Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48377.t1 | KEH31843.1 | 84.1 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 4.50E-120 | 440.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48377.t1 | Q9FJJ3 | 34.7 | 222 | 91 | 5 | 68 | 242 | 70 | 284 | 6.2e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48377.t1 | A0A072UPT7 | 84.1 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 3.3e-120 | 440.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene48377 | 0.836429 | 9.41E-57 | -1.69E-46 |
| MS.gene049983 | MS.gene48377 | 0.801218 | 9.99E-49 | -1.69E-46 |
| MS.gene04998 | MS.gene48377 | 0.80328 | 3.76E-49 | -1.69E-46 |
| MS.gene050084 | MS.gene48377 | 0.825322 | 4.99E-54 | -1.69E-46 |
| MS.gene050085 | MS.gene48377 | 0.827729 | 1.33E-54 | -1.69E-46 |
| MS.gene050359 | MS.gene48377 | 0.846932 | 1.59E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene48377 | 0.820405 | 6.98E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene48377 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene051184 | MS.gene48377 | 0.813598 | 2.36E-51 | -1.69E-46 |
| MS.gene053215 | MS.gene48377 | 0.81199 | 5.31E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene48377 | 0.802062 | 6.70E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene48377 | 0.843399 | 1.44E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene48377 | 0.847452 | 1.15E-59 | -1.69E-46 |
| MS.gene05615 | MS.gene48377 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene057093 | MS.gene48377 | 0.802816 | 4.69E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene48377 | 0.81717 | 3.79E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene48377 | 0.844529 | 7.15E-59 | -1.69E-46 |
| MS.gene058095 | MS.gene48377 | 0.822016 | 2.97E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene48377 | 0.816231 | 6.15E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene48377 | 0.830136 | 3.48E-55 | -1.69E-46 |
| MS.gene059007 | MS.gene48377 | 0.826987 | 2.01E-54 | -1.69E-46 |
| MS.gene05952 | MS.gene48377 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene48377 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene48377 | 0.824733 | 6.88E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48377.t1 | MTR_4g105740 | 84.133 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 5.48e-164 | 456 |
| MS.gene48377.t1 | MTR_4g105740 | 84.133 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 1.50e-163 | 455 |
| MS.gene48377.t1 | MTR_3g077870 | 40.000 | 280 | 114 | 7 | 13 | 242 | 15 | 290 | 6.58e-57 | 184 |
| MS.gene48377.t1 | MTR_8g088250 | 31.381 | 239 | 114 | 5 | 43 | 235 | 19 | 253 | 1.03e-30 | 115 |
