Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49051.t1 | XP_003592304.1 | 93.5 | 291 | 19 | 0 | 1 | 291 | 1 | 291 | 5.60E-157 | 563.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49051.t1 | Q9LEX0 | 58.9 | 282 | 112 | 2 | 1 | 281 | 1 | 279 | 4.1e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49051.t1 | G7IAQ2 | 93.5 | 291 | 19 | 0 | 1 | 291 | 1 | 291 | 4.0e-157 | 563.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49051 | MS.gene033388 | PPI |
| MS.gene49051 | MS.gene011426 | PPI |
| MS.gene49051 | MS.gene72988 | PPI |
| MS.gene49051 | MS.gene015546 | PPI |
| MS.gene20125 | MS.gene49051 | PPI |
| MS.gene015544 | MS.gene49051 | PPI |
| MS.gene072814 | MS.gene49051 | PPI |
| MS.gene22617 | MS.gene49051 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49051.t1 | MTR_1g101390 | 95.189 | 291 | 14 | 0 | 1 | 291 | 1 | 291 | 0.0 | 550 |
| MS.gene49051.t1 | MTR_0113s0040 | 73.145 | 283 | 76 | 0 | 9 | 291 | 3 | 285 | 2.53e-158 | 442 |
| MS.gene49051.t1 | MTR_0002s0020 | 59.155 | 284 | 105 | 3 | 1 | 279 | 1 | 278 | 1.30e-123 | 355 |
| MS.gene49051.t1 | MTR_4g102770 | 61.538 | 260 | 99 | 1 | 28 | 286 | 19 | 278 | 2.11e-119 | 344 |
| MS.gene49051.t1 | MTR_5g010800 | 56.134 | 269 | 114 | 3 | 19 | 286 | 10 | 275 | 4.42e-111 | 323 |
| MS.gene49051.t1 | MTR_7g103380 | 52.349 | 298 | 122 | 2 | 1 | 287 | 1 | 289 | 3.65e-110 | 321 |
| MS.gene49051.t1 | MTR_7g112560 | 23.077 | 273 | 178 | 6 | 31 | 286 | 4 | 261 | 5.73e-26 | 103 |
| MS.gene49051.t1 | MTR_7g112550 | 25.352 | 284 | 184 | 6 | 23 | 281 | 2 | 282 | 7.74e-25 | 101 |
| MS.gene49051.t1 | MTR_1g079260 | 29.185 | 233 | 149 | 4 | 26 | 257 | 2 | 219 | 1.26e-24 | 100 |
| MS.gene49051.t1 | MTR_1g079140 | 38.462 | 143 | 85 | 2 | 30 | 169 | 15 | 157 | 1.35e-23 | 98.2 |
| MS.gene49051.t1 | MTR_4g023570 | 24.125 | 257 | 173 | 6 | 31 | 285 | 4 | 240 | 1.56e-23 | 96.7 |
| MS.gene49051.t1 | MTR_1g100597 | 28.070 | 285 | 165 | 8 | 26 | 283 | 2 | 273 | 1.96e-22 | 94.4 |
| MS.gene49051.t1 | MTR_1g079460 | 35.915 | 142 | 89 | 2 | 30 | 169 | 6 | 147 | 3.05e-21 | 90.9 |
| MS.gene49051.t1 | MTR_1g083580 | 34.965 | 143 | 91 | 2 | 31 | 171 | 11 | 153 | 4.45e-21 | 90.9 |
| MS.gene49051.t1 | MTR_1g079180 | 34.932 | 146 | 93 | 2 | 26 | 169 | 2 | 147 | 7.17e-21 | 90.1 |
| MS.gene49051.t1 | MTR_1g079380 | 35.333 | 150 | 94 | 2 | 26 | 174 | 2 | 149 | 2.49e-19 | 86.3 |
| MS.gene49051.t1 | MTR_1g079370 | 33.133 | 166 | 104 | 4 | 26 | 186 | 2 | 165 | 3.58e-19 | 85.1 |
| MS.gene49051.t1 | MTR_3g452600 | 29.032 | 279 | 151 | 9 | 28 | 281 | 10 | 266 | 3.61e-19 | 85.5 |
| MS.gene49051.t1 | MTR_1g100613 | 37.984 | 129 | 77 | 2 | 45 | 172 | 6 | 132 | 4.76e-19 | 84.7 |
| MS.gene49051.t1 | MTR_1g079230 | 27.848 | 237 | 150 | 6 | 26 | 255 | 2 | 224 | 3.27e-18 | 82.8 |
| MS.gene49051.t1 | MTR_1g079200 | 33.562 | 146 | 93 | 3 | 30 | 174 | 6 | 148 | 5.68e-18 | 82.0 |
| MS.gene49051.t1 | MTR_1g079410 | 33.333 | 144 | 93 | 2 | 31 | 171 | 11 | 154 | 4.99e-16 | 76.6 |
| MS.gene49051.t1 | MTR_3g450990 | 27.368 | 285 | 164 | 10 | 28 | 281 | 10 | 282 | 2.02e-15 | 75.1 |
| MS.gene49051.t1 | MTR_1g079850 | 31.724 | 145 | 96 | 2 | 30 | 171 | 6 | 150 | 3.88e-15 | 74.3 |
| MS.gene49051.t1 | MTR_1g079400 | 27.979 | 193 | 133 | 4 | 18 | 205 | 2 | 193 | 2.06e-14 | 72.0 |
| MS.gene49051.t1 | MTR_1g079250 | 32.639 | 144 | 95 | 2 | 30 | 171 | 6 | 149 | 5.13e-14 | 71.2 |
