Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48742.t1 | XP_024638788.1 | 96 | 478 | 17 | 2 | 15 | 491 | 5 | 481 | 1.20E-255 | 892.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48742.t1 | F4I316 | 59.0 | 346 | 130 | 4 | 125 | 459 | 216 | 560 | 1.6e-101 | 371.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48742.t1 | I3S0K2 | 93.3 | 491 | 32 | 1 | 1 | 491 | 37 | 526 | 5.4e-255 | 889.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene48742 | 0.82558 | 4.34E-54 | -1.69E-46 |
| MS.gene050085 | MS.gene48742 | 0.801635 | 8.20E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene48742 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene48742 | 0.811398 | 7.14E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene48742 | 0.839914 | 1.19E-57 | -1.69E-46 |
| MS.gene051233 | MS.gene48742 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene48742 | 0.805638 | 1.21E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene48742 | 0.814946 | 1.19E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene48742 | 0.806543 | 7.82E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene48742 | 0.83184 | 1.33E-55 | -1.69E-46 |
| MS.gene057890 | MS.gene48742 | -0.808356 | 3.22E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene48742 | 0.80463 | 1.97E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene48742 | 0.800813 | 1.21E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene48742 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene48742 | 0.841981 | 3.42E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene48742 | 0.801666 | 8.09E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene48742 | 0.821204 | 4.57E-53 | -1.69E-46 |
| MS.gene060763 | MS.gene48742 | 0.803809 | 2.92E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene48742 | 0.820216 | 7.71E-53 | -1.69E-46 |
| MS.gene060870 | MS.gene48742 | 0.816528 | 5.28E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene48742 | 0.804982 | 1.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48742.t1 | MTR_4g030960 | 93.075 | 491 | 33 | 1 | 1 | 491 | 37 | 526 | 0.0 | 928 |
| MS.gene48742.t1 | MTR_1g069420 | 83.824 | 476 | 76 | 1 | 17 | 491 | 42 | 517 | 0.0 | 795 |
| MS.gene48742.t1 | MTR_3g006320 | 63.002 | 473 | 159 | 7 | 20 | 491 | 52 | 509 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48742.t1 | AT1G71360 | 52.672 | 393 | 181 | 3 | 93 | 480 | 125 | 517 | 5.95e-135 | 402 |
| MS.gene48742.t1 | AT1G71360 | 52.538 | 394 | 182 | 3 | 92 | 480 | 150 | 543 | 1.99e-134 | 402 |
| MS.gene48742.t1 | AT1G22882 | 51.185 | 422 | 163 | 6 | 85 | 476 | 169 | 577 | 1.70e-133 | 401 |
