AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48078

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48078.t1 MTR_5g094450 97.519 524 13 0 1 524 9 532 0.0 1067
MS.gene48078.t1 MTR_3g056110 66.728 541 156 8 1 524 9 542 0.0 715
MS.gene48078.t1 MTR_5g097480 58.195 543 196 8 5 524 10 544 0.0 616
MS.gene48078.t1 MTR_4g133660 54.545 473 207 5 53 523 76 542 1.67e-176 508
MS.gene48078.t1 MTR_2g082090 47.917 528 225 7 37 523 60 578 1.36e-164 479
MS.gene48078.t1 MTR_2g026250 55.670 388 167 3 138 524 213 596 1.72e-154 454
MS.gene48078.t1 MTR_3g089055 50.390 385 186 3 140 524 191 570 5.87e-137 408
MS.gene48078.t1 MTR_3g089055 50.390 385 186 3 140 524 186 565 9.42e-137 407
MS.gene48078.t1 MTR_1g029420 44.421 475 230 6 79 524 123 592 9.56e-135 403
MS.gene48078.t1 MTR_7g027190 36.410 390 220 4 150 524 297 673 8.18e-77 255
MS.gene48078.t1 MTR_8g442410 34.286 385 234 6 149 524 151 525 5.92e-68 228
MS.gene48078.t1 MTR_3g065980 35.696 395 211 10 150 524 169 540 2.01e-66 224
MS.gene48078.t1 MTR_4g064160 31.579 380 247 6 149 523 312 683 2.54e-60 211
MS.gene48078.t1 MTR_4g097080 30.789 380 250 5 151 524 131 503 6.57e-60 206
MS.gene48078.t1 MTR_2g097410 32.987 385 237 9 149 523 367 740 2.23e-59 209
MS.gene48078.t1 MTR_7g062120 30.203 394 261 7 135 524 357 740 3.61e-59 209
MS.gene48078.t1 MTR_7g074650 36.043 369 217 8 157 524 442 792 9.55e-59 208
MS.gene48078.t1 MTR_4g104020 30.928 388 242 7 150 524 146 520 8.59e-58 201
MS.gene48078.t1 MTR_4g064150 32.115 383 245 8 149 523 357 732 4.28e-57 203
MS.gene48078.t1 MTR_3g022830 28.401 419 244 6 154 524 26 436 7.40e-57 196
MS.gene48078.t1 MTR_7g057230 34.211 380 228 10 151 523 292 656 9.80e-56 198
MS.gene48078.t1 MTR_4g102790 32.658 395 230 10 147 523 285 661 2.83e-55 197
MS.gene48078.t1 MTR_4g064200 30.504 377 253 5 149 523 280 649 4.68e-55 196
MS.gene48078.t1 MTR_2g097390 30.890 382 245 9 149 523 271 640 7.76e-55 195
MS.gene48078.t1 MTR_2g097310 30.159 378 253 5 149 523 268 637 1.31e-54 194
MS.gene48078.t1 MTR_4g064120 31.217 378 251 7 149 521 250 623 1.98e-54 194
MS.gene48078.t1 MTR_4g064180 31.398 379 249 7 149 521 250 623 2.43e-54 194
MS.gene48078.t1 MTR_2g097350 31.070 383 243 11 149 523 270 639 2.07e-53 191
MS.gene48078.t1 MTR_6g047750 33.760 391 221 11 151 524 293 662 2.36e-53 191
MS.gene48078.t1 MTR_5g015490 30.526 380 253 6 153 524 114 490 1.99e-51 183
MS.gene48078.t1 MTR_2g097467 29.787 376 256 4 149 523 285 653 8.21e-51 184
MS.gene48078.t1 MTR_2g097473 30.769 377 251 6 149 523 285 653 7.37e-50 182
MS.gene48078.t1 MTR_4g077760 34.358 358 214 9 173 524 213 555 2.94e-49 178
MS.gene48078.t1 MTR_2g097463 29.708 377 255 4 149 523 286 654 1.81e-48 178
MS.gene48078.t1 MTR_1g096030 29.657 408 229 16 150 524 77 459 8.16e-46 167
MS.gene48078.t1 MTR_4g076020 32.432 370 220 9 157 524 88 429 8.31e-46 166
MS.gene48078.t1 MTR_2g089100 25.114 438 296 7 112 523 11 442 1.09e-42 158
MS.gene48078.t1 MTR_2g097380 25.180 417 270 8 110 523 183 560 4.40e-42 159
MS.gene48078.t1 MTR_1g069725 30.170 411 259 13 118 523 75 462 1.59e-41 155
MS.gene48078.t1 MTR_3g072710 28.718 390 255 9 150 523 117 499 3.52e-39 149