| MS.gene49051.t1 | MTR_2g079100 | 26.383 | 235 | 147 | 5 | 21 | 251 | 2 | 214 | 9.54e-14 | 70.1 |
| MS.gene49051.t1 | MTR_1g079350 | 33.557 | 149 | 85 | 6 | 30 | 169 | 6 | 149 | 4.29e-12 | 65.5 |
| MS.gene49051.t1 | MTR_3g006850 | 30.625 | 160 | 91 | 5 | 26 | 169 | 15 | 170 | 4.72e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49051.t1 | AT3G61060 | 59.929 | 282 | 109 | 3 | 1 | 281 | 1 | 279 | 1.67e-127 | 365 |
| MS.gene49051.t1 | AT3G61060 | 59.717 | 283 | 109 | 4 | 1 | 281 | 1 | 280 | 9.88e-126 | 360 |
| MS.gene49051.t1 | AT5G52120 | 55.390 | 269 | 114 | 1 | 27 | 289 | 20 | 288 | 1.35e-111 | 324 |
| MS.gene49051.t1 | AT1G12710 | 56.667 | 270 | 111 | 3 | 25 | 291 | 25 | 291 | 7.77e-106 | 310 |
| MS.gene49051.t1 | AT1G63090 | 54.478 | 268 | 120 | 2 | 25 | 291 | 23 | 289 | 1.20e-101 | 299 |
| MS.gene49051.t1 | AT3G53000 | 49.315 | 292 | 129 | 3 | 1 | 281 | 1 | 284 | 2.23e-98 | 291 |
| MS.gene49051.t1 | AT1G12710 | 49.038 | 312 | 111 | 4 | 25 | 291 | 25 | 333 | 7.73e-97 | 288 |
| MS.gene49051.t1 | AT1G09155 | 28.079 | 203 | 130 | 3 | 31 | 231 | 3 | 191 | 1.45e-22 | 95.1 |
| MS.gene49051.t1 | AT2G02360 | 38.129 | 139 | 80 | 2 | 32 | 169 | 18 | 151 | 2.92e-22 | 94.0 |
| MS.gene49051.t1 | AT2G02240 | 29.137 | 278 | 147 | 8 | 31 | 282 | 64 | 317 | 2.45e-20 | 89.4 |
| MS.gene49051.t1 | AT2G02230 | 32.911 | 158 | 98 | 3 | 15 | 171 | 21 | 171 | 2.77e-20 | 89.7 |
| MS.gene49051.t1 | AT5G24560 | 27.778 | 162 | 105 | 3 | 30 | 184 | 5 | 161 | 2.94e-19 | 84.0 |
| MS.gene49051.t1 | AT1G80110 | 26.119 | 268 | 173 | 7 | 28 | 282 | 1 | 256 | 1.72e-18 | 83.2 |
| MS.gene49051.t1 | AT2G02340 | 31.579 | 171 | 101 | 4 | 19 | 181 | 27 | 189 | 2.70e-18 | 83.6 |
| MS.gene49051.t1 | AT2G02350 | 31.410 | 156 | 100 | 3 | 13 | 166 | 9 | 159 | 1.08e-17 | 81.6 |
| MS.gene49051.t1 | AT2G02310 | 36.641 | 131 | 77 | 2 | 30 | 159 | 47 | 172 | 1.47e-17 | 81.6 |
| MS.gene49051.t1 | AT2G02250 | 30.286 | 175 | 112 | 4 | 2 | 171 | 18 | 187 | 4.34e-17 | 80.1 |
| MS.gene49051.t1 | AT1G56250 | 24.823 | 282 | 176 | 8 | 31 | 281 | 4 | 280 | 3.05e-16 | 77.4 |
| MS.gene49051.t1 | AT1G56240 | 22.945 | 292 | 169 | 6 | 31 | 281 | 4 | 280 | 3.41e-15 | 74.7 |
| MS.gene49051.t1 | AT2G02300 | 30.464 | 151 | 100 | 2 | 22 | 171 | 28 | 174 | 3.32e-12 | 65.9 |
Find 57 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGCTTATAAATTTCT+TGG | 0.233636 | 1.3:+69861314 | MS.gene49051:CDS |
| TCCACCTGATATATGCAAAT+TGG | 0.341137 | 1.3:+69861214 | MS.gene49051:CDS |
| CATAACTTTCAGACTCCAAT+TGG | 0.346494 | 1.3:+69863782 | MS.gene49051:CDS |
| TTACCATGTTGGAGATTTCA+TGG | 0.347440 | 1.3:+69863956 | MS.gene49051:CDS |
| ATGTGGTGGGTTGAAGTAAT+AGG | 0.354758 | 1.3:+69863723 | MS.gene49051:CDS |
| TCAAAGTCTTTGAAGATAAC+AGG | 0.357934 | 1.3:+69861616 | MS.gene49051:CDS |
| ATTTGCATGGGCCAGGGCAA+TGG | 0.362661 | 1.3:+69863928 | MS.gene49051:CDS |
| TGGATCAAGATGCATGAGTA+TGG | 0.388988 | 1.3:-69861195 | None:intergenic |
| CTAGCCAATTTGCATATATC+AGG | 0.392374 | 1.3:-69861218 | None:intergenic |
| TTTGCATGGGCCAGGGCAAT+GGG | 0.397867 | 1.3:+69863929 | MS.gene49051:CDS |
| GAGTGTTATTTGCATGGGCC+AGG | 0.404946 | 1.3:+69863921 | MS.gene49051:CDS |
| GTACCACCGTCAAAGCGATT+AGG | 0.408204 | 1.3:-69861392 | None:intergenic |
| ATCTATGCAGAGGCCGCCTT+TGG | 0.412675 | 1.3:-69864042 | None:intergenic |
| GAATAGATGATAGAAGATAT+TGG | 0.414837 | 1.3:+69861638 | MS.gene49051:CDS |
