AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48575

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48575.t1 MTR_7g014330 90.611 458 43 0 1 458 1 458 0.0 867
MS.gene48575.t1 MTR_7g014230 88.546 454 52 0 2 455 4 457 0.0 837
MS.gene48575.t1 MTR_7g014250 86.681 458 61 0 1 458 1 458 0.0 833
MS.gene48575.t1 MTR_7g014360 81.701 388 51 1 71 458 21 388 0.0 647
MS.gene48575.t1 MTR_7g014310 68.862 334 50 2 108 441 29 308 5.06e-156 444
MS.gene48575.t1 MTR_6g015815 47.436 468 222 10 2 458 8 462 2.99e-145 423
MS.gene48575.t1 MTR_6g015850 47.300 463 225 9 3 458 9 459 4.42e-142 415
MS.gene48575.t1 MTR_6g015830 47.752 467 220 11 3 458 9 462 4.82e-142 415
MS.gene48575.t1 MTR_6g015320 46.767 464 223 12 3 458 9 456 4.05e-136 399
MS.gene48575.t1 MTR_6g015315 46.320 462 229 10 3 458 6 454 6.19e-135 396
MS.gene48575.t1 MTR_7g014610 41.597 476 251 12 3 458 9 477 1.15e-110 335
MS.gene48575.t1 MTR_7g014200 41.489 470 252 13 3 458 10 470 1.09e-109 332
MS.gene48575.t1 MTR_7g014160 40.506 474 254 14 3 457 10 474 9.25e-106 322
MS.gene48575.t1 MTR_7g013850 39.046 461 242 13 27 457 30 481 1.52e-97 301
MS.gene48575.t1 MTR_7g014620 39.150 447 237 10 22 457 11 433 7.68e-90 280
MS.gene48575.t1 MTR_3g028210 35.095 473 271 10 3 456 9 464 2.58e-87 275
MS.gene48575.t1 MTR_2g089765 37.448 478 255 13 3 452 17 478 2.65e-87 275
MS.gene48575.t1 MTR_8g012750 35.924 476 276 12 3 456 4 472 7.43e-82 261
MS.gene48575.t1 MTR_7g015860 35.579 475 257 12 3 452 6 456 3.81e-80 256
MS.gene48575.t1 MTR_2g089670 37.748 453 240 16 22 452 41 473 2.26e-79 254
MS.gene48575.t1 MTR_6g015310 40.608 362 156 10 76 433 25 331 1.49e-76 243
MS.gene48575.t1 MTR_3g087640 34.356 489 260 16 3 456 10 472 4.57e-73 238
MS.gene48575.t1 MTR_2g089650 33.820 479 271 14 3 458 10 465 4.84e-73 238
MS.gene48575.t1 MTR_2g089735 33.937 442 253 11 39 458 39 463 2.05e-72 236
MS.gene48575.t1 MTR_2g089755 33.846 455 265 12 26 458 37 477 2.47e-72 236
MS.gene48575.t1 MTR_7g014205 79.389 131 16 1 295 425 1 120 2.07e-68 214
MS.gene48575.t1 MTR_7g014630 44.245 278 134 7 3 267 10 279 8.56e-68 221
MS.gene48575.t1 MTR_7g014210 83.478 115 18 1 314 427 24 138 5.44e-58 189
MS.gene48575.t1 MTR_2g089665 32.658 444 176 13 1 431 1 334 4.69e-52 179
MS.gene48575.t1 MTR_7g014180 48.521 169 81 2 3 168 8 173 9.28e-45 154
MS.gene48575.t1 MTR_3g435300 36.131 274 147 8 3 262 4 263 8.73e-41 147
MS.gene48575.t1 MTR_7g014340 92.958 71 5 0 1 71 1 71 6.90e-39 136
MS.gene48575.t1 MTR_7g014670 37.895 190 112 4 272 456 71 259 1.12e-33 127
MS.gene48575.t1 MTR_7g014220 88.525 61 7 0 14 74 6 66 1.94e-30 113
