AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49295

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49295.t1 MTR_1g069960 95.973 149 2 2 1 145 1 149 6.44e-101 286
MS.gene49295.t1 MTR_7g096810 64.341 129 27 4 14 140 3 114 2.39e-42 137
MS.gene49295.t1 MTR_1g074310 49.635 137 65 2 4 140 3 135 8.81e-36 120
MS.gene49295.t1 MTR_1g070070 68.831 77 23 1 10 85 5 81 6.98e-33 113
MS.gene49295.t1 MTR_2g438180 50.388 129 54 3 12 140 4 122 1.28e-32 112
MS.gene49295.t1 MTR_1g074230 77.778 63 14 0 23 85 17 79 1.83e-31 109
MS.gene49295.t1 MTR_1g048610 63.750 80 29 0 15 94 79 158 2.38e-31 112
MS.gene49295.t1 MTR_7g096750 75.000 64 16 0 22 85 17 80 8.66e-30 105
MS.gene49295.t1 MTR_1g090290 75.000 60 15 0 25 84 113 172 1.14e-29 107
MS.gene49295.t1 MTR_7g096700 69.565 69 21 0 22 90 17 85 1.18e-29 105
MS.gene49295.t1 MTR_2g078680 50.893 112 37 4 8 102 8 118 6.63e-29 105
MS.gene49295.t1 MTR_4g088005 63.158 76 25 1 15 87 44 119 7.18e-29 102
MS.gene49295.t1 MTR_1g074250 64.474 76 21 2 11 85 10 80 1.76e-28 102
MS.gene49295.t1 MTR_4g100420 66.176 68 23 0 25 92 157 224 1.77e-28 106
MS.gene49295.t1 MTR_2g015050 71.429 63 18 0 25 87 134 196 2.32e-28 105
MS.gene49295.t1 MTR_2g015040 68.182 66 21 0 25 90 63 128 3.21e-28 102
MS.gene49295.t1 MTR_4g054360 75.862 58 14 0 25 82 124 181 8.07e-28 103
MS.gene49295.t1 MTR_4g054740 69.231 65 20 0 20 84 92 156 1.45e-27 102
MS.gene49295.t1 MTR_4g100450 71.667 60 17 0 25 84 154 213 1.58e-27 103
MS.gene49295.t1 MTR_2g105380 58.889 90 31 3 6 92 95 181 6.36e-27 103
MS.gene49295.t1 MTR_8g006840 67.188 64 21 0 20 83 120 183 1.24e-26 99.4
MS.gene49295.t1 MTR_4g100380 72.414 58 16 0 25 82 145 202 1.99e-26 100
MS.gene49295.t1 MTR_4g054860 71.186 59 17 0 26 84 132 190 2.56e-26 100
MS.gene49295.t1 MTR_4g078710 64.706 68 23 1 15 82 18 84 4.11e-26 98.2
MS.gene49295.t1 MTR_4g086165 74.576 59 14 1 24 82 81 138 4.99e-26 97.8
MS.gene49295.t1 MTR_7g020980 65.217 69 23 1 25 93 51 118 9.80e-26 96.3
MS.gene49295.t1 MTR_1g069985 68.852 61 19 0 21 81 71 131 9.87e-26 97.4
MS.gene49295.t1 MTR_4g086220 75.862 58 13 1 25 82 96 152 1.10e-25 97.8
MS.gene49295.t1 MTR_8g006815 66.667 60 20 0 24 83 95 154 1.35e-25 96.7
MS.gene49295.t1 MTR_7g081815 66.667 60 20 0 24 83 60 119 1.49e-25 96.7
MS.gene49295.t1 MTR_1g070020 57.500 80 28 1 2 81 53 126 1.50e-25 97.1
MS.gene49295.t1 MTR_7g081795 66.667 60 20 0 24 83 59 118 1.80e-25 96.3
MS.gene49295.t1 MTR_8g022820 69.565 69 18 2 24 92 123 188 1.88e-25 99.8
MS.gene49295.t1 MTR_8g022820 69.565 69 18 2 24 92 123 188 1.88e-25 99.8
MS.gene49295.t1 MTR_8g022820 69.565 69 18 2 24 92 122 187 1.94e-25 99.8
MS.gene49295.t1 MTR_7g021010 72.414 58 15 1 25 82 51 107 2.27e-25 95.5
MS.gene49295.t1 MTR_8g006825 51.087 92 30 2 7 83 63 154 2.31e-25 96.3
MS.gene49295.t1 MTR_4g086160 74.138 58 14 1 25 82 96 152 2.38e-25 96.7
MS.gene49295.t1 MTR_1g070015 70.175 57 17 0 25 81 84 140 2.43e-25 96.7
MS.gene49295.t1 MTR_7g081805 66.667 60 20 0 24 83 60 119 2.89e-25 95.9
MS.gene49295.t1 MTR_4g086190 74.138 58 14 1 25 82 96 152 3.85e-25 96.3
MS.gene49295.t1 MTR_7g021010 71.186 59 16 1 25 83 12 69 4.44e-25 93.6
MS.gene49295.t1 MTR_8g092460 58.025 81 31 2 4 82 122 201 5.79e-25 97.4
MS.gene49295.t1 MTR_1g070000 61.194 67 26 0 15 81 74 140 5.90e-25 95.5
MS.gene49295.t1 MTR_1g070045 71.930 57 16 0 25 81 66 122 6.71e-25 94.0
MS.gene49295.t1 MTR_1g087920 73.333 60 15 1 25 84 77 135 6.73e-25 97.1