| GACATCTTTCTTAGTCATAG+TGG | 0.416582 | 1.3:-69861351 | None:intergenic |
| ATGGAAGAGATGCAACTCTC+TGG | 0.459681 | 1.3:-69861176 | None:intergenic |
| ATCTCAGAGTGTTATTTGCA+TGG | 0.460843 | 1.3:+69863915 | MS.gene49051:CDS |
| AATTCTTCATCATCAAGAAC+GGG | 0.479897 | 1.3:+69861140 | MS.gene49051:CDS |
| AGTCTTTCTCTAAACACAGT+TGG | 0.483039 | 1.3:-69864080 | None:intergenic |
| ACGATGATCAAGTTCATGGC+TGG | 0.486450 | 1.3:+69863841 | MS.gene49051:CDS |
| GGGAAAGTCATCAAAACGAT+TGG | 0.489012 | 1.3:+69863803 | MS.gene49051:CDS |
| CTGATATATGCAAATTGGCT+AGG | 0.492079 | 1.3:+69861219 | MS.gene49051:CDS |
| GTAGAGAGTTGGAATCTAAC+GGG | 0.506240 | 1.3:-69863873 | None:intergenic |
| ACATTCCTACTGAGGAATCC+AGG | 0.510212 | 1.3:+69861665 | MS.gene49051:CDS |
| TGGTAATAAGCCCATTGCCC+TGG | 0.511634 | 1.3:-69863939 | None:intergenic |
| TCTCACCTGGATTCCTCAGT+AGG | 0.517191 | 1.3:-69861670 | None:intergenic |
| TGCAACGATGATCAAGTTCA+TGG | 0.517273 | 1.3:+69863837 | MS.gene49051:CDS |
| ATAACTTTCAGACTCCAATT+GGG | 0.520543 | 1.3:+69863783 | MS.gene49051:CDS |
| GGAAAGTCATCAAAACGATT+GGG | 0.522230 | 1.3:+69863804 | MS.gene49051:CDS |
| TATTCACAGGTTCAAGAATG+TGG | 0.529110 | 1.3:+69863686 | MS.gene49051:intron |
| CAATGGGCTTATTACCATGT+TGG | 0.535550 | 1.3:+69863945 | MS.gene49051:CDS |
| TAATTCTTCATCATCAAGAA+CGG | 0.543265 | 1.3:+69861139 | MS.gene49051:CDS |
| CGATGATCAAGTTCATGGCT+GGG | 0.545852 | 1.3:+69863842 | MS.gene49051:CDS |
| TGTCAACCTAATCGCTTTGA+CGG | 0.551447 | 1.3:+69861386 | MS.gene49051:CDS |
| GCAAGAAACTTGTAGCATGA+TGG | 0.553327 | 1.3:-69861299 | None:intergenic |
| TCTCAGAGTGTTATTTGCAT+GGG | 0.559048 | 1.3:+69863916 | MS.gene49051:CDS |
| GCCAATTTGCATATATCAGG+TGG | 0.562917 | 1.3:-69861215 | None:intergenic |
| GACCGTCCGATGTAGAGAGT+TGG | 0.563295 | 1.3:-69863884 | None:intergenic |
| TGTAGAGAGTTGGAATCTAA+CGG | 0.566747 | 1.3:-69863874 | None:intergenic |
| CATATCTTCAACAAATGTGG+TGG | 0.568286 | 1.3:+69863709 | MS.gene49051:CDS |
| CTAGAGTTTGTATTCCCTGT+GGG | 0.569667 | 1.3:+69863750 | MS.gene49051:CDS |
| TGATATATGCAAATTGGCTA+GGG | 0.577318 | 1.3:+69861220 | MS.gene49051:CDS |
| AGTGTTATTTGCATGGGCCA+GGG | 0.596672 | 1.3:+69863922 | MS.gene49051:CDS |
| GTTATGCTGTAACTTCCCAC+AGG | 0.602467 | 1.3:-69863765 | None:intergenic |
| TTGGATTTACATTCCTACTG+AGG | 0.608657 | 1.3:+69861657 | MS.gene49051:CDS |
| ATTGATTGTACTCATACCAA+AGG | 0.615939 | 1.3:+69864026 | MS.gene49051:CDS |
| TTCCAACTCTCTACATCGGA+CGG | 0.616192 | 1.3:+69863882 | MS.gene49051:CDS |
| CAACCTAATCGCTTTGACGG+TGG | 0.616958 | 1.3:+69861389 | MS.gene49051:CDS |
| CAACCATGAAATCTCCAACA+TGG | 0.639418 | 1.3:-69863959 | None:intergenic |
| AAGAAGCTCTATGAAAAGCA+CGG | 0.646856 | 1.3:-69861247 | None:intergenic |
| GCTAGAGTTTGTATTCCCTG+TGG | 0.659976 | 1.3:+69863749 | MS.gene49051:CDS |
| GATTGTACTCATACCAAAGG+CGG | 0.661351 | 1.3:+69864029 | MS.gene49051:CDS |
| TGGCATATCTTCAACAAATG+TGG | 0.668014 | 1.3:+69863706 | MS.gene49051:CDS |
| TGATTGCACTATCTATGCAG+AGG | 0.671933 | 1.3:-69864052 | None:intergenic |
| TAGATTCCAACTCTCTACAT+CGG | 0.677625 | 1.3:+69863878 | MS.gene49051:CDS |
| ATATCTTCAACAAATGTGGT+GGG | 0.687256 | 1.3:+69863710 | MS.gene49051:CDS |
| TTATGCTGTAACTTCCCACA+GGG | 0.694696 | 1.3:-69863764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAATATCTATTAAAA+TGG | + | chr1.3:69863116-69863135 | MS.gene49051:intron | 10.0% |