MS.gene48575.t1 MTR_0190s0020 29.821 446 226 21 23 437 26 415 1.02e-24 106
MS.gene48575.t1 MTR_4g094838 25.061 411 232 15 26 413 28 385 5.32e-22 98.2
MS.gene48575.t1 MTR_2g064495 23.585 424 278 14 42 452 39 429 4.94e-21 95.5
MS.gene48575.t1 MTR_3g026310 27.523 436 246 20 10 413 6 403 5.36e-21 95.5
MS.gene48575.t1 MTR_8g075610 26.357 387 224 17 42 409 30 374 8.55e-21 94.7
MS.gene48575.t1 MTR_7g085930 25.629 437 261 12 56 456 53 461 1.29e-20 94.4
MS.gene48575.t1 MTR_3g088420 25.349 430 252 16 8 413 4 388 1.30e-20 94.4
MS.gene48575.t1 MTR_2g105330 23.585 424 278 14 42 452 39 429 3.15e-20 93.2
MS.gene48575.t1 MTR_4g094835 24.029 412 245 17 26 413 32 399 3.51e-20 93.2
MS.gene48575.t1 MTR_8g096530 26.966 356 222 12 62 410 59 383 2.74e-19 90.5
MS.gene48575.t1 MTR_4g094842 27.833 406 221 18 53 427 45 409 3.56e-19 90.1
MS.gene48575.t1 MTR_3g049150 25.916 382 224 13 56 409 49 399 5.10e-19 89.7
MS.gene48575.t1 MTR_8g079710 25.791 411 240 16 26 413 29 397 9.43e-19 88.6
MS.gene48575.t1 MTR_3g098980 26.055 403 252 15 62 453 66 433 1.29e-18 88.2
MS.gene48575.t1 MTR_7g026860 25.971 412 243 16 20 409 18 389 1.97e-18 87.8
MS.gene48575.t1 MTR_3g026950 26.683 401 230 16 40 409 36 403 2.18e-18 87.8
MS.gene48575.t1 MTR_7g086000 26.024 415 270 13 62 456 60 457 6.10e-18 86.3
MS.gene48575.t1 MTR_4g022825 24.519 416 254 16 20 413 18 395 7.43e-18 85.9
MS.gene48575.t1 MTR_3g101970 26.634 413 216 17 26 408 29 384 7.98e-18 85.9
MS.gene48575.t1 MTR_7g085990 26.220 328 197 7 56 364 49 350 1.75e-17 85.1
MS.gene48575.t1 MTR_4g094828 25.424 413 256 18 20 413 23 402 9.09e-17 82.8
MS.gene48575.t1 MTR_4g022800 27.791 421 236 20 20 413 18 397 4.42e-16 80.5
MS.gene48575.t1 MTR_3g101930 25.714 385 233 14 48 412 56 407 6.26e-16 80.1
MS.gene48575.t1 MTR_4g022720 25.120 418 244 16 20 413 18 390 8.91e-16 79.7
MS.gene48575.t1 MTR_4g127650 24.167 360 214 11 24 364 29 348 1.02e-15 79.3
MS.gene48575.t1 MTR_7g027175 25.212 353 230 12 62 409 68 391 2.76e-15 78.2
MS.gene48575.t1 MTR_3g101960 25.837 418 226 19 26 408 29 397 2.49e-14 75.1
MS.gene48575.t1 MTR_5g026320 24.113 423 267 18 26 433 41 424 5.22e-13 71.2
MS.gene48575.t1 MTR_4g022760 26.382 398 215 18 10 377 6 355 6.49e-13 70.5
MS.gene48575.t1 MTR_3g435290 34.146 123 76 3 337 458 1 119 1.08e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48575.t1 AT3G29670 39.615 467 250 14 4 458 5 451 4.72e-98 302
MS.gene48575.t1 AT3G29635 39.644 449 234 12 24 456 27 454 1.05e-95 296
MS.gene48575.t1 AT5G39090 38.793 464 248 12 5 456 8 447 9.54e-95 293
MS.gene48575.t1 AT5G61160 36.653 472 260 12 3 458 4 452 4.61e-91 284
