Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49330.t1 | XP_013468558.1 | 91.6 | 475 | 34 | 1 | 1 | 469 | 1 | 475 | 4.60E-246 | 860.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49330.t1 | Q8R1Q9 | 25.8 | 283 | 171 | 9 | 115 | 387 | 54 | 307 | 1.8e-12 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49330.t1 | A0A072VWX3 | 91.6 | 475 | 34 | 1 | 1 | 469 | 1 | 475 | 3.3e-246 | 860.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene49330 | 0.806867 | 6.68E-50 | -1.69E-46 |
| MS.gene04984 | MS.gene49330 | 0.806011 | 1.01E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene49330 | 0.817492 | 3.21E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene49330 | 0.802451 | 5.57E-49 | -1.69E-46 |
| MS.gene050516 | MS.gene49330 | 0.816731 | 4.75E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene49330 | 0.808002 | 3.84E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene49330 | 0.80883 | 2.55E-50 | -1.69E-46 |
| MS.gene050959 | MS.gene49330 | 0.810547 | 1.09E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene49330 | 0.806119 | 9.60E-50 | -1.69E-46 |
| MS.gene052207 | MS.gene49330 | 0.810468 | 1.14E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene49330 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene49330 | 0.801837 | 7.46E-49 | -1.69E-46 |
| MS.gene052564 | MS.gene49330 | 0.807158 | 5.79E-50 | -1.69E-46 |
| MS.gene052565 | MS.gene49330 | 0.808502 | 3.00E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene49330 | 0.804537 | 2.06E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene49330 | 0.800637 | 1.31E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene49330 | 0.82912 | 6.15E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene49330 | 0.810713 | 1.01E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene49330 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene49330 | 0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene49330 | 0.825627 | 4.23E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene49330 | 0.818097 | 2.34E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49330.t1 | MTR_1g070375 | 94.737 | 475 | 19 | 1 | 1 | 469 | 1 | 475 | 0.0 | 900 |
| MS.gene49330.t1 | MTR_1g070375 | 97.143 | 350 | 10 | 0 | 120 | 469 | 1 | 350 | 0.0 | 703 |
| MS.gene49330.t1 | MTR_2g098950 | 26.333 | 300 | 197 | 8 | 114 | 404 | 45 | 329 | 4.89e-15 | 76.6 |
| MS.gene49330.t1 | MTR_6g089480 | 25.397 | 315 | 202 | 9 | 102 | 402 | 14 | 309 | 6.47e-13 | 69.7 |
| MS.gene49330.t1 | MTR_1g076850 | 24.507 | 355 | 222 | 11 | 64 | 405 | 3 | 324 | 7.03e-13 | 70.1 |
| MS.gene49330.t1 | MTR_7g075860 | 24.516 | 310 | 189 | 10 | 114 | 403 | 72 | 356 | 2.55e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49330.t1 | AT1G06730 | 61.823 | 406 | 147 | 3 | 62 | 462 | 79 | 481 | 0.0 | 518 |
| MS.gene49330.t1 | AT5G51830 | 26.101 | 318 | 202 | 9 | 102 | 405 | 43 | 341 | 6.90e-14 | 73.2 |
| MS.gene49330.t1 | AT5G51830 | 26.101 | 318 | 202 | 9 | 102 | 405 | 43 | 341 | 6.90e-14 | 73.2 |
| MS.gene49330.t1 | AT2G31390 | 26.351 | 296 | 170 | 9 | 114 | 388 | 40 | 308 | 7.12e-13 | 70.1 |
| MS.gene49330.t1 | AT1G66430 | 26.578 | 301 | 187 | 10 | 102 | 388 | 85 | 365 | 2.42e-12 | 68.9 |
| MS.gene49330.t1 | AT3G59480 | 26.298 | 289 | 177 | 8 | 115 | 388 | 42 | 309 | 3.89e-12 | 67.8 |
| MS.gene49330.t1 | AT1G06020 | 22.965 | 344 | 210 | 12 | 62 | 388 | 4 | 309 | 2.05e-11 | 65.9 |
Find 112 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATTTGGGTTTGAATT+TGG | 0.095774 | 1.1:-52825953 | None:intergenic |
| TCCATGAAGATCGTGAATTT+TGG | 0.141116 | 1.1:+52830001 | MS.gene49330:CDS |
| AGAAAGGGGATGGAGAATTT+AGG | 0.167810 | 1.1:-52825903 | None:intergenic |
| AATTGGATGAAATTGAAATT+TGG | 0.191065 | 1.1:-52825965 | None:intergenic |
| GGCACATTCTCCACTGTCTT+TGG | 0.239368 | 1.1:-52830162 | None:intergenic |
| GCAAGGATCCTGCATTTAAT+TGG | 0.252553 | 1.1:+52827969 | MS.gene49330:CDS |
| ATTGGATGAAATTGAAATTT+GGG | 0.266578 | 1.1:-52825964 | None:intergenic |
| GAAAGGGGATGGAGAATTTA+GGG | 0.266715 | 1.1:-52825902 | None:intergenic |
| AGCGTGTGCACCTGCATTTA+AGG | 0.324315 | 1.1:+52829285 | MS.gene49330:CDS |
| GGATGGAGAATTTAGGGTTT+TGG | 0.328386 | 1.1:-52825896 | None:intergenic |
| CACATCAATCTTCTTTGATC+CGG | 0.345007 | 1.1:+52828123 | MS.gene49330:CDS |
| GATGATACTGTCAGCAGTTC+TGG | 0.355643 | 1.1:+52827777 | MS.gene49330:CDS |
| CACGTTGATGTTGCCACTTT+GGG | 0.356516 | 1.1:+52826066 | MS.gene49330:CDS |
| TTTGTAGCTGCTATTGCATA+TGG | 0.383282 | 1.1:+52829841 | MS.gene49330:CDS |
| TCCAAAATTCACGATCTTCA+TGG | 0.387406 | 1.1:-52830002 | None:intergenic |
| AGTGGCAACATCAACGTGTT+TGG | 0.396172 | 1.1:-52826061 | None:intergenic |
| GTCTTTGGAAACTCAAGCTT+GGG | 0.400311 | 1.1:-52830147 | None:intergenic |
| TAAAGCTCTCATGGAACATT+TGG | 0.401865 | 1.1:+52826152 | MS.gene49330:CDS |