MS.gene49295.t1 MTR_5g085070 68.852 61 18 1 22 82 48 107 7.00e-25 96.7
MS.gene49295.t1 MTR_1g070035 65.625 64 22 0 21 84 73 136 1.40e-24 94.4
MS.gene49295.t1 MTR_5g085100 67.213 61 19 1 22 82 43 102 1.98e-24 95.5
MS.gene49295.t1 MTR_2g435590 57.895 76 31 1 8 83 79 153 4.26e-24 94.0
MS.gene49295.t1 MTR_1g040430 74.074 54 14 0 31 84 117 170 5.75e-24 92.4
MS.gene49295.t1 MTR_3g053690 71.186 59 16 1 24 82 26 83 6.50e-24 92.8
MS.gene49295.t1 MTR_2g014340 62.857 70 24 2 13 82 8 75 6.68e-24 92.0
MS.gene49295.t1 MTR_1g069940 74.138 58 15 0 25 82 95 152 1.82e-22 89.4
MS.gene49295.t1 MTR_1g028560 70.690 58 16 1 24 81 114 170 1.96e-22 91.3
MS.gene49295.t1 MTR_8g006410 53.086 81 31 2 19 99 46 119 2.43e-22 88.2
MS.gene49295.t1 MTR_1g074370 76.667 60 14 0 25 84 73 132 2.47e-22 88.6
MS.gene49295.t1 MTR_7g096830 73.333 60 16 0 25 84 98 157 3.58e-22 88.6
MS.gene49295.t1 MTR_2g101340 48.352 91 39 3 12 102 29 111 3.80e-22 87.8
MS.gene49295.t1 MTR_5g009620 53.933 89 35 3 24 112 111 193 4.05e-22 89.7
MS.gene49295.t1 MTR_7g046260 56.410 78 27 2 25 102 61 131 4.25e-22 88.2
MS.gene49295.t1 MTR_1g043350 61.039 77 30 0 8 84 65 141 4.97e-22 87.8
MS.gene49295.t1 MTR_7g096780 77.193 57 13 0 25 81 85 141 6.16e-22 87.8
MS.gene49295.t1 MTR_2g014300 67.241 58 18 1 25 82 15 71 9.26e-22 85.9
MS.gene49295.t1 MTR_1g069945 74.138 58 15 0 25 82 101 158 1.01e-21 87.4
MS.gene49295.t1 MTR_6g088405 55.128 78 28 2 25 102 44 114 2.77e-21 85.9
MS.gene49295.t1 MTR_8g069360 67.797 59 18 1 23 81 42 99 4.27e-21 88.2
MS.gene49295.t1 MTR_7g117690 48.684 76 32 2 25 100 28 96 9.99e-21 83.2
MS.gene49295.t1 MTR_5g085125 56.338 71 30 1 20 90 11 80 1.84e-20 82.4
MS.gene49295.t1 MTR_4g035430 52.000 75 29 2 25 99 32 99 2.06e-20 83.6
MS.gene49295.t1 MTR_1g014820 34.591 159 75 5 11 142 14 170 2.84e-20 84.0
MS.gene49295.t1 MTR_3g090760 63.793 58 20 1 24 81 112 168 3.01e-20 85.1
MS.gene49295.t1 MTR_3g074130 66.102 59 19 1 25 83 150 207 3.84e-20 84.7
MS.gene49295.t1 MTR_4g008860 54.430 79 35 1 22 100 5 82 3.97e-20 82.4
MS.gene49295.t1 MTR_5g016750 45.055 91 49 1 1 91 1 90 4.42e-20 82.0
MS.gene49295.t1 MTR_5g032820 66.102 59 19 1 23 81 44 101 5.07e-20 84.7
MS.gene49295.t1 MTR_5g062700 66.102 59 19 1 25 83 173 230 7.64e-20 84.3
MS.gene49295.t1 MTR_2g043050 56.923 65 27 1 20 84 14 77 7.72e-20 82.0
MS.gene49295.t1 MTR_8g027465 42.708 96 44 2 10 105 24 108 9.92e-20 80.9
MS.gene49295.t1 MTR_8g102800 63.793 58 20 1 25 82 37 93 1.38e-19 81.6
MS.gene49295.t1 MTR_8g013860 53.846 78 29 2 25 102 47 117 1.45e-19 80.9
MS.gene49295.t1 MTR_1g090170 62.712 59 21 1 25 83 152 209 1.72e-19 82.8
MS.gene49295.t1 MTR_7g084370 61.765 68 25 1 24 91 41 107 1.81e-19 82.4
MS.gene49295.t1 MTR_1g090170 62.712 59 21 1 25 83 239 296 1.99e-19 83.2
MS.gene49295.t1 MTR_2g043030 47.436 78 40 1 7 84 1 77 2.14e-19 80.5
MS.gene49295.t1 MTR_5g012910 46.875 96 43 3 7 102 11 98 2.19e-19 80.1
MS.gene49295.t1 MTR_3g110205 51.282 78 31 2 25 102 43 113 2.41e-19 80.1
MS.gene49295.t1 MTR_8g099215 63.793 58 20 1 24 81 106 162 5.03e-19 81.6
MS.gene49295.t1 MTR_4g119270 62.069 58 21 1 24 81 52 108 5.29e-19 81.6
MS.gene49295.t1 MTR_8g090350 62.712 59 21 1 25 83 113 170 5.76e-19 80.9
MS.gene49295.t1 MTR_2g090235 63.934 61 21 1 25 85 218 277 6.06e-19 82.0
MS.gene49295.t1 MTR_7g092190 50.000 80 39 1 12 91 17 95 7.18e-19 80.9
MS.gene49295.t1 MTR_2g089170 59.677 62 24 1 22 83 62 122 7.68e-19 79.0
MS.gene49295.t1 MTR_1g074280 51.250 80 39 0 14 93 6 85 7.93e-19 77.0