MS.gene48575.t1 AT5G39050 38.136 472 259 14 3 456 11 467 1.47e-89 280
MS.gene48575.t1 AT5G39080 36.774 465 264 12 4 452 7 457 1.96e-89 280
MS.gene48575.t1 AT3G29680 40.455 440 232 16 24 452 23 443 9.36e-88 275
MS.gene48575.t1 AT3G29590 36.752 468 252 12 4 456 10 448 1.68e-87 275
MS.gene48575.t1 AT1G03940 36.134 476 262 15 3 456 9 464 9.90e-84 265
MS.gene48575.t1 AT1G03495 35.000 360 198 11 1 340 1 344 1.28e-58 196
MS.gene48575.t1 AT3G29720 35.885 209 110 6 99 299 26 218 6.47e-29 113
MS.gene48575.t1 AT5G23940 25.536 466 273 16 3 436 4 427 3.82e-23 102
MS.gene48575.t1 AT2G19070 25.893 448 269 17 39 456 37 451 1.19e-22 100
MS.gene48575.t1 AT5G48930 23.195 457 300 18 9 448 4 426 1.74e-18 87.8
MS.gene48575.t1 AT1G31490 24.181 397 252 13 23 409 26 383 6.33e-18 86.3
MS.gene48575.t1 AT5G67160 23.614 415 257 10 10 409 13 382 1.12e-16 82.4
MS.gene48575.t1 AT3G29690 33.562 146 89 4 312 455 38 177 1.34e-16 78.2
MS.gene48575.t1 AT3G47170 26.502 283 170 10 62 328 70 330 1.74e-16 82.0
MS.gene48575.t1 AT5G67150 24.286 420 267 14 10 412 13 398 2.99e-16 81.3
MS.gene48575.t1 AT5G38130 25.362 414 249 18 29 423 52 424 2.39e-14 75.5
MS.gene48575.t1 AT3G48720 23.944 355 232 14 62 409 61 384 2.31e-13 72.0
MS.gene48575.t1 AT1G24430 22.851 442 270 15 26 450 29 416 3.65e-13 71.6
MS.gene48575.t1 AT5G07850 23.810 378 244 11 50 413 58 405 4.71e-13 71.2
MS.gene48575.t1 AT3G26040 24.533 428 252 15 42 448 41 418 8.57e-13 70.5
MS.gene48575.t1 AT4G31910 23.343 347 222 12 42 368 46 368 1.32e-12 70.1
MS.gene48575.t1 AT1G28680 23.050 282 193 5 62 342 62 320 4.82e-12 68.2
MS.gene48575.t1 AT1G28680 22.968 283 194 5 62 343 62 321 5.71e-12 67.8

Find 73 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGATTTATTTGGAGAAAA+TGG 0.190102 7.2:+82964498 MS.gene48575:CDS
GTTAAAACAAGTGATTTATT+TGG 0.208890 7.2:+82964489 MS.gene48575:CDS
AGAAAGGGATTGTTTGAGTT+TGG 0.214942 7.2:-82963659 None:intergenic
GCTGATTTCAATCATTTATC+TGG 0.253026 7.2:+82963802 MS.gene48575:CDS
TGGTCATCATGGTTACTTAA+AGG 0.264063 7.2:+82964597 MS.gene48575:CDS
GAAACCATTTCAACTTTCTT+TGG 0.269632 7.2:-82964705 None:intergenic
GTGCTATAAACCTCAAATTT+AGG 0.277190 7.2:-82964663 None:intergenic
TTACTTTCTTTGACATACTA+TGG 0.279036 7.2:+82963557 MS.gene48575:CDS
CCAATTGAAAATCCGTAGTT+TGG 0.297340 7.2:-82963925 None:intergenic
CCAAACCATTAAGCTTCTAT+TGG 0.298491 7.2:-82964169 None:intergenic
AACAACCAATAGAAGCTTAA+TGG 0.299594 7.2:+82964164 MS.gene48575:CDS
CAATAGAAGCTTAATGGTTT+GGG 0.310409 7.2:+82964170 MS.gene48575:CDS
AGGCAAAATATTTGAGTGAT+TGG 0.318923 7.2:+82964127 MS.gene48575:CDS
TCTCTTTCTGATTGTAGAAA+TGG 0.323114 7.2:+82964750 MS.gene48575:CDS
