AlfalfaGEDB | MS.gene052879

M. sativa cultivar XinJiangDaYe / MS.gene052879

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF01918.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052879.t1	GAU37247.1	93.2	219	15	0	1	219	1	219	3.20E-72	281.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052879.t1	Q99JH1	33.1	136	82	2	1	127	1	136	2.2e-13	77.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052879.t1	A0A2Z6P4F2	93.2	219	15	0	1	219	1	219	2.3e-72	281.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene052879	0.852268	5.16E-61	-1.69E-46
MS.gene049340	MS.gene052879	0.925034	3.17E-90	-1.69E-46
MS.gene049341	MS.gene052879	0.922889	5.46E-89	-1.69E-46
MS.gene050020	MS.gene052879	0.819055	1.42E-52	-1.69E-46
MS.gene050277	MS.gene052879	0.813084	3.06E-51	-1.69E-46
MS.gene050807	MS.gene052879	0.812898	3.36E-51	-1.69E-46
MS.gene051328	MS.gene052879	0.822157	2.75E-53	-1.69E-46
MS.gene05134	MS.gene052879	0.810602	1.06E-50	-1.69E-46
MS.gene05157	MS.gene052879	0.803255	3.80E-49	-1.69E-46
MS.gene052133	MS.gene052879	0.826252	3.00E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052879.t1	MTR_3g095260	99.552	223	1	0	1	223	1	223	3.90e-161	445
MS.gene052879.t1	MTR_3g095240	95.045	222	11	0	1	222	1	222	7.92e-114	325
MS.gene052879.t1	MTR_3g095250	95.429	175	6	1	1	173	1	175	6.92e-104	300
MS.gene052879.t1	MTR_7g059030	66.197	142	48	0	1	142	1	142	8.03e-63	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052879.t1	AT1G76010	77.027	148	33	1	1	147	1	148	5.41e-73	225
MS.gene052879.t1	AT1G76010	77.027	148	33	1	1	147	1	148	5.41e-73	225
MS.gene052879.t1	AT1G20220	72.973	148	39	1	1	147	1	148	1.02e-69	216
MS.gene052879.t1	AT3G07030	65.185	135	47	0	1	135	1	135	1.04e-57	188
MS.gene052879.t1	AT3G07030	65.185	135	47	0	1	135	1	135	1.04e-57	188
MS.gene052879.t1	AT3G07030	65.185	135	47	0	1	135	1	135	1.26e-57	188
MS.gene052879.t1	AT3G07030	65.185	135	47	0	1	135	1	135	2.36e-57	187
MS.gene052879.t1	AT3G07030	65.185	135	47	0	1	135	1	135	2.65e-57	188

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Find 0 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAAAGAATAAGCAAATC+AGG	-	20872:6621-6640	MS.gene052878:intergenic	30.0%
AACTGATATAACTGACACAT+GGG	+	20872:8175-8194	MS.gene052879:CDS	30.0%
AAGATAGAAAACAGAAGTGA+TGG	+	20872:7605-7624	MS.gene052879:intron	30.0%
AATGATTACCGAGCTAATAA+AGG	+	20872:8027-8046	MS.gene052879:CDS	30.0%
ATAGGACGTTAAAATAGCAT+TGG	-	20872:7151-7170	MS.gene052879:intergenic	30.0%
ATGATTGAAACATAGCATCA+TGG	+	20872:7441-7460	MS.gene052879:intron	30.0%
ATTCAATGTCAATACATGCA+TGG	+	20872:6545-6564	MS.gene052879:intron	30.0%
ATTCTTTGGTTGAAATAGCT+TGG	+	20872:6630-6649	MS.gene052879:intron	30.0%
ATTGTGGTTCAATAAAACCT+TGG	-	20872:8780-8799	MS.gene052879:intergenic	30.0%
CAAATGATTTATGTGTGCAT+GGG	+	20872:8256-8275	MS.gene052879:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
20872	gene	6337	9892	6337	ID=MS.gene052879
20872	mRNA	6337	9892	6337	ID=MS.gene052879.t1;Parent=MS.gene052879
20872	exon	6337	6459	6337	ID=MS.gene052879.t1.exon1;Parent=MS.gene052879.t1
20872	CDS	6337	6459	6337	ID=cds.MS.gene052879.t1;Parent=MS.gene052879.t1
20872	exon	7968	8048	7968	ID=MS.gene052879.t1.exon2;Parent=MS.gene052879.t1
20872	CDS	7968	8048	7968	ID=cds.MS.gene052879.t1;Parent=MS.gene052879.t1
20872	exon	8134	8222	8134	ID=MS.gene052879.t1.exon3;Parent=MS.gene052879.t1
20872	CDS	8134	8222	8134	ID=cds.MS.gene052879.t1;Parent=MS.gene052879.t1
20872	exon	8314	8388	8314	ID=MS.gene052879.t1.exon4;Parent=MS.gene052879.t1
20872	CDS	8314	8388	8314	ID=cds.MS.gene052879.t1;Parent=MS.gene052879.t1
20872	exon	9354	9415	9354	ID=MS.gene052879.t1.exon5;Parent=MS.gene052879.t1
20872	CDS	9354	9415	9354	ID=cds.MS.gene052879.t1;Parent=MS.gene052879.t1
20872	exon	9507	9569	9507	ID=MS.gene052879.t1.exon6;Parent=MS.gene052879.t1
20872	CDS	9507	9569	9507	ID=cds.MS.gene052879.t1;Parent=MS.gene052879.t1
20872	exon	9716	9892	9716	ID=MS.gene052879.t1.exon7;Parent=MS.gene052879.t1
20872	CDS	9716	9892	9716	ID=cds.MS.gene052879.t1;Parent=MS.gene052879.t1