MS.gene49295.t1 MTR_5g082950 57.353 68 28 1 14 81 55 121 9.15e-19 80.9
MS.gene49295.t1 MTR_1g014780 52.778 72 32 2 12 83 26 95 9.39e-19 79.3
MS.gene49295.t1 MTR_3g102100 60.345 58 22 1 25 82 45 101 1.12e-18 77.8
MS.gene49295.t1 MTR_8g085960 42.478 113 57 3 24 129 24 135 1.67e-18 79.0
MS.gene49295.t1 MTR_1g014860 57.627 59 24 1 25 83 22 79 2.43e-18 78.2
MS.gene49295.t1 MTR_3g106290 62.295 61 22 1 22 82 5 64 2.49e-18 77.4
MS.gene49295.t1 MTR_5g075570 58.621 58 23 1 25 82 124 180 3.63e-18 79.0
MS.gene49295.t1 MTR_2g019750 62.069 58 21 1 24 81 49 105 3.80e-18 79.0
MS.gene49295.t1 MTR_6g466130 53.333 75 28 2 25 99 66 133 4.18e-18 77.8
MS.gene49295.t1 MTR_1g074290 51.220 82 40 0 12 93 4 85 4.59e-18 76.3
MS.gene49295.t1 MTR_2g043040 53.846 65 29 1 20 84 14 77 4.90e-18 77.4
MS.gene49295.t1 MTR_1g014800 55.932 59 25 1 25 83 31 88 5.94e-18 77.0
MS.gene49295.t1 MTR_4g100650 60.345 58 22 1 25 82 74 130 8.18e-18 77.4
MS.gene49295.t1 MTR_1g019110 60.345 58 22 1 25 82 44 100 8.26e-18 75.9
MS.gene49295.t1 MTR_1g101600 52.000 75 29 2 25 99 41 108 8.68e-18 76.3
MS.gene49295.t1 MTR_2g043020 44.872 78 42 1 7 84 1 77 8.75e-18 76.3
MS.gene49295.t1 MTR_5g083340 61.667 60 22 1 24 83 84 142 1.32e-17 78.2
MS.gene49295.t1 MTR_0939s0010 58.065 62 25 1 22 83 62 122 1.57e-17 75.5
MS.gene49295.t1 MTR_4g010640 57.627 59 24 1 24 82 6 63 2.08e-17 75.5
MS.gene49295.t1 MTR_4g114570 57.627 59 24 1 24 82 6 63 2.12e-17 75.5
MS.gene49295.t1 MTR_5g008470 44.944 89 37 3 16 99 61 142 2.68e-17 74.7
MS.gene49295.t1 MTR_3g098580 61.429 70 26 1 18 87 69 137 2.90e-17 75.9
MS.gene49295.t1 MTR_8g023680 50.704 71 33 2 2 72 94 162 3.38e-17 77.0
MS.gene49295.t1 MTR_6g465530 52.055 73 28 2 25 97 33 98 5.57e-17 73.9
MS.gene49295.t1 MTR_3g105510 50.769 65 31 1 17 81 29 92 5.97e-17 75.1
MS.gene49295.t1 MTR_2g103700 55.932 59 25 1 24 82 6 63 8.32e-17 73.2
MS.gene49295.t1 MTR_6g465690 50.667 75 30 2 25 99 63 130 9.90e-17 74.7
MS.gene49295.t1 MTR_5g008540 56.140 57 24 1 27 83 26 81 1.20e-16 70.9
MS.gene49295.t1 MTR_4g111915 53.846 65 29 1 22 86 50 113 1.22e-16 72.0
MS.gene49295.t1 MTR_6g466000 42.391 92 46 2 25 116 57 141 1.74e-16 73.6
MS.gene49295.t1 MTR_4g112490 53.846 65 29 1 22 86 50 113 1.76e-16 72.8
MS.gene49295.t1 MTR_6g465510 52.055 73 28 2 25 97 33 98 1.79e-16 73.2
MS.gene49295.t1 MTR_3g095190 72.881 59 15 1 24 82 169 226 2.07e-16 74.7
MS.gene49295.t1 MTR_6g465850 42.391 92 46 2 25 116 63 147 4.32e-16 73.2
MS.gene49295.t1 MTR_6g465460 52.000 75 29 2 25 99 54 121 5.50e-16 72.8
MS.gene49295.t1 MTR_5g008590 56.000 75 26 2 25 99 11 78 6.16e-16 71.2
MS.gene49295.t1 MTR_1g074270 54.688 64 16 2 23 85 17 68 6.27e-16 69.3
MS.gene49295.t1 MTR_1g006660 56.410 78 27 2 25 102 47 117 6.30e-16 72.4
MS.gene49295.t1 MTR_7g085810 56.897 58 24 1 24 81 29 85 8.88e-16 72.0
MS.gene49295.t1 MTR_6g012970 55.172 58 25 1 24 81 37 93 1.36e-15 72.8
MS.gene49295.t1 MTR_6g029180 55.172 58 25 1 24 81 32 88 1.43e-15 72.0
MS.gene49295.t1 MTR_6g465430 50.667 75 30 2 25 99 54 121 1.56e-15 71.2
MS.gene49295.t1 MTR_6g465450 50.667 75 30 2 25 99 54 121 1.67e-15 71.2
MS.gene49295.t1 MTR_4g102670 51.282 78 30 3 25 102 15 84 2.02e-15 69.3
MS.gene49295.t1 MTR_7g028925 49.315 73 32 3 11 83 16 83 2.32e-15 67.4
MS.gene49295.t1 MTR_5g008550 50.667 75 30 2 25 99 21 88 2.97e-15 69.3
MS.gene49295.t1 MTR_6g033255 66.154 65 21 1 18 82 13 76 3.21e-15 69.7
MS.gene49295.t1 MTR_5g083330 56.667 60 25 1 24 83 34 92 3.69e-15 70.9