| MS.gene48742.t1 | AT4G23950 | 44.838 | 339 | 152 | 5 | 163 | 491 | 170 | 483 | 1.66e-85 | 274 |
| MS.gene48742.t1 | AT4G23950 | 44.706 | 340 | 152 | 6 | 163 | 491 | 170 | 484 | 9.52e-84 | 269 |
Find 95 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTATCTCACCCATTT+TGG | 0.194693 | 4.4:+72754267 | None:intergenic |
| AGACGTAAATTTATTTGTTT+TGG | 0.203943 | 4.4:-72753875 | MS.gene48742:CDS |
| TTGTTCTTAAAGAGCCAAAA+TGG | 0.262822 | 4.4:-72754281 | MS.gene48742:CDS |
| ATCCCTGCTTAATATATTAG+AGG | 0.264131 | 4.4:+72754524 | None:intergenic |
| GGCTTTGAAGATTCAACTTC+AGG | 0.266206 | 4.4:+72754250 | None:intergenic |
| TTTCGGTTGGATTATCAAAA+TGG | 0.280038 | 4.4:-72755022 | MS.gene48742:CDS |
| GATTTCAAAGTCTTTCAAAT+TGG | 0.322234 | 4.4:+72754386 | None:intergenic |
| TGAACTTTCCAACAGATGTT+TGG | 0.325943 | 4.4:-72754353 | MS.gene48742:CDS |
| AAGTACGAACTTTCTGCATT+AGG | 0.328303 | 4.4:+72753899 | None:intergenic |
| ACATGAAACGGCAAACATTA+AGG | 0.334447 | 4.4:-72753989 | MS.gene48742:CDS |
| GAACTTTCCAACAGATGTTT+GGG | 0.347879 | 4.4:-72754352 | MS.gene48742:CDS |
| AATGTTTGCCGTTTCATGTT+TGG | 0.366928 | 4.4:+72753993 | None:intergenic |
| AAAGAATCTGATTGATCATC+AGG | 0.373068 | 4.4:-72753746 | MS.gene48742:CDS |
| CAACAAGTTGGCAGGATGCC+TGG | 0.376214 | 4.4:-72753940 | MS.gene48742:CDS |
| CGGATTTCTTCAACTGGATC+AGG | 0.377073 | 4.4:+72753964 | None:intergenic |
| TTTATTAGAAGCTAAAACTT+TGG | 0.377508 | 4.4:+72754560 | None:intergenic |
| TCGAAGTGTAATACATAGAT+TGG | 0.392545 | 4.4:-72754628 | MS.gene48742:CDS |
| CAGATGTTTGGGATTTCCTT+GGG | 0.397990 | 4.4:-72754341 | MS.gene48742:CDS |
| CGAAATCCGTGTTCTGTTGT+GGG | 0.399830 | 4.4:-72754486 | MS.gene48742:CDS |
| TGTTGACGGATTTCTTCAAC+TGG | 0.401246 | 4.4:+72753958 | None:intergenic |
| ATGCTAGTGATCTCAATTCA+TGG | 0.403512 | 4.4:-72753602 | MS.gene48742:CDS |
| AACTACATGATCATCTCTAT+TGG | 0.410887 | 4.4:+72754788 | None:intergenic |
| ATGGAAGTCTCAAGTTTCTT+CGG | 0.419873 | 4.4:-72753583 | MS.gene48742:CDS |
| ACAGATGTTTGGGATTTCCT+TGG | 0.426261 | 4.4:-72754342 | MS.gene48742:CDS |
| TTATCTCGGGCTGTGCCTCC+TGG | 0.432906 | 4.4:-72754711 | MS.gene48742:CDS |
| AGATGGATCTGAAGAGCTTT+CGG | 0.433864 | 4.4:-72755039 | MS.gene48742:CDS |
| TCGAAATCCGTGTTCTGTTG+TGG | 0.436590 | 4.4:-72754487 | MS.gene48742:CDS |
| TTGAAAGACTTTGAAATCCA+TGG | 0.438972 | 4.4:-72754381 | MS.gene48742:CDS |
| CAAGACAATCTACTTGCATC+TGG | 0.441632 | 4.4:-72754135 | MS.gene48742:CDS |
| TTGAATCTTCAAAGCCACTA+TGG | 0.444477 | 4.4:-72754243 | MS.gene48742:CDS |
| CAATTATGCTTCGGCATCAA+AGG | 0.453952 | 4.4:-72754586 | MS.gene48742:CDS |
