Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49338.t1 | GAU44818.1 | 100 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 3.20E-79 | 304.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49338.t1 | Q08112 | 94.1 | 152 | 9 | 0 | 1 | 152 | 1 | 152 | 1.5e-77 | 290.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49338.t1 | A0A2Z6NJY7 | 100.0 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 2.3e-79 | 304.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60716 | MS.gene49338 | PPI |
| MS.gene88892 | MS.gene49338 | PPI |
| MS.gene006122 | MS.gene49338 | PPI |
| MS.gene006126 | MS.gene49338 | PPI |
| MS.gene80490 | MS.gene49338 | PPI |
| MS.gene006123 | MS.gene49338 | PPI |
| MS.gene62695 | MS.gene49338 | PPI |
| MS.gene03522 | MS.gene49338 | PPI |
| MS.gene97614 | MS.gene49338 | PPI |
| MS.gene60717 | MS.gene49338 | PPI |
| MS.gene054292 | MS.gene49338 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49338.t1 | MTR_1g070450 | 99.342 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 3.72e-109 | 307 |
| MS.gene49338.t1 | MTR_8g105110 | 96.104 | 154 | 4 | 1 | 1 | 152 | 1 | 154 | 2.04e-104 | 295 |
| MS.gene49338.t1 | MTR_4g075450 | 96.053 | 152 | 6 | 0 | 1 | 152 | 1 | 152 | 5.01e-104 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49338.t1 | AT5G09510 | 94.079 | 152 | 9 | 0 | 1 | 152 | 1 | 152 | 6.54e-96 | 273 |
| MS.gene49338.t1 | AT1G04270 | 94.079 | 152 | 9 | 0 | 1 | 152 | 1 | 152 | 1.01e-95 | 273 |
| MS.gene49338.t1 | AT5G09500 | 88.816 | 152 | 15 | 1 | 1 | 152 | 1 | 150 | 9.49e-95 | 270 |
| MS.gene49338.t1 | AT1G04270 | 93.421 | 152 | 9 | 1 | 1 | 152 | 1 | 151 | 3.79e-93 | 266 |
| MS.gene49338.t1 | AT5G09490 | 82.237 | 152 | 27 | 0 | 1 | 152 | 1 | 152 | 1.13e-90 | 260 |
| MS.gene49338.t1 | AT5G43640 | 87.919 | 149 | 18 | 0 | 4 | 152 | 1 | 149 | 4.25e-85 | 246 |
| MS.gene49338.t1 | AT5G09510 | 94.915 | 118 | 6 | 0 | 35 | 152 | 1 | 118 | 4.06e-71 | 209 |
| MS.gene49338.t1 | AT5G63070 | 62.500 | 160 | 52 | 3 | 1 | 152 | 1 | 160 | 3.81e-63 | 191 |
| MS.gene49338.t1 | AT1G33850 | 80.597 | 67 | 13 | 0 | 4 | 70 | 1 | 67 | 2.45e-22 | 84.7 |
Find 49 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAAATGTTCTCTTCTT+TGG | 0.218192 | 1.1:-52962267 | None:intergenic |
| AGGTGAGTCCTCACTGGTTC+TGG | 0.300992 | 1.1:-52963853 | None:intergenic |
| TCTCTGCTCGTGCCCGTAGA+AGG | 0.321654 | 1.1:+52962358 | MS.gene49338:CDS |
| CCAGGCCTACCGTGCTTAAC+AGG | 0.333020 | 1.1:-52964009 | None:intergenic |
| AGATAATGGCCAATCATTTC+AGG | 0.354175 | 1.1:-52963961 | None:intergenic |