| MS.gene48377.t1 | MTR_1g112330 | 29.008 | 262 | 110 | 7 | 46 | 235 | 273 | 530 | 2.15e-25 | 104 |
| MS.gene48377.t1 | MTR_1g112330 | 28.679 | 265 | 110 | 7 | 46 | 235 | 273 | 533 | 4.88e-25 | 103 |
| MS.gene48377.t1 | MTR_5g032190 | 37.013 | 154 | 65 | 2 | 114 | 235 | 373 | 526 | 2.30e-24 | 101 |
| MS.gene48377.t1 | MTR_1g112330 | 33.696 | 184 | 75 | 5 | 46 | 186 | 273 | 452 | 4.13e-24 | 100 |
| MS.gene48377.t1 | MTR_5g032190 | 55.556 | 72 | 32 | 0 | 114 | 185 | 373 | 444 | 1.66e-22 | 95.9 |
| MS.gene48377.t1 | MTR_5g032190 | 55.556 | 72 | 32 | 0 | 114 | 185 | 373 | 444 | 1.84e-22 | 95.9 |
| MS.gene48377.t1 | MTR_5g029580 | 32.237 | 152 | 79 | 2 | 106 | 233 | 163 | 314 | 5.31e-22 | 93.6 |
| MS.gene48377.t1 | MTR_7g011550 | 30.939 | 181 | 78 | 4 | 46 | 182 | 249 | 426 | 7.92e-20 | 88.2 |
| MS.gene48377.t1 | MTR_7g011880 | 33.333 | 111 | 66 | 2 | 114 | 220 | 60 | 166 | 3.16e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48377.t1 | AT5G62520 | 34.685 | 222 | 91 | 5 | 68 | 242 | 70 | 284 | 3.53e-32 | 119 |
| MS.gene48377.t1 | AT1G23550 | 30.213 | 235 | 113 | 3 | 48 | 235 | 56 | 286 | 3.46e-31 | 117 |
| MS.gene48377.t1 | AT3G47720 | 34.685 | 222 | 88 | 7 | 68 | 242 | 78 | 289 | 2.16e-28 | 110 |
| MS.gene48377.t1 | AT1G70440 | 39.669 | 121 | 65 | 2 | 115 | 235 | 162 | 274 | 3.38e-24 | 98.6 |
| MS.gene48377.t1 | AT1G70440 | 39.669 | 121 | 65 | 2 | 115 | 235 | 162 | 274 | 3.38e-24 | 98.6 |
| MS.gene48377.t1 | AT1G32230 | 33.136 | 169 | 78 | 2 | 102 | 235 | 369 | 537 | 5.52e-24 | 100 |
| MS.gene48377.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.46e-23 | 98.6 |
| MS.gene48377.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene48377.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene48377.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene48377.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene48377.t1 | AT5G62520 | 33.962 | 159 | 61 | 3 | 68 | 182 | 70 | 228 | 4.64e-22 | 91.7 |
| MS.gene48377.t1 | AT2G35510 | 43.373 | 83 | 47 | 0 | 102 | 184 | 363 | 445 | 4.66e-20 | 89.0 |
| MS.gene48377.t1 | AT2G35510 | 43.373 | 83 | 47 | 0 | 102 | 184 | 363 | 445 | 5.64e-20 | 89.0 |
| MS.gene48377.t1 | AT2G35510 | 43.373 | 83 | 47 | 0 | 102 | 184 | 363 | 445 | 5.64e-20 | 89.0 |
Find 67 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACTCATAACATATTC+AGG | 0.280626 | 8.3:+17159836 | None:intergenic |
| ACTCCAAACAATGAACTCTT+TGG | 0.300883 | 8.3:+17159883 | None:intergenic |
| AAACGAATCTGCTTCGGATT+AGG | 0.308031 | 8.3:+17160491 | None:intergenic |
| TCGTGTGATCATGGGAAAAT+TGG | 0.321394 | 8.3:-17159984 | MS.gene48377:CDS |
| CCAAGTTTCACAAGGAGTAT+AGG | 0.324583 | 8.3:-17159585 | MS.gene48377:CDS |
