195 | MS.gene47176:intron | 35.0% | |
| TTAGGGGCCATATAATGATA+CGG | - | chr6.3:17266256-17266275 | MS.gene47176:intron | 35.0% | |
| TTGCAGATAAGATGTGATTC+TGG | + | chr6.3:17267549-17267568 | None:intergenic | 35.0% | |
| TTGGTACATATGGATGTTCT+TGG | - | chr6.3:17265680-17265699 | MS.gene47176:intron | 35.0% | |
| ! | AGGTATGTTCGGTGATTTAA+TGG | - | chr6.3:17266934-17266953 | MS.gene47176:intron | 35.0% |
| ! | ATATCCAGCTTTGTAAAGCA+TGG | + | chr6.3:17267385-17267404 | None:intergenic | 35.0% |
| ! | TGTATTTCTACATGTAGCTC+AGG | + | chr6.3:17268094-17268113 | None:intergenic | 35.0% |
| !! | ATTTTGAGTCGGAATCACTA+AGG | - | chr6.3:17266416-17266435 | MS.gene47176:intron | 35.0% |
| !! | GAACATTCGTTTGTTTTCTG+TGG | - | chr6.3:17266550-17266569 | MS.gene47176:intron | 35.0% |
| !! | TCTATGGGTGTTTTGTTGTA+AGG | - | chr6.3:17264999-17265018 | MS.gene47176:intron | 35.0% |
| !! | TTCAGATGCTATTTCAAAGC+TGG | - | chr6.3:17266595-17266614 | MS.gene47176:intron | 35.0% |
| AAGGGTCATCTTCTTTGACT+CGG | + | chr6.3:17265995-17266014 | None:intergenic | 40.0% | |
| AATCGGTCTTCCTGTTAAAG+AGG | - | chr6.3:17267699-17267718 | MS.gene47176:intron | 40.0% | |
| ACCAGTGAACTCCTTCAATA+AGG | + | chr6.3:17267117-17267136 | None:intergenic | 40.0% | |
| AGCTCAGGAGCCTAAAAAAA+AGG | + | chr6.3:17268079-17268098 | None:intergenic | 40.0% | |
| AGTTCCATGCTTTACAAAGC+TGG | - | chr6.3:17267378-17267397 | MS.gene47176:intron | 40.0% | |
| ATGAGTTGTTGTGTTGGAAG+TGG | - | chr6.3:17265589-17265608 | MS.gene47176:intron | 40.0% | |
| ATTCTTCACGCTGCTTCTAT+AGG | + | chr6.3:17266234-17266253 | None:intergenic | 40.0% | |
| CCAGTGAACTCCTTCAATAA+GGG | + | chr6.3:17267116-17267135 | None:intergenic | 40.0% | |
| CTCTGCAGAATTTGACAAGA+TGG | - | chr6.3:17265929-17265948 | MS.gene47176:intron | 40.0% | |
| CTGCAGAATTTGACAAGATG+GGG | - | chr6.3:17265931-17265950 | MS.gene47176:intron | 40.0% | |
| CTTTCAACAAGCTGTTGATG+AGG | - | chr6.3:17266748-17266767 | MS.gene47176:intron | 40.0% | |
| GAACATGTACCTCGTTGAAA+AGG | + | chr6.3:17267334-17267353 | None:intergenic | 40.0% | |
| GGTACATGTTCGATTAGATC+GGG | - | chr6.3:17267343-17267362 | MS.gene47176:intron | 40.0% | |
| GGTCATAGAAAAGGAATGAC+TGG | - | chr6.3:17267303-17267322 | MS.gene47176:intron | 40.0% | |
| GGTTCAGTTTCTTAACAGGA+AGG | + | chr6.3:17267791-17267810 | None:intergenic | 40.0% | |
| GTGTTTGGACTTGTGTTTAG+AGG | - | chr6.3:17266175-17266194 | MS.gene47176:intron | 40.0% | |
