Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47402.t1 | XP_013468083.1 | 60.8 | 189 | 2 | 1 | 15 | 131 | 576 | 764 | 9.50E-48 | 199.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47402.t1 | A0A072VVJ3 | 60.8 | 189 | 2 | 1 | 15 | 131 | 576 | 764 | 6.9e-48 | 199.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene47402 | 0.831985 | 1.22E-55 | -1.69E-46 |
| MS.gene049824 | MS.gene47402 | 0.806421 | 8.29E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene47402 | 0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene05016 | MS.gene47402 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene47402 | 0.802459 | 5.56E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene47402 | 0.818135 | 2.29E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene47402 | 0.815469 | 9.10E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene47402 | 0.805208 | 1.49E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene47402 | 0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene47402 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene47402 | 0.806539 | 7.83E-50 | -1.69E-46 |
| MS.gene052879 | MS.gene47402 | 0.817356 | 3.44E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene47402 | 0.800476 | 1.42E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene47402 | 0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene055162 | MS.gene47402 | 0.807627 | 4.61E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene47402 | 0.844242 | 8.53E-59 | -1.69E-46 |
| MS.gene056553 | MS.gene47402 | 0.807756 | 4.33E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene47402 | 0.82348 | 1.35E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene47402 | 0.818962 | 1.49E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene47402 | 0.804967 | 1.68E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene47402 | 0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene47402 | 0.845837 | 3.17E-59 | -1.69E-46 |
| MS.gene059937 | MS.gene47402 | 0.811899 | 5.56E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene47402 | 0.822247 | 2.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47402.t1 | MTR_1g062330 | 92.222 | 90 | 7 | 0 | 15 | 104 | 576 | 665 | 1.07e-50 | 171 |
| MS.gene47402.t1 | MTR_1g062330 | 92.222 | 90 | 7 | 0 | 15 | 104 | 576 | 665 | 2.27e-50 | 171 |
| MS.gene47402.t1 | MTR_1g062330 | 100.000 | 33 | 0 | 0 | 99 | 131 | 732 | 764 | 2.40e-14 | 68.6 |
| MS.gene47402.t1 | MTR_7g102610 | 64.948 | 97 | 34 | 0 | 12 | 108 | 718 | 814 | 5.31e-41 | 144 |
| MS.gene47402.t1 | MTR_7g102610 | 84.848 | 33 | 5 | 0 | 99 | 131 | 877 | 909 | 1.74e-12 | 63.5 |
| MS.gene47402.t1 | MTR_1g068930 | 39.785 | 93 | 55 | 1 | 15 | 106 | 631 | 723 | 3.56e-17 | 76.6 |
| MS.gene47402.t1 | MTR_1g068930 | 39.785 | 93 | 55 | 1 | 15 | 106 | 668 | 760 | 3.57e-17 | 76.6 |
| MS.gene47402.t1 | MTR_4g050090 | 34.783 | 92 | 58 | 1 | 15 | 104 | 412 | 503 | 6.89e-13 | 64.7 |