| CTCCCAAAGAGTTCATTGTT+TGG | 0.353473 | 8.3:-17159886 | MS.gene48377:CDS |
| AGAGTCGGGAATTGCATAAA+AGG | 0.360107 | 8.3:+17159658 | None:intergenic |
| CAAGTTTCACAAGGAGTATA+GGG | 0.369249 | 8.3:-17159584 | MS.gene48377:CDS |
| CCTATACTCCTTGTGAAACT+TGG | 0.373522 | 8.3:+17159585 | None:intergenic |
| AGTTCAGAAGAATATGATTC+TGG | 0.386842 | 8.3:-17159926 | MS.gene48377:CDS |
| CAAGTACACACTACCTTTGT+CGG | 0.405137 | 8.3:+17159805 | None:intergenic |
| CTCCAAACAATGAACTCTTT+GGG | 0.417033 | 8.3:+17159884 | None:intergenic |
| TAGGGTAAGTGTTTCGGACT+TGG | 0.417634 | 8.3:-17159566 | MS.gene48377:CDS |
| TCGTCTTCCGAACTATCCTT+CGG | 0.427547 | 8.3:+17160533 | None:intergenic |
| TGTTTCGGTAAATTGTAGAT+TGG | 0.431614 | 8.3:+17160625 | None:intergenic |
| TTTGTAGGACATGAGAAGGT+TGG | 0.436670 | 8.3:-17159712 | MS.gene48377:intron |
| AACCACAAACGAATCTGCTT+CGG | 0.446185 | 8.3:+17160485 | None:intergenic |
| TCGCCGGCGGAATCATGTTT+CGG | 0.448520 | 8.3:+17160610 | None:intergenic |
| CGTCTTCCGAACTATCCTTC+GGG | 0.448830 | 8.3:+17160534 | None:intergenic |
| CTGAAAATCGCTACTCCATA+GGG | 0.455210 | 8.3:+17160442 | None:intergenic |
| GTTGCTTTGTCGTGTGATCA+TGG | 0.459584 | 8.3:-17159993 | MS.gene48377:CDS |
| CCTGAAAATCGCTACTCCAT+AGG | 0.467324 | 8.3:+17160441 | None:intergenic |
| CATGAGAAGGTTGGAGTTGG+AGG | 0.468737 | 8.3:-17159703 | MS.gene48377:CDS |
| TTTCAGGAATCCTTGTAAAA+CGG | 0.475306 | 8.3:-17160425 | MS.gene48377:CDS |
| ATCCGAAGCAGATTCGTTTG+TGG | 0.477453 | 8.3:-17160487 | MS.gene48377:CDS |
| GGACATGAGAAGGTTGGAGT+TGG | 0.482722 | 8.3:-17159706 | MS.gene48377:CDS |
| AAATTGGAGGCTGTGCCTGC+AGG | 0.495226 | 8.3:-17159968 | MS.gene48377:CDS |
| ACGATTCCCGAAGGATAGTT+CGG | 0.498656 | 8.3:-17160540 | MS.gene48377:CDS |
| GGATGCGACACTCTCGCAAT+CGG | 0.504460 | 8.3:+17160570 | None:intergenic |
| GGAGTATAGGGTAAGTGTTT+CGG | 0.506827 | 8.3:-17159572 | MS.gene48377:CDS |
| GCGCAAGGGTTGAAACCCTA+TGG | 0.518787 | 8.3:-17160457 | MS.gene48377:CDS |
| GAATCCTTGTAAAACGGTAA+TGG | 0.521351 | 8.3:-17160419 | MS.gene48377:CDS |
| CCTTCGGGAATCGTGGCCGC+CGG | 0.528283 | 8.3:+17160549 | None:intergenic |
| CTCCTTGTGAAACTTGGCAA+TGG | 0.542921 | 8.3:+17159591 | None:intergenic |
| TTGCTTTGTCGTGTGATCAT+GGG | 0.546121 | 8.3:-17159992 | MS.gene48377:CDS |
| GATTGCGAGAGTGTCGCATC+CGG | 0.547181 | 8.3:-17160568 | MS.gene48377:CDS |
| AGAACTGTTGTTGACGAACA+AGG | 0.547451 | 8.3:-17160028 | MS.gene48377:CDS |
| AAAGCGCAGAAATCAGAGTC+GGG | 0.547882 | 8.3:+17159644 | None:intergenic |
| TTCAAACTTGCTTCCGACAA+AGG | 0.552001 | 8.3:-17159818 | MS.gene48377:intron |
| GTTTGTGGTTTAAGTGCGCA+AGG | 0.554303 | 8.3:-17160472 | MS.gene48377:CDS |