MS.gene48078.t1 MTR_2g099110 29.293 396 240 10 152 524 73 451 1.09e-38 147
MS.gene48078.t1 MTR_2g034250 27.366 391 256 9 150 524 207 585 2.82e-37 145
MS.gene48078.t1 MTR_5g058860 29.337 392 248 11 150 523 116 496 2.52e-34 135
MS.gene48078.t1 MTR_5g015950 24.201 438 266 9 139 523 21 445 1.23e-33 133
MS.gene48078.t1 MTR_3g053270 24.201 438 266 9 139 523 21 445 1.23e-33 133
MS.gene48078.t1 MTR_4g095500 24.940 417 265 8 150 523 56 467 1.68e-33 133
MS.gene48078.t1 MTR_2g034280 25.065 387 267 11 150 524 200 575 2.31e-31 128
MS.gene48078.t1 MTR_4g026485 27.056 377 247 10 154 524 270 624 2.68e-31 128
MS.gene48078.t1 MTR_2g034260 25.570 395 257 11 150 524 207 584 6.38e-31 127
MS.gene48078.t1 MTR_5g009080 28.972 214 144 3 150 363 53 258 3.52e-29 120
MS.gene48078.t1 MTR_5g009080 36.879 141 88 1 385 524 338 478 1.18e-23 104
MS.gene48078.t1 MTR_7g109580 26.098 387 258 11 149 524 185 554 7.34e-29 120
MS.gene48078.t1 MTR_4g076140 31.111 225 146 3 138 361 32 248 7.68e-29 119
MS.gene48078.t1 MTR_4g076140 38.298 141 86 1 385 524 329 469 8.65e-26 110
MS.gene48078.t1 MTR_0092s0100 25.201 373 260 7 154 524 376 731 2.64e-28 119
MS.gene48078.t1 MTR_0092s0100 25.201 373 260 7 154 524 373 728 3.12e-28 119
MS.gene48078.t1 MTR_8g093070 26.341 410 267 14 122 523 113 495 9.45e-26 110
MS.gene48078.t1 MTR_8g020840 24.069 403 254 14 151 524 169 548 1.71e-20 95.1
MS.gene48078.t1 MTR_1g086970 24.020 408 273 14 133 524 92 478 5.30e-20 93.2
MS.gene48078.t1 MTR_3g022580 32.727 110 74 0 415 524 74 183 1.65e-15 75.5
MS.gene48078.t1 MTR_8g077940 23.773 387 261 13 149 524 178 541 2.43e-15 79.3
MS.gene48078.t1 MTR_3g022005 36.559 93 59 0 432 524 33 125 1.32e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48078.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene48078.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene48078.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene48078.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene48078.t1 AT1G50600 56.309 531 204 8 5 524 88 601 0.0 565
MS.gene48078.t1 AT1G50600 56.497 531 203 9 5 524 84 597 0.0 565
MS.gene48078.t1 AT1G50600 56.309 531 204 8 5 524 13 526 0.0 564
MS.gene48078.t1 AT2G04890 61.979 384 135 3 141 524 41 413 5.07e-177 504
MS.gene48078.t1 AT4G17230 47.868 516 234 7 29 524 25 525 4.09e-156 456
MS.gene48078.t1 AT4G17230 47.868 516 234 7 29 524 25 525 4.09e-156 456
MS.gene48078.t1 AT1G21450 46.652 448 221 5 91 524 150 593 6.29e-138 411
MS.gene48078.t1 AT1G66350 35.884 379 215 11 150 524 152 506 6.37e-69 230
MS.gene48078.t1 AT3G03450 34.817 382 226 9 150 524 180 545 3.89e-65 221
MS.gene48078.t1 AT1G14920 35.263 380 222 11 150 524 169 529 4.79e-65 220
MS.gene48078.t1 AT1G07530 33.598 378 245 4 148 523 391 764 1.02e-64 224
MS.gene48078.t1 AT2G01570 36.220 381 217 12 150 524 221 581 2.01e-64 220
MS.gene48078.t1 AT5G17490 33.943 383 222 9 150 524 157 516 1.26e-63 216
MS.gene48078.t1 AT2G29060 34.031 382 238 6 149 523 280 654 1.24e-60 211
MS.gene48078.t1 AT2G29060 34.031 382 238 6 149 523 317 691 2.19e-60 211
MS.gene48078.t1 AT5G52510 33.842 393 223 9 151 524 266 640 1.11e-59 208