| GTTTGGACTTGTGTTTAGAG+GGG | - | chr6.3:17266177-17266196 | MS.gene47176:intron | 40.0% | |
| TAACAGGAAGGCAGATCAAA+AGG | + | chr6.3:17267779-17267798 | None:intergenic | 40.0% | |
| TAGGGGCCATATAATGATAC+GGG | - | chr6.3:17266257-17266276 | MS.gene47176:intron | 40.0% | |
| TATTCTGACTGCAGCAAATC+GGG | - | chr6.3:17266502-17266521 | MS.gene47176:intron | 40.0% | |
| TTTGCAAACCACAGCACAAT+GGG | + | chr6.3:17267412-17267431 | None:intergenic | 40.0% | |
| ! | AACGGTTTTTGTGTCGTGTT+TGG | - | chr6.3:17266160-17266179 | MS.gene47176:intron | 40.0% |
| ! | ATATGGTTGAGTTGTGGTGT+TGG | - | chr6.3:17265641-17265660 | MS.gene47176:intron | 40.0% |
| ! | GATTTTTCTTCAGCGTAGCA+TGG | + | chr6.3:17267661-17267680 | None:intergenic | 40.0% |
| ! | GGCATTTTTAAACCCAGATG+TGG | - | chr6.3:17266688-17266707 | MS.gene47176:intron | 40.0% |
| ! | TGGAATTCTTTTGGCACGTA+TGG | - | chr6.3:17265505-17265524 | MS.gene47176:intron | 40.0% |
| ! | TGGAGGTTGTGTGTGATTTT+TGG | - | chr6.3:17265772-17265791 | MS.gene47176:intron | 40.0% |
| ! | TGGTACATATGGTTGAGTTG+TGG | - | chr6.3:17265635-17265654 | MS.gene47176:intron | 40.0% |
| !! | AGATGCTATTTCAAAGCTGG+AGG | - | chr6.3:17266598-17266617 | MS.gene47176:intron | 40.0% |
| !! | TGTAGTTTGGTCTTTTGGGA+GGG | - | chr6.3:17267944-17267963 | MS.gene47176:intron | 40.0% |
| !! | TTGTAGTTTGGTCTTTTGGG+AGG | - | chr6.3:17267943-17267962 | MS.gene47176:intron | 40.0% |
| AAGCAGCGTGAAGAATGCTT+AGG | - | chr6.3:17266238-17266257 | MS.gene47176:intron | 45.0% | |
| AGCAGCGTGAAGAATGCTTA+GGG | - | chr6.3:17266239-17266258 | MS.gene47176:intron | 45.0% | |
| AGGGGCCATATAATGATACG+GGG | - | chr6.3:17266258-17266277 | MS.gene47176:intron | 45.0% | |
| AGGGTCATCTTCTTTGACTC+GGG | + | chr6.3:17265994-17266013 | None:intergenic | 45.0% | |
| AGTGGCTGCTAAGGTATGTT+CGG | - | chr6.3:17266923-17266942 | MS.gene47176:intron | 45.0% | |
| ATACAGAGGAGTTGTTGTGC+TGG | - | chr6.3:17265752-17265771 | MS.gene47176:intron | 45.0% | |
| ATATGTCACCCATTGTGCTG+TGG | - | chr6.3:17267401-17267420 | MS.gene47176:intron | 45.0% | |
| ATCATTGGAAGTGGCTGCTA+AGG | - | chr6.3:17266914-17266933 | MS.gene47176:intron | 45.0% | |
| ATCTTCTTCTGCCGGTACAA+AGG | - | chr6.3:17268156-17268175 | MS.gene47176:intron | 45.0% | |
| ATTAGGTCAGCAAGCAGTAG+AGG | - | chr6.3:17268123-17268142 | MS.gene47176:intron | 45.0% | |
| ATTCTGACTGCAGCAAATCG+GGG | - | chr6.3:17266503-17266522 | MS.gene47176:intron | 45.0% | |
| CAAGGTTGGACCTCTTTAAC+AGG | + | chr6.3:17267712-17267731 | None:intergenic | 45.0% | |