| CGTCACTCATCCTCAGAAAC+TGG | 0.405365 | 1.1:-52828201 | None:intergenic |
| CATGTTGGTAATGAAATCTA+TGG | 0.407871 | 1.1:+52827693 | MS.gene49330:CDS |
| AACTCTTGCCCAGCTAATAT+CGG | 0.409872 | 1.1:-52829181 | None:intergenic |
| GGATTTGATGATTTCTCTCC+TGG | 0.416073 | 1.1:+52828061 | MS.gene49330:CDS |
| AGCTGGTGGGAACTGCAATA+TGG | 0.417528 | 1.1:+52827626 | MS.gene49330:CDS |
| TCAGAGGCAACCTTGTCAAA+TGG | 0.421078 | 1.1:-52830117 | None:intergenic |
| ACACGTTGATGTTGCCACTT+TGG | 0.423113 | 1.1:+52826065 | MS.gene49330:CDS |
| CTTATGAAACACTTCTATGC+TGG | 0.427598 | 1.1:+52827805 | MS.gene49330:CDS |
| ACAGCCATGGGCTGTGGTGC+CGG | 0.437629 | 1.1:+52829925 | MS.gene49330:CDS |
| CGTGGAAAGAGCCTCTCCTC+TGG | 0.440947 | 1.1:+52828151 | MS.gene49330:CDS |
| GTGGCATGGTGGTGATAGAA+AGG | 0.441290 | 1.1:-52825919 | None:intergenic |
| GGCTTCCTCTCCACCTCCCA+AGG | 0.443792 | 1.1:+52826173 | MS.gene49330:CDS |
| ATGCAGGCTGAGTCATTAAC+TGG | 0.444307 | 1.1:+52829148 | MS.gene49330:intron |
| CGGTAGGAATGTAGCATCTC+TGG | 0.451783 | 1.1:+52829945 | MS.gene49330:CDS |
| CAGAGGCAACCTTGTCAAAT+GGG | 0.455291 | 1.1:-52830116 | None:intergenic |
| GCATAGAAGTGTTTCATAAG+AGG | 0.457998 | 1.1:-52827802 | None:intergenic |
| GGACTTAACTGTGTATCAAT+TGG | 0.460566 | 1.1:+52827669 | MS.gene49330:CDS |
| TGAACATTGTTGACAGTGTT+GGG | 0.468406 | 1.1:+52829806 | MS.gene49330:CDS |
| AGTAGGTGCGGCAACAGCCA+TGG | 0.475177 | 1.1:+52829912 | MS.gene49330:CDS |
| AGGCTCTTTCCACGTGGTCC+CGG | 0.476064 | 1.1:-52828142 | None:intergenic |
| ATTTGGGTTTGAATTTGGAT+TGG | 0.476388 | 1.1:-52825948 | None:intergenic |
| ATAGGAGATCCGATATTAGC+TGG | 0.479806 | 1.1:+52829172 | MS.gene49330:CDS |
| GTGATACTGAGATTGAGAAT+TGG | 0.483949 | 1.1:-52825982 | None:intergenic |
| TGTCTTTGGAAACTCAAGCT+TGG | 0.484443 | 1.1:-52830148 | None:intergenic |
| GCGGCAACAGCCATGGGCTG+TGG | 0.488054 | 1.1:+52829919 | MS.gene49330:CDS |
| TTATGAAACACTTCTATGCT+GGG | 0.490537 | 1.1:+52827806 | MS.gene49330:CDS |
| GAATGTAGCATCTCTGGAAA+AGG | 0.490628 | 1.1:+52829951 | MS.gene49330:CDS |
| GAATTTGGATTGGAAGAAAG+TGG | 0.490661 | 1.1:-52825938 | None:intergenic |
| ACAGAAGGAGGTGGCAATTG+TGG | 0.491375 | 1.1:-52826120 | None:intergenic |
| TCCTAGCCTTGCAGCTGCTA+TGG | 0.495253 | 1.1:-52827649 | None:intergenic |
| ACATCAATCTTCTTTGATCC+GGG | 0.496885 | 1.1:+52828124 | MS.gene49330:CDS |
| GTGTAGAAACATTGGGAAGC+TGG | 0.501195 | 1.1:+52827609 | MS.gene49330:intron |
| TGGCATGGTGGTGATAGAAA+GGG | 0.502670 | 1.1:-52825918 | None:intergenic |
| TGAAGAACGTAAAGCTCTCA+TGG | 0.503803 | 1.1:+52826143 | MS.gene49330:CDS |
| CAAAACCCATGTCTCTGTAA+AGG | 0.506743 | 1.1:-52827840 | None:intergenic |
| AACGCTTCTCAGCTTCGAAT+CGG | 0.508401 | 1.1:-52826034 | None:intergenic |
| TTGCTCAGCCAATTAAATGC+AGG | 0.510676 | 1.1:-52827977 | None:intergenic |
| TGAAAAGAAAGTGATAGATC+AGG | 0.511007 | 1.1:+52830035 | MS.gene49330:CDS |
| AATGCTAATGTATTAACCAT+TGG | 0.518610 | 1.1:-52829880 | None:intergenic |
| GATGAGGGCATTAGCATGGT+TGG | 0.522641 | 1.1:+52827741 | MS.gene49330:CDS |
| CAACTTTGTCCCATTTGACA+AGG | 0.527209 | 1.1:+52830107 | MS.gene49330:CDS |
| GTGAACATTGTTGACAGTGT+TGG | 0.528046 | 1.1:+52829805 | MS.gene49330:CDS |
| GGGCAAGAGTTGCTTAAAAG+AGG | 0.533231 | 1.1:+52829193 | MS.gene49330:CDS |
| GATTCGAAGCTGAGAAGCGT+TGG | 0.533873 | 1.1:+52826036 | MS.gene49330:CDS |
| TGTGTATCAATTGGTCATGT+TGG | 0.537868 | 1.1:+52827678 | MS.gene49330:CDS |
| ATGAGGGCATTAGCATGGTT+GGG | 0.538624 | 1.1:+52827742 | MS.gene49330:CDS |
| CGTTCTTCAACAGAAGGAGG+TGG | 0.541446 | 1.1:-52826129 | None:intergenic |
| TGGTGGTGATAGAAAGGGGA+TGG | 0.542666 | 1.1:-52825913 | None:intergenic |
| GTAGGTGCGGCAACAGCCAT+GGG | 0.545610 | 1.1:+52829913 | MS.gene49330:CDS |
| GTCAGATGTGCTTCGTGATG+AGG | 0.552362 | 1.1:+52827725 | MS.gene49330:CDS |
| GCTTTACGTTCTTCAACAGA+AGG | 0.552762 | 1.1:-52826135 | None:intergenic |
| GTGGAAAGAGCCTCTCCTCT+GGG | 0.556111 | 1.1:+52828152 | MS.gene49330:CDS |
| GTTCTTGAGTCCCAGAGGAG+AGG | 0.557886 | 1.1:-52828162 | None:intergenic |
| CAGCTGTCAAAATATCAAGT+TGG | 0.558330 | 1.1:-52830183 | None:intergenic |
| ATTGTTGACAGTGTTGGGTG+TGG | 0.561805 | 1.1:+52829811 | MS.gene49330:CDS |
| CCATGGGCTGTGGTGCCGGT+AGG | 0.567182 | 1.1:+52829929 | MS.gene49330:CDS |
| TGAGAAGTTACCTTAAATGC+AGG | 0.567864 | 1.1:-52829295 | None:intergenic |
| CAGAGATGCTACATTCCTAC+CGG | 0.568773 | 1.1:-52829944 | None:intergenic |
| TTAGCATTTGCAAATGCAGT+AGG | 0.570503 | 1.1:+52829895 | MS.gene49330:CDS |
| AACACAGAGATTACCCAAAG+TGG | 0.572363 | 1.1:-52826079 | None:intergenic |
| TCAGATGTGCTTCGTGATGA+GGG | 0.574196 | 1.1:+52827726 | MS.gene49330:CDS |
| TGGTTTACTACTCTCAGTAG+TGG | 0.581346 | 1.1:+52828081 | MS.gene49330:CDS |
| ATATGGCCATAGCAGCTGCA+AGG | 0.584508 | 1.1:+52827643 | MS.gene49330:CDS |