| CGATGCTTGCTTTCCGTCAG+AGG | 0.460007 | 4.4:-72754934 | MS.gene48742:CDS |
| GTGCCTCTAATATATTAAGC+AGG | 0.461361 | 4.4:-72754527 | MS.gene48742:CDS |
| AACAAGTTGGCAGGATGCCT+GGG | 0.465917 | 4.4:-72753939 | MS.gene48742:CDS |
| GGTGGAGATGCTGAGGCTAA+TGG | 0.472870 | 4.4:-72754894 | MS.gene48742:CDS |
| TTGAGCATGCCTCACATTCG+AGG | 0.476058 | 4.4:+72754308 | None:intergenic |
| AAAAGTCTGATATCTTATCT+CGG | 0.477926 | 4.4:-72754725 | MS.gene48742:CDS |
| ATCAGTTCTAAAGTTAAGTC+AGG | 0.481166 | 4.4:-72754663 | MS.gene48742:CDS |
| CTCGTCTTCCAAACATGAAA+CGG | 0.485332 | 4.4:-72754001 | MS.gene48742:CDS |
| TGTTCAATCACAGCAGGATC+AGG | 0.490358 | 4.4:+72754075 | None:intergenic |
| GGATCTGAAGAGCTTTCGGT+TGG | 0.496922 | 4.4:-72755035 | MS.gene48742:CDS |
| GCTTCTAATAAAGAAGGAAA+AGG | 0.498751 | 4.4:-72754549 | MS.gene48742:CDS |
| TGTTCTTAAAGAGCCAAAAT+GGG | 0.500054 | 4.4:-72754280 | MS.gene48742:CDS |
| GCATCCTGCCAACTTGTTGA+CGG | 0.500920 | 4.4:+72753944 | None:intergenic |
| AAAGTCTGATATCTTATCTC+GGG | 0.500962 | 4.4:-72754724 | MS.gene48742:CDS |
| AGGAAATCCCAAACATCTGT+TGG | 0.507573 | 4.4:+72754345 | None:intergenic |
| GTCTTGATGAATTCAAGAGC+AGG | 0.514995 | 4.4:-72754689 | MS.gene48742:CDS |
| TGCAGAATACAATTATGCTT+CGG | 0.521102 | 4.4:-72754595 | MS.gene48742:CDS |
| TGTGGGTAAATTTGTCATCA+TGG | 0.521454 | 4.4:-72754469 | MS.gene48742:CDS |
| TTGGAAAGTTCAGACTTCCA+TGG | 0.523368 | 4.4:+72754364 | None:intergenic |
| TTAGTGAGTCACACAATGGT+AGG | 0.534117 | 4.4:-72754866 | MS.gene48742:CDS |
| CAGAGATTTCACAAAATCCA+TGG | 0.536981 | 4.4:+72754988 | None:intergenic |
| TGAACATGTTCAATCACAGC+AGG | 0.538033 | 4.4:+72754069 | None:intergenic |
| CTCTTGAATTCATCAAGACC+AGG | 0.538218 | 4.4:+72754693 | None:intergenic |
| GAGGCTTTAATATACTCTAA+AGG | 0.542963 | 4.4:-72754915 | MS.gene48742:CDS |
| GAAGACGAGATATCTGAAGC+AGG | 0.544361 | 4.4:+72754015 | None:intergenic |
| TCACACAATGGTAGGGAAAG+TGG | 0.547155 | 4.4:-72754858 | MS.gene48742:CDS |
| AAATCCGTCAACAAGTTGGC+AGG | 0.547210 | 4.4:-72753948 | MS.gene48742:CDS |
| AATTATGCTTCGGCATCAAA+GGG | 0.548259 | 4.4:-72754585 | MS.gene48742:CDS |
| CGAGATATCTGAAGCAGGGA+CGG | 0.554279 | 4.4:+72754020 | None:intergenic |
| AGTCTTTCAAATTGGAAGAG+TGG | 0.555467 | 4.4:+72754394 | None:intergenic |
| TAATTGTATTCTGCACCGCC+AGG | 0.555812 | 4.4:+72754603 | None:intergenic |
| AATCTACTTGCATCTGGAGA+AGG | 0.555840 | 4.4:-72754129 | MS.gene48742:CDS |
| CAATCACAGCAGGATCAGGA+TGG | 0.558041 | 4.4:+72754079 | None:intergenic |
| GGAACTTTCAGAAGAAACCT+TGG | 0.560587 | 4.4:-72754448 | MS.gene48742:CDS |
| AGTGGTGCTTATGCGGTACC+TGG | 0.565403 | 4.4:-72754840 | MS.gene48742:CDS |