| CAGAATTTGACAAGATGGGG+TGG | - | chr6.3:17265934-17265953 | MS.gene47176:intron | 45.0% | |
| CAGCCACTTCCAATGATTTG+CGG | + | chr6.3:17266911-17266930 | None:intergenic | 45.0% | |
| CCCTTATTGAAGGAGTTCAC+TGG | - | chr6.3:17267113-17267132 | MS.gene47176:intron | 45.0% | |
| CGAACTCTACCGCAAATCAT+TGG | - | chr6.3:17266899-17266918 | MS.gene47176:intron | 45.0% | |
| CTAACAAGCATGACGCTCTT+TGG | - | chr6.3:17266639-17266658 | MS.gene47176:intron | 45.0% | |
| CTACCGCAAATCATTGGAAG+TGG | - | chr6.3:17266905-17266924 | MS.gene47176:intron | 45.0% | |
| CTTTGCAAACCACAGCACAA+TGG | + | chr6.3:17267413-17267432 | None:intergenic | 45.0% | |
| GAGTCAAAGAAGATGACCCT+TGG | - | chr6.3:17265994-17266013 | MS.gene47176:intron | 45.0% | |
| TGCACAGTTCTTGTGCAACA+GGG | - | chr6.3:17267571-17267590 | MS.gene47176:intron | 45.0% | |
| TTGCACAGTTCTTGTGCAAC+AGG | - | chr6.3:17267570-17267589 | MS.gene47176:intron | 45.0% | |
| TTGCGGTAGAGTTCGTTTGA+AGG | + | chr6.3:17266894-17266913 | None:intergenic | 45.0% | |
| TTTAAACCCAGATGTGGACG+AGG | - | chr6.3:17266694-17266713 | MS.gene47176:intron | 45.0% | |
| ! | AGGGGTTTTTCATCCGACAT+GGG | + | chr6.3:17267616-17267635 | None:intergenic | 45.0% |
| ! | CTGGTGTTTCCTTTTCAACG+AGG | - | chr6.3:17267322-17267341 | MS.gene47176:intron | 45.0% |
| ! | CTTGGTGTATTCAGCTTCAG+CGG | + | chr6.3:17264834-17264853 | None:intergenic | 45.0% |
| ! | GTTTTTCATCCGACATGGGT+AGG | + | chr6.3:17267612-17267631 | None:intergenic | 45.0% |
| ! | TTTGTACCGGCAGAAGAAGA+TGG | + | chr6.3:17268157-17268176 | None:intergenic | 45.0% |
| !! | CAAAGAGCGTCATGCTTGTT+AGG | + | chr6.3:17266641-17266660 | None:intergenic | 45.0% |
| !! | TGCTATTTCAAAGCTGGAGG+AGG | - | chr6.3:17266601-17266620 | MS.gene47176:intron | 45.0% |
| ACTTTAGCCTCGTCCACATC+TGG | + | chr6.3:17266704-17266723 | None:intergenic | 50.0% | |
| CTTTAGCCTCGTCCACATCT+GGG | + | chr6.3:17266703-17266722 | None:intergenic | 50.0% | |
| GCAGCGTGAAGAATGCTTAG+GGG | - | chr6.3:17266240-17266259 | MS.gene47176:intron | 50.0% | |
| TTCCTGGTTCCTACCCATGT+CGG | - | chr6.3:17267600-17267619 | MS.gene47176:intron | 50.0% | |
| TTCTGACTGCAGCAAATCGG+GGG | - | chr6.3:17266504-17266523 | MS.gene47176:intron | 50.0% | |
| ! | AGACTGACATCAGCATCGAG+AGG | + | chr6.3:17264860-17264879 | None:intergenic | 50.0% |
| ! | ATCAGCATCGAGAGGGTTCT+TGG | + | chr6.3:17264852-17264871 | None:intergenic | 50.0% |
| ! | CAGGGGTTTTTCATCCGACA+TGG | + | chr6.3:17267617-17267636 | None:intergenic | 50.0% |