MS.gene49295.t1 MTR_2g016730 55.172 58 25 1 24 81 22 78 5.67e-15 70.5
MS.gene49295.t1 MTR_6g088425 56.410 78 27 2 25 102 49 119 6.41e-15 69.3
MS.gene49295.t1 MTR_6g465420 49.333 75 31 2 25 99 54 121 1.13e-14 68.9
MS.gene49295.t1 MTR_1g097190 60.000 50 19 1 25 74 23 71 1.17e-14 66.6
MS.gene49295.t1 MTR_5g057810 62.745 51 18 1 23 73 86 135 1.34e-14 69.3
MS.gene49295.t1 MTR_5g057647 62.745 51 18 1 23 73 86 135 1.34e-14 69.3
MS.gene49295.t1 MTR_3g056750 42.857 70 37 1 22 91 32 98 1.61e-14 65.1
MS.gene49295.t1 MTR_3g105480 52.727 55 25 1 27 81 33 86 7.02e-14 66.6
MS.gene49295.t1 MTR_6g466020 52.542 59 27 1 25 83 43 100 9.04e-14 65.5
MS.gene49295.t1 MTR_8g032610 51.724 58 27 1 24 81 26 82 9.69e-14 67.0
MS.gene49295.t1 MTR_7g070220 52.174 69 26 2 19 81 73 140 9.83e-14 67.4
MS.gene49295.t1 MTR_1g110970 44.304 79 39 3 24 101 96 170 1.16e-13 67.0
MS.gene49295.t1 MTR_7g011630 55.172 58 25 1 24 81 41 97 1.31e-13 67.0
MS.gene49295.t1 MTR_1g105400 55.102 49 21 1 24 72 114 161 2.59e-13 65.9
MS.gene49295.t1 MTR_2g085015 43.836 73 39 2 25 95 47 119 4.36e-13 64.3
MS.gene49295.t1 MTR_8g023700 58.333 48 19 1 25 72 117 163 5.43e-13 65.1
MS.gene49295.t1 MTR_3g017420 50.000 54 26 1 32 85 2 54 5.47e-13 60.8
MS.gene49295.t1 MTR_4g082345 53.448 58 26 1 24 81 47 103 7.64e-13 64.3
MS.gene49295.t1 MTR_3g112440 53.623 69 31 1 14 82 28 95 1.65e-12 62.8
MS.gene49295.t1 MTR_1g098460 61.538 65 24 1 32 96 146 209 4.37e-12 62.4
MS.gene49295.t1 MTR_5g085130 55.556 72 30 2 22 93 15 84 4.94e-12 60.8
MS.gene49295.t1 MTR_5g010940 48.387 62 27 1 25 81 54 115 6.14e-12 61.2
MS.gene49295.t1 MTR_4g102660 47.692 65 28 1 35 99 56 114 6.27e-12 61.2
MS.gene49295.t1 MTR_6g037610 76.471 51 11 1 32 82 187 236 6.72e-12 62.0
MS.gene49295.t1 MTR_1g023170 52.174 69 32 1 14 82 29 96 7.57e-12 61.2
MS.gene49295.t1 MTR_5g010930 48.387 62 27 1 25 81 49 110 8.58e-12 60.8
MS.gene49295.t1 MTR_5g010910 48.387 62 27 1 25 81 49 110 1.04e-11 60.5
MS.gene49295.t1 MTR_4g048250 62.500 40 14 1 22 61 5 43 2.28e-11 57.8
MS.gene49295.t1 MTR_5g015070 36.842 95 51 3 1 86 229 323 2.85e-11 60.5
MS.gene49295.t1 MTR_5g008790 45.161 62 31 2 24 83 17 77 3.14e-11 58.2
MS.gene49295.t1 MTR_1g012470 57.627 59 24 1 24 82 6 63 4.85e-11 58.2
MS.gene49295.t1 MTR_8g010340 63.043 46 16 1 36 81 118 162 5.13e-11 59.3
MS.gene49295.t1 MTR_5g053920 39.024 82 44 2 3 81 41 119 6.34e-11 59.3
MS.gene49295.t1 MTR_3g107380 57.627 59 24 1 24 82 7 64 9.87e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49295.t1 AT3G23230 57.143 119 48 2 22 140 17 132 1.17e-36 123
MS.gene49295.t1 AT5G51190 73.438 64 17 0 21 84 68 131 2.65e-30 109
MS.gene49295.t1 AT5G43410 68.056 72 22 1 14 85 5 75 3.88e-30 106
MS.gene49295.t1 AT2G33710 59.140 93 36 2 9 101 54 144 8.14e-30 107
MS.gene49295.t1 AT2G33710 59.140 93 36 2 9 101 54 144 1.10e-29 107
MS.gene49295.t1 AT5G07580 64.865 74 23 1 21 91 106 179 4.06e-29 105
MS.gene49295.t1 AT5G61600 65.217 69 24 0 25 93 88 156 6.62e-29 106
MS.gene49295.t1 AT4G17490 76.667 60 14 0 25 84 137 196 2.16e-28 105
MS.gene49295.t1 AT5G47230 75.000 60 15 0 25 84 156 215 2.66e-28 105
MS.gene49295.t1 AT2G31230 62.338 77 29 0 8 84 69 145 7.82e-28 103
MS.gene49295.t1 AT3G15210 61.644 73 27 1 11 83 11 82 1.69e-27 102
MS.gene49295.t1 AT5G47220 74.138 58 15 0 25 82 117 174 2.25e-27 102
MS.gene49295.t1 AT3G23240 73.333 60 16 0 25 84 82 141 3.44e-27 101
MS.gene49295.t1 AT4G17500 74.138 58 15 0 25 82 148 205 9.61e-27 101