| !! | TACAAATCAATTAAAATCAA+TGG | + | chr1.3:69862673-69862692 | MS.gene49051:intron | 15.0% |
| !! | TATGAAAATGTGTTTATAAA+CGG | + | chr1.3:69862276-69862295 | MS.gene49051:intron | 15.0% |
| !! | TCTTATCAAAAATAAACATT+AGG | + | chr1.3:69863519-69863538 | MS.gene49051:intron | 15.0% |
| !! | TGAAGAAAAAAAAAATCAAA+AGG | - | chr1.3:69861504-69861523 | None:intergenic | 15.0% |
| !! | TTAAATTTCTACACTAAATT+TGG | - | chr1.3:69862330-69862349 | None:intergenic | 15.0% |
| !! | TTGGTCAAATAATAAATATT+AGG | + | chr1.3:69862561-69862580 | MS.gene49051:intron | 15.0% |
| !!! | AAAGAAAACTTGATTTTTAT+GGG | - | chr1.3:69863999-69864018 | None:intergenic | 15.0% |
| !!! | ATACTTTTTAAGAATGAATT+AGG | + | chr1.3:69861992-69862011 | MS.gene49051:intron | 15.0% |
| !!! | TAAATGATATTTTAATCCAT+GGG | - | chr1.3:69862727-69862746 | None:intergenic | 15.0% |
| !!! | TATAGAATAAAGTTTTCATT+AGG | - | chr1.3:69862454-69862473 | None:intergenic | 15.0% |
| !!! | TTGATTTTAATTGATTTGTA+CGG | - | chr1.3:69862673-69862692 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTTGTATTCAC+AGG | + | chr1.3:69863673-69863692 | MS.gene49051:intron | 15.0% |
| !! | AACTAATTGAAAATGCAAAA+TGG | + | chr1.3:69863628-69863647 | MS.gene49051:intron | 20.0% |
| !! | AAGAAAAGCAGTAATATTAA+CGG | - | chr1.3:69863364-69863383 | None:intergenic | 20.0% |
| !! | AGATGAAAGTTTAATATGTT+AGG | + | chr1.3:69862530-69862549 | MS.gene49051:intron | 20.0% |
| !! | ATTAACCCTAAAAATTTAGA+AGG | + | chr1.3:69862812-69862831 | MS.gene49051:intron | 20.0% |
| !! | TATCCTGTAAAAAAAAATAG+TGG | + | chr1.3:69863460-69863479 | MS.gene49051:intron | 20.0% |
| !! | TTATACATGTTTAATCTTGA+GGG | + | chr1.3:69862215-69862234 | MS.gene49051:intron | 20.0% |
| !! | TTTCTTGCTTATAAATTTCT+TGG | + | chr1.3:69861314-69861333 | MS.gene49051:CDS | 20.0% |
| !!! | AAATGATATTTTAATCCATG+GGG | - | chr1.3:69862726-69862745 | None:intergenic | 20.0% |
| !!! | ATCTTTTCAAAGTCTTATAT+AGG | + | chr1.3:69862787-69862806 | MS.gene49051:intron | 20.0% |
| !!! | CAAAGAAAACTTGATTTTTA+TGG | - | chr1.3:69864000-69864019 | None:intergenic | 20.0% |
| !!! | CATAAAAATCAAGTTTTCTT+TGG | + | chr1.3:69863998-69864017 | MS.gene49051:CDS | 20.0% |
| !!! | CCATTATTTTGAAAATATGT+AGG | - | chr1.3:69862627-69862646 | None:intergenic | 20.0% |
| !!! | CCTACATATTTTCAAAATAA+TGG | + | chr1.3:69862624-69862643 | MS.gene49051:intron | 20.0% |
| !!! | CTAAATGATATTTTAATCCA+TGG | - | chr1.3:69862728-69862747 | None:intergenic | 20.0% |
| !!! | GTTTCTTAATATTTTTCATG+TGG | + | chr1.3:69862365-69862384 | MS.gene49051:intron | 20.0% |
| !!! | TAGCATTTTATGGATAATTT+AGG | + | chr1.3:69863007-69863026 | MS.gene49051:intron | 20.0% |
| !!! | TTTAAGAAAAAGCAGTTTTT+GGG | + | chr1.3:69862486-69862505 | MS.gene49051:intron | 20.0% |
| !!! | TTTGCATTTTCAATTAGTTT+TGG | - | chr1.3:69863627-69863646 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAAAAGCAGTTTT+TGG | + | chr1.3:69862485-69862504 | MS.gene49051:intron | 20.0% |
| ! | AAAATTTAGTCACCCTATAT+TGG | + | chr1.3:69862158-69862177 | MS.gene49051:intron | 25.0% |
| ! | AAATCAAGGATGCTAAAATA+AGG | - | chr1.3:69861441-69861460 | None:intergenic | 25.0% |
| ! | AAATTTAGTCACCCTATATT+GGG | + | chr1.3:69862159-69862178 | MS.gene49051:intron | 25.0% |
| ! | AATGGTTATATAAGTGAAAG+TGG | + | chr1.3:69862642-69862661 | MS.gene49051:intron | 25.0% |