| ! | GACTGACATCAGCATCGAGA+GGG | + | chr6.3:17264859-17264878 | None:intergenic | 50.0% |
| ! | TGCAACAGGGTTTTGCTTCC+TGG | - | chr6.3:17267584-17267603 | MS.gene47176:intron | 50.0% |
| ATCCGACATGGGTAGGAACC+AGG | + | chr6.3:17267605-17267624 | None:intergenic | 55.0% | |
| CAGAGGAGTTGTTGTGCTGG+AGG | - | chr6.3:17265755-17265774 | MS.gene47176:intron | 55.0% | |
| GCTGGTCCATCTTCTTCTGC+CGG | - | chr6.3:17268148-17268167 | MS.gene47176:intron | 55.0% | |
| GGGAAATGCTCTCACTTCGC+AGG | - | chr6.3:17266667-17266686 | MS.gene47176:intron | 55.0% | |
| TCTGACTGCAGCAAATCGGG+GGG | - | chr6.3:17266505-17266524 | MS.gene47176:intron | 55.0% | |
| !! | CATGACGCTCTTTGGTGCCT+GGG | - | chr6.3:17266647-17266666 | MS.gene47176:intron | 55.0% |
| !! | GCGAAGTGAGAGCATTTCCC+AGG | + | chr6.3:17266667-17266686 | None:intergenic | 55.0% |
| CAGCAAGCAGTAGAGGCAGC+TGG | - | chr6.3:17268130-17268149 | MS.gene47176:intron | 60.0% | |
| !! | GCATGACGCTCTTTGGTGCC+TGG | - | chr6.3:17266646-17266665 | MS.gene47176:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 17264773 | 17268256 | 17264773 | ID=MS.gene47176 |
| chr6.3 | mRNA | 17264773 | 17268256 | 17264773 | ID=MS.gene47176.t1;Parent=MS.gene47176 |
| chr6.3 | exon | 17268158 | 17268256 | 17268158 | ID=MS.gene47176.t1.exon1;Parent=MS.gene47176.t1 |
| chr6.3 | CDS | 17268158 | 17268256 | 17268158 | ID=cds.MS.gene47176.t1;Parent=MS.gene47176.t1 |
| chr6.3 | exon | 17267014 | 17267092 | 17267014 | ID=MS.gene47176.t1.exon2;Parent=MS.gene47176.t1 |
| chr6.3 | CDS | 17267014 | 17267092 | 17267014 | ID=cds.MS.gene47176.t1;Parent=MS.gene47176.t1 |
| chr6.3 | exon | 17266260 | 17266429 | 17266260 | ID=MS.gene47176.t1.exon3;Parent=MS.gene47176.t1 |
| chr6.3 | CDS | 17266260 | 17266429 | 17266260 | ID=cds.MS.gene47176.t1;Parent=MS.gene47176.t1 |
| chr6.3 | exon | 17266094 | 17266141 | 17266094 | ID=MS.gene47176.t1.exon4;Parent=MS.gene47176.t1 |
| chr6.3 | CDS | 17266094 | 17266141 | 17266094 | ID=cds.MS.gene47176.t1;Parent=MS.gene47176.t1 |
| chr6.3 | exon | 17264852 | 17264941 | 17264852 | ID=MS.gene47176.t1.exon5;Parent=MS.gene47176.t1 |
| chr6.3 | CDS | 17264852 | 17264941 | 17264852 | ID=cds.MS.gene47176.t1;Parent=MS.gene47176.t1 |
| chr6.3 | exon | 17264773 | 17264775 | 17264773 | ID=MS.gene47176.t1.exon6;Parent=MS.gene47176.t1 |
| chr6.3 | CDS | 17264773 | 17264775 | 17264773 | ID=cds.MS.gene47176.t1;Parent=MS.gene47176.t1 |
| Gene Sequence |
| Protein sequence |