| TCTAAAGTTAAGTCAGGCAC+TGG | 0.565512 | 4.4:-72754657 | MS.gene48742:CDS |
| CGAATGTGAGGCATGCTCAA+AGG | 0.565768 | 4.4:-72754305 | MS.gene48742:CDS |
| CTCTAAAGGTGGAGATGCTG+AGG | 0.568214 | 4.4:-72754901 | MS.gene48742:CDS |
| GAGTATATTAAAGCCTCTGA+CGG | 0.573061 | 4.4:+72754921 | None:intergenic |
| AATCACAGCAGGATCAGGAT+GGG | 0.580916 | 4.4:+72754080 | None:intergenic |
| TAGTGAGTCACACAATGGTA+GGG | 0.581433 | 4.4:-72754865 | MS.gene48742:CDS |
| AATAAAATTCAGAACCATAG+TGG | 0.582520 | 4.4:+72754229 | None:intergenic |
| ATCCTCCAGCATCCTCTCAA+CGG | 0.584718 | 4.4:+72754170 | None:intergenic |
| ATCTTGAGAACAGTATCCCC+AGG | 0.590052 | 4.4:+72753922 | None:intergenic |
| GAAGAAATCCGTCAACAAGT+TGG | 0.592762 | 4.4:-72753952 | MS.gene48742:CDS |
| TGCCTCTAATATATTAAGCA+GGG | 0.599484 | 4.4:-72754526 | MS.gene48742:CDS |
| GGATGCCGTTGAGAGGATGC+TGG | 0.600025 | 4.4:-72754175 | MS.gene48742:CDS |
| GTAATACATAGATTGGAGCC+TGG | 0.603227 | 4.4:-72754621 | MS.gene48742:CDS |
| ATCACAGCAGGATCAGGATG+GGG | 0.610550 | 4.4:+72754081 | None:intergenic |
| TTGGTGTGGATGCCGTTGAG+AGG | 0.612570 | 4.4:-72754182 | MS.gene48742:CDS |
| AATTTACCCACAACAGAACA+CGG | 0.613650 | 4.4:+72754480 | None:intergenic |
| TATTTCTATAGTATCTACCA+AGG | 0.616012 | 4.4:+72754431 | None:intergenic |
| AAAGAGTATAGCAAAGACAC+AGG | 0.618523 | 4.4:-72753808 | MS.gene48742:CDS |
| AAATGGAATGAAGTGAACCA+TGG | 0.624684 | 4.4:-72755005 | MS.gene48742:CDS |
| GCTTTAATATACTCTAAAGG+TGG | 0.636410 | 4.4:-72754912 | MS.gene48742:CDS |
| TAGGGAAAGTGGTGCTTATG+CGG | 0.637556 | 4.4:-72754847 | MS.gene48742:CDS |
| TCGAGGCAGTAAAATTCCCA+AGG | 0.650182 | 4.4:+72754325 | None:intergenic |
| AAGACGAGATATCTGAAGCA+GGG | 0.651569 | 4.4:+72754016 | None:intergenic |
| TCTTGATGAATTCAAGAGCA+GGG | 0.653108 | 4.4:-72754688 | MS.gene48742:CDS |
| ACAAGTTGGCAGGATGCCTG+GGG | 0.671945 | 4.4:-72753938 | MS.gene48742:CDS |
| TTAGTTAGTGAGTCACACAA+TGG | 0.699748 | 4.4:-72754870 | MS.gene48742:CDS |
| TTGAATTCATCAAGACCAGG+AGG | 0.717792 | 4.4:+72754696 | None:intergenic |
| TGCCGTTGAGAGGATGCTGG+AGG | 0.725275 | 4.4:-72754172 | MS.gene48742:CDS |
| ATACATAGATTGGAGCCTGG+CGG | 0.731549 | 4.4:-72754618 | MS.gene48742:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAATAGAAAGTAGTA+TGG | + | chr4.4:72754990-72755009 | None:intergenic | 20.0% |
| !! | TTTATTAGAAGCTAAAACTT+TGG | + | chr4.4:72754086-72754105 | None:intergenic | 20.0% |
| !!! | AGACGTAAATTTATTTGTTT+TGG | - | chr4.4:72754768-72754787 | MS.gene48742:CDS | 20.0% |
| !!! | ATACTACTTTCTATTCATTT+TGG | - | chr4.4:72754989-72755008 | MS.gene48742:CDS | 20.0% |