| MS.gene47402.t1 | MTR_2g084425 | 60.000 | 55 | 19 | 2 | 80 | 131 | 927 | 981 | 3.52e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47402.t1 | AT2G36720 | 46.729 | 107 | 50 | 1 | 15 | 121 | 747 | 846 | 6.11e-26 | 102 |
| MS.gene47402.t1 | AT2G36720 | 46.729 | 107 | 50 | 1 | 15 | 121 | 747 | 846 | 6.11e-26 | 102 |
| MS.gene47402.t1 | AT3G53680 | 33.696 | 92 | 61 | 0 | 15 | 106 | 607 | 698 | 1.15e-14 | 69.7 |
| MS.gene47402.t1 | AT3G53680 | 33.696 | 92 | 61 | 0 | 15 | 106 | 609 | 700 | 1.15e-14 | 69.7 |
| MS.gene47402.t1 | AT2G37520 | 33.696 | 92 | 61 | 0 | 15 | 106 | 591 | 682 | 5.31e-14 | 67.8 |
| MS.gene47402.t1 | AT2G27980 | 39.362 | 94 | 53 | 2 | 15 | 104 | 828 | 921 | 1.26e-13 | 66.6 |
Find 35 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAGAATACATTCTATTT+TGG | 0.156580 | 1.4:+51299978 | MS.gene47402:CDS |
| ATCTTATATCAATCTCATTA+AGG | 0.198987 | 1.4:-51300089 | None:intergenic |
| TGAAACCAGGCCGTTGCTTT+TGG | 0.223567 | 1.4:+51300143 | MS.gene47402:CDS |
| ATAACATCCAAAAGAGATTC+AGG | 0.231457 | 1.4:-51300033 | None:intergenic |
| AAAAGCAACGGCCTGGTTTC+AGG | 0.258105 | 1.4:-51300141 | None:intergenic |
| GAAACTCCCTGAATCTCTTT+TGG | 0.272070 | 1.4:+51300026 | MS.gene47402:CDS |
| AAAGCAAGAGGATAGATATT+TGG | 0.304580 | 1.4:+51300062 | MS.gene47402:CDS |
| ACCCAAATTTATATTTCATA+TGG | 0.311853 | 1.4:-51301398 | None:intergenic |
| TGTCTTTCTTCATATATTGC+AGG | 0.338682 | 1.4:+51299918 | MS.gene47402:CDS |
| TCTTATATCAATCTCATTAA+GGG | 0.370075 | 1.4:-51300088 | None:intergenic |
| ATAAGATGGAGACTTGTTAA+TGG | 0.396793 | 1.4:+51300105 | MS.gene47402:CDS |
| CAATGCACGAGAACAGTGTT+TGG | 0.401405 | 1.4:-51301312 | None:intergenic |
| CAACAAAGCCAGTCCCCTTC+CGG | 0.403997 | 1.4:-51299946 | None:intergenic |
| TCATATATTGCAGGAATTGC+CGG | 0.405319 | 1.4:+51299927 | MS.gene47402:CDS |
| GTTTCTCAGCTTCCCTAACT+AGG | 0.428895 | 1.4:-51300008 | None:intergenic |
| AGGAATTGCCGGAAGGGGAC+TGG | 0.438872 | 1.4:+51299938 | MS.gene47402:CDS |
| AACTTACGTTGAATATTGAC+AGG | 0.442245 | 1.4:-51300170 | None:intergenic |
| TTTGGAGAACCTCCTAGTTA+GGG | 0.479610 | 1.4:+51299996 | MS.gene47402:CDS |
| GATTCTGCTTCTTCAGCAGC+TGG | 0.489139 | 1.4:-51301376 | None:intergenic |
| TCATAAAATGGCATATTTGA+AGG | 0.489326 | 1.4:+51299885 | None:intergenic |
| TTAATGAGATTGATATAAGA+TGG | 0.490803 | 1.4:+51300091 | MS.gene47402:CDS |
| GGCCTCCAAAAGCAACGGCC+TGG | 0.519244 | 1.4:-51300148 | None:intergenic |
| TAACATCCAAAAGAGATTCA+GGG | 0.524976 | 1.4:-51300032 | None:intergenic |
| CACTGTTCTCGTGCATTGAA+AGG | 0.526226 | 1.4:+51301317 | MS.gene47402:CDS |
| ATTGCAGGAATTGCCGGAAG+GGG | 0.570554 | 1.4:+51299933 | MS.gene47402:CDS |
| CTTCAGCAGCTGGTAACACA+AGG | 0.572407 | 1.4:-51301366 | None:intergenic |
| AAGGTTCTTCACATTCAAGA+AGG | 0.575726 | 1.4:-51301347 | None:intergenic |
| CTTATATCAATCTCATTAAG+GGG | 0.577053 | 1.4:-51300087 | None:intergenic |