| ! | ATCGCATATTATAATGAGAA+GGG | - | chr1.3:69863335-69863354 | None:intergenic | 25.0% |
| ! | CAAGATTAAACATGTATAAG+AGG | - | chr1.3:69862214-69862233 | None:intergenic | 25.0% |
| ! | CTTATACATGTTTAATCTTG+AGG | + | chr1.3:69862214-69862233 | MS.gene49051:intron | 25.0% |
| ! | GAATAGATGATAGAAGATAT+TGG | + | chr1.3:69861638-69861657 | MS.gene49051:CDS | 25.0% |
| ! | TAAGATAGAGTAACTTACTT+TGG | - | chr1.3:69861417-69861436 | None:intergenic | 25.0% |
| ! | TAATTCTTCATCATCAAGAA+CGG | + | chr1.3:69861139-69861158 | MS.gene49051:CDS | 25.0% |
| ! | TTAAAAGCCTATTTGCAAAT+TGG | + | chr1.3:69862964-69862983 | MS.gene49051:intron | 25.0% |
| ! | TTAGTATTAAGAAGTTTCTG+CGG | + | chr1.3:69863555-69863574 | MS.gene49051:intron | 25.0% |
| ! | TTGATGTGTGAATAATTTGA+TGG | - | chr1.3:69862065-69862084 | None:intergenic | 25.0% |
| !! | ACAGTTCCTTCTAAATTTTT+AGG | - | chr1.3:69862821-69862840 | None:intergenic | 25.0% |
| !! | ATGAAAATGACCTTTGTTTA+AGG | + | chr1.3:69863083-69863102 | MS.gene49051:intron | 25.0% |
| !! | ATTTTATGTAAACACAAAGC+AGG | - | chr1.3:69861887-69861906 | None:intergenic | 25.0% |
| !! | CAGTTCCTTCTAAATTTTTA+GGG | - | chr1.3:69862820-69862839 | None:intergenic | 25.0% |
| !! | TATGGTCAAATAGCATTTTA+TGG | + | chr1.3:69862997-69863016 | MS.gene49051:intron | 25.0% |
| !! | TGAAAATGACCTTTGTTTAA+GGG | + | chr1.3:69863084-69863103 | MS.gene49051:intron | 25.0% |
| !! | TGAATTATACGCATTTTACT+TGG | + | chr1.3:69863298-69863317 | MS.gene49051:intron | 25.0% |
| !! | TTTGACTAACTTTTTAATGC+AGG | - | chr1.3:69861934-69861953 | None:intergenic | 25.0% |
| !!! | AATATGTTAGGCTCTTTTTT+TGG | + | chr1.3:69862542-69862561 | MS.gene49051:intron | 25.0% |
| !!! | CAAATTGGCTTATGTTTTTA+TGG | + | chr1.3:69862979-69862998 | MS.gene49051:intron | 25.0% |
| !!! | CATTTAGTTTCTTTTCATTG+AGG | + | chr1.3:69862741-69862760 | MS.gene49051:intron | 25.0% |
| !!! | GTTAATATTACTGCTTTTCT+TGG | + | chr1.3:69863363-69863382 | MS.gene49051:intron | 25.0% |
| !!! | TCTTGATTTGTTTTTCTTTC+TGG | + | chr1.3:69861540-69861559 | MS.gene49051:intron | 25.0% |
| !!! | TGACCACTATTTTTTTTTAC+AGG | - | chr1.3:69863466-69863485 | None:intergenic | 25.0% |
| !!! | TTATTTTGACCCTATATTGA+AGG | + | chr1.3:69861789-69861808 | MS.gene49051:intron | 25.0% |
| !!! | TTTGTTTTTCTTTCTGGTAT+AGG | + | chr1.3:69861546-69861565 | MS.gene49051:intron | 25.0% |
| AATTCTTCATCATCAAGAAC+GGG | + | chr1.3:69861140-69861159 | MS.gene49051:CDS | 30.0% | |
| ACATAAGCCAATTTGCAAAT+AGG | - | chr1.3:69862974-69862993 | None:intergenic | 30.0% | |
| AGAAACAAAGCCTTCAATAT+AGG | - | chr1.3:69861802-69861821 | None:intergenic | 30.0% | |
| ATAACTTTCAGACTCCAATT+GGG | + | chr1.3:69863783-69863802 | MS.gene49051:CDS | 30.0% | |
| ATAGTTGTTGACCCAATATA+GGG | - | chr1.3:69862173-69862192 | None:intergenic | 30.0% | |
| ATATCTTCAACAAATGTGGT+GGG | + | chr1.3:69863710-69863729 | MS.gene49051:CDS | 30.0% | |
| ATGTGTGAATAATTTGATGG+TGG | - | chr1.3:69862062-69862081 | None:intergenic | 30.0% | |
| ATTGATTGTACTCATACCAA+AGG | + | chr1.3:69864026-69864045 | MS.gene49051:CDS | 30.0% | |
| CAAAGACACTTCACATAATT+GGG | - | chr1.3:69863229-69863248 | None:intergenic | 30.0% | |
| CATATTCCACGAATAGAATA+TGG | - | chr1.3:69863161-69863180 | None:intergenic | 30.0% | |
| CATTACTTTCCCTTAAACAA+AGG | - | chr1.3:69863096-69863115 | None:intergenic | 30.0% | |