| AATCGCTGATTCATCTTCGC+CGG | 0.558062 | 8.3:+17160594 | None:intergenic |
| AATTGCATAAAAGGCGAAGA+CGG | 0.562424 | 8.3:+17159667 | None:intergenic |
| GCAATGGAAACAATATCAGA+TGG | 0.571537 | 8.3:+17159607 | None:intergenic |
| GAATCATATTCTTCTGAACT+CGG | 0.573273 | 8.3:+17159929 | None:intergenic |
| CTGCGTTGATCAGAACCTGC+AGG | 0.581877 | 8.3:+17159953 | None:intergenic |
| CGCTGATTCATCTTCGCCGG+CGG | 0.587670 | 8.3:+17160597 | None:intergenic |
| TGTGATCATGGGAAAATTGG+AGG | 0.591354 | 8.3:-17159981 | MS.gene48377:CDS |
| CGGTGGCTAAAATGCGCGGT+GGG | 0.591716 | 8.3:-17160357 | MS.gene48377:CDS |
| TGCGAGAGTGTCGCATCCGG+CGG | 0.593829 | 8.3:-17160565 | MS.gene48377:CDS |
| TTCCATTGCCAAGTTTCACA+AGG | 0.602302 | 8.3:-17159593 | MS.gene48377:CDS |
| TTTGTGGTTTAAGTGCGCAA+GGG | 0.604517 | 8.3:-17160471 | MS.gene48377:CDS |
| ATGAGAAGGTTGGAGTTGGA+GGG | 0.604737 | 8.3:-17159702 | MS.gene48377:CDS |
| TTACCGAAACATGATTCCGC+CGG | 0.606830 | 8.3:-17160613 | MS.gene48377:CDS |
| TGAGATCTTCGCACGTGCGG+TGG | 0.607606 | 8.3:-17160374 | MS.gene48377:CDS |
| CCGGCGGCCACGATTCCCGA+AGG | 0.617069 | 8.3:-17160549 | MS.gene48377:CDS |
| ATAGTTCGGAAGACGACGGA+GGG | 0.618356 | 8.3:-17160526 | MS.gene48377:CDS |
| CGTGCGGTGGCTAAAATGCG+CGG | 0.622389 | 8.3:-17160361 | MS.gene48377:CDS |
| GAAAGCGCAGAAATCAGAGT+CGG | 0.626070 | 8.3:+17159643 | None:intergenic |
| GAACTATCCTTCGGGAATCG+TGG | 0.630182 | 8.3:+17160542 | None:intergenic |
| GATAGTTCGGAAGACGACGG+AGG | 0.630672 | 8.3:-17160527 | MS.gene48377:CDS |
| GTTTGAGATCTTCGCACGTG+CGG | 0.658246 | 8.3:-17160377 | MS.gene48377:CDS |
| AAACGGTAATGGCACAAGCG+AGG | 0.659734 | 8.3:-17160408 | MS.gene48377:CDS |
| GCGGTGGCTAAAATGCGCGG+TGG | 0.662286 | 8.3:-17160358 | MS.gene48377:CDS |
| AGAAGAATATGATTCTGGAG+TGG | 0.669225 | 8.3:-17159921 | MS.gene48377:CDS |
| ATGGAAACAATATCAGATGG+AGG | 0.669944 | 8.3:+17159610 | None:intergenic |
| AAGGATAGTTCGGAAGACGA+CGG | 0.711418 | 8.3:-17160530 | MS.gene48377:CDS |
| ATGCTAATGTGAAACACGTG+TGG | 0.770185 | 8.3:-17160333 | MS.gene48377:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATTAACTTTACTTAA+TGG | - | chr8.3:17160039-17160058 | MS.gene48377:intron | 15.0% |
| !!! | TTTCAGATTTATTTTTTGTT+TGG | - | chr8.3:17160459-17160478 | MS.gene48377:CDS | 15.0% |
| !! | ATTAACTTTACTTAATGGTT+AGG | - | chr8.3:17160044-17160063 | MS.gene48377:intron | 20.0% |
| !! | ATTGTTGATATTATTCAACA+CGG | - | chr8.3:17159909-17159928 | MS.gene48377:CDS | 20.0% |
| !! | TTAACTTTACTTAATGGTTA+GGG | - | chr8.3:17160045-17160064 | MS.gene48377:intron | 20.0% |
| !!! | TATTTTTTGTTTGGTTTTGT+AGG | - | chr8.3:17160468-17160487 | MS.gene48377:CDS | 20.0% |
| !!! | TTGTTGTGTTTTTGTTATTA+GGG | - | chr8.3:17160430-17160449 | MS.gene48377:CDS | 20.0% |