MS.gene49295.t1 AT1G03800 60.294 68 26 1 15 82 43 109 9.80e-27 100
MS.gene49295.t1 AT3G23220 67.532 77 21 1 19 91 8 84 1.39e-26 97.4
MS.gene49295.t1 AT2G47520 72.881 59 15 1 25 83 50 107 1.67e-26 98.2
MS.gene49295.t1 AT2G44840 49.057 106 53 1 23 128 90 194 1.90e-26 99.4
MS.gene49295.t1 AT5G13330 60.000 70 27 1 25 94 39 107 3.69e-26 98.6
MS.gene49295.t1 AT1G72360 57.303 89 32 2 1 84 45 132 1.03e-25 98.2
MS.gene49295.t1 AT1G72360 70.492 61 17 1 24 84 24 83 1.07e-25 97.1
MS.gene49295.t1 AT1G72360 70.492 61 17 1 24 84 75 134 4.19e-25 96.7
MS.gene49295.t1 AT3G16770 72.881 59 15 1 25 83 79 136 4.74e-25 96.3
MS.gene49295.t1 AT5G44210 67.213 61 19 1 22 82 30 89 9.74e-25 94.4
MS.gene49295.t1 AT4G18450 54.545 88 25 2 24 96 109 196 2.16e-24 95.9
MS.gene49295.t1 AT1G50640 63.636 66 23 1 17 82 20 84 2.37e-24 94.0
MS.gene49295.t1 AT1G28370 56.098 82 30 3 1 82 1 76 4.86e-24 91.7
MS.gene49295.t1 AT1G28370 62.687 67 20 2 16 82 53 114 9.68e-24 92.0
MS.gene49295.t1 AT1G04370 49.194 124 43 2 20 143 15 118 2.01e-23 89.4
MS.gene49295.t1 AT5G61890 61.765 68 25 1 25 92 90 156 3.36e-23 91.7
MS.gene49295.t1 AT3G61630 70.690 58 16 1 24 81 104 160 6.02e-23 92.0
MS.gene49295.t1 AT1G71450 52.273 88 35 2 10 97 9 89 9.05e-23 89.0
MS.gene49295.t1 AT4G32800 46.875 96 44 2 7 102 1 89 1.39e-22 89.4
MS.gene49295.t1 AT3G20310 50.538 93 41 2 7 99 9 96 1.77e-22 89.7
MS.gene49295.t1 AT4G11140 67.797 59 18 1 24 82 86 143 2.31e-22 90.1
MS.gene49295.t1 AT1G06160 75.862 58 14 0 25 82 82 139 2.33e-22 89.4
MS.gene49295.t1 AT1G28360 62.903 62 22 1 22 83 9 69 3.09e-22 87.8
MS.gene49295.t1 AT1G12980 59.494 79 30 2 4 81 35 112 6.88e-22 89.4
MS.gene49295.t1 AT5G61590 66.197 71 21 1 25 92 107 177 1.46e-21 86.3
MS.gene49295.t1 AT2G46310 66.102 59 19 1 23 81 97 154 1.77e-21 87.8
MS.gene49295.t1 AT4G28140 63.934 61 21 1 25 85 143 202 1.93e-21 87.8
MS.gene49295.t1 AT2G22200 66.102 59 19 1 25 83 71 128 7.09e-21 85.5
MS.gene49295.t1 AT1G22190 52.747 91 36 3 6 91 65 153 8.65e-21 85.5
MS.gene49295.t1 AT5G13910 60.274 73 26 2 21 91 14 85 9.54e-21 84.3
MS.gene49295.t1 AT1G24590 67.797 59 18 1 23 81 56 113 1.88e-20 85.1
MS.gene49295.t1 AT4G16750 50.000 88 42 2 9 95 24 110 2.01e-20 82.8
MS.gene49295.t1 AT4G06746 56.061 66 28 1 19 84 30 94 2.12e-20 82.0
MS.gene49295.t1 AT4G27950 40.945 127 58 4 21 132 114 238 2.38e-20 85.5
MS.gene49295.t1 AT1G01250 45.361 97 42 3 10 102 26 115 3.12e-20 82.4
MS.gene49295.t1 AT1G78080 60.000 70 27 1 14 83 141 209 3.16e-20 85.1
MS.gene49295.t1 AT2G44940 50.000 86 36 2 17 102 92 170 3.31e-20 84.3
MS.gene49295.t1 AT1G28160 65.574 61 20 1 21 81 35 94 4.22e-20 83.2
MS.gene49295.t1 AT4G13620 66.102 59 19 1 25 83 232 289 4.25e-20 85.1
MS.gene49295.t1 AT4G31060 56.667 60 25 1 25 84 27 85 4.25e-20 82.0
MS.gene49295.t1 AT5G11590 52.564 78 30 2 25 102 51 121 4.97e-20 82.8
MS.gene49295.t1 AT3G16280 62.712 59 21 1 25 83 61 118 5.64e-20 82.8
MS.gene49295.t1 AT1G36060 68.966 58 17 1 25 82 143 199 6.19e-20 84.0
MS.gene49295.t1 AT4G39780 63.934 61 21 1 22 82 90 149 6.69e-20 83.2
MS.gene49295.t1 AT2G25820 64.407 59 20 1 25 83 26 83 7.22e-20 82.4
MS.gene49295.t1 AT3G60490 46.000 100 43 3 3 102 53 141 7.59e-20 82.8
MS.gene49295.t1 AT3G16280 62.712 59 21 1 25 83 79 136 8.26e-20 82.8
MS.gene49295.t1 AT5G25810 51.282 78 31 2 25 102 36 106 9.48e-20 82.0
MS.gene49295.t1 AT2G20880 63.934 61 21 1 25 85 187 246 1.25e-19 83.6
MS.gene49295.t1 AT4G23750 52.000 75 30 2 7 81 109 177 1.73e-19 83.2