CCAATAGAAGCTTAATGGTT+TGG 0.323690 7.2:+82964169 MS.gene48575:CDS
TTTGGATATTGAAAAGCTTA+AGG 0.336799 7.2:+82964242 MS.gene48575:CDS
AATGCTCTAAATGAATCTTC+TGG 0.337408 7.2:-82964204 None:intergenic
CTTTGATGAATTTGATGATT+GGG 0.339665 7.2:-82963744 None:intergenic
ATTATTTCAATTATCTCGTT+TGG 0.347107 7.2:+82964224 MS.gene48575:CDS
ACATACTTTGGAAATTGTAT+TGG 0.352174 7.2:+82964450 MS.gene48575:CDS
GAGGTTTATAGCACTGATTT+TGG 0.354064 7.2:+82964672 MS.gene48575:CDS
CCTTTGATGAATTTGATGAT+TGG 0.356314 7.2:-82963745 None:intergenic
GAAAGGGATTGTTTGAGTTT+GGG 0.362666 7.2:-82963658 None:intergenic
ACATGAACAAGCTTCTGTTT+TGG 0.364822 7.2:+82963882 MS.gene48575:CDS
CCGATTCCTGCAACATACTT+TGG 0.373253 7.2:+82964438 MS.gene48575:CDS
TCATGTGAAATATTCAAGTT+AGG 0.378648 7.2:-82963865 None:intergenic
AATTCACTTGTCAACATTTG+TGG 0.379172 7.2:+82964311 MS.gene48575:CDS
TAGAAGAAAATTCTTTGAAC+AGG 0.387117 7.2:-82963592 None:intergenic
CAATTTCCAAAGTATGTTGC+AGG 0.392215 7.2:-82964444 None:intergenic
TAGGTTTGAATATCGATTGC+AGG 0.392519 7.2:+82964400 MS.gene48575:CDS
ATTTGTAGTGTCAAAACAAA+AGG 0.406667 7.2:+82964266 MS.gene48575:CDS
CCAAAGTATGTTGCAGGAAT+CGG 0.415495 7.2:-82964438 None:intergenic
TGCTGGTTCACCTAAATTTG+AGG 0.418931 7.2:+82964653 MS.gene48575:CDS
TGAAGTGTTGAGTGAAGCTT+TGG 0.425405 7.2:+82964536 MS.gene48575:CDS
TGTTGAATGGAGCTGAAAAT+TGG 0.429790 7.2:+82964577 MS.gene48575:CDS
AGTGAGAAAGTGTAAGAGAA+AGG 0.431882 7.2:-82963675 None:intergenic
ATTGTTTGAGTTTGGGAAGA+AGG 0.432191 7.2:-82963651 None:intergenic
AAAACCAAAGAAAGTTGAAA+TGG 0.434697 7.2:+82964701 MS.gene48575:CDS
ATTGGGTTGTGAGAATCATT+AGG 0.438465 7.2:-82963727 None:intergenic
ATTGCTGATGTTAAAACAAT+TGG 0.438756 7.2:+82964627 MS.gene48575:CDS
AATGGTGATGGTGTTGAGAT+AGG 0.443549 7.2:+82964768 MS.gene48575:CDS
AGTATGTCAAAGAAAGTAAG+AGG 0.444791 7.2:-82963553 None:intergenic
TTAAAAGATGGTGTGTTGAA+TGG 0.447020 7.2:+82964564 MS.gene48575:CDS
ATTACATTTCTATCATAGAA+AGG 0.455442 7.2:-82964084 None:intergenic
GTGAGAAAGTGTAAGAGAAA+GGG 0.464182 7.2:-82963674 None:intergenic
TGGTATCTATTGCTTATGCA+TGG 0.464673 7.2:+82964331 MS.gene48575:CDS
AAGAAAATTCTTTGAACAGG+TGG 0.476348 7.2:-82963589 None:intergenic
GCTTTGGAAACTTTAAAAGA+TGG 0.477917 7.2:+82964552 MS.gene48575:CDS
CAAGGATCCAAATGAATTTG+AGG 0.481282 7.2:+82964107 MS.gene48575:CDS
ATGGTTTCTATAGATAGAAC+TGG 0.490163 7.2:+82964720 MS.gene48575:CDS
TTGTTTGAGTTTGGGAAGAA+GGG 0.491749 7.2:-82963650 None:intergenic
GTTAAAACAATTGGTACTGC+TGG 0.495742 7.2:+82964636 MS.gene48575:CDS
TGTCAAAACAAAAGGGTACT+AGG 0.501108 7.2:+82964274 MS.gene48575:CDS