| !!! | TTTGTTGTGTTTTTGTTATT+AGG | - | chr8.3:17160429-17160448 | MS.gene48377:CDS | 20.0% |
| ! | TTGAAACTCATAACATATTC+AGG | + | chr8.3:17160362-17160381 | None:intergenic | 25.0% |
| AGTTCAGAAGAATATGATTC+TGG | - | chr8.3:17160269-17160288 | MS.gene48377:intron | 30.0% | |
| GAATCATATTCTTCTGAACT+CGG | + | chr8.3:17160269-17160288 | None:intergenic | 30.0% | |
| TGTTTCGGTAAATTGTAGAT+TGG | + | chr8.3:17159573-17159592 | None:intergenic | 30.0% | |
| TTTCAGGAATCCTTGTAAAA+CGG | - | chr8.3:17159770-17159789 | MS.gene48377:intron | 30.0% | |
| TTTGGTTATGTTCATAGCAA+TGG | - | chr8.3:17159933-17159952 | MS.gene48377:CDS | 30.0% | |
| ! | GATATTATTCAACACGGTTT+TGG | - | chr8.3:17159915-17159934 | MS.gene48377:CDS | 30.0% |
| AATTGCATAAAAGGCGAAGA+CGG | + | chr8.3:17160531-17160550 | None:intergenic | 35.0% | |
| ACTCCAAACAATGAACTCTT+TGG | + | chr8.3:17160315-17160334 | None:intergenic | 35.0% | |
| ATGGAAACAATATCAGATGG+AGG | + | chr8.3:17160588-17160607 | None:intergenic | 35.0% | |
| CTCCAAACAATGAACTCTTT+GGG | + | chr8.3:17160314-17160333 | None:intergenic | 35.0% | |
| GAATCCTTGTAAAACGGTAA+TGG | - | chr8.3:17159776-17159795 | MS.gene48377:intron | 35.0% | |
| GCAATGGAAACAATATCAGA+TGG | + | chr8.3:17160591-17160610 | None:intergenic | 35.0% | |
| ! | AGAAGAATATGATTCTGGAG+TGG | - | chr8.3:17160274-17160293 | MS.gene48377:intron | 35.0% |
| ! | CAAGTTTCACAAGGAGTATA+GGG | - | chr8.3:17160611-17160630 | MS.gene48377:CDS | 35.0% |
| ! | TTGTTGACGAACAAGGTTTT+AGG | - | chr8.3:17160174-17160193 | MS.gene48377:intron | 35.0% |
| AAACGAATCTGCTTCGGATT+AGG | + | chr8.3:17159707-17159726 | None:intergenic | 40.0% | |
| AACCACAAACGAATCTGCTT+CGG | + | chr8.3:17159713-17159732 | None:intergenic | 40.0% | |
| AATGTGAAACACGTGTGGTA+CGG | - | chr8.3:17159867-17159886 | MS.gene48377:CDS | 40.0% | |
| AGAACTGTTGTTGACGAACA+AGG | - | chr8.3:17160167-17160186 | MS.gene48377:intron | 40.0% | |
| AGAGTCGGGAATTGCATAAA+AGG | + | chr8.3:17160540-17160559 | None:intergenic | 40.0% | |
| ATGCTAATGTGAAACACGTG+TGG | - | chr8.3:17159862-17159881 | MS.gene48377:CDS | 40.0% | |
| ATTAACTCGTGCCTTTCAAG+TGG | + | chr8.3:17159984-17160003 | None:intergenic | 40.0% | |
| CAAACGATTCTCCACTTGAA+AGG | - | chr8.3:17159970-17159989 | MS.gene48377:CDS | 40.0% | |
| CAAGTACACACTACCTTTGT+CGG | + | chr8.3:17160393-17160412 | None:intergenic | 40.0% | |
| CCTATACTCCTTGTGAAACT+TGG | + | chr8.3:17160613-17160632 | None:intergenic | 40.0% | |
| CTCCCAAAGAGTTCATTGTT+TGG | - | chr8.3:17160309-17160328 | MS.gene48377:intron | 40.0% | |
| CTGAAAATCGCTACTCCATA+GGG | + | chr8.3:17159756-17159775 | None:intergenic | 40.0% | |