MS.gene49295.t1 AT4G23750 52.000 75 30 2 7 81 109 177 1.73e-19 83.2
MS.gene49295.t1 AT5G53290 63.793 58 20 1 24 81 124 180 2.21e-19 82.8
MS.gene49295.t1 AT1G19210 52.941 68 31 1 16 83 3 69 2.99e-19 79.7
MS.gene49295.t1 AT1G75490 45.745 94 47 2 14 107 31 120 3.15e-19 80.1
MS.gene49295.t1 AT3G57600 52.857 70 32 1 14 83 17 85 4.75e-19 81.3
MS.gene49295.t1 AT5G25390 50.000 82 38 2 24 105 6 84 5.84e-19 79.3
MS.gene49295.t1 AT4G34410 77.586 58 12 1 25 82 136 192 7.52e-19 80.5
MS.gene49295.t1 AT5G64750 58.209 67 27 1 32 98 192 257 8.32e-19 81.6
MS.gene49295.t1 AT2G35700 54.167 72 31 2 25 95 45 115 9.47e-19 78.6
MS.gene49295.t1 AT1G46768 59.322 59 23 1 25 83 31 88 1.09e-18 77.4
MS.gene49295.t1 AT1G46768 59.322 59 23 1 25 83 31 88 1.11e-18 77.4
MS.gene49295.t1 AT1G46768 59.322 59 23 1 25 83 31 88 1.11e-18 77.4
MS.gene49295.t1 AT5G25190 58.108 74 29 2 22 94 5 77 1.21e-18 78.2
MS.gene49295.t1 AT1G74930 58.065 62 25 1 22 83 18 78 1.36e-18 78.2
MS.gene49295.t1 AT2G23340 55.072 69 30 1 14 82 17 84 1.60e-18 77.8
MS.gene49295.t1 AT5G18560 63.793 58 20 1 24 81 54 110 1.79e-18 80.5
MS.gene49295.t1 AT1G12890 45.370 108 49 3 24 131 20 117 2.02e-18 78.6
MS.gene49295.t1 AT4G36900 60.345 58 22 1 25 82 30 86 2.12e-18 77.8
MS.gene49295.t1 AT4G25480 61.017 59 22 1 25 83 51 108 2.86e-18 77.8
MS.gene49295.t1 AT5G65130 61.017 59 22 1 25 83 113 170 2.92e-18 79.0
MS.gene49295.t1 AT5G65130 61.017 59 22 1 25 83 111 168 3.06e-18 79.0
MS.gene49295.t1 AT1G43160 76.271 59 13 1 24 82 60 117 3.12e-18 77.4
MS.gene49295.t1 AT1G15360 61.017 59 22 1 24 82 6 63 3.54e-18 77.4
MS.gene49295.t1 AT1G15360 61.017 59 22 1 24 82 6 63 3.54e-18 77.4
MS.gene49295.t1 AT5G07310 58.904 73 29 1 25 97 92 163 4.01e-18 78.6
MS.gene49295.t1 AT3G50260 56.897 58 24 1 25 82 21 77 4.71e-18 75.9
MS.gene49295.t1 AT5G05410 39.831 118 60 4 22 129 76 192 6.33e-18 78.6
MS.gene49295.t1 AT5G18450 52.941 68 31 1 14 81 23 89 8.08e-18 78.2
MS.gene49295.t1 AT5G05410 39.831 118 60 4 22 129 76 192 8.42e-18 78.6
MS.gene49295.t1 AT2G36450 54.430 79 28 3 25 102 15 86 1.00e-17 75.9
MS.gene49295.t1 AT5G67190 58.621 58 23 1 25 82 21 77 1.11e-17 75.9
MS.gene49295.t1 AT1G53170 63.014 73 25 2 9 81 16 86 1.48e-17 75.5
MS.gene49295.t1 AT4G25470 59.322 59 23 1 25 83 51 108 1.62e-17 75.9
MS.gene49295.t1 AT5G21960 50.000 78 37 2 24 100 6 82 1.69e-17 75.9
MS.gene49295.t1 AT3G11020 52.778 72 33 1 22 93 75 145 1.82e-17 77.4
MS.gene49295.t1 AT5G25390 47.561 82 37 2 24 105 6 81 2.33e-17 75.1
MS.gene49295.t1 AT4G25490 59.322 59 23 1 25 83 48 105 2.37e-17 75.5
MS.gene49295.t1 AT2G40340 35.333 150 80 5 2 141 59 201 2.40e-17 77.4
MS.gene49295.t1 AT5G19790 53.521 71 30 2 21 91 18 85 2.46e-17 76.3
MS.gene49295.t1 AT5G50080 68.254 63 19 1 24 86 85 146 2.96e-17 75.5
MS.gene49295.t1 AT5G50080 68.254 63 19 1 24 86 76 137 3.03e-17 75.5
MS.gene49295.t1 AT2G40340 35.333 150 80 5 2 141 52 194 3.10e-17 77.0
MS.gene49295.t1 AT2G40340 35.507 138 75 4 14 141 3 136 3.26e-17 76.3
MS.gene49295.t1 AT2G40340 35.507 138 75 4 14 141 3 136 3.26e-17 76.3
MS.gene49295.t1 AT2G40340 35.507 138 75 4 14 141 3 136 3.26e-17 76.3
MS.gene49295.t1 AT3G14230 47.934 121 52 2 24 134 123 242 4.24e-17 76.6
MS.gene49295.t1 AT1G21910 56.897 58 24 1 25 82 50 106 4.29e-17 75.1
MS.gene49295.t1 AT3G14230 47.934 121 52 2 24 134 122 241 4.30e-17 76.6
MS.gene49295.t1 AT3G14230 47.934 121 52 2 24 134 127 246 4.32e-17 76.6