MS.gene48078.t1 AT3G54220 36.043 369 218 8 157 523 297 649 1.12e-58 206
MS.gene48078.t1 AT5G41920 35.156 384 217 13 150 524 40 400 1.25e-55 192
MS.gene48078.t1 AT3G46600 29.921 381 251 4 150 524 1 371 2.04e-54 188
MS.gene48078.t1 AT1G07520 28.442 443 292 10 100 523 92 528 5.27e-54 191
MS.gene48078.t1 AT1G07520 28.442 443 292 10 100 523 92 528 5.27e-54 191
MS.gene48078.t1 AT3G46600 30.105 382 251 4 149 524 176 547 8.36e-54 191
MS.gene48078.t1 AT3G46600 30.105 382 251 4 149 524 208 579 8.59e-54 191
MS.gene48078.t1 AT1G07520 28.442 443 292 10 100 523 257 693 2.10e-53 192
MS.gene48078.t1 AT5G59450 29.211 380 261 5 149 524 223 598 2.14e-53 191
MS.gene48078.t1 AT1G07520 28.442 443 292 10 100 523 256 692 2.18e-53 192
MS.gene48078.t1 AT5G66770 33.333 381 235 8 150 524 217 584 9.61e-53 188
MS.gene48078.t1 AT2G29065 30.366 382 257 5 149 523 248 627 3.54e-52 187
MS.gene48078.t1 AT2G37650 29.443 377 259 5 149 524 331 701 9.44e-51 185
MS.gene48078.t1 AT2G37650 29.443 377 259 5 149 524 343 713 9.81e-51 185
MS.gene48078.t1 AT3G50650 32.041 387 236 8 149 524 172 542 1.76e-50 181
MS.gene48078.t1 AT1G55580 30.361 415 239 9 150 524 41 445 6.00e-50 178
MS.gene48078.t1 AT1G63100 31.026 390 245 6 149 523 248 628 2.57e-49 180
MS.gene48078.t1 AT1G63100 31.026 390 245 6 149 523 273 653 4.13e-49 179
MS.gene48078.t1 AT4G37650 28.934 394 248 11 153 524 146 529 4.13e-47 172
MS.gene48078.t1 AT4G08250 28.990 307 201 6 225 523 179 476 1.87e-34 135
MS.gene48078.t1 AT3G49950 23.896 385 278 6 150 523 27 407 3.75e-33 130
MS.gene48078.t1 AT1G50420 31.132 212 140 1 150 361 54 259 1.97e-30 124
MS.gene48078.t1 AT1G50420 38.028 142 85 2 385 524 339 479 1.00e-25 110
MS.gene48078.t1 AT3G60630 27.119 354 221 10 186 524 291 622 5.72e-24 106
MS.gene48078.t1 AT2G45160 25.594 379 227 14 169 524 293 639 2.71e-23 104
MS.gene48078.t1 AT4G36710 26.478 389 249 14 149 524 121 485 1.19e-21 98.6
MS.gene48078.t1 AT4G00150 24.557 395 233 15 150 524 205 554 2.40e-20 94.7
MS.gene48078.t1 AT3G13840 24.041 391 254 12 151 524 146 510 2.51e-20 94.7
MS.gene48078.t1 AT5G67411 30.348 201 126 5 272 461 1 198 4.98e-15 74.3

Find 96 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAAATGGTTTCGGTTTC+AGG 0.082618 5.3:-76911045 MS.gene48078:CDS
ATTTGTCCTTACCTCAAATT+TGG 0.139278 5.3:-76910868 MS.gene48078:CDS
TCTTTACTAGTAGCAGTTAT+AGG 0.224168 5.3:+76910922 None:intergenic
GCATTTGAGTTTCATGCTAT+AGG 0.322420 5.3:-76910598 MS.gene48078:CDS
CATTTGAGTTTCATGCTATA+GGG 0.329203 5.3:-76910597 MS.gene48078:CDS
CAATTAATATAAGAGCTTAA+TGG 0.338228 5.3:+76910139 None:intergenic
AACTTCACTTTCATCTTTCA+AGG 0.343048 5.3:+76910813 None:intergenic
AGCAATATCAGAAAATGATA+TGG 0.350309 5.3:-76911097 MS.gene48078:CDS
ATCTGATCCACTCTTGTTAG+AGG 0.352080 5.3:-76911193 MS.gene48078:CDS
TATAGGCTCTTTGCATTTCA+AGG 0.357284 5.3:+76910939 None:intergenic
ATATAAGAGCTTAATGGATA+TGG 0.358531 5.3:+76910145 None:intergenic
AATGTCAGAGTTGTCGAAAA+TGG 0.368522 5.3:-76911058 MS.gene48078:CDS
CTGATCTTCGGCGGTCCTCC+AGG 0.371989 5.3:+76910721 None:intergenic
AAAGATGGTGCTCTTTATCT+TGG 0.376459 5.3:-76910064 MS.gene48078:CDS