| GAAACAAAGCCTTCAATATA+GGG | - | chr1.3:69861801-69861820 | None:intergenic | 30.0% | |
| GACACACATTGAAAATGTTT+AGG | - | chr1.3:69861853-69861872 | None:intergenic | 30.0% | |
| GATCGCATATTATAATGAGA+AGG | - | chr1.3:69863336-69863355 | None:intergenic | 30.0% | |
| TCGCATATTATAATGAGAAG+GGG | - | chr1.3:69863334-69863353 | None:intergenic | 30.0% | |
| TCTATAGTAAATTTCTCACC+TGG | - | chr1.3:69861686-69861705 | None:intergenic | 30.0% | |
| TGAAGCTAAGTGAAAAATCA+AGG | - | chr1.3:69861455-69861474 | None:intergenic | 30.0% | |
| TGATATATGCAAATTGGCTA+GGG | + | chr1.3:69861220-69861239 | MS.gene49051:CDS | 30.0% | |
| TGTTTGTCTACAAACCAATT+GGG | - | chr1.3:69863396-69863415 | None:intergenic | 30.0% | |
| TTCTTGGAATATATCCCAAT+TGG | + | chr1.3:69863379-69863398 | MS.gene49051:intron | 30.0% | |
| ! | ACATTTTCCTGAAATTACGA+TGG | + | chr1.3:69862895-69862914 | MS.gene49051:intron | 30.0% |
| ! | CAAATAGTTTGTGTAAGAGA+AGG | + | chr1.3:69862087-69862106 | MS.gene49051:intron | 30.0% |
| ! | TCAAAGTCTTTGAAGATAAC+AGG | + | chr1.3:69861616-69861635 | MS.gene49051:CDS | 30.0% |
| ! | TTAGAAGGAACTGTTGTTTA+AGG | + | chr1.3:69862827-69862846 | MS.gene49051:intron | 30.0% |
| ! | TTGATTTTTATGGGCTCATT+GGG | - | chr1.3:69863990-69864009 | None:intergenic | 30.0% |
| !! | TATATTGAAGGCTTTGTTTC+TGG | + | chr1.3:69861801-69861820 | MS.gene49051:intron | 30.0% |
| !! | TCTGGTATAGGAAGTTTTAT+TGG | + | chr1.3:69861558-69861577 | MS.gene49051:intron | 30.0% |
| AAAGCTTCCATCGTAATTTC+AGG | - | chr1.3:69862905-69862924 | None:intergenic | 35.0% | |
| AAGAAGCTCTATGAAAAGCA+CGG | - | chr1.3:69861250-69861269 | None:intergenic | 35.0% | |
| AGCAGTAATATTAACGGTTG+AGG | - | chr1.3:69863358-69863377 | None:intergenic | 35.0% | |
| AGTCTTTCTCTAAACACAGT+TGG | - | chr1.3:69864083-69864102 | None:intergenic | 35.0% | |
| CATAACTTTCAGACTCCAAT+TGG | + | chr1.3:69863782-69863801 | MS.gene49051:CDS | 35.0% | |
| CATATCTTCAACAAATGTGG+TGG | + | chr1.3:69863709-69863728 | MS.gene49051:CDS | 35.0% | |
| CCAAAGACACTTCACATAAT+TGG | - | chr1.3:69863230-69863249 | None:intergenic | 35.0% | |
| CGCATATTATAATGAGAAGG+GGG | - | chr1.3:69863333-69863352 | None:intergenic | 35.0% | |
| CTAGCCAATTTGCATATATC+AGG | - | chr1.3:69861221-69861240 | None:intergenic | 35.0% | |
| CTATGGCAGTTTCTTTATGA+GGG | + | chr1.3:69862931-69862950 | MS.gene49051:intron | 35.0% | |
| CTCATAAAGAAACTGCCATA+GGG | - | chr1.3:69862932-69862951 | None:intergenic | 35.0% | |
| CTGATATATGCAAATTGGCT+AGG | + | chr1.3:69861219-69861238 | MS.gene49051:CDS | 35.0% | |
| CTGTTTGTCTACAAACCAAT+TGG | - | chr1.3:69863397-69863416 | None:intergenic | 35.0% | |
| GACATCTTTCTTAGTCATAG+TGG | - | chr1.3:69861354-69861373 | None:intergenic | 35.0% | |
| GATAGTTGTTGACCCAATAT+AGG | - | chr1.3:69862174-69862193 | None:intergenic | 35.0% | |
| GCATATTATAATGAGAAGGG+GGG | - | chr1.3:69863332-69863351 | None:intergenic | 35.0% | |
| GGAAAGTCATCAAAACGATT+GGG | + | chr1.3:69863804-69863823 | MS.gene49051:CDS | 35.0% | |
| GGGTTGTTCAGATTATTCTT+TGG | - | chr1.3:69862706-69862725 | None:intergenic | 35.0% | |
| GTGTTTATAAACGGTGTATG+CGG | + | chr1.3:69862285-69862304 | MS.gene49051:intron | 35.0% | |
| TAGATTCCAACTCTCTACAT+CGG | + | chr1.3:69863878-69863897 | MS.gene49051:CDS | 35.0% | |
| TATGGCAGTTTCTTTATGAG+GGG | + | chr1.3:69862932-69862951 | MS.gene49051:intron | 35.0% | |