| GATGAGTGCCATAGGCTTGC+GGG | 0.362183 | 1.1:-52962849 | None:intergenic |
| TGAAATGATTGGCCATTATC+TGG | 0.368757 | 1.1:+52963963 | MS.gene49338:CDS |
| GAAATTAAGCCTGAAATGAT+TGG | 0.379557 | 1.1:+52963952 | MS.gene49338:CDS |
| ATTCAAAACTATACCTTCTA+CGG | 0.391703 | 1.1:-52962371 | None:intergenic |
| CTTAATTTCAACTTGGTTGA+AGG | 0.392478 | 1.1:-52963938 | None:intergenic |
| TTGAGAATTCAGCCAGATAA+TGG | 0.430982 | 1.1:-52963975 | None:intergenic |
| ACTCCTTGTGCAGCTACCTC+TGG | 0.435684 | 1.1:-52962243 | None:intergenic |
| CAGGCACAATGATCATGTTC+CGG | 0.445462 | 1.1:-52963876 | None:intergenic |
| TGTTGATCTCGATGCTCTCT+TGG | 0.464094 | 1.1:+52962305 | MS.gene49338:CDS |
| GAGATGATCGGTAGCATCAT+TGG | 0.480540 | 1.1:+52963898 | MS.gene49338:CDS |
| CCTGTTAAGCACGGTAGGCC+TGG | 0.480548 | 1.1:+52964009 | MS.gene49338:CDS |
| ACAGAAAAGGGAAGCACCAC+CGG | 0.488317 | 1.1:+52963822 | MS.gene49338:intron |
| ACTGGTTCTGGCTTCTCACC+CGG | 0.493454 | 1.1:-52963841 | None:intergenic |
| TTGGTGCTACTCACTCCTCC+AGG | 0.496949 | 1.1:+52964034 | MS.gene49338:CDS |
| TGGTTTGACCCGCAAGCCTA+TGG | 0.497772 | 1.1:+52962841 | MS.gene49338:CDS |
| TGATGAGTGCCATAGGCTTG+CGG | 0.517926 | 1.1:-52962850 | None:intergenic |
| TTCAAAACTATACCTTCTAC+GGG | 0.534499 | 1.1:-52962370 | None:intergenic |
| TTCCGGAGGTGAGTCCTCAC+TGG | 0.534948 | 1.1:-52963859 | None:intergenic |
| ATGATGCTACCGATCATCTC+AGG | 0.536560 | 1.1:-52963895 | None:intergenic |
| AAGCACGGTAGGCCTGGTAT+TGG | 0.547800 | 1.1:+52964015 | MS.gene49338:CDS |
| TTTCAGGCTTAATTTCAACT+TGG | 0.556240 | 1.1:-52963945 | None:intergenic |
| CAGAAAAGGGAAGCACCACC+GGG | 0.559817 | 1.1:+52963823 | MS.gene49338:intron |
| AACCAGTGAGGACTCACCTC+CGG | 0.568038 | 1.1:+52963857 | MS.gene49338:CDS |
| AGCATCATTGGTGTCTACAA+TGG | 0.572789 | 1.1:+52963910 | MS.gene49338:CDS |
| GAGTGAGTAGCACCAATACC+AGG | 0.575625 | 1.1:-52964027 | None:intergenic |
| TTTAAGAAGTTCAGTTTCCG+TGG | 0.586451 | 1.1:+52962282 | MS.gene49338:CDS |
| AGCTTCTTGATGAGTGCCAT+AGG | 0.595409 | 1.1:-52962857 | None:intergenic |
| ACAAGCCTGTTAAGCACGGT+AGG | 0.596494 | 1.1:+52964004 | MS.gene49338:CDS |
| GAACCAGAGGTAGCTGCACA+AGG | 0.605663 | 1.1:+52962240 | MS.gene49338:CDS |
| TCACTTCAGAGGAATAAACC+TGG | 0.626759 | 1.1:-52964052 | None:intergenic |
| AAGCTTGACAAGTTCATCAG+TGG | 0.629931 | 1.1:-52962334 | None:intergenic |
| GATGACAATCTTCACTTCAG+AGG | 0.634610 | 1.1:-52964063 | None:intergenic |
| TCTTACAAGCCTGTTAAGCA+CGG | 0.639372 | 1.1:+52964000 | MS.gene49338:CDS |
| TCAGGCGGATGTTGAACCAG+AGG | 0.645787 | 1.1:+52962227 | MS.gene49338:intron |