ACATGTATGCTCCTAACCTT+TGG 0.380505 5.3:+76911013 None:intergenic
GGAGGAGGACTTGTTATTGT+TGG 0.385168 5.3:-76910658 MS.gene48078:CDS
CAAGCACTTGCTGGAAAACC+TGG 0.390705 5.3:-76910739 MS.gene48078:CDS
CTGACATGTATCCAAATTTG+AGG 0.406987 5.3:+76910857 None:intergenic
GTTGCAAGAATAGCTTCTTC+AGG 0.410550 5.3:-76910979 MS.gene48078:CDS
GACTTGTTATTGTTGGAGAA+AGG 0.425126 5.3:-76910651 MS.gene48078:CDS
TATGCTCCTAACCTTTGGAT+TGG 0.428646 5.3:+76911018 None:intergenic
TCGACGAAACGTGCAAAGAA+TGG 0.431715 5.3:+76910367 None:intergenic
AGTCTAATCCAAGCACTTGC+TGG 0.434105 5.3:-76910748 MS.gene48078:CDS
TGTTCTAAAGCTTGAAATGA+AGG 0.434140 5.3:+76911450 None:intergenic
GGCAAAATGTTTGTCTCCTA+AGG 0.436222 5.3:-76910431 MS.gene48078:CDS
TCTTGTGCCACAAGTCATCT+TGG 0.436674 5.3:+76911301 None:intergenic
GACTATTGTTAGAAGATTCA+AGG 0.438602 5.3:+76911424 None:intergenic
ATCCTTTCTCTGTGCTCCCT+TGG 0.438790 5.3:+76910295 None:intergenic
ATGGTGCTCTTTATCTTGGT+TGG 0.450648 5.3:-76910060 MS.gene48078:CDS
AGATCATGTTTCACAATGGC+TGG 0.452840 5.3:-76910175 MS.gene48078:CDS
CTTGTAGAGTATAATGTCCT+TGG 0.456322 5.3:+76910089 None:intergenic
AAACCGGTTATTCTGATCTT+CGG 0.458599 5.3:+76910709 None:intergenic
CTCTTATTACCTCTAGTGCT+TGG 0.460840 5.3:-76910027 MS.gene48078:CDS
GGAAATCCAATCCAAAGGTT+AGG 0.465445 5.3:-76911024 MS.gene48078:CDS
AGAGTTGTCGAAAATGGTTT+CGG 0.470075 5.3:-76911052 MS.gene48078:CDS
TTATTACCTCTAGTGCTTGG+AGG 0.473858 5.3:-76910024 MS.gene48078:CDS
CTTCACCACGACGAAGTTCA+AGG 0.477100 5.3:+76910545 None:intergenic
TCGCGATCGATTAGTGAGAT+TGG 0.480871 5.3:-76910452 MS.gene48078:CDS
CCGCCGAAGATCAGAATAAC+CGG 0.481757 5.3:-76910712 MS.gene48078:CDS
TGCCAAGGGAGCACAGAGAA+AGG 0.488020 5.3:-76910297 MS.gene48078:CDS
TATGAGTCTAGATCTTGTAT+AGG 0.488577 5.3:+76911540 None:intergenic
TCAGCTTATGCTAGGGGAGG+AGG 0.490751 5.3:-76910673 MS.gene48078:CDS
CAATTGATGTTGCTTTGCCA+AGG 0.496515 5.3:-76910312 MS.gene48078:CDS
TCAACAAGAGTCACTACCTT+AGG 0.498490 5.3:+76910415 None:intergenic
GAAATGAAGGGTAGGTTGAA+TGG 0.500307 5.3:+76911463 None:intergenic
TTTGGATACATGTCAGCAAA+TGG 0.500743 5.3:-76910850 MS.gene48078:CDS
AATCTCTTTCAAATCCCCTC+TGG 0.501280 5.3:+76911137 None:intergenic
TGAAGTTGAGTCATCAAAAC+CGG 0.501919 5.3:+76910693 None:intergenic
TAATGTGGAACAGCATTGCT+TGG 0.522983 5.3:-76910272 MS.gene48078:CDS
TGAATCTTCTAACAATAGTC+CGG 0.523182 5.3:-76911421 MS.gene48078:CDS
AACTACTCATCTTCTGATAA+CGG 0.524904 5.3:-76911489 MS.gene48078:CDS
ACTCAACTTCAGCTTATGCT+AGG 0.530700 5.3:-76910681 MS.gene48078:CDS
CTCAACTTCAGCTTATGCTA+GGG 0.532037 5.3:-76910680 MS.gene48078:CDS
GAGCTTGAAAATGCTATGCT+AGG 0.532196 5.3:-76911273 MS.gene48078:CDS
GCACATCTTCATCCGGTACA+TGG 0.535079 5.3:+76910491 None:intergenic
CCACCATGCACATCTTCATC+CGG 0.542699 5.3:+76910484 None:intergenic
CAAGCACTAGAGGTAATAAG+AGG 0.548387 5.3:+76910028 None:intergenic
CATGATGCTGCACCATGTAC+CGG 0.549165 5.3:-76910503 MS.gene48078:CDS
ATGTATCCAAATTTGAGGTA+AGG 0.552106 5.3:+76910862 None:intergenic
CGGTACATGGTGCAGCATCA+TGG 0.552726 5.3:+76910504 None:intergenic
TTTGACTGTAGCTTCGAGAC+CGG 0.552976 5.3:+76911402 None:intergenic
ATTTGAGTTTCATGCTATAG+GGG 0.555615 5.3:-76910596 MS.gene48078:CDS