TTTGCTTCGCTCTTTGTCAA+AGG 0.503257 7.2:+82964822 MS.gene48575:CDS
GGTATTTCTACTTGTGAAGA+TGG 0.504447 7.2:-82963514 None:intergenic
AAAGAAAGTAAGAGGAAGTG+AGG 0.516885 7.2:-82963545 None:intergenic
TTGAGTGATTGGTTAAAGCA+AGG 0.525666 7.2:+82964138 MS.gene48575:CDS
CTATGATAGAAATGTAATCA+AGG 0.525898 7.2:+82964089 MS.gene48575:CDS
TCTACAATCAGAAAGAGAAA+AGG 0.535706 7.2:-82964745 None:intergenic
AGAGGAAGTGAGGTTTCTGA+AGG 0.537876 7.2:-82963535 None:intergenic
AGAAAATTCTTTGAACAGGT+GGG 0.549747 7.2:-82963588 None:intergenic
GAGCTGAAAATTGGTCATCA+TGG 0.557553 7.2:+82964586 MS.gene48575:CDS
TTTGTAGTGTCAAAACAAAA+GGG 0.558518 7.2:+82964267 MS.gene48575:CDS
CCAATCATCAAATTCATCAA+AGG 0.560308 7.2:+82963745 MS.gene48575:CDS
AAGAAAAGTGAGGTTTCGTG+TGG 0.572135 7.2:-82963622 None:intergenic
GGTATCTATTGCTTATGCAT+GGG 0.580397 7.2:+82964332 MS.gene48575:CDS
CAAATGAGATGACCCAAAAG+AGG 0.588902 7.2:-82963703 None:intergenic
AAGGGTATTGAAGAAAAGTG+AGG 0.604994 7.2:-82963632 None:intergenic
AACTCATGTGGCAAACAAAG+TGG 0.610535 7.2:-82964057 None:intergenic
TCTGATTGTAGAAATGGTGA+TGG 0.615354 7.2:+82964756 MS.gene48575:CDS
AGTGATTGGTTAAAGCAAGG+TGG 0.623091 7.2:+82964141 MS.gene48575:CDS
ATCAGCATGAGATTCAGCTA+TGG 0.626225 7.2:-82963785 None:intergenic
TAGAAAGGACAAAACTCATG+TGG 0.652604 7.2:-82964069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATTTCTATCATAGAA+AGG - chr7.2:82964087-82964106 None:intergenic 20.0%
!! ATTATTTCAATTATCTCGTT+TGG + chr7.2:82964224-82964243 MS.gene48575:CDS 20.0%
!! GTTAAAACAAGTGATTTATT+TGG + chr7.2:82964489-82964508 MS.gene48575:CDS 20.0%
!!! AACTTCTTTTATCAAATCTT+GGG + chr7.2:82963987-82964006 MS.gene48575:CDS 20.0%
! AAAACCAAAGAAAGTTGAAA+TGG + chr7.2:82964701-82964720 MS.gene48575:CDS 25.0%
! AGTGATTTATTTGGAGAAAA+TGG + chr7.2:82964498-82964517 MS.gene48575:CDS 25.0%
! ATTGCTGATGTTAAAACAAT+TGG + chr7.2:82964627-82964646 MS.gene48575:CDS 25.0%
! ATTTGTAGTGTCAAAACAAA+AGG + chr7.2:82964266-82964285 MS.gene48575:CDS 25.0%
! CTATGATAGAAATGTAATCA+AGG + chr7.2:82964089-82964108 MS.gene48575:CDS 25.0%
! TAGAAGAAAATTCTTTGAAC+AGG - chr7.2:82963595-82963614 None:intergenic 25.0%
! TTACTTTCTTTGACATACTA+TGG + chr7.2:82963557-82963576 MS.gene48575:CDS 25.0%
! TTTGGATATTGAAAAGCTTA+AGG + chr7.2:82964242-82964261 MS.gene48575:CDS 25.0%
! TTTGTAGTGTCAAAACAAAA+GGG + chr7.2:82964267-82964286 MS.gene48575:CDS 25.0%
!! ACATACTTTGGAAATTGTAT+TGG + chr7.2:82964450-82964469 MS.gene48575:CDS 25.0%
!! CAACTTCTTTTATCAAATCT+TGG + chr7.2:82963986-82964005 MS.gene48575:CDS 25.0%
!! CTTTGATGAATTTGATGATT+GGG - chr7.2:82963747-82963766 None:intergenic 25.0%