| GGTTCTGGCTTCTCACCCGG+TGG | 0.646985 | 1.1:-52963838 | None:intergenic |
| ACTCATCAAGAAGCTCCGCA+AGG | 0.648877 | 1.1:+52962865 | MS.gene49338:CDS |
| ATCATTGTGCCTGAGATGAT+CGG | 0.650070 | 1.1:+52963886 | MS.gene49338:CDS |
| ACAGATAACTCACCGCCTTG+CGG | 0.662337 | 1.1:-52962880 | None:intergenic |
| GCACAATGATCATGTTCCGG+AGG | 0.663332 | 1.1:-52963873 | None:intergenic |
| GTGAGAAGCCAGAACCAGTG+AGG | 0.711539 | 1.1:+52963845 | MS.gene49338:CDS |
| CATCAAGAAGCTCCGCAAGG+CGG | 0.735053 | 1.1:+52962868 | MS.gene49338:CDS |
| CTTCAGAGGAATAAACCTGG+AGG | 0.744280 | 1.1:-52964049 | None:intergenic |
| GTTCATTTCAGGTTTCAACG+TGG | 0.745899 | 1.1:+52962821 | MS.gene49338:intron |
| GAGCATCGAGATCAACACCA+CGG | 0.745908 | 1.1:-52962299 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGGAAATTGTTTATTT+AGG | + | chr1.1:52963035-52963054 | MS.gene49338:intron | 15.0% |
| !! | ATTTGGAAATTGTTTATTTA+GGG | + | chr1.1:52963036-52963055 | MS.gene49338:intron | 15.0% |
| !!! | TTCATTTTGTTTTATTTTGT+GGG | + | chr1.1:52962604-52962623 | MS.gene49338:intron | 15.0% |
| !!! | TTTCATTTTGTTTTATTTTG+TGG | + | chr1.1:52962603-52962622 | MS.gene49338:intron | 15.0% |
| !! | AACCTAAAATATTCAACATT+TGG | - | chr1.1:52962577-52962596 | None:intergenic | 20.0% |
| !! | AATATACTGTCTTAAATTTG+GGG | + | chr1.1:52963329-52963348 | MS.gene49338:intron | 20.0% |
| !! | ACAATATACTGTCTTAAATT+TGG | + | chr1.1:52963327-52963346 | MS.gene49338:intron | 20.0% |
| !! | CAATATACTGTCTTAAATTT+GGG | + | chr1.1:52963328-52963347 | MS.gene49338:intron | 20.0% |
| !! | TAACCTAAAAATGATGAAAA+TGG | - | chr1.1:52962549-52962568 | None:intergenic | 20.0% |
| !! | TTAAAATGATAGCAATGATT+GGG | - | chr1.1:52963717-52963736 | None:intergenic | 20.0% |
| !! | TTTAACAATATGTTCATTTC+AGG | + | chr1.1:52962810-52962829 | MS.gene49338:intron | 20.0% |
| !! | TTTGGAAATTGTTTATTTAG+GGG | + | chr1.1:52963037-52963056 | MS.gene49338:intron | 20.0% |
| !!! | ATGAATTTGATTGATTTTTC+AGG | + | chr1.1:52962209-52962228 | MS.gene49338:intron | 20.0% |
| !!! | TTCATCATTTTTAGGTTATT+TGG | + | chr1.1:52962551-52962570 | MS.gene49338:intron | 20.0% |
| !!! | TTCATTTTAAACTTTTGCTA+TGG | + | chr1.1:52963675-52963694 | MS.gene49338:intron | 20.0% |
| !!! | TTTAAAATGATAGCAATGAT+TGG | - | chr1.1:52963718-52963737 | None:intergenic | 20.0% |
| !!! | TTTTATGTTCTGTTACTTAT+AGG | + | chr1.1:52962729-52962748 | MS.gene49338:intron | 20.0% |
| ! | AAAGTAATGAATGGATATGA+AGG | - | chr1.1:52962519-52962538 | None:intergenic | 25.0% |
| ! | ACATTTGAACTTAACAGATA+TGG | + | chr1.1:52963357-52963376 | MS.gene49338:intron | 25.0% |