MS.gene49295.t1 AT1G22985 56.716 67 27 1 17 81 67 133 5.77e-17 73.2
MS.gene49295.t1 AT5G51990 40.000 100 53 2 25 124 54 146 1.07e-16 73.9
MS.gene49295.t1 AT1G53910 59.091 88 35 1 24 111 122 208 1.78e-16 75.1
MS.gene49295.t1 AT1G53910 59.091 88 35 1 24 111 124 210 1.86e-16 74.7
MS.gene49295.t1 AT1G53910 59.091 88 35 1 24 111 124 210 1.86e-16 74.7
MS.gene49295.t1 AT1G33760 58.974 78 28 2 19 93 14 90 6.56e-16 71.2
MS.gene49295.t1 AT1G68550 62.745 51 18 1 27 77 115 164 2.53e-15 71.6
MS.gene49295.t1 AT1G68550 62.745 51 18 1 27 77 115 164 2.53e-15 71.6
MS.gene49295.t1 AT1G12610 38.462 104 57 2 25 128 30 126 3.19e-15 69.7
MS.gene49295.t1 AT2G40340 43.434 99 49 3 2 100 52 143 3.50e-15 70.9
MS.gene49295.t1 AT1G71520 40.870 115 47 6 17 125 6 105 5.37e-15 67.8
MS.gene49295.t1 AT2G40350 44.444 72 39 1 11 82 60 130 3.06e-14 66.2
MS.gene49295.t1 AT1G63030 43.590 78 37 2 25 102 30 100 3.07e-14 66.6
MS.gene49295.t1 AT1G63030 43.590 78 37 2 25 102 30 100 3.07e-14 66.6
MS.gene49295.t1 AT2G40350 44.444 72 39 1 11 82 53 123 3.40e-14 65.9
MS.gene49295.t1 AT1G22810 38.318 107 49 3 22 125 11 103 3.53e-14 65.5
MS.gene49295.t1 AT1G49120 54.545 66 28 2 8 72 69 133 5.33e-14 67.8
MS.gene49295.t1 AT1G77200 56.944 72 29 2 12 83 31 100 5.37e-14 67.0
MS.gene49295.t1 AT1G71130 55.072 69 25 3 24 86 78 146 1.22e-13 64.7
MS.gene49295.t1 AT2G40220 58.824 68 27 1 14 81 44 110 3.38e-13 65.5
MS.gene49295.t1 AT5G67000 54.386 57 25 1 24 80 120 175 3.72e-13 63.9
MS.gene49295.t1 AT1G68840 48.333 60 28 1 24 83 64 120 3.37e-12 62.8
MS.gene49295.t1 AT1G68840 48.333 60 28 1 24 83 64 120 3.37e-12 62.8
MS.gene49295.t1 AT1G12630 50.575 87 37 4 9 92 4 87 5.70e-12 60.8
MS.gene49295.t1 AT5G11190 57.627 59 24 1 24 82 6 63 4.11e-11 58.5
MS.gene49295.t1 AT1G77640 60.000 60 23 1 24 83 42 100 5.94e-11 58.9

Find 26 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTGTTCCTTTCCTTGTT+GGG 0.276387 1.1:-52222345 None:intergenic
ATTCTTGTTCCTTTCCTTGT+TGG 0.306700 1.1:-52222346 None:intergenic
GGTAATGAAGAAGATGAATT+AGG 0.336637 1.1:-52222481 None:intergenic
TTAGGAGCTTGATATTCATT+AGG 0.343090 1.1:-52222463 None:intergenic
CAAGGAAAGGAACAAGAATA+TGG 0.349600 1.1:+52222350 MS.gene49295:CDS
TCAACAAATGGAAATGGAAA+TGG 0.377781 1.1:+52222250 MS.gene49295:CDS
TCAAATTCAACAAATGGAAA+TGG 0.385482 1.1:+52222244 MS.gene49295:CDS
TCGTCTTACTCTGTTGATGA+TGG 0.389155 1.1:+52222568 MS.gene49295:CDS
TTAGTTTCAAATTCAACAAA+TGG 0.391292 1.1:+52222238 MS.gene49295:CDS
ACTATTGTGTACCATCTTGA+AGG 0.442554 1.1:-52222636 None:intergenic
GAGGAAGAAGAAGAAGGAGG+TGG 0.480416 1.1:-52222541 None:intergenic
TCAGATCAAATAAAGTATAG+AGG 0.490176 1.1:+52222277 MS.gene49295:CDS
GGTGGAGGATGCATAGTAAG+AGG 0.496769 1.1:-52222508 None:intergenic
GGAGGTGGATTAGAAGAAGG+TGG 0.511330 1.1:-52222526 None:intergenic
GAAGGAGGTGGATTAGAAGA+AGG 0.514553 1.1:-52222529 None:intergenic
CAGAAATTCGTGACCCAACA+AGG 0.518541 1.1:+52222332 MS.gene49295:CDS
CTTCAAGAACTCCTTCAAGA+TGG 0.541518 1.1:+52222625 MS.gene49295:CDS
AAAGGAACAAGAATATGGCT+TGG 0.542615 1.1:+52222355 MS.gene49295:CDS
GGTGGATTAGAAGAAGGTGG+AGG 0.553230 1.1:-52222523 None:intergenic
GGATGCATAGTAAGAGGCAT+AGG 0.561973 1.1:-52222502 None:intergenic
GAGGAATTCGTAGGAGACCA+TGG 0.576225 1.1:+52222296 MS.gene49295:CDS
AGGAATTCGTAGGAGACCAT+GGG 0.579289 1.1:+52222297 MS.gene49295:CDS
ATTCGTGACCCAACAAGGAA+AGG 0.579685 1.1:+52222337 MS.gene49295:CDS
AAAGAGGAAGAAGAAGAAGG+AGG 0.579857 1.1:-52222544 None:intergenic