| GGAGTATAGGGTAAGTGTTT+CGG | - | chr8.3:17160623-17160642 | MS.gene48377:CDS | 40.0% | |
| TCGTGTGATCATGGGAAAAT+TGG | - | chr8.3:17160211-17160230 | MS.gene48377:intron | 40.0% | |
| TGTGATCATGGGAAAATTGG+AGG | - | chr8.3:17160214-17160233 | MS.gene48377:intron | 40.0% | |
| TTCCATTGCCAAGTTTCACA+AGG | - | chr8.3:17160602-17160621 | MS.gene48377:CDS | 40.0% | |
| TTGCTTTGTCGTGTGATCAT+GGG | - | chr8.3:17160203-17160222 | MS.gene48377:intron | 40.0% | |
| TTTGTAGGACATGAGAAGGT+TGG | - | chr8.3:17160483-17160502 | MS.gene48377:CDS | 40.0% | |
| TTTGTGGTTTAAGTGCGCAA+GGG | - | chr8.3:17159724-17159743 | MS.gene48377:intron | 40.0% | |
| ! | CCAAGTTTCACAAGGAGTAT+AGG | - | chr8.3:17160610-17160629 | MS.gene48377:CDS | 40.0% |
| ! | CTTTCAAGTGGAGAATCGTT+TGG | + | chr8.3:17159972-17159991 | None:intergenic | 40.0% |
| ! | TGTGTACTTGTGTGTTGTTG+TGG | - | chr8.3:17160403-17160422 | MS.gene48377:CDS | 40.0% |
| ! | TTCAAACTTGCTTCCGACAA+AGG | - | chr8.3:17160377-17160396 | MS.gene48377:CDS | 40.0% |
| !! | TGTGCCATTACCGTTTTACA+AGG | + | chr8.3:17159783-17159802 | None:intergenic | 40.0% |
| !!! | TGGTTTTGTAGGACATGAGA+AGG | - | chr8.3:17160479-17160498 | MS.gene48377:CDS | 40.0% |
| AAAGCGCAGAAATCAGAGTC+GGG | + | chr8.3:17160554-17160573 | None:intergenic | 45.0% | |
| AAGGATAGTTCGGAAGACGA+CGG | - | chr8.3:17159665-17159684 | MS.gene48377:CDS | 45.0% | |
| ACGATTCCCGAAGGATAGTT+CGG | - | chr8.3:17159655-17159674 | MS.gene48377:CDS | 45.0% | |
| ATCCGAAGCAGATTCGTTTG+TGG | - | chr8.3:17159708-17159727 | MS.gene48377:CDS | 45.0% | |
| ATGAGAAGGTTGGAGTTGGA+GGG | - | chr8.3:17160493-17160512 | MS.gene48377:CDS | 45.0% | |
| CCTGAAAATCGCTACTCCAT+AGG | + | chr8.3:17159757-17159776 | None:intergenic | 45.0% | |
| CTCCTTGTGAAACTTGGCAA+TGG | + | chr8.3:17160607-17160626 | None:intergenic | 45.0% | |
| GTTTGTGGTTTAAGTGCGCA+AGG | - | chr8.3:17159723-17159742 | MS.gene48377:intron | 45.0% | |
| TAGGGTAAGTGTTTCGGACT+TGG | - | chr8.3:17160629-17160648 | MS.gene48377:CDS | 45.0% | |
| TCGTCTTCCGAACTATCCTT+CGG | + | chr8.3:17159665-17159684 | None:intergenic | 45.0% | |
| TTACCGAAACATGATTCCGC+CGG | - | chr8.3:17159582-17159601 | MS.gene48377:CDS | 45.0% | |
| ! | CCTATGGAGTAGCGATTTTC+AGG | - | chr8.3:17159754-17159773 | MS.gene48377:intron | 45.0% |
| ! | GAAAGCGCAGAAATCAGAGT+CGG | + | chr8.3:17160555-17160574 | None:intergenic | 45.0% |
| ! | GTTGCTTTGTCGTGTGATCA+TGG | - | chr8.3:17160202-17160221 | MS.gene48377:intron | 45.0% |
| !! | AATCGCTGATTCATCTTCGC+CGG | + | chr8.3:17159604-17159623 | None:intergenic | 45.0% |
| ATAGTTCGGAAGACGACGGA+GGG | - | chr8.3:17159669-17159688 | MS.gene48377:CDS | 50.0% | |
| CATGAGAAGGTTGGAGTTGG+AGG | - | chr8.3:17160492-17160511 | MS.gene48377:CDS | 50.0% | |