| ! | ATATACTGTCTTAAATTTGG+GGG | + | chr1.1:52963330-52963349 | MS.gene49338:intron | 25.0% |
| ! | ATTCAAAACTATACCTTCTA+CGG | - | chr1.1:52962374-52962393 | None:intergenic | 25.0% |
| ! | CGTTAATCTGATTTATTATG+AGG | + | chr1.1:52963224-52963243 | MS.gene49338:intron | 25.0% |
| ! | GAATATATGAATGATGAAGA+TGG | + | chr1.1:52962439-52962458 | MS.gene49338:intron | 25.0% |
| ! | GTAAATGTGAAAATGAGAAA+TGG | - | chr1.1:52962789-52962808 | None:intergenic | 25.0% |
| ! | TACCAAATTTGTGTATCATT+GGG | + | chr1.1:52963651-52963670 | MS.gene49338:intron | 25.0% |
| ! | TGTATGATTATGTATCTAAC+CGG | + | chr1.1:52963479-52963498 | MS.gene49338:intron | 25.0% |
| ! | TTAGAGTTGTATAAGGAATT+TGG | + | chr1.1:52962961-52962980 | MS.gene49338:intron | 25.0% |
| ! | TTCTTAAATGTTCTCTTCTT+TGG | - | chr1.1:52962270-52962289 | None:intergenic | 25.0% |
| ! | TTGTATATCCTTACAGAAAA+GGG | + | chr1.1:52963810-52963829 | MS.gene49338:intron | 25.0% |
| !! | CTTTTGCATTTGTATCTTTT+TGG | + | chr1.1:52963174-52963193 | MS.gene49338:intron | 25.0% |
| !!! | AATGTTTTAGATCAAGTAGA+AGG | - | chr1.1:52963285-52963304 | None:intergenic | 25.0% |
| !!! | AATTTGATTGATTTTTCAGG+CGG | + | chr1.1:52962212-52962231 | MS.gene49338:intron | 25.0% |
| !!! | ATGTTTTAGATCAAGTAGAA+GGG | - | chr1.1:52963284-52963303 | None:intergenic | 25.0% |
| !!! | CGTTAATCTGATTTATTTTG+AGG | + | chr1.1:52962489-52962508 | MS.gene49338:intron | 25.0% |
| !!! | GTTTTAGTTGTTGAGTAATT+TGG | + | chr1.1:52963019-52963038 | MS.gene49338:intron | 25.0% |
| AACCCAATGATACACAAATT+TGG | - | chr1.1:52963656-52963675 | None:intergenic | 30.0% | |
| AAGAGAAAGAGATAGAGTTA+GGG | - | chr1.1:52962147-52962166 | None:intergenic | 30.0% | |
| CTAGTTTAATTCAATAGCAG+TGG | + | chr1.1:52963540-52963559 | MS.gene49338:intron | 30.0% | |
| CTTAATTTCAACTTGGTTGA+AGG | - | chr1.1:52963941-52963960 | None:intergenic | 30.0% | |
| CTTGTATATCCTTACAGAAA+AGG | + | chr1.1:52963809-52963828 | MS.gene49338:intron | 30.0% | |
| GAAATTAACACAAGTCCTTA+AGG | - | chr1.1:52962757-52962776 | None:intergenic | 30.0% | |
| GAAATTAAGCCTGAAATGAT+TGG | + | chr1.1:52963952-52963971 | MS.gene49338:CDS | 30.0% | |
| GAAATTGTTTATTTAGGGGA+TGG | + | chr1.1:52963041-52963060 | MS.gene49338:intron | 30.0% | |
| GTACCAAATTTGTGTATCAT+TGG | + | chr1.1:52963650-52963669 | MS.gene49338:intron | 30.0% | |
| TATACTGTCTTAAATTTGGG+GGG | + | chr1.1:52963331-52963350 | MS.gene49338:intron | 30.0% | |
| TTAGTGCTTAGAGTTGTATA+AGG | + | chr1.1:52962954-52962973 | MS.gene49338:intron | 30.0% | |