!! TATTTTGCCTCAAATTCATT+TGG - chr7.2:82964117-82964136 None:intergenic 25.0%
!! TCATGTGAAATATTCAAGTT+AGG - chr7.2:82963868-82963887 None:intergenic 25.0%
!!! AATTGTTTTAACATCAGCAA+TGG - chr7.2:82964628-82964647 None:intergenic 25.0%
!!! CATTTTTAAGCTTTCTACAT+AGG - chr7.2:82964017-82964036 None:intergenic 25.0%
AAATCCGTAGTTTGGAAAAA+TGG - chr7.2:82963920-82963939 None:intergenic 30.0%
AACAACCAATAGAAGCTTAA+TGG + chr7.2:82964164-82964183 MS.gene48575:CDS 30.0%
AAGAAAATTCTTTGAACAGG+TGG - chr7.2:82963592-82963611 None:intergenic 30.0%
AATTCACTTGTCAACATTTG+TGG + chr7.2:82964311-82964330 MS.gene48575:CDS 30.0%
AGAAAATTCTTTGAACAGGT+GGG - chr7.2:82963591-82963610 None:intergenic 30.0%
AGGCAAAATATTTGAGTGAT+TGG + chr7.2:82964127-82964146 MS.gene48575:CDS 30.0%
AGTATGTCAAAGAAAGTAAG+AGG - chr7.2:82963556-82963575 None:intergenic 30.0%
ATGGTTTCTATAGATAGAAC+TGG + chr7.2:82964720-82964739 MS.gene48575:CDS 30.0%
CAATAGAAGCTTAATGGTTT+GGG + chr7.2:82964170-82964189 MS.gene48575:CDS 30.0%
CCAATCATCAAATTCATCAA+AGG + chr7.2:82963745-82963764 MS.gene48575:CDS 30.0%
GAAACCATTTCAACTTTCTT+TGG - chr7.2:82964708-82964727 None:intergenic 30.0%
GAGAACAAAAATGCTTTGAT+AGG + chr7.2:82964381-82964400 MS.gene48575:CDS 30.0%
GTGCTATAAACCTCAAATTT+AGG - chr7.2:82964666-82964685 None:intergenic 30.0%
TCTACAATCAGAAAGAGAAA+AGG - chr7.2:82964748-82964767 None:intergenic 30.0%
TCTCTTTCTGATTGTAGAAA+TGG + chr7.2:82964750-82964769 MS.gene48575:CDS 30.0%
TGTGTCTAACAAAAAAGCAA+TGG + chr7.2:82964794-82964813 MS.gene48575:CDS 30.0%
TTAAAAGATGGTGTGTTGAA+TGG + chr7.2:82964564-82964583 MS.gene48575:CDS 30.0%
! AATGCTCTAAATGAATCTTC+TGG - chr7.2:82964207-82964226 None:intergenic 30.0%
! CCTTTGATGAATTTGATGAT+TGG - chr7.2:82963748-82963767 None:intergenic 30.0%
! GCTGATTTCAATCATTTATC+TGG + chr7.2:82963802-82963821 MS.gene48575:CDS 30.0%
!! GCTTTGGAAACTTTAAAAGA+TGG + chr7.2:82964552-82964571 MS.gene48575:CDS 30.0%
!! GTTACCATTTTTCCAAACTA+CGG + chr7.2:82963913-82963932 MS.gene48575:CDS 30.0%
!! TCTCACTTTTATCCTCTTTT+GGG + chr7.2:82963691-82963710 MS.gene48575:CDS 30.0%
!! TTCTCACTTTTATCCTCTTT+TGG + chr7.2:82963690-82963709 MS.gene48575:CDS 30.0%
AAAGAAAGTAAGAGGAAGTG+AGG - chr7.2:82963548-82963567 None:intergenic 35.0%
CAAGGATCCAAATGAATTTG+AGG + chr7.2:82964107-82964126 MS.gene48575:CDS 35.0%
CAATTTCCAAAGTATGTTGC+AGG - chr7.2:82964447-82964466 None:intergenic 35.0%
CCAAACCATTAAGCTTCTAT+TGG - chr7.2:82964172-82964191 None:intergenic 35.0%
CCAATAGAAGCTTAATGGTT+TGG + chr7.2:82964169-82964188 MS.gene48575:CDS 35.0%
CCAATTGAAAATCCGTAGTT+TGG - chr7.2:82963928-82963947 None:intergenic 35.0%