TAAAGTATAGAGGAATTCGT+AGG 0.619444 1.1:+52222287 MS.gene49295:CDS
GGAATTCGTAGGAGACCATG+GGG 0.739426 1.1:+52222298 MS.gene49295:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTCAAATTCAACAAA+TGG + chr1.1:52222238-52222257 MS.gene49295:CDS 20.0%
! TCAAATTCAACAAATGGAAA+TGG + chr1.1:52222244-52222263 MS.gene49295:CDS 25.0%
! TCAGATCAAATAAAGTATAG+AGG + chr1.1:52222277-52222296 MS.gene49295:CDS 25.0%
GGTAATGAAGAAGATGAATT+AGG - chr1.1:52222484-52222503 None:intergenic 30.0%
TAAAGTATAGAGGAATTCGT+AGG + chr1.1:52222287-52222306 MS.gene49295:CDS 30.0%
TCAACAAATGGAAATGGAAA+TGG + chr1.1:52222250-52222269 MS.gene49295:CDS 30.0%
TTAGGAGCTTGATATTCATT+AGG - chr1.1:52222466-52222485 None:intergenic 30.0%
AAAGGAACAAGAATATGGCT+TGG + chr1.1:52222355-52222374 MS.gene49295:CDS 35.0%
AACAGAGTAAGACGAAAAAG+AGG - chr1.1:52222563-52222582 None:intergenic 35.0%
ATTCTTGTTCCTTTCCTTGT+TGG - chr1.1:52222349-52222368 None:intergenic 35.0%
CAAGGAAAGGAACAAGAATA+TGG + chr1.1:52222350-52222369 MS.gene49295:CDS 35.0%
GAAAAAGAGGAAGAAGAAGA+AGG - chr1.1:52222550-52222569 None:intergenic 35.0%
TTCTTGTTCCTTTCCTTGTT+GGG - chr1.1:52222348-52222367 None:intergenic 35.0%
! TTTTGATGAGCTTGAGTTCT+TGG + chr1.1:52222591-52222610 MS.gene49295:CDS 35.0%
AAAGAGGAAGAAGAAGAAGG+AGG - chr1.1:52222547-52222566 None:intergenic 40.0%
CTTCAAGAACTCCTTCAAGA+TGG + chr1.1:52222625-52222644 MS.gene49295:CDS 40.0%
! TCGTCTTACTCTGTTGATGA+TGG + chr1.1:52222568-52222587 MS.gene49295:CDS 40.0%
AGGAATTCGTAGGAGACCAT+GGG + chr1.1:52222297-52222316 MS.gene49295:CDS 45.0%
ATTCGTGACCCAACAAGGAA+AGG + chr1.1:52222337-52222356 MS.gene49295:CDS 45.0%
CAGAAATTCGTGACCCAACA+AGG + chr1.1:52222332-52222351 MS.gene49295:CDS 45.0%
! GGATGCATAGTAAGAGGCAT+AGG - chr1.1:52222505-52222524 None:intergenic 45.0%
! TCTGCTGCAAATTTTCCCCA+TGG - chr1.1:52222316-52222335 None:intergenic 45.0%
!! GAAGGAGGTGGATTAGAAGA+AGG - chr1.1:52222532-52222551 None:intergenic 45.0%
!!! GCTGCTGCTTTTCATTTTCG+TGG + chr1.1:52222418-52222437 MS.gene49295:CDS 45.0%
GAGGAAGAAGAAGAAGGAGG+TGG - chr1.1:52222544-52222563 None:intergenic 50.0%
GAGGAATTCGTAGGAGACCA+TGG + chr1.1:52222296-52222315 MS.gene49295:CDS 50.0%
GGAATTCGTAGGAGACCATG+GGG + chr1.1:52222298-52222317 MS.gene49295:CDS 50.0%
GGTGGAGGATGCATAGTAAG+AGG - chr1.1:52222511-52222530 None:intergenic 50.0%
!! GGAGGTGGATTAGAAGAAGG+TGG - chr1.1:52222529-52222548 None:intergenic 50.0%
!! GGTGGATTAGAAGAAGGTGG+AGG - chr1.1:52222526-52222545 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 52222220 52222657 52222220 ID=MS.gene49295
chr1.1 mRNA 52222220 52222657 52222220 ID=MS.gene49295.t1;Parent=MS.gene49295
chr1.1 exon 52222220 52222657 52222220 ID=MS.gene49295.t1.exon1;Parent=MS.gene49295.t1
chr1.1 CDS 52222220 52222657 52222220 ID=cds.MS.gene49295.t1;Parent=MS.gene49295.t1
Gene Sequence

>MS.gene49295

ATGGAAGGAGATCATAAATTAGTTTCAAATTCAACAAATGGAAATGGAAATGGAAATTCAGATCAAATAAAGTATAGAGGAATTCGTAGGAGACCATGGGGAAAATTTGCAGCAGAAATTCGTGACCCAACAAGGAAAGGAACAAGAATATGGCTTGGAACATTTGATACAGCTGAACAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTCAATTTTCCTAATGAATATCAAGCTCCTAATTCATCTTCTTCATTACCTATGCCTCTTACTATGCATCCTCCACCTTCTTCTAATCCACCTCCTTCTTCTTCTTCCTCTTTTTCGTCTTACTCTGTTGATGATGGTTTTGATGAGCTTGAGTTCTTGGATAATAAGTTGCTTCAAGAACTCCTTCAAGATGGTACACAATAG
Protein sequence

>MS.gene49295.t1

MEGDHKLVSNSTNGNGNGNSDQIKYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQAPNSSSSLPMPLTMHPPPSSNPPPSSSSSFSSYSVDDGFDELEFLDNKLLQELLQDGTQ