| CGTCTTCCGAACTATCCTTC+GGG | + | chr8.3:17159664-17159683 | None:intergenic | 50.0% | |
| GAACTATCCTTCGGGAATCG+TGG | + | chr8.3:17159656-17159675 | None:intergenic | 50.0% | |
| GGACATGAGAAGGTTGGAGT+TGG | - | chr8.3:17160489-17160508 | MS.gene48377:CDS | 50.0% | |
| ! | AAACGGTAATGGCACAAGCG+AGG | - | chr8.3:17159787-17159806 | MS.gene48377:intron | 50.0% |
| ! | GTTTGAGATCTTCGCACGTG+CGG | - | chr8.3:17159818-17159837 | MS.gene48377:intron | 50.0% |
| AAATTGGAGGCTGTGCCTGC+AGG | - | chr8.3:17160227-17160246 | MS.gene48377:intron | 55.0% | |
| GATAGTTCGGAAGACGACGG+AGG | - | chr8.3:17159668-17159687 | MS.gene48377:CDS | 55.0% | |
| GCGCAAGGGTTGAAACCCTA+TGG | - | chr8.3:17159738-17159757 | MS.gene48377:intron | 55.0% | |
| GGATGCGACACTCTCGCAAT+CGG | + | chr8.3:17159628-17159647 | None:intergenic | 55.0% | |
| TCGCCGGCGGAATCATGTTT+CGG | + | chr8.3:17159588-17159607 | None:intergenic | 55.0% | |
| ! | CTGCGTTGATCAGAACCTGC+AGG | + | chr8.3:17160245-17160264 | None:intergenic | 55.0% |
| !! | GATTGCGAGAGTGTCGCATC+CGG | - | chr8.3:17159627-17159646 | MS.gene48377:CDS | 55.0% |
| CGGTGGCTAAAATGCGCGGT+GGG | - | chr8.3:17159838-17159857 | MS.gene48377:CDS | 60.0% | |
| CGTGCGGTGGCTAAAATGCG+CGG | - | chr8.3:17159834-17159853 | MS.gene48377:CDS | 60.0% | |
| TGAGATCTTCGCACGTGCGG+TGG | - | chr8.3:17159821-17159840 | MS.gene48377:CDS | 60.0% | |
| !! | CGCTGATTCATCTTCGCCGG+CGG | + | chr8.3:17159601-17159620 | None:intergenic | 60.0% |
| GCGGTGGCTAAAATGCGCGG+TGG | - | chr8.3:17159837-17159856 | MS.gene48377:CDS | 65.0% | |
| !! | TGCGAGAGTGTCGCATCCGG+CGG | - | chr8.3:17159630-17159649 | MS.gene48377:CDS | 65.0% |
| CCTTCGGGAATCGTGGCCGC+CGG | + | chr8.3:17159649-17159668 | None:intergenic | 70.0% | |
| CCGGCGGCCACGATTCCCGA+AGG | - | chr8.3:17159646-17159665 | MS.gene48377:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 17159561 | 17160656 | 17159561 | ID=MS.gene48377 |
| chr8.3 | mRNA | 17159561 | 17160656 | 17159561 | ID=MS.gene48377.t1;Parent=MS.gene48377 |
| chr8.3 | exon | 17160334 | 17160656 | 17160334 | ID=MS.gene48377.t1.exon1;Parent=MS.gene48377.t1 |
| chr8.3 | CDS | 17160334 | 17160656 | 17160334 | ID=cds.MS.gene48377.t1;Parent=MS.gene48377.t1 |
| chr8.3 | exon | 17159819 | 17160057 | 17159819 | ID=MS.gene48377.t1.exon2;Parent=MS.gene48377.t1 |
| chr8.3 | CDS | 17159819 | 17160057 | 17159819 | ID=cds.MS.gene48377.t1;Parent=MS.gene48377.t1 |
| chr8.3 | exon | 17159561 | 17159727 | 17159561 | ID=MS.gene48377.t1.exon3;Parent=MS.gene48377.t1 |
| chr8.3 | CDS | 17159561 | 17159727 | 17159561 | ID=cds.MS.gene48377.t1;Parent=MS.gene48377.t1 |
| Gene Sequence |
| Protein sequence |