ACTATTGTTAGAAGATTCAA+GGG 0.562160 5.3:+76911425 None:intergenic
GTCACGAGGTTCTGAAGAAG+TGG 0.562877 5.3:-76910198 MS.gene48078:CDS
TCTTCAAGTCTCACCTCAGA+AGG 0.563852 5.3:+76910568 None:intergenic
ATGATATGGAAACAGCTGAA+TGG 0.565722 5.3:-76911083 MS.gene48078:CDS
GTTCTAAAGCTTGAAATGAA+GGG 0.567885 5.3:+76911451 None:intergenic
AATTGATGTTGCTTTGCCAA+GGG 0.571262 5.3:-76910311 MS.gene48078:CDS
TGCAAAGAATGGAAGCTCGT+TGG 0.585649 5.3:+76910378 None:intergenic
TAAAGCTTGAAATGAAGGGT+AGG 0.588089 5.3:+76911455 None:intergenic
GTCAATTTAGTAGCGTGTGA+AGG 0.591391 5.3:-76910238 MS.gene48078:CDS
AGATTAATCAGGGAATTCAG+TGG 0.595212 5.3:-76910774 MS.gene48078:CDS
TTCTCTGCCTCTAACAAGAG+TGG 0.596842 5.3:+76911186 None:intergenic
TGATTGAGATGATATCCAGA+GGG 0.598119 5.3:-76911152 MS.gene48078:CDS
GCATTGCTTGGCTCGCGAAG+TGG 0.604747 5.3:-76910260 MS.gene48078:CDS
TATACTCTACAAGAGAAAGA+TGG 0.606593 5.3:-76910079 MS.gene48078:CDS
TCGTCGTGGTGAAGCTATTG+CGG 0.619071 5.3:-76910536 MS.gene48078:CDS
TTTCAGGAAATCCAATCCAA+AGG 0.621360 5.3:-76911029 MS.gene48078:CDS
GTATCACCTCCAAGCACTAG+AGG 0.626501 5.3:+76910018 None:intergenic
CACATAACCAAGATGACTTG+TGG 0.627441 5.3:-76911308 MS.gene48078:CDS
TCTTGTTAGAGGCAGAGAAG+TGG 0.627727 5.3:-76911182 MS.gene48078:CDS
GCACAGAGAAAGGATTAATG+TGG 0.636528 5.3:-76910287 MS.gene48078:CDS
AAGGTTAGGAGCATACATGT+TGG 0.640121 5.3:-76911010 MS.gene48078:CDS
TATAGGGGCTAGTCCTTCTG+AGG 0.643175 5.3:-76910581 MS.gene48078:CDS
CCGGTTATTCTGATCTTCGG+CGG 0.646295 5.3:+76910712 None:intergenic
ACTTCAGCTTATGCTAGGGG+AGG 0.652120 5.3:-76910676 MS.gene48078:CDS
TCAACTTCAGCTTATGCTAG+GGG 0.673617 5.3:-76910679 MS.gene48078:CDS
AGAGAGAGTTGAACGTCACG+AGG 0.678622 5.3:-76910212 MS.gene48078:CDS
ATGATTGAGATGATATCCAG+AGG 0.679838 5.3:-76911153 MS.gene48078:CDS
GAAGACCTTGAACTTCGTCG+TGG 0.689434 5.3:-76910550 MS.gene48078:CDS
AATCTTCTAGAAAATTACCA+AGG 0.696750 5.3:-76910106 MS.gene48078:CDS
GTGGAGATCATGTTTCACAA+TGG 0.702263 5.3:-76910179 MS.gene48078:CDS
GCACTTGCTGGAAAACCTGG+AGG 0.713946 5.3:-76910736 MS.gene48078:CDS
GTACCGGATGAAGATGTGCA+TGG 0.723566 5.3:-76910487 MS.gene48078:CDS
GATTGAGATGATATCCAGAG+GGG 0.733440 5.3:-76911151 MS.gene48078:CDS
CCGGATGAAGATGTGCATGG+TGG 0.766036 5.3:-76910484 MS.gene48078:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTAATATAAGAGCTTAA+TGG + chr5.3:76911458-76911477 None:intergenic 20.0%
!!! AATTGATTTTCAGATTAATC+AGG - chr5.3:76910809-76910828 MS.gene48078:CDS 20.0%
!!! ATTGATTTTCAGATTAATCA+GGG - chr5.3:76910810-76910829 MS.gene48078:CDS 20.0%
! ACTATTGTTAGAAGATTCAA+GGG + chr5.3:76910172-76910191 None:intergenic 25.0%
! AGCAATATCAGAAAATGATA+TGG - chr5.3:76910497-76910516 MS.gene48078:CDS 25.0%
!! AATCTTCTAGAAAATTACCA+AGG - chr5.3:76911488-76911507 MS.gene48078:CDS 25.0%
!! ATATAAGAGCTTAATGGATA+TGG + chr5.3:76911452-76911471 None:intergenic 25.0%
AACTACTCATCTTCTGATAA+CGG - chr5.3:76910105-76910124 MS.gene48078:CDS 30.0%
AACTTCACTTTCATCTTTCA+AGG + chr5.3:76910784-76910803 None:intergenic 30.0%
ATTTGTCCTTACCTCAAATT+TGG - chr5.3:76910726-76910745 MS.gene48078:CDS 30.0%
GACTATTGTTAGAAGATTCA+AGG + chr5.3:76910173-76910192 None:intergenic 30.0%