| GCCATAGCAGCTGCAAGGCT+AGG | 0.584719 | 1.1:+52827648 | MS.gene49330:CDS |
| GTTGATCCTTTACAGAGACA+TGG | 0.587141 | 1.1:+52827834 | MS.gene49330:CDS |
| CCTACCGGCACCACAGCCCA+TGG | 0.589066 | 1.1:-52829929 | None:intergenic |
| GTGGACTGTGCTGTTGAAGT+TGG | 0.589939 | 1.1:+52828100 | MS.gene49330:CDS |
| GGCAAGAGTTGCTTAAAAGA+GGG | 0.592747 | 1.1:+52829194 | MS.gene49330:CDS |
| TTACGTTCTTCAACAGAAGG+AGG | 0.593555 | 1.1:-52826132 | None:intergenic |
| ATGTTGGTAATGAAATCTAT+GGG | 0.593558 | 1.1:+52827694 | MS.gene49330:CDS |
| TTACAATCACCCACTTTGTG+CGG | 0.595623 | 1.1:-52829219 | None:intergenic |
| TTCTTTGATCCGGGACCACG+TGG | 0.595825 | 1.1:+52828133 | MS.gene49330:CDS |
| AAGAGGGATCCGCACAAAGT+GGG | 0.597510 | 1.1:+52829210 | MS.gene49330:CDS |
| TTGATCCTTTACAGAGACAT+GGG | 0.597570 | 1.1:+52827835 | MS.gene49330:CDS |
| GAGCTCTTAACCAGTTTCTG+AGG | 0.600769 | 1.1:+52828191 | MS.gene49330:CDS |
| GGCATGGTGGTGATAGAAAG+GGG | 0.611493 | 1.1:-52825917 | None:intergenic |
| TAGAAACATTGGGAAGCTGG+TGG | 0.613030 | 1.1:+52827612 | MS.gene49330:intron |
| GCTGAGTCATTAACTGGCAT+AGG | 0.613196 | 1.1:+52829154 | MS.gene49330:CDS |
| ATAAACCTTGGGAGGTGGAG+AGG | 0.615378 | 1.1:-52826178 | None:intergenic |
| TAGGAGATCCGATATTAGCT+GGG | 0.616829 | 1.1:+52829173 | MS.gene49330:CDS |
| TCGTGATGAGGGCATTAGCA+TGG | 0.620050 | 1.1:+52827737 | MS.gene49330:CDS |
| CTGTTGTTCTTGAGTCCCAG+AGG | 0.629490 | 1.1:-52828167 | None:intergenic |
| AAAGAGGGATCCGCACAAAG+TGG | 0.631344 | 1.1:+52829209 | MS.gene49330:CDS |
| GCTTGAGTTTCCAAAGACAG+TGG | 0.639689 | 1.1:+52830152 | MS.gene49330:CDS |
| ATTTGCAAATGCAGTAGGTG+CGG | 0.643035 | 1.1:+52829900 | MS.gene49330:CDS |
| AGAAACATTGGGAAGCTGGT+GGG | 0.649654 | 1.1:+52827613 | MS.gene49330:intron |
| GTGGATGGAACTGAGAGGAG+AGG | 0.656061 | 1.1:-52825871 | None:intergenic |
| TGGATTGGAAGAAAGTGGCA+TGG | 0.661591 | 1.1:-52825933 | None:intergenic |
| TCTTCTTCTAACATCTGACG+AGG | 0.678328 | 1.1:+52828225 | MS.gene49330:CDS |
| AAGCTTGGGCAAGAGCTCAG+AGG | 0.678959 | 1.1:-52830133 | None:intergenic |
| ACTACTGAGAGTAGTAAACC+AGG | 0.679000 | 1.1:-52828079 | None:intergenic |
| ATTGGAAGAAAGTGGCATGG+TGG | 0.690982 | 1.1:-52825930 | None:intergenic |
| GAGGAGAGGCTCTTTCCACG+TGG | 0.712337 | 1.1:-52828148 | None:intergenic |
| TGGTGGTGGATGGAACTGAG+AGG | 0.713610 | 1.1:-52825876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAAATATTTCAGT+AGG | - | chr1.1:52829570-52829589 | None:intergenic | 10.0% |
| !! | CTATAATAAACAAAAAAAAA+AGG | - | chr1.1:52827909-52827928 | None:intergenic | 10.0% |
| !! | TTACTTAATCTTAAAATAAA+TGG | + | chr1.1:52828969-52828988 | MS.gene49330:intron | 10.0% |
| !! | TTATATATATTCTGTTTATA+AGG | + | chr1.1:52828508-52828527 | MS.gene49330:intron | 10.0% |
| !!! | CTTTATATTTTAAAACATAA+TGG | + | chr1.1:52829518-52829537 | MS.gene49330:intron | 10.0% |
| !! | AATGATAAAATTTATTCAAG+GGG | + | chr1.1:52827024-52827043 | MS.gene49330:intron | 15.0% |
| !! | ATAAATATAGAAGTGATTAA+TGG | - | chr1.1:52829065-52829084 | None:intergenic | 15.0% |
| !! | ATTAGCTATTAAAAATTCAA+AGG | + | chr1.1:52828018-52828037 | MS.gene49330:CDS | 15.0% |
| !! | ATTGATATTCTTCAATATAA+GGG | - | chr1.1:52827251-52827270 | None:intergenic | 15.0% |
| !! | CAATGATAAAATTTATTCAA+GGG | + | chr1.1:52827023-52827042 | MS.gene49330:intron | 15.0% |
| !! | TAAATATAGAAGTGATTAAT+GGG | - | chr1.1:52829064-52829083 | None:intergenic | 15.0% |
| !! | TTAATAGATCTAAATTTCAT+AGG | + | chr1.1:52826913-52826932 | MS.gene49330:intron | 15.0% |
| !!! | AAACTACAAATAACTTTTAA+AGG | - | chr1.1:52828694-52828713 | None:intergenic | 15.0% |
| !!! | AACAGTTTTGTAATTAAAAA+GGG | + | chr1.1:52826588-52826607 | MS.gene49330:intron | 15.0% |
| !!! | ATAATTTGTCTAAAGATTAT+TGG | + | chr1.1:52828844-52828863 | MS.gene49330:intron | 15.0% |
| !!! | CTTCTATATTTATAATTTGT+AGG | + | chr1.1:52829072-52829091 | MS.gene49330:intron | 15.0% |
| !!! | TAACAGTTTTGTAATTAAAA+AGG | + | chr1.1:52826587-52826606 | MS.gene49330:intron | 15.0% |
| !!! | TGAATAACATTTTACAATTT+TGG | - | chr1.1:52826698-52826717 | None:intergenic | 15.0% |
| !!! | TTAAAGATTTTATGCTTATT+CGG | - | chr1.1:52827345-52827364 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTTCTTTTTTCTT+TGG | + | chr1.1:52828348-52828367 | MS.gene49330:intron | 15.0% |
| !! | AACAAAACAAAAAACAATAC+AGG | - | chr1.1:52826260-52826279 | None:intergenic | 20.0% |
| !! | AATTGGATGAAATTGAAATT+TGG | - | chr1.1:52825968-52825987 | None:intergenic | 20.0% |
| !! | ATTGGATGAAATTGAAATTT+GGG | - | chr1.1:52825967-52825986 | None:intergenic | 20.0% |
| !! | CCAATGATAAAATTTATTCA+AGG | + | chr1.1:52827022-52827041 | MS.gene49330:intron | 20.0% |
| !! | GAGTTATCACAAAAATTTAA+TGG | - | chr1.1:52829745-52829764 | None:intergenic | 20.0% |
| !! | GATTGATATTCTTCAATATA+AGG | - | chr1.1:52827252-52827271 | None:intergenic | 20.0% |