| !!! | TAAATTTATTTGTTTTGGAG+CGG | - | chr4.4:72754773-72754792 | MS.gene48742:CDS | 20.0% |
| !!! | TTCATTTTGGAAATGATTTT+TGG | - | chr4.4:72755002-72755021 | MS.gene48742:CDS | 20.0% |
| !!! | TTTTACATCATTTTCATGTT+TGG | + | chr4.4:72753900-72753919 | None:intergenic | 20.0% |
| !!! | TTTTCTTTATTTATATCACC+AGG | + | chr4.4:72753824-72753843 | None:intergenic | 20.0% |
| ! | AAAAGTCTGATATCTTATCT+CGG | - | chr4.4:72753918-72753937 | MS.gene48742:CDS | 25.0% |
| ! | AATAAAATTCAGAACCATAG+TGG | + | chr4.4:72754417-72754436 | None:intergenic | 25.0% |
| ! | GATTTCAAAGTCTTTCAAAT+TGG | + | chr4.4:72754260-72754279 | None:intergenic | 25.0% |
| ! | GTTCATAAAAAAACTCTTGA+GGG | - | chr4.4:72754592-72754611 | MS.gene48742:CDS | 25.0% |
| ! | TGTTCATAAAAAAACTCTTG+AGG | - | chr4.4:72754591-72754610 | MS.gene48742:CDS | 25.0% |
| ! | TTCATAAAAAAACTCTTGAG+GGG | - | chr4.4:72754593-72754612 | MS.gene48742:CDS | 25.0% |
| !! | TATTTCTATAGTATCTACCA+AGG | + | chr4.4:72754215-72754234 | None:intergenic | 25.0% |
| !!! | AGTCTTATTTTGTATGTAGA+TGG | - | chr4.4:72753587-72753606 | MS.gene48742:CDS | 25.0% |
| !!! | GTTTTAGCTTCTAATAAAGA+AGG | - | chr4.4:72754088-72754107 | MS.gene48742:CDS | 25.0% |
| AAAGAATCTGATTGATCATC+AGG | - | chr4.4:72754897-72754916 | MS.gene48742:CDS | 30.0% | |
| AAAGTCTGATATCTTATCTC+GGG | - | chr4.4:72753919-72753938 | MS.gene48742:CDS | 30.0% | |
| AACTACATGATCATCTCTAT+TGG | + | chr4.4:72753858-72753877 | None:intergenic | 30.0% | |
| ATCCCTGCTTAATATATTAG+AGG | + | chr4.4:72754122-72754141 | None:intergenic | 30.0% | |
| GCTTCTAATAAAGAAGGAAA+AGG | - | chr4.4:72754094-72754113 | MS.gene48742:CDS | 30.0% | |
| TCGAAGTGTAATACATAGAT+TGG | - | chr4.4:72754015-72754034 | MS.gene48742:CDS | 30.0% | |
| TGCAGAATACAATTATGCTT+CGG | - | chr4.4:72754048-72754067 | MS.gene48742:CDS | 30.0% | |
| TGCCTCTAATATATTAAGCA+GGG | - | chr4.4:72754117-72754136 | MS.gene48742:CDS | 30.0% | |
| TGTTCTTAAAGAGCCAAAAT+GGG | - | chr4.4:72754363-72754382 | MS.gene48742:CDS | 30.0% | |
| TTGTTCTTAAAGAGCCAAAA+TGG | - | chr4.4:72754362-72754381 | MS.gene48742:CDS | 30.0% | |
| TTTCGGTTGGATTATCAAAA+TGG | - | chr4.4:72753621-72753640 | MS.gene48742:intron | 30.0% | |
| ! | GAGGCTTTAATATACTCTAA+AGG | - | chr4.4:72753728-72753747 | MS.gene48742:intron | 30.0% |
| ! | GCTTTAATATACTCTAAAGG+TGG | - | chr4.4:72753731-72753750 | MS.gene48742:intron | 30.0% |
| !! | ATCAGTTCTAAAGTTAAGTC+AGG | - | chr4.4:72753980-72753999 | MS.gene48742:CDS | 30.0% |
| !! | TTGAAAGACTTTGAAATCCA+TGG | - | chr4.4:72754262-72754281 | MS.gene48742:CDS | 30.0% |