| AAGTTGCTTCTCCTGAAACC+AGG | 0.585700 | 1.4:+51300130 | MS.gene47402:CDS |
| TATTGCAGGAATTGCCGGAA+GGG | 0.591120 | 1.4:+51299932 | MS.gene47402:CDS |
| TCTCAGCTTCCCTAACTAGG+AGG | 0.599220 | 1.4:-51300005 | None:intergenic |
| CTCGTGCATTGAAAGGCTAG+TGG | 0.612274 | 1.4:+51301324 | MS.gene47402:CDS |
| GACAGGGCCTCCAAAAGCAA+CGG | 0.618009 | 1.4:-51300153 | None:intergenic |
| ATATTGCAGGAATTGCCGGA+AGG | 0.632433 | 1.4:+51299931 | MS.gene47402:CDS |
| ACTTACGTTGAATATTGACA+GGG | 0.701623 | 1.4:-51300169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAAATAAATACAATTT+AGG | + | chr1.4:51300397-51300416 | MS.gene47402:intron | 10.0% |
| !! | TTAAGTTACAAAAAATTAAG+TGG | - | chr1.4:51301099-51301118 | None:intergenic | 15.0% |
| !!! | ATTATAACTAATGGATTAAT+GGG | + | chr1.4:51300551-51300570 | MS.gene47402:intron | 15.0% |
| !!! | ATTTTTTGTAACTTAATTTC+TGG | + | chr1.4:51301103-51301122 | MS.gene47402:intron | 15.0% |
| !!! | TATTATAACTAATGGATTAA+TGG | + | chr1.4:51300550-51300569 | MS.gene47402:intron | 15.0% |
| !!! | TTTTTTGTAACTTAATTTCT+GGG | + | chr1.4:51301104-51301123 | MS.gene47402:intron | 15.0% |
| !! | ATATAGGCTATTATAACTAA+TGG | + | chr1.4:51300542-51300561 | MS.gene47402:intron | 20.0% |
| !! | ATCTTATATCAATCTCATTA+AGG | - | chr1.4:51300092-51300111 | None:intergenic | 20.0% |
| !! | GAAAATGAAGAAGAAATATA+AGG | - | chr1.4:51300204-51300223 | None:intergenic | 20.0% |
| !! | TATTTAATACTTCACAAAGT+GGG | + | chr1.4:51301010-51301029 | MS.gene47402:intron | 20.0% |
| !! | TCTTATATCAATCTCATTAA+GGG | - | chr1.4:51300091-51300110 | None:intergenic | 20.0% |
| !! | TTAATGAGATTGATATAAGA+TGG | + | chr1.4:51300091-51300110 | MS.gene47402:CDS | 20.0% |
| !!! | AATACCAAAATTTTAAGAAG+TGG | - | chr1.4:51300880-51300899 | None:intergenic | 20.0% |
| !!! | AATTTTGGTATTTTTTTCGA+TGG | + | chr1.4:51300888-51300907 | MS.gene47402:intron | 20.0% |
| !!! | ATCATAATTTTATTTGCTCT+TGG | + | chr1.4:51301143-51301162 | MS.gene47402:intron | 20.0% |
| !!! | ATTTTGGTATTTTTTTCGAT+GGG | + | chr1.4:51300889-51300908 | MS.gene47402:intron | 20.0% |
| !!! | CATATTTCAAGTTATGAATA+AGG | + | chr1.4:51300502-51300521 | MS.gene47402:intron | 20.0% |
| ! | AAAATAAATGCATGTTCACA+GGG | + | chr1.4:51300442-51300461 | MS.gene47402:intron | 25.0% |
| ! | ACAAGTACTACTCTTTATAT+AGG | + | chr1.4:51300526-51300545 | MS.gene47402:intron | 25.0% |
| ! | AGCAAATAAAATTATGATGC+AGG | - | chr1.4:51301141-51301160 | None:intergenic | 25.0% |
| ! | CATGATCATAACTTTATGTA+GGG | + | chr1.4:51300223-51300242 | MS.gene47402:intron | 25.0% |
| ! | CTATTTAATACTTCACAAAG+TGG | + | chr1.4:51301009-51301028 | MS.gene47402:intron | 25.0% |
| ! | CTTATATCAATCTCATTAAG+GGG | - | chr1.4:51300090-51300109 | None:intergenic | 25.0% |
| ! | TCATGATCATAACTTTATGT+AGG | + | chr1.4:51300222-51300241 | MS.gene47402:intron | 25.0% |
| ! | TGTTATAAAGAAAAAGCAAG+AGG | + | chr1.4:51300050-51300069 | MS.gene47402:CDS | 25.0% |