GGTATCTATTGCTTATGCAT+GGG + chr7.2:82964332-82964351 MS.gene48575:CDS 35.0%
GTTAAAACAATTGGTACTGC+TGG + chr7.2:82964636-82964655 MS.gene48575:CDS 35.0%
TAGAAAGGACAAAACTCATG+TGG - chr7.2:82964072-82964091 None:intergenic 35.0%
TCTGATTGTAGAAATGGTGA+TGG + chr7.2:82964756-82964775 MS.gene48575:CDS 35.0%
TGGTATCTATTGCTTATGCA+TGG + chr7.2:82964331-82964350 MS.gene48575:CDS 35.0%
TGGTCATCATGGTTACTTAA+AGG + chr7.2:82964597-82964616 MS.gene48575:CDS 35.0%
TGTTGAATGGAGCTGAAAAT+TGG + chr7.2:82964577-82964596 MS.gene48575:CDS 35.0%
! ACATGAACAAGCTTCTGTTT+TGG + chr7.2:82963882-82963901 MS.gene48575:CDS 35.0%
! AGAAAGGGATTGTTTGAGTT+TGG - chr7.2:82963662-82963681 None:intergenic 35.0%
! AGTGAGAAAGTGTAAGAGAA+AGG - chr7.2:82963678-82963697 None:intergenic 35.0%
! ATTGGGTTGTGAGAATCATT+AGG - chr7.2:82963730-82963749 None:intergenic 35.0%
! ATTGTTTGAGTTTGGGAAGA+AGG - chr7.2:82963654-82963673 None:intergenic 35.0%
! CCAAACTACGGATTTTCAAT+TGG + chr7.2:82963925-82963944 MS.gene48575:CDS 35.0%
! GAAAGGGATTGTTTGAGTTT+GGG - chr7.2:82963661-82963680 None:intergenic 35.0%
! GGTATTTCTACTTGTGAAGA+TGG - chr7.2:82963517-82963536 None:intergenic 35.0%
! GTGAGAAAGTGTAAGAGAAA+GGG - chr7.2:82963677-82963696 None:intergenic 35.0%
! TAGGTTTGAATATCGATTGC+AGG + chr7.2:82964400-82964419 MS.gene48575:CDS 35.0%
! TTGAGTGATTGGTTAAAGCA+AGG + chr7.2:82964138-82964157 MS.gene48575:CDS 35.0%
! TTGTTTGAGTTTGGGAAGAA+GGG - chr7.2:82963653-82963672 None:intergenic 35.0%
!! AAGGGTATTGAAGAAAAGTG+AGG - chr7.2:82963635-82963654 None:intergenic 35.0%
!! TGTCAAAACAAAAGGGTACT+AGG + chr7.2:82964274-82964293 MS.gene48575:CDS 35.0%
!!! GAGGTTTATAGCACTGATTT+TGG + chr7.2:82964672-82964691 MS.gene48575:CDS 35.0%
!!! TATAGCACTGATTTTGGTTG+TGG + chr7.2:82964678-82964697 MS.gene48575:CDS 35.0%
!!! TCACATCATGCTGTTTTAGA+TGG + chr7.2:82963955-82963974 MS.gene48575:CDS 35.0%
AACTCATGTGGCAAACAAAG+TGG - chr7.2:82964060-82964079 None:intergenic 40.0%
AAGAAAAGTGAGGTTTCGTG+TGG - chr7.2:82963625-82963644 None:intergenic 40.0%
ATCAGCATGAGATTCAGCTA+TGG - chr7.2:82963788-82963807 None:intergenic 40.0%
CAAATGAGATGACCCAAAAG+AGG - chr7.2:82963706-82963725 None:intergenic 40.0%
CCAAAGTATGTTGCAGGAAT+CGG - chr7.2:82964441-82964460 None:intergenic 40.0%
GAGCTGAAAATTGGTCATCA+TGG + chr7.2:82964586-82964605 MS.gene48575:CDS 40.0%
TTTGCTTCGCTCTTTGTCAA+AGG + chr7.2:82964822-82964841 MS.gene48575:CDS 40.0%
! AGTGATTGGTTAAAGCAAGG+TGG + chr7.2:82964141-82964160 MS.gene48575:CDS 40.0%
!! AATGGTGATGGTGTTGAGAT+AGG + chr7.2:82964768-82964787 MS.gene48575:CDS 40.0%
!! CTCTTTTGGGTCATCTCATT+TGG + chr7.2:82963704-82963723 MS.gene48575:CDS 40.0%