| TATTCACAGGTTCAAGAATG+TGG | + | chr1.3:69863686-69863705 | MS.gene49051:intron | 35.0% | |
| TCCACCTGATATATGCAAAT+TGG | + | chr1.3:69861214-69861233 | MS.gene49051:CDS | 35.0% | |
| TCTCACATTGAAAAGAGACA+AGG | + | chr1.3:69862130-69862149 | MS.gene49051:intron | 35.0% | |
| TGGCATATCTTCAACAAATG+TGG | + | chr1.3:69863706-69863725 | MS.gene49051:CDS | 35.0% | |
| TGTAGAGAGTTGGAATCTAA+CGG | - | chr1.3:69863877-69863896 | None:intergenic | 35.0% | |
| TTACCATGTTGGAGATTTCA+TGG | + | chr1.3:69863956-69863975 | MS.gene49051:CDS | 35.0% | |
| TTGGATTTACATTCCTACTG+AGG | + | chr1.3:69861657-69861676 | MS.gene49051:CDS | 35.0% | |
| ! | CCAATTATGTGAAGTGTCTT+TGG | + | chr1.3:69863227-69863246 | MS.gene49051:intron | 35.0% |
| ! | CTTGATTTTTATGGGCTCAT+TGG | - | chr1.3:69863991-69864010 | None:intergenic | 35.0% |
| ! | TAGTTTGTGTAAGAGAAGGT+TGG | + | chr1.3:69862091-69862110 | MS.gene49051:intron | 35.0% |
| !! | ATCTCAGAGTGTTATTTGCA+TGG | + | chr1.3:69863915-69863934 | MS.gene49051:CDS | 35.0% |
| !! | GTTTTATTGGACAAATGCAG+TGG | + | chr1.3:69861571-69861590 | MS.gene49051:CDS | 35.0% |
| !! | GTTTTGATGACTTTCCCAAT+TGG | - | chr1.3:69863800-69863819 | None:intergenic | 35.0% |
| !! | TCTCAGAGTGTTATTTGCAT+GGG | + | chr1.3:69863916-69863935 | MS.gene49051:CDS | 35.0% |
| !! | TTTGATGGTGGCTAAATTGA+TGG | - | chr1.3:69862050-69862069 | None:intergenic | 35.0% |
| !!! | TTCTTCTGCTGATTTTGTGT+GGG | + | chr1.3:69861265-69861284 | MS.gene49051:CDS | 35.0% |
| ATGGCAGTTTCTTTATGAGG+GGG | + | chr1.3:69862933-69862952 | MS.gene49051:intron | 40.0% | |
| CAACCATGAAATCTCCAACA+TGG | - | chr1.3:69863962-69863981 | None:intergenic | 40.0% | |
| CCTATGGCAGTTTCTTTATG+AGG | + | chr1.3:69862930-69862949 | MS.gene49051:intron | 40.0% | |
| CCTCATAAAGAAACTGCCAT+AGG | - | chr1.3:69862933-69862952 | None:intergenic | 40.0% | |
| CTAGAGTTTGTATTCCCTGT+GGG | + | chr1.3:69863750-69863769 | MS.gene49051:CDS | 40.0% | |
| GAATAATCTGAACAACCCCA+TGG | + | chr1.3:69862708-69862727 | MS.gene49051:intron | 40.0% | |
| GATTGTACTCATACCAAAGG+CGG | + | chr1.3:69864029-69864048 | MS.gene49051:CDS | 40.0% | |
| GCAAGAAACTTGTAGCATGA+TGG | - | chr1.3:69861302-69861321 | None:intergenic | 40.0% | |
| GCAATGCCATATTCTATTCG+TGG | + | chr1.3:69863152-69863171 | MS.gene49051:intron | 40.0% | |
| GCCAATTTGCATATATCAGG+TGG | - | chr1.3:69861218-69861237 | None:intergenic | 40.0% | |
| GGGAAAGTCATCAAAACGAT+TGG | + | chr1.3:69863803-69863822 | MS.gene49051:CDS | 40.0% | |
| GTAGAGAGTTGGAATCTAAC+GGG | - | chr1.3:69863876-69863895 | None:intergenic | 40.0% | |
| TGATTGCACTATCTATGCAG+AGG | - | chr1.3:69864055-69864074 | None:intergenic | 40.0% | |
| TGCAACGATGATCAAGTTCA+TGG | + | chr1.3:69863837-69863856 | MS.gene49051:CDS | 40.0% | |
| TGGATCAAGATGCATGAGTA+TGG | - | chr1.3:69861198-69861217 | None:intergenic | 40.0% | |
| TGTCAACCTAATCGCTTTGA+CGG | + | chr1.3:69861386-69861405 | MS.gene49051:CDS | 40.0% | |
| TGTTTAGGAGTCAAGACACA+TGG | - | chr1.3:69861838-69861857 | None:intergenic | 40.0% | |
| TTATGCTGTAACTTCCCACA+GGG | - | chr1.3:69863767-69863786 | None:intergenic | 40.0% | |
| TTTATAAACGGTGTATGCGG+TGG | + | chr1.3:69862288-69862307 | MS.gene49051:intron | 40.0% | |
| ! | CAATGGGCTTATTACCATGT+TGG | + | chr1.3:69863945-69863964 | MS.gene49051:CDS | 40.0% |
| ! | TATTTTTCATGTGGCAGCTG+AGG | + | chr1.3:69862374-69862393 | MS.gene49051:intron | 40.0% |