| !! | CACAAGAATACATTCTATTT+TGG | + | chr1.4:51299978-51299997 | MS.gene47402:CDS | 25.0% |
| !! | CTTTGTGAAGTATTAAATAG+TGG | - | chr1.4:51301009-51301028 | None:intergenic | 25.0% |
| !!! | AAAATTTTAAGAAGTGGTTG+GGG | - | chr1.4:51300874-51300893 | None:intergenic | 25.0% |
| !!! | AAATTGCTGTTTTGATTAAC+TGG | + | chr1.4:51301193-51301212 | MS.gene47402:intron | 25.0% |
| !!! | AATTGCTGTTTTGATTAACT+GGG | + | chr1.4:51301194-51301213 | MS.gene47402:intron | 25.0% |
| !!! | CAAAATTTTAAGAAGTGGTT+GGG | - | chr1.4:51300875-51300894 | None:intergenic | 25.0% |
| !!! | CTTGGTATTTTTGTTATTGT+TGG | + | chr1.4:51300296-51300315 | MS.gene47402:intron | 25.0% |
| AAAGCAAGAGGATAGATATT+TGG | + | chr1.4:51300062-51300081 | MS.gene47402:CDS | 30.0% | |
| AACTTACGTTGAATATTGAC+AGG | - | chr1.4:51300173-51300192 | None:intergenic | 30.0% | |
| AATATAAAGTGGTCATGGTA+AGG | + | chr1.4:51300912-51300931 | MS.gene47402:intron | 30.0% | |
| AATATCTATCATTCTCAGCT+TGG | + | chr1.4:51300654-51300673 | MS.gene47402:intron | 30.0% | |
| AATCATTTCAAAGCTATTGC+TGG | + | chr1.4:51300681-51300700 | MS.gene47402:intron | 30.0% | |
| ACTTACGTTGAATATTGACA+GGG | - | chr1.4:51300172-51300191 | None:intergenic | 30.0% | |
| ATAAAATTATGATGCAGGCA+AGG | - | chr1.4:51301136-51301155 | None:intergenic | 30.0% | |
| ATAACATCCAAAAGAGATTC+AGG | - | chr1.4:51300036-51300055 | None:intergenic | 30.0% | |
| CAAAATAAATGCATGTTCAC+AGG | + | chr1.4:51300441-51300460 | MS.gene47402:intron | 30.0% | |
| TAACATCCAAAAGAGATTCA+GGG | - | chr1.4:51300035-51300054 | None:intergenic | 30.0% | |
| TGAAGAAGAAATATAAGGAC+AGG | - | chr1.4:51300199-51300218 | None:intergenic | 30.0% | |
| TGTCTTTCTTCATATATTGC+AGG | + | chr1.4:51299918-51299937 | MS.gene47402:CDS | 30.0% | |
| TGTGTCTTGTAGCAATTAAT+GGG | - | chr1.4:51300772-51300791 | None:intergenic | 30.0% | |
| TGTTATAATTGACCTGAACA+GGG | + | chr1.4:51301283-51301302 | MS.gene47402:intron | 30.0% | |
| TTGTGTCTTGTAGCAATTAA+TGG | - | chr1.4:51300773-51300792 | None:intergenic | 30.0% | |
| TTGTTATAATTGACCTGAAC+AGG | + | chr1.4:51301282-51301301 | MS.gene47402:intron | 30.0% | |
| ! | CCAACCACTTCTTAAAATTT+TGG | + | chr1.4:51300873-51300892 | MS.gene47402:intron | 30.0% |
| ! | TTTTCGATGGGAATATAAAG+TGG | + | chr1.4:51300901-51300920 | MS.gene47402:intron | 30.0% |
| !! | AAATTTTAAGAAGTGGTTGG+GGG | - | chr1.4:51300873-51300892 | None:intergenic | 30.0% |
| !! | ATAAGATGGAGACTTGTTAA+TGG | + | chr1.4:51300105-51300124 | MS.gene47402:CDS | 30.0% |
| !! | CCAAAATTTTAAGAAGTGGT+TGG | - | chr1.4:51300876-51300895 | None:intergenic | 30.0% |
| AAGGTTCTTCACATTCAAGA+AGG | - | chr1.4:51301350-51301369 | None:intergenic | 35.0% | |
| AGAAGAAATATAAGGACAGG+CGG | - | chr1.4:51300196-51300215 | None:intergenic | 35.0% | |
| ATGGGAATATAAAGTGGTCA+TGG | + | chr1.4:51300907-51300926 | MS.gene47402:intron | 35.0% | |
| CAAAAAATGGTAGAGATGCT+TGG | + | chr1.4:51300278-51300297 | MS.gene47402:intron | 35.0% | |