| !!! | TTCAAGATAATGCTGTTTTG+AGG | - | chr4.4:72755098-72755117 | MS.gene48742:CDS | 30.0% |
| AAATGGAATGAAGTGAACCA+TGG | - | chr4.4:72753638-72753657 | MS.gene48742:intron | 35.0% | |
| AAGTACGAACTTTCTGCATT+AGG | + | chr4.4:72754747-72754766 | None:intergenic | 35.0% | |
| AATTATGCTTCGGCATCAAA+GGG | - | chr4.4:72754058-72754077 | MS.gene48742:CDS | 35.0% | |
| AATTTACCCACAACAGAACA+CGG | + | chr4.4:72754166-72754185 | None:intergenic | 35.0% | |
| ACATGAAACGGCAAACATTA+AGG | - | chr4.4:72754654-72754673 | MS.gene48742:CDS | 35.0% | |
| AGTCTTTCAAATTGGAAGAG+TGG | + | chr4.4:72754252-72754271 | None:intergenic | 35.0% | |
| ATGCTAGTGATCTCAATTCA+TGG | - | chr4.4:72755041-72755060 | MS.gene48742:CDS | 35.0% | |
| ATGGAAGTCTCAAGTTTCTT+CGG | - | chr4.4:72755060-72755079 | MS.gene48742:CDS | 35.0% | |
| CAGAGATTTCACAAAATCCA+TGG | + | chr4.4:72753658-72753677 | None:intergenic | 35.0% | |
| GAACTTTCCAACAGATGTTT+GGG | - | chr4.4:72754291-72754310 | MS.gene48742:CDS | 35.0% | |
| GAGTATATTAAAGCCTCTGA+CGG | + | chr4.4:72753725-72753744 | None:intergenic | 35.0% | |
| GTGCCTCTAATATATTAAGC+AGG | - | chr4.4:72754116-72754135 | MS.gene48742:CDS | 35.0% | |
| TCTTGATGAATTCAAGAGCA+GGG | - | chr4.4:72753955-72753974 | MS.gene48742:CDS | 35.0% | |
| TGAACTTTCCAACAGATGTT+TGG | - | chr4.4:72754290-72754309 | MS.gene48742:CDS | 35.0% | |
| TGTGGGTAAATTTGTCATCA+TGG | - | chr4.4:72754174-72754193 | MS.gene48742:CDS | 35.0% | |
| TTAGTTAGTGAGTCACACAA+TGG | - | chr4.4:72753773-72753792 | MS.gene48742:CDS | 35.0% | |
| TTGAATCTTCAAAGCCACTA+TGG | - | chr4.4:72754400-72754419 | MS.gene48742:CDS | 35.0% | |
| ! | AAAGAGTATAGCAAAGACAC+AGG | - | chr4.4:72754835-72754854 | MS.gene48742:CDS | 35.0% |
| ! | AATGTTTGCCGTTTCATGTT+TGG | + | chr4.4:72754653-72754672 | None:intergenic | 35.0% |
| !! | CTAAGCGTTGTTGAAGTTTT+TGG | - | chr4.4:72754442-72754461 | MS.gene48742:CDS | 35.0% |
| !!! | AAATGATTTTTGGCTCATGC+AGG | - | chr4.4:72755012-72755031 | MS.gene48742:CDS | 35.0% |
| !!! | ATTTGTTTTGGAGCGGTATA+TGG | - | chr4.4:72754780-72754799 | MS.gene48742:CDS | 35.0% |
| AATCTACTTGCATCTGGAGA+AGG | - | chr4.4:72754514-72754533 | MS.gene48742:CDS | 40.0% | |
| AGATGGATCTGAAGAGCTTT+CGG | - | chr4.4:72753604-72753623 | MS.gene48742:CDS | 40.0% | |
| AGGAAATCCCAAACATCTGT+TGG | + | chr4.4:72754301-72754320 | None:intergenic | 40.0% | |
| CAAGACAATCTACTTGCATC+TGG | - | chr4.4:72754508-72754527 | MS.gene48742:CDS | 40.0% | |
| CAATTATGCTTCGGCATCAA+AGG | - | chr4.4:72754057-72754076 | MS.gene48742:CDS | 40.0% | |
| CTCGTCTTCCAAACATGAAA+CGG | - | chr4.4:72754642-72754661 | MS.gene48742:CDS | 40.0% | |