| ! | TGGGCAAATAGAAGCTTTTG+TGG | - | chr1.3:69863210-69863229 | None:intergenic | 40.0% |
| !! | ATGTGGTGGGTTGAAGTAAT+AGG | + | chr1.3:69863723-69863742 | MS.gene49051:CDS | 40.0% |
| !!! | CTTCTTCTGCTGATTTTGTG+TGG | + | chr1.3:69861264-69861283 | MS.gene49051:CDS | 40.0% |
| ACATTCCTACTGAGGAATCC+AGG | + | chr1.3:69861665-69861684 | MS.gene49051:CDS | 45.0% | |
| ACGATGATCAAGTTCATGGC+TGG | + | chr1.3:69863841-69863860 | MS.gene49051:CDS | 45.0% | |
| ATGGAAGAGATGCAACTCTC+TGG | - | chr1.3:69861179-69861198 | None:intergenic | 45.0% | |
| ATGGAAGCTTTCTCACCCTA+TGG | + | chr1.3:69862914-69862933 | MS.gene49051:intron | 45.0% | |
| ATGTGGCAGCTGAGGTAAAA+GGG | + | chr1.3:69862382-69862401 | MS.gene49051:intron | 45.0% | |
| CGATGATCAAGTTCATGGCT+GGG | + | chr1.3:69863842-69863861 | MS.gene49051:CDS | 45.0% | |
| GCTAGAGTTTGTATTCCCTG+TGG | + | chr1.3:69863749-69863768 | MS.gene49051:CDS | 45.0% | |
| GTGTATGCGGTGGACAATAA+GGG | + | chr1.3:69862298-69862317 | MS.gene49051:intron | 45.0% | |
| GTTATGCTGTAACTTCCCAC+AGG | - | chr1.3:69863768-69863787 | None:intergenic | 45.0% | |
| TTCCAACTCTCTACATCGGA+CGG | + | chr1.3:69863882-69863901 | MS.gene49051:CDS | 45.0% | |
| !! | AGTGTTATTTGCATGGGCCA+GGG | + | chr1.3:69863922-69863941 | MS.gene49051:CDS | 45.0% |
| !! | TATATTATATTAATAAACTT+AGG | + | chr1.3:69863260-69863279 | MS.gene49051:intron | 5.0% |
| !!! | TTTTTATTAACTTATAAATA+TGG | + | chr1.3:69861734-69861753 | MS.gene49051:intron | 5.0% |
| CAACCTAATCGCTTTGACGG+TGG | + | chr1.3:69861389-69861408 | MS.gene49051:CDS | 50.0% | |
| CATGTGGCAGCTGAGGTAAA+AGG | + | chr1.3:69862381-69862400 | MS.gene49051:intron | 50.0% | |
| GGTGTATGCGGTGGACAATA+AGG | + | chr1.3:69862297-69862316 | MS.gene49051:intron | 50.0% | |
| GTACCACCGTCAAAGCGATT+AGG | - | chr1.3:69861395-69861414 | None:intergenic | 50.0% | |
| TCTCACCTGGATTCCTCAGT+AGG | - | chr1.3:69861673-69861692 | None:intergenic | 50.0% | |
| TGGTAATAAGCCCATTGCCC+TGG | - | chr1.3:69863942-69863961 | None:intergenic | 50.0% | |
| TGTGGCAGCTGAGGTAAAAG+GGG | + | chr1.3:69862383-69862402 | MS.gene49051:intron | 50.0% | |
| !! | GAGTGTTATTTGCATGGGCC+AGG | + | chr1.3:69863921-69863940 | MS.gene49051:CDS | 50.0% |
| ATCTATGCAGAGGCCGCCTT+TGG | - | chr1.3:69864045-69864064 | None:intergenic | 55.0% | |
| ATTTGCATGGGCCAGGGCAA+TGG | + | chr1.3:69863928-69863947 | MS.gene49051:CDS | 55.0% | |
| GACCGTCCGATGTAGAGAGT+TGG | - | chr1.3:69863887-69863906 | None:intergenic | 55.0% | |
| TTTGCATGGGCCAGGGCAAT+GGG | + | chr1.3:69863929-69863948 | MS.gene49051:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 69861083 | 69864115 | 69861083 | ID=MS.gene49051 |
| chr1.3 | mRNA | 69861083 | 69864115 | 69861083 | ID=MS.gene49051.t1;Parent=MS.gene49051 |
| chr1.3 | exon | 69861083 | 69861418 | 69861083 | ID=MS.gene49051.t1.exon1;Parent=MS.gene49051.t1 |
| chr1.3 | CDS | 69861083 | 69861418 | 69861083 | ID=cds.MS.gene49051.t1;Parent=MS.gene49051.t1 |
| chr1.3 | exon | 69861568 | 69861686 | 69861568 | ID=MS.gene49051.t1.exon2;Parent=MS.gene49051.t1 |
| chr1.3 | CDS | 69861568 | 69861686 | 69861568 | ID=cds.MS.gene49051.t1;Parent=MS.gene49051.t1 |
| chr1.3 | exon | 69863695 | 69864115 | 69863695 | ID=MS.gene49051.t1.exon3;Parent=MS.gene49051.t1 |
| chr1.3 | CDS | 69863695 | 69864115 | 69863695 | ID=cds.MS.gene49051.t1;Parent=MS.gene49051.t1 |
| Gene Sequence |
| Protein sequence |