!! TGAAGTGTTGAGTGAAGCTT+TGG + chr7.2:82964536-82964555 MS.gene48575:CDS 40.0%
!! TGCTGGTTCACCTAAATTTG+AGG + chr7.2:82964653-82964672 MS.gene48575:CDS 40.0%
AGAGGAAGTGAGGTTTCTGA+AGG - chr7.2:82963538-82963557 None:intergenic 45.0%
CCGATTCCTGCAACATACTT+TGG + chr7.2:82964438-82964457 MS.gene48575:CDS 45.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 82963481 82964857 82963481 ID=MS.gene48575
chr7.2 mRNA 82963481 82964857 82963481 ID=MS.gene48575.t1;Parent=MS.gene48575
chr7.2 exon 82963481 82964857 82963481 ID=MS.gene48575.t1.exon1;Parent=MS.gene48575.t1
chr7.2 CDS 82963481 82964857 82963481 ID=cds.MS.gene48575.t1;Parent=MS.gene48575.t1
Gene Sequence

>MS.gene48575

ATGACGAAAATCATAGAAATTTTCAATGTAGCACCATCTTCACAAGTAGAAATACCTTCAGAAACCTCACTTCCTCTTACTTTCTTTGACATACTATGGTTAAGATTCCCACCTGTTCAAAGAATTTTCTTCTATGAGTTTCCACACGAAACCTCACTTTTCTTCAATACCCTTCTTCCCAAACTCAAACAATCCCTTTCTCTTACACTTTCTCACTTTTATCCTCTTTTGGGTCATCTCATTTGGCCTAATGATTCTCACAACCCAATCATCAAATTCATCAAAGGAAACACTCTTTCACTTACCATAGCTGAATCTCATGCTGATTTCAATCATTTATCTGGTAAGAATCTTTCTGAAGCTACTCAAATTCATGATCTTTTACCTAACTTGAATATTTCACATGAACAAGCTTCTGTTTTGGCTCTTCAAGTTACCATTTTTCCAAACTACGGATTTTCAATTGGTATTACTTCACATCATGCTGTTTTAGATGGTAAAACTTCAACTTCTTTTATCAAATCTTGGGCTTACCTATGTAGAAAGCTTAAAAATGAAGTATCTGAATTAGAAACACCACTTTGTTTGCCACATGAGTTTTGTCCTTTCTATGATAGAAATGTAATCAAGGATCCAAATGAATTTGAGGCAAAATATTTGAGTGATTGGTTAAAGCAAGGTGGAACAACCAATAGAAGCTTAATGGTTTGGGATTTTCAATTTCCAGAAGATTCATTTAGAGCATTATTTCAATTATCTCGTTTGGATATTGAAAAGCTTAAGGAATTTGTAGTGTCAAAACAAAAGGGTACTAGGAATGAGAATAAAAAAATTCACTTGTCAACATTTGTGGTATCTATTGCTTATGCATGGGTATGTAGAATAAAAGCAGAGAAAATTGAGAACAAAAATGCTTTGATAGGTTTGAATATCGATTGCAGGAATCGTTTAGAAGCACCGATTCCTGCAACATACTTTGGAAATTGTATTGGATTAAGACTTGCATTTGTTAAAACAAGTGATTTATTTGGAGAAAATGGACTAATTGTTGCTGTTGAAGTGTTGAGTGAAGCTTTGGAAACTTTAAAAGATGGTGTGTTGAATGGAGCTGAAAATTGGTCATCATGGTTACTTAAAGGTCTTGCCATTGCTGATGTTAAAACAATTGGTACTGCTGGTTCACCTAAATTTGAGGTTTATAGCACTGATTTTGGTTGTGGAAAACCAAAGAAAGTTGAAATGGTTTCTATAGATAGAACTGGTGCCTTTTCTCTTTCTGATTGTAGAAATGGTGATGGTGTTGAGATAGGTTTTGTGTCTAACAAAAAAGCAATGGAAGCTTTTGCTTCGCTCTTTGTCAAAGGCATTGCATCTTGA
Protein sequence

>MS.gene48575.t1

MTKIIEIFNVAPSSQVEIPSETSLPLTFFDILWLRFPPVQRIFFYEFPHETSLFFNTLLPKLKQSLSLTLSHFYPLLGHLIWPNDSHNPIIKFIKGNTLSLTIAESHADFNHLSGKNLSEATQIHDLLPNLNISHEQASVLALQVTIFPNYGFSIGITSHHAVLDGKTSTSFIKSWAYLCRKLKNEVSELETPLCLPHEFCPFYDRNVIKDPNEFEAKYLSDWLKQGGTTNRSLMVWDFQFPEDSFRALFQLSRLDIEKLKEFVVSKQKGTRNENKKIHLSTFVVSIAYAWVCRIKAEKIENKNALIGLNIDCRNRLEAPIPATYFGNCIGLRLAFVKTSDLFGENGLIVAVEVLSEALETLKDGVLNGAENWSSWLLKGLAIADVKTIGTAGSPKFEVYSTDFGCGKPKKVEMVSIDRTGAFSLSDCRNGDGVEIGFVSNKKAMEAFASLFVKGIAS