| CTCTTGAATTCATCAAGACC+AGG | + | chr4.4:72753953-72753972 | None:intergenic | 40.0% | |
| GAAGAAATCCGTCAACAAGT+TGG | - | chr4.4:72754691-72754710 | MS.gene48742:CDS | 40.0% | |
| GGAACTTTCAGAAGAAACCT+TGG | - | chr4.4:72754195-72754214 | MS.gene48742:CDS | 40.0% | |
| GTAATACATAGATTGGAGCC+TGG | - | chr4.4:72754022-72754041 | MS.gene48742:CDS | 40.0% | |
| GTCTTGATGAATTCAAGAGC+AGG | - | chr4.4:72753954-72753973 | MS.gene48742:CDS | 40.0% | |
| TAGTGAGTCACACAATGGTA+GGG | - | chr4.4:72753778-72753797 | MS.gene48742:CDS | 40.0% | |
| TGAACATGTTCAATCACAGC+AGG | + | chr4.4:72754577-72754596 | None:intergenic | 40.0% | |
| TTAGTGAGTCACACAATGGT+AGG | - | chr4.4:72753777-72753796 | MS.gene48742:CDS | 40.0% | |
| TTGAATTCATCAAGACCAGG+AGG | + | chr4.4:72753950-72753969 | None:intergenic | 40.0% | |
| TTGGAAAGTTCAGACTTCCA+TGG | + | chr4.4:72754282-72754301 | None:intergenic | 40.0% | |
| ! | AAGACGAGATATCTGAAGCA+GGG | + | chr4.4:72754630-72754649 | None:intergenic | 40.0% |
| ! | ACAGATGTTTGGGATTTCCT+TGG | - | chr4.4:72754301-72754320 | MS.gene48742:CDS | 40.0% |
| ! | ATTTTACTGCCTCGAATGTG+AGG | - | chr4.4:72754326-72754345 | MS.gene48742:CDS | 40.0% |
| ! | CAGATGTTTGGGATTTCCTT+GGG | - | chr4.4:72754302-72754321 | MS.gene48742:CDS | 40.0% |
| ! | TCTAAAGTTAAGTCAGGCAC+TGG | - | chr4.4:72753986-72754005 | MS.gene48742:CDS | 40.0% |
| ! | TTCAGGTATCTCACCCATTT+TGG | + | chr4.4:72754379-72754398 | None:intergenic | 40.0% |
| !! | GGCTTTGAAGATTCAACTTC+AGG | + | chr4.4:72754396-72754415 | None:intergenic | 40.0% |
| !! | TGTTGACGGATTTCTTCAAC+TGG | + | chr4.4:72754688-72754707 | None:intergenic | 40.0% |
| !!! | CGTTGTTGAAGTTTTTGGTG+TGG | - | chr4.4:72754447-72754466 | MS.gene48742:CDS | 40.0% |
| AATCACAGCAGGATCAGGAT+GGG | + | chr4.4:72754566-72754585 | None:intergenic | 45.0% | |
| ATACATAGATTGGAGCCTGG+CGG | - | chr4.4:72754025-72754044 | MS.gene48742:CDS | 45.0% | |
| ATCTTGAGAACAGTATCCCC+AGG | + | chr4.4:72754724-72754743 | None:intergenic | 45.0% | |
| CGAAATCCGTGTTCTGTTGT+GGG | - | chr4.4:72754157-72754176 | MS.gene48742:CDS | 45.0% | |
| CGGATTTCTTCAACTGGATC+AGG | + | chr4.4:72754682-72754701 | None:intergenic | 45.0% | |
| TAATTGTATTCTGCACCGCC+AGG | + | chr4.4:72754043-72754062 | None:intergenic | 45.0% | |
| TAGGGAAAGTGGTGCTTATG+CGG | - | chr4.4:72753796-72753815 | MS.gene48742:CDS | 45.0% | |
| TCACACAATGGTAGGGAAAG+TGG | - | chr4.4:72753785-72753804 | MS.gene48742:CDS | 45.0% | |
| TCGAAATCCGTGTTCTGTTG+TGG | - | chr4.4:72754156-72754175 | MS.gene48742:CDS | 45.0% | |
| TCGAGGCAGTAAAATTCCCA+AGG | + | chr4.4:72754321-72754340 | None:intergenic | 45.0% | |