| !! | GATTTATAAATTATGTCATC+AGG | + | chr1.1:52829783-52829802 | MS.gene49330:intron | 20.0% |
| !! | TTAAAATAAATGGTATGAAG+TGG | + | chr1.1:52828979-52828998 | MS.gene49330:intron | 20.0% |
| !! | TTAAAATGAAATTCCAGTTT+AGG | + | chr1.1:52829457-52829476 | MS.gene49330:intron | 20.0% |
| !!! | AAAATCATGAAATCTTTTGA+CGG | + | chr1.1:52827098-52827117 | MS.gene49330:intron | 20.0% |
| !!! | ACAGTTTTGTAATTAAAAAG+GGG | + | chr1.1:52826589-52826608 | MS.gene49330:intron | 20.0% |
| !!! | ATAGCTTATGAATACAATTT+TGG | + | chr1.1:52826379-52826398 | MS.gene49330:intron | 20.0% |
| !!! | ATTTTCCCTTTAAATTGTAA+GGG | - | chr1.1:52827464-52827483 | None:intergenic | 20.0% |
| !!! | CCTTGAATAAATTTTATCAT+TGG | - | chr1.1:52827025-52827044 | None:intergenic | 20.0% |
| !!! | TATTATTTTTTTGTCGAGAA+AGG | - | chr1.1:52826550-52826569 | None:intergenic | 20.0% |
| !!! | TATTTTCCCTTTAAATTGTA+AGG | - | chr1.1:52827465-52827484 | None:intergenic | 20.0% |
| !!! | TGAATAAATTTTATCATTGG+AGG | - | chr1.1:52827022-52827041 | None:intergenic | 20.0% |
| !!! | TTGATAATTCCTTTGATATT+AGG | - | chr1.1:52829619-52829638 | None:intergenic | 20.0% |
| !!! | TTTAAAATATAAAGTGTCTG+TGG | - | chr1.1:52829512-52829531 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTTGCAAAATTTA+TGG | + | chr1.1:52829704-52829723 | MS.gene49330:intron | 20.0% |
| ! | AAAAAGTGACAAGTTATACT+TGG | - | chr1.1:52829660-52829679 | None:intergenic | 25.0% |
| ! | AAATTTCAATACACTTCACT+TGG | + | chr1.1:52828717-52828736 | MS.gene49330:intron | 25.0% |
| ! | AAGTACCATAGTATATAACT+TGG | - | chr1.1:52828605-52828624 | None:intergenic | 25.0% |
| ! | AATATAAAGTCCTTAGCATT+AGG | - | chr1.1:52828489-52828508 | None:intergenic | 25.0% |
| ! | AATGCTAATGTATTAACCAT+TGG | - | chr1.1:52829883-52829902 | None:intergenic | 25.0% |
| ! | AATTTCAATACACTTCACTT+GGG | + | chr1.1:52828718-52828737 | MS.gene49330:intron | 25.0% |
| ! | ACTGACATTGTTCAATTTAA+AGG | + | chr1.1:52827395-52827414 | MS.gene49330:intron | 25.0% |
| ! | AGGGAAAATATATAATGAGA+CGG | + | chr1.1:52827475-52827494 | MS.gene49330:intron | 25.0% |
| ! | ATTAATTCATAAGCTTGTCA+AGG | + | chr1.1:52826335-52826354 | MS.gene49330:intron | 25.0% |
| ! | ATTCAGGTAAAAATAAACCT+TGG | - | chr1.1:52826193-52826212 | None:intergenic | 25.0% |
| ! | ATTGCCTATTTACTCTTAAA+AGG | + | chr1.1:52827144-52827163 | MS.gene49330:intron | 25.0% |
| ! | ATTGTAAAAATGGGTCTTAA+GGG | + | chr1.1:52829235-52829254 | MS.gene49330:CDS | 25.0% |
| ! | TAAGATTAAGTAACAAGAGT+GGG | - | chr1.1:52828962-52828981 | None:intergenic | 25.0% |
| ! | TCAAAATCATGTGAAACAAT+TGG | + | chr1.1:52828757-52828776 | MS.gene49330:intron | 25.0% |
| ! | TTAAATTGTAGTGCTAAGTT+TGG | + | chr1.1:52827361-52827380 | MS.gene49330:intron | 25.0% |
| ! | TTAAGATTAAGTAACAAGAG+TGG | - | chr1.1:52828963-52828982 | None:intergenic | 25.0% |
| ! | TTCAGGTAAAAATAAACCTT+GGG | - | chr1.1:52826192-52826211 | None:intergenic | 25.0% |
| ! | TTGCCTATTTACTCTTAAAA+GGG | + | chr1.1:52827145-52827164 | MS.gene49330:intron | 25.0% |
| ! | TTTCGTGATTCAAATTGTAA+TGG | + | chr1.1:52827182-52827201 | MS.gene49330:intron | 25.0% |
| ! | TTTCTCCAAGTTATATACTA+TGG | + | chr1.1:52828597-52828616 | MS.gene49330:intron | 25.0% |
| !! | ACAGTGTTCTTGATTTTATT+CGG | + | chr1.1:52826219-52826238 | MS.gene49330:intron | 25.0% |
| !! | TCATATTTTCATGCTACAAA+TGG | + | chr1.1:52827557-52827576 | MS.gene49330:intron | 25.0% |
| !! | TGAACAATGCTTACAATTTT+GGG | - | chr1.1:52826635-52826654 | None:intergenic | 25.0% |
| !! | TTGAAATTTGGGTTTGAATT+TGG | - | chr1.1:52825956-52825975 | None:intergenic | 25.0% |
| !! | TTGAACAATGCTTACAATTT+TGG | - | chr1.1:52826636-52826655 | None:intergenic | 25.0% |
| !!! | ATGTTGGTAATGAAATCTAT+GGG | + | chr1.1:52827694-52827713 | MS.gene49330:CDS | 25.0% |
| !!! | CTGTCAAATATTTTGATGAA+TGG | + | chr1.1:52830069-52830088 | MS.gene49330:CDS | 25.0% |
| !!! | GTTTTGTTTTGTAATGGATA+TGG | + | chr1.1:52828040-52828059 | MS.gene49330:CDS | 25.0% |
| !!! | TCAAAGGTTTTGTTTTGTAA+TGG | + | chr1.1:52828034-52828053 | MS.gene49330:CDS | 25.0% |
| AAAAATTTGCCAATCCAAAC+GGG | + | chr1.1:52826467-52826486 | MS.gene49330:intron | 30.0% | |
| AAAGTGGGTGATTGTAAAAA+TGG | + | chr1.1:52829225-52829244 | MS.gene49330:CDS | 30.0% | |
| AACACTGTATAAGGTTAAGA+AGG | - | chr1.1:52828534-52828553 | None:intergenic | 30.0% | |
| AAGATGAAGACAGATTAACA+TGG | - | chr1.1:52828461-52828480 | None:intergenic | 30.0% | |
| AAGCAATCACAGTTCTATTA+AGG | - | chr1.1:52828284-52828303 | None:intergenic | 30.0% | |
| AAGTGGGTGATTGTAAAAAT+GGG | + | chr1.1:52829226-52829245 | MS.gene49330:CDS | 30.0% | |
| AATAGTAGAGGACAAATAGT+AGG | - | chr1.1:52828315-52828334 | None:intergenic | 30.0% | |
| AATTAAAAAGGGGAGTGAAT+AGG | + | chr1.1:52826599-52826618 | MS.gene49330:intron | 30.0% | |
| ACAATTGGAACAGTAGAAAA+AGG | + | chr1.1:52828772-52828791 | MS.gene49330:intron | 30.0% | |