| CATATTGGTACCCAATGAAA+AGG | - | chr1.4:51300844-51300863 | None:intergenic | 35.0% | |
| CTTGTTTGTCCCTCAAAAAA+TGG | + | chr1.4:51300265-51300284 | MS.gene47402:intron | 35.0% | |
| GATCATAACTTTATGTAGGG+TGG | + | chr1.4:51300226-51300245 | MS.gene47402:intron | 35.0% | |
| TCATATATTGCAGGAATTGC+CGG | + | chr1.4:51299927-51299946 | MS.gene47402:CDS | 35.0% | |
| !!! | AACTTGATTGGCCTTTTCAT+TGG | + | chr1.4:51300830-51300849 | MS.gene47402:intron | 35.0% |
| !!! | ACTTGATTGGCCTTTTCATT+GGG | + | chr1.4:51300831-51300850 | MS.gene47402:intron | 35.0% |
| !!! | AGCATCTCTACCATTTTTTG+AGG | - | chr1.4:51300278-51300297 | None:intergenic | 35.0% |
| !!! | CATTTTTTGAGGGACAAACA+AGG | - | chr1.4:51300267-51300286 | None:intergenic | 35.0% |
| !!! | GCATCTCTACCATTTTTTGA+GGG | - | chr1.4:51300277-51300296 | None:intergenic | 35.0% |
| !!! | TTTGCTCTTGGTGATGTTTT+TGG | + | chr1.4:51301155-51301174 | MS.gene47402:intron | 35.0% |
| AAGTTCATCTGTGGTATCTG+CGG | + | chr1.4:51300709-51300728 | MS.gene47402:intron | 40.0% | |
| GACTGTACTGCTAACTTGAT+TGG | + | chr1.4:51300818-51300837 | MS.gene47402:intron | 40.0% | |
| GATACCACAGATGAACTTCA+AGG | - | chr1.4:51300707-51300726 | None:intergenic | 40.0% | |
| GATATTCATTCACCAGCTTG+AGG | - | chr1.4:51300640-51300659 | None:intergenic | 40.0% | |
| TTTGGAGAACCTCCTAGTTA+GGG | + | chr1.4:51299996-51300015 | MS.gene47402:CDS | 40.0% | |
| ! | GAAACTCCCTGAATCTCTTT+TGG | + | chr1.4:51300026-51300045 | MS.gene47402:CDS | 40.0% |
| !! | TTTTGGAGAACCTCCTAGTT+AGG | + | chr1.4:51299995-51300014 | MS.gene47402:CDS | 40.0% |
| !!! | TTGTTTTGACGAGTTCCCTT+AGG | + | chr1.4:51301033-51301052 | MS.gene47402:intron | 40.0% |
| AAAGTGGTCATGGTAAGGCT+GGG | + | chr1.4:51300917-51300936 | MS.gene47402:intron | 45.0% | |
| AAGACACAAGAACCGTGGAA+AGG | + | chr1.4:51300784-51300803 | MS.gene47402:intron | 45.0% | |
| AAGTTAGCAGTACAGTCCTC+AGG | - | chr1.4:51300815-51300834 | None:intergenic | 45.0% | |
| AAGTTGCTTCTCCTGAAACC+AGG | + | chr1.4:51300130-51300149 | MS.gene47402:CDS | 45.0% | |
| AGTTCATCTGTGGTATCTGC+GGG | + | chr1.4:51300710-51300729 | MS.gene47402:intron | 45.0% | |
| ATATTGCAGGAATTGCCGGA+AGG | + | chr1.4:51299931-51299950 | MS.gene47402:CDS | 45.0% | |
| CAATGCACGAGAACAGTGTT+TGG | - | chr1.4:51301315-51301334 | None:intergenic | 45.0% | |
| CACTGTTCTCGTGCATTGAA+AGG | + | chr1.4:51301317-51301336 | MS.gene47402:CDS | 45.0% | |
| CATCGCTAAACACGTCCTAA+GGG | - | chr1.4:51301051-51301070 | None:intergenic | 45.0% | |
| GATCACTTATGCCTGTCTCT+GGG | + | chr1.4:51301242-51301261 | MS.gene47402:intron | 45.0% | |
| GTTTCTCAGCTTCCCTAACT+AGG | - | chr1.4:51300011-51300030 | None:intergenic | 45.0% | |
| TAAAGTGGTCATGGTAAGGC+TGG | + | chr1.4:51300916-51300935 | MS.gene47402:intron | 45.0% | |
| TACAACACTTCTCCTCAAGC+TGG | + | chr1.4:51300625-51300644 | MS.gene47402:intron | 45.0% | |
| TATTGCAGGAATTGCCGGAA+GGG | + | chr1.4:51299932-51299951 | MS.gene47402:CDS | 45.0% | |