| TGTTCAATCACAGCAGGATC+AGG | + | chr4.4:72754571-72754590 | None:intergenic | 45.0% | |
| ! | AAATCCGTCAACAAGTTGGC+AGG | - | chr4.4:72754695-72754714 | MS.gene48742:CDS | 45.0% |
| ! | GAAGACGAGATATCTGAAGC+AGG | + | chr4.4:72754631-72754650 | None:intergenic | 45.0% |
| ATCACAGCAGGATCAGGATG+GGG | + | chr4.4:72754565-72754584 | None:intergenic | 50.0% | |
| ATCCTCCAGCATCCTCTCAA+CGG | + | chr4.4:72754476-72754495 | None:intergenic | 50.0% | |
| CAATCACAGCAGGATCAGGA+TGG | + | chr4.4:72754567-72754586 | None:intergenic | 50.0% | |
| CGAATGTGAGGCATGCTCAA+AGG | - | chr4.4:72754338-72754357 | MS.gene48742:CDS | 50.0% | |
| GGATCTGAAGAGCTTTCGGT+TGG | - | chr4.4:72753608-72753627 | MS.gene48742:CDS | 50.0% | |
| TTGAGCATGCCTCACATTCG+AGG | + | chr4.4:72754338-72754357 | None:intergenic | 50.0% | |
| ! | AACAAGTTGGCAGGATGCCT+GGG | - | chr4.4:72754704-72754723 | MS.gene48742:CDS | 50.0% |
| ! | CGAGATATCTGAAGCAGGGA+CGG | + | chr4.4:72754626-72754645 | None:intergenic | 50.0% |
| ! | CTCTAAAGGTGGAGATGCTG+AGG | - | chr4.4:72753742-72753761 | MS.gene48742:CDS | 50.0% |
| !! | GCATCCTGCCAACTTGTTGA+CGG | + | chr4.4:72754702-72754721 | None:intergenic | 50.0% |
| AGTGGTGCTTATGCGGTACC+TGG | - | chr4.4:72753803-72753822 | MS.gene48742:CDS | 55.0% | |
| CGATGCTTGCTTTCCGTCAG+AGG | - | chr4.4:72753709-72753728 | MS.gene48742:intron | 55.0% | |
| GGTGGAGATGCTGAGGCTAA+TGG | - | chr4.4:72753749-72753768 | MS.gene48742:CDS | 55.0% | |
| TTGGTGTGGATGCCGTTGAG+AGG | - | chr4.4:72754461-72754480 | MS.gene48742:CDS | 55.0% | |
| ! | ACAAGTTGGCAGGATGCCTG+GGG | - | chr4.4:72754705-72754724 | MS.gene48742:CDS | 55.0% |
| ! | CAACAAGTTGGCAGGATGCC+TGG | - | chr4.4:72754703-72754722 | MS.gene48742:CDS | 55.0% |
| GGATGCCGTTGAGAGGATGC+TGG | - | chr4.4:72754468-72754487 | MS.gene48742:CDS | 60.0% | |
| TGCCGTTGAGAGGATGCTGG+AGG | - | chr4.4:72754471-72754490 | MS.gene48742:CDS | 60.0% | |
| TTATCTCGGGCTGTGCCTCC+TGG | - | chr4.4:72753932-72753951 | MS.gene48742:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 72753542 | 72755123 | 72753542 | ID=MS.gene48742 |
| chr4.4 | mRNA | 72753542 | 72755123 | 72753542 | ID=MS.gene48742.t1;Parent=MS.gene48742 |
| chr4.4 | exon | 72753738 | 72755123 | 72753738 | ID=MS.gene48742.t1.exon1;Parent=MS.gene48742.t1 |
| chr4.4 | CDS | 72753738 | 72755123 | 72753738 | ID=cds.MS.gene48742.t1;Parent=MS.gene48742.t1 |
| chr4.4 | exon | 72753542 | 72753631 | 72753542 | ID=MS.gene48742.t1.exon2;Parent=MS.gene48742.t1 |
| chr4.4 | CDS | 72753542 | 72753631 | 72753542 | ID=cds.MS.gene48742.t1;Parent=MS.gene48742.t1 |
| Gene Sequence |
| Protein sequence |