| ACTGACCCTTACAATTTAAA+GGG | + | chr1.1:52827456-52827475 | MS.gene49330:intron | 30.0% | |
| AGAACACTGTAATGTAATTC+AGG | - | chr1.1:52826209-52826228 | None:intergenic | 30.0% | |
| AGGTCATATCAATCACAAAT+TGG | + | chr1.1:52826844-52826863 | MS.gene49330:intron | 30.0% | |
| AGGTTCCAAATCATGTTTAT+TGG | - | chr1.1:52828674-52828693 | None:intergenic | 30.0% | |
| AGTGTGAATTGTGAGTTTAA+AGG | + | chr1.1:52828867-52828886 | MS.gene49330:intron | 30.0% | |
| ATCTTCATATCCTAATGCTA+AGG | + | chr1.1:52828476-52828495 | MS.gene49330:intron | 30.0% | |
| CAAAAATTTGCCAATCCAAA+CGG | + | chr1.1:52826466-52826485 | MS.gene49330:intron | 30.0% | |
| CCATAATTGCAAATAATCGA+TGG | - | chr1.1:52829343-52829362 | None:intergenic | 30.0% | |
| CTATGGTACTTGCATATTTA+TGG | + | chr1.1:52828614-52828633 | MS.gene49330:intron | 30.0% | |
| GATTGTAAAAATGGGTCTTA+AGG | + | chr1.1:52829234-52829253 | MS.gene49330:CDS | 30.0% | |
| GGAGAATCTTTAAACTGATT+TGG | + | chr1.1:52828793-52828812 | MS.gene49330:intron | 30.0% | |
| GGTTCCAAATCATGTTTATT+GGG | - | chr1.1:52828673-52828692 | None:intergenic | 30.0% | |
| GTAAAAATGATTCACTGTCA+TGG | + | chr1.1:52827866-52827885 | MS.gene49330:intron | 30.0% | |
| GTATGAAGTGGCAAAATTAA+GGG | + | chr1.1:52828991-52829010 | MS.gene49330:intron | 30.0% | |
| GTGTGAATTGTGAGTTTAAA+GGG | + | chr1.1:52828868-52828887 | MS.gene49330:intron | 30.0% | |
| GTTCCAAATCATGTTTATTG+GGG | - | chr1.1:52828672-52828691 | None:intergenic | 30.0% | |
| TGAAAAGAAAGTGATAGATC+AGG | + | chr1.1:52830035-52830054 | MS.gene49330:CDS | 30.0% | |
| TGACACAGTAATTGAATTTG+TGG | - | chr1.1:52826989-52827008 | None:intergenic | 30.0% | |
| TGATATGACCTACATTTCAT+AGG | - | chr1.1:52826835-52826854 | None:intergenic | 30.0% | |
| TGCCTATTTACTCTTAAAAG+GGG | + | chr1.1:52827146-52827165 | MS.gene49330:intron | 30.0% | |
| TGTGAATTGTGAGTTTAAAG+GGG | + | chr1.1:52828869-52828888 | MS.gene49330:intron | 30.0% | |
| TTATGAAACACTTCTATGCT+GGG | + | chr1.1:52827806-52827825 | MS.gene49330:CDS | 30.0% | |
| TTCATTAATCTGACCTAAAC+TGG | - | chr1.1:52829473-52829492 | None:intergenic | 30.0% | |
| TTCCAACATCCTAATATCAA+AGG | + | chr1.1:52829607-52829626 | MS.gene49330:intron | 30.0% | |
| TTCCTTTGATATTAGGATGT+TGG | - | chr1.1:52829612-52829631 | None:intergenic | 30.0% | |
| TTTCCCCAATAAACATGATT+TGG | + | chr1.1:52828666-52828685 | MS.gene49330:intron | 30.0% | |
| ! | AATAGCTAATTTTGCTTCTC+TGG | - | chr1.1:52828008-52828027 | None:intergenic | 30.0% |
| ! | ATTTGGGTTTGAATTTGGAT+TGG | - | chr1.1:52825951-52825970 | None:intergenic | 30.0% |
| ! | CCATCGATTATTTGCAATTA+TGG | + | chr1.1:52829340-52829359 | MS.gene49330:intron | 30.0% |
| ! | CTAATTTGCCTATGAAATGT+AGG | + | chr1.1:52826824-52826843 | MS.gene49330:intron | 30.0% |
| ! | GAACAATGCTTACAATTTTG+GGG | - | chr1.1:52826634-52826653 | None:intergenic | 30.0% |
| ! | TTGCCATTTCGTAAATTTGA+GGG | - | chr1.1:52827222-52827241 | None:intergenic | 30.0% |
| ! | TTTGCCATTTCGTAAATTTG+AGG | - | chr1.1:52827223-52827242 | None:intergenic | 30.0% |
| ! | TTTTATTGTCTTGTATCCTG+TGG | + | chr1.1:52827580-52827599 | MS.gene49330:intron | 30.0% |
| !! | CATGTTGGTAATGAAATCTA+TGG | + | chr1.1:52827693-52827712 | MS.gene49330:CDS | 30.0% |
| !!! | GATGTTTTTTATTTGCATGC+AGG | + | chr1.1:52829132-52829151 | MS.gene49330:intron | 30.0% |
| !!! | GTTTTTGGTGTAGAAACATT+GGG | + | chr1.1:52827602-52827621 | MS.gene49330:intron | 30.0% |
| AAAATGATTCACTGTCATGG+TGG | + | chr1.1:52827869-52827888 | MS.gene49330:intron | 35.0% | |
| ACATCAATCTTCTTTGATCC+GGG | + | chr1.1:52828124-52828143 | MS.gene49330:CDS | 35.0% | |
| ACTCTTGAGTGCAAACTAAT+TGG | + | chr1.1:52829761-52829780 | MS.gene49330:intron | 35.0% | |
| AGGTAAAAATAAACCTTGGG+AGG | - | chr1.1:52826189-52826208 | None:intergenic | 35.0% | |
| AGTCCCTCAAATTTACGAAA+TGG | + | chr1.1:52827216-52827235 | MS.gene49330:intron | 35.0% | |
| CACATCAATCTTCTTTGATC+CGG | + | chr1.1:52828123-52828142 | MS.gene49330:CDS | 35.0% | |
| CACTCTACTTAACTTTGCTA+CGG | + | chr1.1:52829401-52829420 | MS.gene49330:intron | 35.0% | |
| CAGCATATCACAAATAGTAG+AGG | - | chr1.1:52828327-52828346 | None:intergenic | 35.0% | |
| CTCTACTATTTGTGATATGC+TGG | + | chr1.1:52828325-52828344 | MS.gene49330:intron | 35.0% | |
| CTTATGAAACACTTCTATGC+TGG | + | chr1.1:52827805-52827824 | MS.gene49330:CDS | 35.0% | |
| GACTGACCCTTACAATTTAA+AGG | + | chr1.1:52827455-52827474 | MS.gene49330:intron | 35.0% | |
| GGACTTAACTGTGTATCAAT+TGG | + | chr1.1:52827669-52827688 | MS.gene49330:CDS | 35.0% | |
| GGTATGAAGTGGCAAAATTA+AGG | + | chr1.1:52828990-52829009 | MS.gene49330:intron | 35.0% | |
| GTGAATTGTGAGTTTAAAGG+GGG | + | chr1.1:52828870-52828889 | MS.gene49330:intron | 35.0% | |
| GTGATACTGAGATTGAGAAT+TGG | - | chr1.1:52825985-52826004 | None:intergenic | 35.0% | |