Gene Sequence

>MS.gene052879

ATGGATAGGTACCAGAGGGTGGAGAAACCCAAAGCAGATAGTCCTATTAACGAGAATGAGATCCGCATTACCACTCAAGGAAGGATGAGAAACTATATCACTTATGCTACCACTCTTTTCCAAGTTAGTAACAATAACTTAATGTGTTCTTATTATTAGATCATAACAATACATACTTGAAAAAGATCACACAATTCAATTCAATTCAATTCAATGTCAATACATGCATGGGGGTCGTGTTGGTATAAGAAGTGTATGTGTTTTAGAGGTTTCGATTAATGCCTGATTTGCTTATTCTTTGGTTGAAATAGCTTGGATTGGATTAATGCCAAGTGAAATTTGTGTTTTCAGATTTTTTAATACTTCCACATTTTGTTCTATATGCTTTTTGAATAGTCAAAAAAACTATATTTGATACAATACTAGTGTTTGATCCTTGTATCCTTTATACCTTTTTCCTAAACCAAAAATTCAAGTTTTAATAACCCCTTAAAAATTAAAGGGTTAAATATGTTTTCCCTCTAAATATATCACCTTTACGTTTTAGTCCCTTTAAAAATTTCTTTCAATTTTTGGTCCTTTAAACTTTTTGTTTTCAATTTTAGTCCCTGCTTTAGTGTTTTTTTTTTTTTTTACCAATGTTTACGTTTCATGTTCCAAATAACTTCTTTTGTTACATATCATTGATAAGACCAAAAAATATCATTAGTTAATAATCTAACATTTAAACTTAAATTTAACAATTTAATCTTTAACTTGAAATTATAAATAAATCAGTAAAGACTAAAGATTATATAGTTAAATTATTAATCCAATGCTATTTTAACGTCCTATCAGTTATATGTCATAAAAAAATGTCGCTTGGAACACGAAACGTGAACTCTTGTAAAATTGAAATCAGAAAATTTAGAGGACCAAAAATCGAAGGAATTTTTGTAGGGACTAAAACTTAAAGTTGGTATATTTAGAGGAACTATAAACATATTTATTAAATATGTTAGTAATGAATAAAATCTCATATGAATGACTCATAATGTAGTGTCTAGACTTGATAAAAAAAGAGTGCACTGTCTAGAAAGACCGGTCACATTTATATAAAACCAAATGATTGAAACATAGCATCATGGAAAATACAATAAACCTAGACAAGGGTGAATAGAAATACAATATCATGTAAAGAGCCTGGTAAAAGGAGAGTAACAATGAATTTACAAAATCAATAGTGAAAAGAATTTCTTGAAAAAAAAATTTGATGCAAGAGAGAGTCCAAGATAGAAAACAGAAGTGATGGTGACAATCATGAGAAAACAGAGTCCAAGATAGAAATAGACTGTCAGAGCATCTGGTACCATCTTAGGTTTTAGGCCTTAGTCAACTCCACAAAAATGGCATATTAGACACTATCTTCAGTCGTTGTGGGACTTGGTTTTCCCAATATCCTCCCCCATCACTTTCTTATTTTCACTTTAGTCATGTTTTCTCTGTATATTTTCGTTCTTCCGTTGGTTAATGTTTACTTAATAAATTATACAATGATACATGAATGCAAGTATTATTTTATCTAGAATCAACTAATATTTTGCAATTTTTTTCTGACTTTTAATATTGATCAACATGTGTGTTTTCTGTAGGAGAAAGGATCTGATGAAATTGTTGTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTACCGAGCTAATAAAGGTGGGGGGTCGATATCTCTATCCAGTGAATTGGTTGGCATTTTTTTCTGTCTCACTATAGTGACTGCTCTTTCTACTTGTTTCAGAGAAGGATTGTTGGTCTGCATCAGAACACTCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCGTATGGCTTTTTGTTTCCTCTATGCTATCTTGTCAAATGATTTATGTGTGCATGGGTGTGATTGTTTTGGTTTTGTGTTTTACTTGCTCAGTTTGGAGACTACTCGTCATGTTTCAATGATCACAATTACGTTGTCAAAGAAAGAGCTGGATACATCCTCCACAGGGTATGTACTTTCATGATATTGCATGACATCTGTATCTCAAAATTATGCTTGTTAATTAGATGCCTTATCCCTTGATAGGCTTAGTTATTTTTCAAGCAAGCTACTTGATCACTAATCAAGATCGACTTAGTAGTTTGTTTCATAAATTACAAACTTCATGACTACTTGTGCAAAGTTTATTTGTTTTTATAATCAGTACAGCTATAGTCTGCTCAGCATTATTTCCTAGCCGTTGTAATTCTGTAAGATTTGGGGTCACGGCAAAGTGCTAAATATATAGTTAAGAATGGCTTAATTATATTAAATAATTTTTATCTTGCTACAGGTATCTTGATTGAATAATTTTTACAAGCTTTATATAGCTTGTTGAATCAGAATTGAGAAAGGACCAAGGTTTTATTGAACCACAATTTCTGAGCTTTTAAAAATCAGAGTTTTATTTTTTACTTTTTTTTATTTTTTCCTTATCTATCCCCCACCTCACCCGTCTCTTTGTTTTGTGAACACCCCTTTGTCTTTTTAATATCGAACAAAGTGTTGTTTATGTATTTTAGAAACAAGGCGAGTGTGTATAAGTTCATAAAGATTTACTTGAATGTGTTATCTTTGGCATTTGACTATTAATTTGAACTTGATGTACATAAACTACTCTGAGAACTAGTGAATATGTTAGACCTTTGACTTCAAACAGAGCGGTAAACACTATGTCATTCATGCCTCTGTACTTATTTTATCTTTATGGTGTTTATTATTTTGCGCCTTTAGTTTCGCTTTTGATTGCTATTAATGCATTGGTTCAATTAAACATTAAACTCTGTTTTCTGTAATTATTAAGGCCCAGTCATGATTTACAAGTATGGTTGTCTTCTGCGCATTATGTTTTAAATTTAGATATTTTATTTTGATTTTTAATTTTATTCTTTGTTGGCAAGCTCTAAGTTGTGTTTCCTGATTTCCTCATGCAGATATCAACCTCCTCTTCCTGCTGATCAAGTAAAACCTTTGAATGAATATGAAGACGAAGGAGGTTAATTAGTAGTGTTTTTTCTTTTGATGTTTCAGAAGAGTGAAAATGTGTTGTTATGCATGTATAGTTGTTAACTATAATTTTGAAACAGAAGGCTCACCAAGGATGCGAGGAAGGGGAAGGGGTCGTGGAAGGGGCAGGGGTAGAGGTAGAGGTATTGCTTCATACTTTGTTTTGCTTACTTAACTGTAATCGGATGAAGTAAAAATTATAGCGATCAGAAATGCTTTCTTGAACTCTTTTATCGTTACTTTTAAAATAAAAAAATTATCTCATTACTACACAATCTATTCTTTATAGGAATGTACAATGGGGGTATGGAATATGGTGATGGTTGGGATGGTGGACGTGGCTATGGTGGCAGAGGGCGCGTCCGTGCATGGGGTCATGCTTTTCGTGGACGGGGACGGGGCTATGGTGCCCAGCCAGTTGGGCAGTATGACTATGGTGAATATGATGCACCACCTGCACCTCGTG

Protein sequence

>MS.gene052879.t1

MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKTVMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEDEGEGSPRMRGRGRGRGRGRGRGRGMYNGGMEYGDGWDGGRGYGGRGRVRAWGHAFRGRGRGYGAQPVGQYDYGEYDAPPAPR