| TCATCGCTAAACACGTCCTA+AGG | - | chr1.4:51301052-51301071 | None:intergenic | 45.0% | |
| TGATCACTTATGCCTGTCTC+TGG | + | chr1.4:51301241-51301260 | MS.gene47402:intron | 45.0% | |
| AAAAGCAACGGCCTGGTTTC+AGG | - | chr1.4:51300144-51300163 | None:intergenic | 50.0% | |
| AAGTGGTCATGGTAAGGCTG+GGG | + | chr1.4:51300918-51300937 | MS.gene47402:intron | 50.0% | |
| ACAAGAACCGTGGAAAGGTG+AGG | + | chr1.4:51300789-51300808 | MS.gene47402:intron | 50.0% | |
| AGAGTTCACTACCCAGAGAC+AGG | - | chr1.4:51301256-51301275 | None:intergenic | 50.0% | |
| ATTGCAGGAATTGCCGGAAG+GGG | + | chr1.4:51299933-51299952 | MS.gene47402:CDS | 50.0% | |
| CTCGTGCATTGAAAGGCTAG+TGG | + | chr1.4:51301324-51301343 | MS.gene47402:CDS | 50.0% | |
| CTTCAGCAGCTGGTAACACA+AGG | - | chr1.4:51301369-51301388 | None:intergenic | 50.0% | |
| GATTCTGCTTCTTCAGCAGC+TGG | - | chr1.4:51301379-51301398 | None:intergenic | 50.0% | |
| GCTACAAGACACAAGAACCG+TGG | + | chr1.4:51300779-51300798 | MS.gene47402:intron | 50.0% | |
| GTTTGGAAGTAGCCCTGTTC+AGG | - | chr1.4:51301298-51301317 | None:intergenic | 50.0% | |
| TCTCAGCTTCCCTAACTAGG+AGG | - | chr1.4:51300008-51300027 | None:intergenic | 50.0% | |
| !! | CTGGCCTTGAAGTTCATCTG+TGG | + | chr1.4:51300700-51300719 | MS.gene47402:intron | 50.0% |
| !! | TGAAACCAGGCCGTTGCTTT+TGG | + | chr1.4:51300143-51300162 | MS.gene47402:CDS | 50.0% |
| CAACAAAGCCAGTCCCCTTC+CGG | - | chr1.4:51299949-51299968 | None:intergenic | 55.0% | |
| GACAGGGCCTCCAAAAGCAA+CGG | - | chr1.4:51300156-51300175 | None:intergenic | 55.0% | |
| GGTTGGGGGCAGTGACATAT+TGG | - | chr1.4:51300859-51300878 | None:intergenic | 55.0% | |
| TGGTATCTGCGGGCATGCTA+CGG | + | chr1.4:51300720-51300739 | MS.gene47402:intron | 55.0% | |
| ! | GCGGGCATGCTACGGATTTT+TGG | + | chr1.4:51300728-51300747 | MS.gene47402:intron | 55.0% |
| !!! | AACCAGGCCGTTGCTTTTGG+AGG | + | chr1.4:51300146-51300165 | MS.gene47402:CDS | 55.0% |
| AGGAATTGCCGGAAGGGGAC+TGG | + | chr1.4:51299938-51299957 | MS.gene47402:CDS | 60.0% | |
| CCTCAGGCCTCACCTTTCCA+CGG | - | chr1.4:51300799-51300818 | None:intergenic | 60.0% | |
| CCGTGGAAAGGTGAGGCCTG+AGG | + | chr1.4:51300796-51300815 | MS.gene47402:intron | 65.0% | |
| GGCCTCCAAAAGCAACGGCC+TGG | - | chr1.4:51300151-51300170 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 51299892 | 51301405 | 51299892 | ID=MS.gene47402 |
| chr1.4 | mRNA | 51299892 | 51301405 | 51299892 | ID=MS.gene47402.t1;Parent=MS.gene47402 |
| chr1.4 | exon | 51299892 | 51300185 | 51299892 | ID=MS.gene47402.t1.exon1;Parent=MS.gene47402.t1 |
| chr1.4 | CDS | 51299892 | 51300185 | 51299892 | ID=cds.MS.gene47402.t1;Parent=MS.gene47402.t1 |
| chr1.4 | exon | 51301304 | 51301405 | 51301304 | ID=MS.gene47402.t1.exon2;Parent=MS.gene47402.t1 |
| chr1.4 | CDS | 51301304 | 51301405 | 51301304 | ID=cds.MS.gene47402.t1;Parent=MS.gene47402.t1 |
| Gene Sequence |
| Protein sequence |