| GTTGGACACATGTGTAAAAA+TGG | - | chr1.1:52828913-52828932 | None:intergenic | 35.0% | |
| TAAAAATAAACCTTGGGAGG+TGG | - | chr1.1:52826186-52826205 | None:intergenic | 35.0% | |
| TAAAGCTCTCATGGAACATT+TGG | + | chr1.1:52826152-52826171 | MS.gene49330:CDS | 35.0% | |
| TAGCAAAGTTAAGTAGAGTG+TGG | - | chr1.1:52829401-52829420 | None:intergenic | 35.0% | |
| TCCAAAATTCACGATCTTCA+TGG | - | chr1.1:52830005-52830024 | None:intergenic | 35.0% | |
| TGAACATTGTTGACAGTGTT+GGG | + | chr1.1:52829806-52829825 | MS.gene49330:CDS | 35.0% | |
| TGAATTGTGAGTTTAAAGGG+GGG | + | chr1.1:52828871-52828890 | MS.gene49330:intron | 35.0% | |
| TGAGAAGTTACCTTAAATGC+AGG | - | chr1.1:52829298-52829317 | None:intergenic | 35.0% | |
| TGTGTATCAATTGGTCATGT+TGG | + | chr1.1:52827678-52827697 | MS.gene49330:CDS | 35.0% | |
| TTAGCATTTGCAAATGCAGT+AGG | + | chr1.1:52829895-52829914 | MS.gene49330:CDS | 35.0% | |
| TTGATCCTTTACAGAGACAT+GGG | + | chr1.1:52827835-52827854 | MS.gene49330:CDS | 35.0% | |
| TTTGTAGCTGCTATTGCATA+TGG | + | chr1.1:52829841-52829860 | MS.gene49330:CDS | 35.0% | |
| ! | ATATGAAGAGCACACAAAAG+TGG | - | chr1.1:52827543-52827562 | None:intergenic | 35.0% |
| ! | GAATTTGGATTGGAAGAAAG+TGG | - | chr1.1:52825941-52825960 | None:intergenic | 35.0% |
| ! | TATGAAGAGCACACAAAAGT+GGG | - | chr1.1:52827542-52827561 | None:intergenic | 35.0% |
| ! | TCCATGAAGATCGTGAATTT+TGG | + | chr1.1:52830001-52830020 | MS.gene49330:CDS | 35.0% |
| ! | TTCATAGGCAAATTAGCTTC+TGG | + | chr1.1:52826928-52826947 | MS.gene49330:intron | 35.0% |
| !! | CACTTTCTTTTCAAGAACGT+CGG | - | chr1.1:52830028-52830047 | None:intergenic | 35.0% |
| !! | CTCCCCTTTTAAGAGTAAAT+AGG | - | chr1.1:52827151-52827170 | None:intergenic | 35.0% |
| !! | GCATAGAAGTGTTTCATAAG+AGG | - | chr1.1:52827805-52827824 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGTGTAGAAACAT+TGG | + | chr1.1:52827601-52827620 | MS.gene49330:intron | 35.0% |
| AAACGGGCACATTGTTGTAT+TGG | + | chr1.1:52826483-52826502 | MS.gene49330:intron | 40.0% | |
| AACACAGAGATTACCCAAAG+TGG | - | chr1.1:52826082-52826101 | None:intergenic | 40.0% | |
| AACCACGTCAAATGTTCAGA+AGG | - | chr1.1:52829544-52829563 | None:intergenic | 40.0% | |
| AACTCTTGCCCAGCTAATAT+CGG | - | chr1.1:52829184-52829203 | None:intergenic | 40.0% | |
| AATACAACAATGTGCCCGTT+TGG | - | chr1.1:52826484-52826503 | None:intergenic | 40.0% | |
| ACTACTGAGAGTAGTAAACC+AGG | - | chr1.1:52828082-52828101 | None:intergenic | 40.0% | |
| AGAAAGGGGATGGAGAATTT+AGG | - | chr1.1:52825906-52825925 | None:intergenic | 40.0% | |
| ATAGGAGATCCGATATTAGC+TGG | + | chr1.1:52829172-52829191 | MS.gene49330:CDS | 40.0% | |
| ATTTGCAAATGCAGTAGGTG+CGG | + | chr1.1:52829900-52829919 | MS.gene49330:CDS | 40.0% | |
| CAAAACCCATGTCTCTGTAA+AGG | - | chr1.1:52827843-52827862 | None:intergenic | 40.0% | |
| CAACTTTGTCCCATTTGACA+AGG | + | chr1.1:52830107-52830126 | MS.gene49330:CDS | 40.0% | |
| CATTGTTCAAATTTGTCCCG+CGG | + | chr1.1:52826646-52826665 | MS.gene49330:intron | 40.0% | |
| CTAAAATCAGCTCGACTAGT+AGG | - | chr1.1:52827950-52827969 | None:intergenic | 40.0% | |
| GAAAGGGGATGGAGAATTTA+GGG | - | chr1.1:52825905-52825924 | None:intergenic | 40.0% | |
| GAATGATAGTCAGCACTGTT+TGG | - | chr1.1:52827517-52827536 | None:intergenic | 40.0% | |
| GAATTGTGAGTTTAAAGGGG+GGG | + | chr1.1:52828872-52828891 | MS.gene49330:intron | 40.0% | |
| GCAAGGATCCTGCATTTAAT+TGG | + | chr1.1:52827969-52827988 | MS.gene49330:CDS | 40.0% | |
| GCTTTACGTTCTTCAACAGA+AGG | - | chr1.1:52826138-52826157 | None:intergenic | 40.0% | |
| GGCAAGAGTTGCTTAAAAGA+GGG | + | chr1.1:52829194-52829213 | MS.gene49330:CDS | 40.0% | |
| GTGAACATTGTTGACAGTGT+TGG | + | chr1.1:52829805-52829824 | MS.gene49330:CDS | 40.0% | |
| GTTGATCCTTTACAGAGACA+TGG | + | chr1.1:52827834-52827853 | MS.gene49330:CDS | 40.0% | |
| GTTTCTACACCAAAAACCAC+AGG | - | chr1.1:52827599-52827618 | None:intergenic | 40.0% | |
| TAGGAGATCCGATATTAGCT+GGG | + | chr1.1:52829173-52829192 | MS.gene49330:CDS | 40.0% | |
| TCAGAATGATGGTTTCACGT+TGG | - | chr1.1:52828931-52828950 | None:intergenic | 40.0% | |
| TCTTCTTCTAACATCTGACG+AGG | + | chr1.1:52828225-52828244 | MS.gene49330:CDS | 40.0% | |
| TGAAGAACGTAAAGCTCTCA+TGG | + | chr1.1:52826143-52826162 | MS.gene49330:CDS | 40.0% | |
| TGATGTAGGATCGATGTTGA+TGG | + | chr1.1:52826962-52826981 | MS.gene49330:intron | 40.0% | |
| TGCCAATTTGGAAAAAACCG+CGG | - | chr1.1:52826666-52826685 | None:intergenic | 40.0% | |
| TGGAGACGTATTTGCCAATT+TGG | - | chr1.1:52826678-52826697 | None:intergenic | 40.0% | |
| TGGTTTACTACTCTCAGTAG+TGG | + | chr1.1:52828081-52828100 | MS.gene49330:CDS | 40.0% | |
| TTACAATCACCCACTTTGTG+CGG | - | chr1.1:52829222-52829241 | None:intergenic | 40.0% | |
| TTACGTTCTTCAACAGAAGG+AGG | - | chr1.1:52826135-52826154 | None:intergenic | 40.0% | |