TATACTCTACAAGAGAAAGA+TGG - chr5.3:76911515-76911534 MS.gene48078:CDS 30.0%
TATGAGTCTAGATCTTGTAT+AGG + chr5.3:76910057-76910076 None:intergenic 30.0%
TCTTTACTAGTAGCAGTTAT+AGG + chr5.3:76910675-76910694 None:intergenic 30.0%
TGAATCTTCTAACAATAGTC+CGG - chr5.3:76910173-76910192 MS.gene48078:CDS 30.0%
! ATGTATCCAAATTTGAGGTA+AGG + chr5.3:76910735-76910754 None:intergenic 30.0%
! ATTTGAGTTTCATGCTATAG+GGG - chr5.3:76910998-76911017 MS.gene48078:CDS 30.0%
! CATTTGAGTTTCATGCTATA+GGG - chr5.3:76910997-76911016 MS.gene48078:CDS 30.0%
!! GTTCTAAAGCTTGAAATGAA+GGG + chr5.3:76910146-76910165 None:intergenic 30.0%
!! TGTTCTAAAGCTTGAAATGA+AGG + chr5.3:76910147-76910166 None:intergenic 30.0%
!! TTTCGAGATTCTCATTTTTC+AGG + chr5.3:76910086-76910105 None:intergenic 30.0%
AAACCGGTTATTCTGATCTT+CGG + chr5.3:76910888-76910907 None:intergenic 35.0%
AAAGATGGTGCTCTTTATCT+TGG - chr5.3:76911530-76911549 MS.gene48078:CDS 35.0%
AATGTCAGAGTTGTCGAAAA+TGG - chr5.3:76910536-76910555 MS.gene48078:CDS 35.0%
AGAGTTGTCGAAAATGGTTT+CGG - chr5.3:76910542-76910561 MS.gene48078:CDS 35.0%
AGATTAATCAGGGAATTCAG+TGG - chr5.3:76910820-76910839 MS.gene48078:CDS 35.0%
ATGATATGGAAACAGCTGAA+TGG - chr5.3:76910511-76910530 MS.gene48078:CDS 35.0%
ATGATTGAGATGATATCCAG+AGG - chr5.3:76910441-76910460 MS.gene48078:CDS 35.0%
CTGACATGTATCCAAATTTG+AGG + chr5.3:76910740-76910759 None:intergenic 35.0%
CTTGTAGAGTATAATGTCCT+TGG + chr5.3:76911508-76911527 None:intergenic 35.0%
TAAAGCTTGAAATGAAGGGT+AGG + chr5.3:76910142-76910161 None:intergenic 35.0%
TATAGGCTCTTTGCATTTCA+AGG + chr5.3:76910658-76910677 None:intergenic 35.0%
TGAAGTTGAGTCATCAAAAC+CGG + chr5.3:76910904-76910923 None:intergenic 35.0%
TGATTGAGATGATATCCAGA+GGG - chr5.3:76910442-76910461 MS.gene48078:CDS 35.0%
TTTCAGGAAATCCAATCCAA+AGG - chr5.3:76910565-76910584 MS.gene48078:CDS 35.0%
TTTGGATACATGTCAGCAAA+TGG - chr5.3:76910744-76910763 MS.gene48078:CDS 35.0%
! GCATTTGAGTTTCATGCTAT+AGG - chr5.3:76910996-76911015 MS.gene48078:CDS 35.0%
!! AATTGATGTTGCTTTGCCAA+GGG - chr5.3:76911283-76911302 MS.gene48078:CDS 35.0%
!! GACTTGTTATTGTTGGAGAA+AGG - chr5.3:76910943-76910962 MS.gene48078:CDS 35.0%
AATCTCTTTCAAATCCCCTC+TGG + chr5.3:76910460-76910479 None:intergenic 40.0%
ACATGTATGCTCCTAACCTT+TGG + chr5.3:76910584-76910603 None:intergenic 40.0%
ACTCAACTTCAGCTTATGCT+AGG - chr5.3:76910913-76910932 MS.gene48078:CDS 40.0%
AGATCATGTTTCACAATGGC+TGG - chr5.3:76911419-76911438 MS.gene48078:CDS 40.0%
ATCTGATCCACTCTTGTTAG+AGG - chr5.3:76910401-76910420 MS.gene48078:CDS 40.0%
ATGGTGCTCTTTATCTTGGT+TGG - chr5.3:76911534-76911553 MS.gene48078:CDS 40.0%
CAAGCACTAGAGGTAATAAG+AGG + chr5.3:76911569-76911588 None:intergenic 40.0%
CACATAACCAAGATGACTTG+TGG - chr5.3:76910286-76910305 MS.gene48078:CDS 40.0%
CTCAACTTCAGCTTATGCTA+GGG - chr5.3:76910914-76910933 MS.gene48078:CDS 40.0%
CTCTTATTACCTCTAGTGCT+TGG - chr5.3:76911567-76911586 MS.gene48078:CDS 40.0%
GAGCTTGAAAATGCTATGCT+AGG - chr5.3:76910321-76910340 MS.gene48078:CDS 40.0%
GATTGAGATGATATCCAGAG+GGG - chr5.3:76910443-76910462 MS.gene48078:CDS 40.0%
GCACAGAGAAAGGATTAATG+TGG - chr5.3:76911307-76911326 MS.gene48078:CDS 40.0%