| TTGCTCAGCCAATTAAATGC+AGG | - | chr1.1:52827980-52827999 | None:intergenic | 40.0% | |
| ! | CAAATTAGCTTCTGGTGTGT+TGG | + | chr1.1:52826936-52826955 | MS.gene49330:intron | 40.0% |
| ! | GAATGTAGCATCTCTGGAAA+AGG | + | chr1.1:52829951-52829970 | MS.gene49330:CDS | 40.0% |
| ! | GGATTTGATGATTTCTCTCC+TGG | + | chr1.1:52828061-52828080 | MS.gene49330:CDS | 40.0% |
| ! | GTCTTGTATCCTGTGGTTTT+TGG | + | chr1.1:52827587-52827606 | MS.gene49330:intron | 40.0% |
| ! | GTCTTTGGAAACTCAAGCTT+GGG | - | chr1.1:52830150-52830169 | None:intergenic | 40.0% |
| ! | GTTTTACACTGACATCCAAC+AGG | - | chr1.1:52829019-52829038 | None:intergenic | 40.0% |
| ! | TGATTTGGAGCTGTGATTGT+TGG | + | chr1.1:52828808-52828827 | MS.gene49330:intron | 40.0% |
| ! | TGTCTTTGGAAACTCAAGCT+TGG | - | chr1.1:52830151-52830170 | None:intergenic | 40.0% |
| !! | AGAATTTAGGGTTTTGGTGG+TGG | - | chr1.1:52825893-52825912 | None:intergenic | 40.0% |
| !! | GCAGTAACTTTTGTTGTCAG+AGG | + | chr1.1:52826729-52826748 | MS.gene49330:intron | 40.0% |
| !! | GGATGGAGAATTTAGGGTTT+TGG | - | chr1.1:52825899-52825918 | None:intergenic | 40.0% |
| !! | TACAGAGACATGGGTTTTGT+AGG | + | chr1.1:52827844-52827863 | MS.gene49330:CDS | 40.0% |
| !! | TAGTCGAGCTGATTTTAGCA+AGG | + | chr1.1:52827952-52827971 | MS.gene49330:intron | 40.0% |
| !! | TGGAGAATTTAGGGTTTTGG+TGG | - | chr1.1:52825896-52825915 | None:intergenic | 40.0% |
| AACAATGTGCCCGTTTGGAT+TGG | - | chr1.1:52826479-52826498 | None:intergenic | 45.0% | |
| AACGCTTCTCAGCTTCGAAT+CGG | - | chr1.1:52826037-52826056 | None:intergenic | 45.0% | |
| AGAAACATTGGGAAGCTGGT+GGG | + | chr1.1:52827613-52827632 | MS.gene49330:intron | 45.0% | |
| AGTAGTCCACAACTAAGAGG+GGG | - | chr1.1:52828561-52828580 | None:intergenic | 45.0% | |
| AGTGGCAACATCAACGTGTT+TGG | - | chr1.1:52826064-52826083 | None:intergenic | 45.0% | |
| ATGCAGGCTGAGTCATTAAC+TGG | + | chr1.1:52829148-52829167 | MS.gene49330:intron | 45.0% | |
| ATTGGAAGAAAGTGGCATGG+TGG | - | chr1.1:52825933-52825952 | None:intergenic | 45.0% | |
| CAGAGATGCTACATTCCTAC+CGG | - | chr1.1:52829947-52829966 | None:intergenic | 45.0% | |
| CAGAGGCAACCTTGTCAAAT+GGG | - | chr1.1:52830119-52830138 | None:intergenic | 45.0% | |
| CAGTAGTCCACAACTAAGAG+GGG | - | chr1.1:52828562-52828581 | None:intergenic | 45.0% | |
| CCAGTAGTCCACAACTAAGA+GGG | - | chr1.1:52828563-52828582 | None:intergenic | 45.0% | |
| GAGCTCTTAACCAGTTTCTG+AGG | + | chr1.1:52828191-52828210 | MS.gene49330:CDS | 45.0% | |
| GATGATACTGTCAGCAGTTC+TGG | + | chr1.1:52827777-52827796 | MS.gene49330:CDS | 45.0% | |
| GCAAAATTAAGGGCTCCTGT+TGG | + | chr1.1:52829001-52829020 | MS.gene49330:intron | 45.0% | |
| GCCAATTTGGAAAAAACCGC+GGG | - | chr1.1:52826665-52826684 | None:intergenic | 45.0% | |
| GCTGAGTCATTAACTGGCAT+AGG | + | chr1.1:52829154-52829173 | MS.gene49330:CDS | 45.0% | |
| GCTTGAGTTTCCAAAGACAG+TGG | + | chr1.1:52830152-52830171 | MS.gene49330:CDS | 45.0% | |
| GGGCAAGAGTTGCTTAAAAG+AGG | + | chr1.1:52829193-52829212 | MS.gene49330:CDS | 45.0% | |
| GTGTAGAAACATTGGGAAGC+TGG | + | chr1.1:52827609-52827628 | MS.gene49330:intron | 45.0% | |
| TAGAAACATTGGGAAGCTGG+TGG | + | chr1.1:52827612-52827631 | MS.gene49330:intron | 45.0% | |
| TCAGAGGCAACCTTGTCAAA+TGG | - | chr1.1:52830120-52830139 | None:intergenic | 45.0% | |
| TCAGATGTGCTTCGTGATGA+GGG | + | chr1.1:52827726-52827745 | MS.gene49330:CDS | 45.0% | |
| TCCAGTAGTCCACAACTAAG+AGG | - | chr1.1:52828564-52828583 | None:intergenic | 45.0% | |
| ! | ACACGTTGATGTTGCCACTT+TGG | + | chr1.1:52826065-52826084 | MS.gene49330:CDS | 45.0% |
| ! | ATTGTTGACAGTGTTGGGTG+TGG | + | chr1.1:52829811-52829830 | MS.gene49330:CDS | 45.0% |
| ! | TGGATTGGAAGAAAGTGGCA+TGG | - | chr1.1:52825936-52825955 | None:intergenic | 45.0% |
| ! | TGGCATGGTGGTGATAGAAA+GGG | - | chr1.1:52825921-52825940 | None:intergenic | 45.0% |
| ! | TGTTGTCAGAGGTGATGATG+TGG | + | chr1.1:52826740-52826759 | MS.gene49330:intron | 45.0% |
| !! | ATGAGGGCATTAGCATGGTT+GGG | + | chr1.1:52827742-52827761 | MS.gene49330:CDS | 45.0% |
| !! | CACGTTGATGTTGCCACTTT+GGG | + | chr1.1:52826066-52826085 | MS.gene49330:CDS | 45.0% |
| !! | TGGTGTGTTGGCATTGATGT+AGG | + | chr1.1:52826948-52826967 | MS.gene49330:intron | 45.0% |
| !!! | TCCCGCGGTTTTTTCCAAAT+TGG | + | chr1.1:52826661-52826680 | MS.gene49330:intron | 45.0% |
| !!! | TTTAGGGTTTTGGTGGTGGA+TGG | - | chr1.1:52825889-52825908 | None:intergenic | 45.0% |
| AAAGAGGGATCCGCACAAAG+TGG | + | chr1.1:52829209-52829228 | MS.gene49330:CDS | 50.0% | |
| AAGAGGGATCCGCACAAAGT+GGG | + | chr1.1:52829210-52829229 | MS.gene49330:CDS | 50.0% | |
| ACAGAAGGAGGTGGCAATTG+TGG | - | chr1.1:52826123-52826142 | None:intergenic | 50.0% | |
| AGCGTGTGCACCTGCATTTA+AGG | + | chr1.1:52829285-52829304 | MS.gene49330:CDS | 50.0% | |
| AGCTGGTGGGAACTGCAATA+TGG | + | chr1.1:52827626-52827645 | MS.gene49330:CDS | 50.0% | |
| ATAAACCTTGGGAGGTGGAG+AGG | - | chr1.1:52826181-52826200 | None:intergenic | 50.0% | |
| ATATGGCCATAGCAGCTGCA+AGG | + | chr1.1:52827643-52827662 | MS.gene49330:CDS | 50.0% | |
| CGGTAGGAATGTAGCATCTC+TGG | + | chr1.1:52829945-52829964 | MS.gene49330:CDS | 50.0% | |
| CGTCACTCATCCTCAGAAAC+TGG | - | chr1.1:52828204-52828223 | None:intergenic | 50.0% | |
| CGTTCTTCAACAGAAGGAGG+TGG | - | chr1.1:52826132-52826151 | None:intergenic | 50.0% | |
| CTGTTGTTCTTGAGTCCCAG+AGG | - | chr1.1:52828170-52828189 | None:intergenic | 50.0% | |
| GGCACATTCTCCACTGTCTT+TGG | - | chr1.1:52830165-52830184 | None:intergenic | 50.0% | |
| GGCCTTCTGAACATTTGACG+TGG | + | chr1.1:52829539-52829558 | MS.gene49330:intron | 50.0% | |
| GGGCTGACATGTCAGAATGA+TGG | - | chr1.1:52828942-52828961 | None:intergenic | 50.0% | |
| GGGGGCAGAAACACTGTATA+AGG | - | chr1.1:52828543-52828562 | None:intergenic | 50.0% | |
| GTCAGATGTGCTTCGTGATG+AGG | + | chr1.1:52827725-52827744 | MS.gene49330:CDS | 50.0% | |
| TTTCTGCCCCCTCTTAGTTG+TGG | + | chr1.1:52828552-52828571 | MS.gene49330:intron | 50.0% | |
| ! | CCCTCTTAGTTGTGGACTAC+TGG | + | chr1.1:52828560-52828579 | MS.gene49330:intron | 50.0% |
| ! | GATTCGAAGCTGAGAAGCGT+TGG | + | chr1.1:52826036-52826055 | MS.gene49330:CDS | 50.0% |
| ! | GGCATGGTGGTGATAGAAAG+GGG | - | chr1.1:52825920-52825939 | None:intergenic | 50.0% |
| ! | GTGGACTGTGCTGTTGAAGT+TGG | + | chr1.1:52828100-52828119 | MS.gene49330:CDS | 50.0% |
| ! | GTGGCATGGTGGTGATAGAA+AGG | - | chr1.1:52825922-52825941 | None:intergenic | 50.0% |
| ! | TGATGATGTGGCGCGTTACT+TGG | + | chr1.1:52826752-52826771 | MS.gene49330:intron | 50.0% |
| ! | TGGTGGTGATAGAAAGGGGA+TGG | - | chr1.1:52825916-52825935 | None:intergenic | 50.0% |
| !! | GATGAGGGCATTAGCATGGT+TGG | + | chr1.1:52827741-52827760 | MS.gene49330:CDS | 50.0% |
| !! | TCGTGATGAGGGCATTAGCA+TGG | + | chr1.1:52827737-52827756 | MS.gene49330:CDS | 50.0% |
| AAGCTTGGGCAAGAGCTCAG+AGG | - | chr1.1:52830136-52830155 | None:intergenic | 55.0% | |
| GTGGAAAGAGCCTCTCCTCT+GGG | + | chr1.1:52828152-52828171 | MS.gene49330:CDS | 55.0% | |
| GTGGATGGAACTGAGAGGAG+AGG | - | chr1.1:52825874-52825893 | None:intergenic | 55.0% | |
| GTTCTTGAGTCCCAGAGGAG+AGG | - | chr1.1:52828165-52828184 | None:intergenic | 55.0% | |
| TTCTTTGATCCGGGACCACG+TGG | + | chr1.1:52828133-52828152 | MS.gene49330:CDS | 55.0% | |
| !! | TCCTAGCCTTGCAGCTGCTA+TGG | - | chr1.1:52827652-52827671 | None:intergenic | 55.0% |
| !! | TGGTGGTGGATGGAACTGAG+AGG | - | chr1.1:52825879-52825898 | None:intergenic | 55.0% |
| AGGCTCTTTCCACGTGGTCC+CGG | - | chr1.1:52828145-52828164 | None:intergenic | 60.0% | |
| AGTAGGTGCGGCAACAGCCA+TGG | + | chr1.1:52829912-52829931 | MS.gene49330:CDS | 60.0% | |
| CGTGGAAAGAGCCTCTCCTC+TGG | + | chr1.1:52828151-52828170 | MS.gene49330:CDS | 60.0% | |
| GAGGAGAGGCTCTTTCCACG+TGG | - | chr1.1:52828151-52828170 | None:intergenic | 60.0% | |
| GCCATAGCAGCTGCAAGGCT+AGG | + | chr1.1:52827648-52827667 | MS.gene49330:CDS | 60.0% | |
| GTAGGTGCGGCAACAGCCAT+GGG | + | chr1.1:52829913-52829932 | MS.gene49330:CDS | 60.0% | |
| GGCTTCCTCTCCACCTCCCA+AGG | + | chr1.1:52826173-52826192 | MS.gene49330:CDS | 65.0% | |
| ! | ACAGCCATGGGCTGTGGTGC+CGG | + | chr1.1:52829925-52829944 | MS.gene49330:CDS | 65.0% |
| CCTACCGGCACCACAGCCCA+TGG | - | chr1.1:52829932-52829951 | None:intergenic | 70.0% | |
| ! | GCGGCAACAGCCATGGGCTG+TGG | + | chr1.1:52829919-52829938 | MS.gene49330:CDS | 70.0% |
| !! | CCATGGGCTGTGGTGCCGGT+AGG | + | chr1.1:52829929-52829948 | MS.gene49330:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52825868 | 52830191 | 52825868 | ID=MS.gene49330 |
| chr1.1 | mRNA | 52825868 | 52830191 | 52825868 | ID=MS.gene49330.t1;Parent=MS.gene49330 |
| chr1.1 | exon | 52825868 | 52826194 | 52825868 | ID=MS.gene49330.t1.exon1;Parent=MS.gene49330.t1 |
| chr1.1 | CDS | 52825868 | 52826194 | 52825868 | ID=cds.MS.gene49330.t1;Parent=MS.gene49330.t1 |
| chr1.1 | exon | 52827615 | 52827865 | 52827615 | ID=MS.gene49330.t1.exon2;Parent=MS.gene49330.t1 |
| chr1.1 | CDS | 52827615 | 52827865 | 52827615 | ID=cds.MS.gene49330.t1;Parent=MS.gene49330.t1 |
| chr1.1 | exon | 52827955 | 52828246 | 52827955 | ID=MS.gene49330.t1.exon3;Parent=MS.gene49330.t1 |
| chr1.1 | CDS | 52827955 | 52828246 | 52827955 | ID=cds.MS.gene49330.t1;Parent=MS.gene49330.t1 |
| chr1.1 | exon | 52829154 | 52829306 | 52829154 | ID=MS.gene49330.t1.exon4;Parent=MS.gene49330.t1 |
| chr1.1 | CDS | 52829154 | 52829306 | 52829154 | ID=cds.MS.gene49330.t1;Parent=MS.gene49330.t1 |
| chr1.1 | exon | 52829805 | 52830191 | 52829805 | ID=MS.gene49330.t1.exon5;Parent=MS.gene49330.t1 |
| chr1.1 | CDS | 52829805 | 52830191 | 52829805 | ID=cds.MS.gene49330.t1;Parent=MS.gene49330.t1 |
| Gene Sequence |
| Protein sequence |