GGAAATCCAATCCAAAGGTT+AGG - chr5.3:76910570-76910589 MS.gene48078:CDS 40.0%
GGCAAAATGTTTGTCTCCTA+AGG - chr5.3:76911163-76911182 MS.gene48078:CDS 40.0%
GTCAATTTAGTAGCGTGTGA+AGG - chr5.3:76911356-76911375 MS.gene48078:CDS 40.0%
GTGGAGATCATGTTTCACAA+TGG - chr5.3:76911415-76911434 MS.gene48078:CDS 40.0%
GTTGCAAGAATAGCTTCTTC+AGG - chr5.3:76910615-76910634 MS.gene48078:CDS 40.0%
TAATGTGGAACAGCATTGCT+TGG - chr5.3:76911322-76911341 MS.gene48078:CDS 40.0%
TATGCTCCTAACCTTTGGAT+TGG + chr5.3:76910579-76910598 None:intergenic 40.0%
TCAACAAGAGTCACTACCTT+AGG + chr5.3:76911182-76911201 None:intergenic 40.0%
TCAACTTCAGCTTATGCTAG+GGG - chr5.3:76910915-76910934 MS.gene48078:CDS 40.0%
TCGAAAATGGTTTCGGTTTC+AGG - chr5.3:76910549-76910568 MS.gene48078:CDS 40.0%
TTATTACCTCTAGTGCTTGG+AGG - chr5.3:76911570-76911589 MS.gene48078:CDS 40.0%
! AAGGTTAGGAGCATACATGT+TGG - chr5.3:76910584-76910603 MS.gene48078:CDS 40.0%
! GAAATGAAGGGTAGGTTGAA+TGG + chr5.3:76910134-76910153 None:intergenic 40.0%
!! CAATTGATGTTGCTTTGCCA+AGG - chr5.3:76911282-76911301 MS.gene48078:CDS 40.0%
AGTCTAATCCAAGCACTTGC+TGG - chr5.3:76910846-76910865 MS.gene48078:CDS 45.0%
TCGACGAAACGTGCAAAGAA+TGG + chr5.3:76911230-76911249 None:intergenic 45.0%
TCGCGATCGATTAGTGAGAT+TGG - chr5.3:76911142-76911161 MS.gene48078:CDS 45.0%
TCTTCAAGTCTCACCTCAGA+AGG + chr5.3:76911029-76911048 None:intergenic 45.0%
TCTTGTGCCACAAGTCATCT+TGG + chr5.3:76910296-76910315 None:intergenic 45.0%
TCTTGTTAGAGGCAGAGAAG+TGG - chr5.3:76910412-76910431 MS.gene48078:CDS 45.0%
TGCAAAGAATGGAAGCTCGT+TGG + chr5.3:76911219-76911238 None:intergenic 45.0%
TTCTCTGCCTCTAACAAGAG+TGG + chr5.3:76910411-76910430 None:intergenic 45.0%
TTTGACTGTAGCTTCGAGAC+CGG + chr5.3:76910195-76910214 None:intergenic 45.0%
!! GGAGGAGGACTTGTTATTGT+TGG - chr5.3:76910936-76910955 MS.gene48078:CDS 45.0%
ACTTCAGCTTATGCTAGGGG+AGG - chr5.3:76910918-76910937 MS.gene48078:CDS 50.0%
AGAGAGAGTTGAACGTCACG+AGG - chr5.3:76911382-76911401 MS.gene48078:CDS 50.0%
ATCCTTTCTCTGTGCTCCCT+TGG + chr5.3:76911302-76911321 None:intergenic 50.0%
CATGATGCTGCACCATGTAC+CGG - chr5.3:76911091-76911110 MS.gene48078:CDS 50.0%
CCACCATGCACATCTTCATC+CGG + chr5.3:76911113-76911132 None:intergenic 50.0%
CCGCCGAAGATCAGAATAAC+CGG - chr5.3:76910882-76910901 MS.gene48078:CDS 50.0%
CCGGTTATTCTGATCTTCGG+CGG + chr5.3:76910885-76910904 None:intergenic 50.0%
CTTCACCACGACGAAGTTCA+AGG + chr5.3:76911052-76911071 None:intergenic 50.0%
GAAGACCTTGAACTTCGTCG+TGG - chr5.3:76911044-76911063 MS.gene48078:CDS 50.0%
GCACATCTTCATCCGGTACA+TGG + chr5.3:76911106-76911125 None:intergenic 50.0%
GTACCGGATGAAGATGTGCA+TGG - chr5.3:76911107-76911126 MS.gene48078:CDS 50.0%
TCGTCGTGGTGAAGCTATTG+CGG - chr5.3:76911058-76911077 MS.gene48078:CDS 50.0%
! CAAGCACTTGCTGGAAAACC+TGG - chr5.3:76910855-76910874 MS.gene48078:CDS 50.0%
! CAGGTTTTCCAGCAAGTGCT+TGG + chr5.3:76910857-76910876 None:intergenic 50.0%
!! GTCACGAGGTTCTGAAGAAG+TGG - chr5.3:76911396-76911415 MS.gene48078:CDS 50.0%
!! TATAGGGGCTAGTCCTTCTG+AGG - chr5.3:76911013-76911032 MS.gene48078:CDS 50.0%
CCGGATGAAGATGTGCATGG+TGG - chr5.3:76911110-76911129 MS.gene48078:CDS 55.0%
CGGTACATGGTGCAGCATCA+TGG + chr5.3:76911093-76911112 None:intergenic 55.0%
TCAGCTTATGCTAGGGGAGG+AGG - chr5.3:76910921-76910940 MS.gene48078:CDS 55.0%
! GCACTTGCTGGAAAACCTGG+AGG - chr5.3:76910858-76910877 MS.gene48078:CDS 55.0%
! TGCCAAGGGAGCACAGAGAA+AGG - chr5.3:76911297-76911316 MS.gene48078:CDS 55.0%
! GCATTGCTTGGCTCGCGAAG+TGG - chr5.3:76911334-76911353 MS.gene48078:CDS 60.0%
CTGATCTTCGGCGGTCCTCC+AGG + chr5.3:76910876-76910895 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 76910021 76911595 76910021 ID=MS.gene48078
chr5.3 mRNA 76910021 76911595 76910021 ID=MS.gene48078.t1;Parent=MS.gene48078
chr5.3 exon 76910021 76911595 76910021 ID=MS.gene48078.t1.exon1;Parent=MS.gene48078.t1
chr5.3 CDS 76910021 76911595 76910021 ID=cds.MS.gene48078.t1;Parent=MS.gene48078.t1
Gene Sequence

>MS.gene48078

ATGTCATATGATTCTAGCATGTTCAGCATTGAGCCTATACAAGATCTAGACTCATATTGCTTCCTGAAAAATGAGAATCTCGAAAACTACTCATCTTCTGATAACGGTAGCCATTCAACCTACCCTTCATTTCAAGCTTTAGAACAAACCCTTGAATCTTCTAACAATAGTCCGGTCTCGAAGCTACAGTCAAAATCTTACACGTTCACGTCACGAAACTCTCTTGAAATTATCAATGATTCTTTAGAGAATGAATCTTGCTTGACACATAACCAAGATGACTTGTGGCACAAGATAAGAGAGCTTGAAAATGCTATGCTAGGACATGATGCTGCAGATATGCTAGACATTTATAATGATGCTGTAATAATTCAACAAGAATCTGATCCACTCTTGTTAGAGGCAGAGAAGTGGAACAAAATGATTGAGATGATATCCAGAGGGGATTTGAAAGAGATTCTTTTTACATGTGCAAAAGCAATATCAGAAAATGATATGGAAACAGCTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCAGGAAATCCAATCCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCAGGAAGCATAATATACAAATCCTTGAAATGCAAAGAGCCTATAACTGCTACTAGTAAAGAACTACTCTCACACATGCATGTGCTTTATGAAATTTGTCCTTACCTCAAATTTGGATACATGTCAGCAAATGGTGTAATTGCTGAAGCCTTGAAAGATGAAAGTGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAATTCAGTGGATGAGTCTAATCCAAGCACTTGCTGGAAAACCTGGAGGACCGCCGAAGATCAGAATAACCGGTTTTGATGACTCAACTTCAGCTTATGCTAGGGGAGGAGGACTTGTTATTGTTGGAGAAAGGTTGTCAAAACTTGCACAGTCATATAATGTAGCATTTGAGTTTCATGCTATAGGGGCTAGTCCTTCTGAGGTGAGACTTGAAGACCTTGAACTTCGTCGTGGTGAAGCTATTGCGGTGAATTTTGCCATGATGCTGCACCATGTACCGGATGAAGATGTGCATGGTGGTAAGAATCATCGCGATCGATTAGTGAGATTGGCAAAATGTTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAACGAGCTTCCATTCTTTGCACGTTTCGTCGAGACAATGAACTACTACTTCGCAGTTTTTGAATCAATTGATGTTGCTTTGCCAAGGGAGCACAGAGAAAGGATTAATGTGGAACAGCATTGCTTGGCTCGCGAAGTGGTCAATTTAGTAGCGTGTGAAGGCGCAGAGAGAGTTGAACGTCACGAGGTTCTGAAGAAGTGGAGATCATGTTTCACAATGGCTGGATTCACACCATATCCATTAAGCTCTTATATTAATTGTTCAATACAAAATCTTCTAGAAAATTACCAAGGACATTATACTCTACAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAACCTCTTATTACCTCTAGTGCTTGGAGGTGA
Protein sequence

>MS.gene48078.t1

MSYDSSMFSIEPIQDLDSYCFLKNENLENYSSSDNGSHSTYPSFQALEQTLESSNNSPVSKLQSKSYTFTSRNSLEIINDSLENESCLTHNQDDLWHKIRELENAMLGHDAADMLDIYNDAVIIQQESDPLLLEAEKWNKMIEMISRGDLKEILFTCAKAISENDMETAEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPITATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDESEVHIIDFQINQGIQWMSLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLVIVGERLSKLAQSYNVAFEFHAIGASPSEVRLEDLELRRGEAIAVNFAMMLHHVPDEDVHGGKNHRDRLVRLAKCLSPKVVTLVEQESNTNELPFFARFVETMNYYFAVFESIDVALPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWRSCFTMAGFTPYPLSSYINCSIQNLLENYQGHYTLQEKDGALYLGWMNQPLITSSAWR