| TTCAAAACTATACCTTCTAC+GGG | - | chr1.1:52962373-52962392 | None:intergenic | 30.0% | |
| TTTCAGGCTTAATTTCAACT+TGG | - | chr1.1:52963948-52963967 | None:intergenic | 30.0% | |
| ! | ATAAGGAATTTGGAGTTTGT+AGG | + | chr1.1:52962971-52962990 | MS.gene49338:intron | 30.0% |
| ! | GGCCAAATGTTGAATATTTT+AGG | + | chr1.1:52962572-52962591 | MS.gene49338:intron | 30.0% |
| ! | TGTTACTTATAGGATCCTTA+AGG | + | chr1.1:52962739-52962758 | MS.gene49338:intron | 30.0% |
| !! | GCACCATTTTCATCATTTTT+AGG | + | chr1.1:52962543-52962562 | MS.gene49338:intron | 30.0% |
| !! | GTCATCTAATTTGTTGTTTG+AGG | + | chr1.1:52963761-52963780 | MS.gene49338:intron | 30.0% |
| !! | TAGCATTTTGAAGAAATGTG+AGG | + | chr1.1:52962656-52962675 | MS.gene49338:intron | 30.0% |
| AACCTGATGATACACAGATT+TGG | - | chr1.1:52963582-52963601 | None:intergenic | 35.0% | |
| CTAGTTTAATTCGATAGCAG+TGG | + | chr1.1:52963614-52963633 | MS.gene49338:intron | 35.0% | |
| GAAGAGAAAGAGATAGAGTT+AGG | - | chr1.1:52962148-52962167 | None:intergenic | 35.0% | |
| TACCAAATCTGTGTATCATC+AGG | + | chr1.1:52963577-52963596 | MS.gene49338:intron | 35.0% | |
| TTGAGAATTCAGCCAGATAA+TGG | - | chr1.1:52963978-52963997 | None:intergenic | 35.0% | |
| TTTAAGAAGTTCAGTTTCCG+TGG | + | chr1.1:52962282-52962301 | MS.gene49338:CDS | 35.0% | |
| ! | AGATAATGGCCAATCATTTC+AGG | - | chr1.1:52963964-52963983 | None:intergenic | 35.0% |
| ! | TGAAATGATTGGCCATTATC+TGG | + | chr1.1:52963963-52963982 | MS.gene49338:CDS | 35.0% |
| AAGCTTGACAAGTTCATCAG+TGG | - | chr1.1:52962337-52962356 | None:intergenic | 40.0% | |
| ATCAAATCTCCCCACTTAGT+GGG | - | chr1.1:52963109-52963128 | None:intergenic | 40.0% | |
| ATCATTGTGCCTGAGATGAT+CGG | + | chr1.1:52963886-52963905 | MS.gene49338:CDS | 40.0% | |
| ATCTCCTTGACAGATGCATA+TGG | + | chr1.1:52963388-52963407 | MS.gene49338:intron | 40.0% | |
| GGTGCTCAGAAAGTAATGAA+TGG | - | chr1.1:52962528-52962547 | None:intergenic | 40.0% | |
| TCACTTCAGAGGAATAAACC+TGG | - | chr1.1:52964055-52964074 | None:intergenic | 40.0% | |
| TCTTACAAGCCTGTTAAGCA+CGG | + | chr1.1:52964000-52964019 | MS.gene49338:CDS | 40.0% | |
| TGTATCTAACCGGTTGTGTT+AGG | + | chr1.1:52963489-52963508 | MS.gene49338:intron | 40.0% | |
| ! | AGCATCATTGGTGTCTACAA+TGG | + | chr1.1:52963910-52963929 | MS.gene49338:CDS | 40.0% |
| !! | GTTCATTTCAGGTTTCAACG+TGG | + | chr1.1:52962821-52962840 | MS.gene49338:intron | 40.0% |
| AACGCCTTATCCCACTAAGT+GGG | + | chr1.1:52963096-52963115 | MS.gene49338:intron | 45.0% | |
| ACAGCATTGCCTAACACAAC+CGG | - | chr1.1:52963501-52963520 | None:intergenic | 45.0% | |
| AGCTTCTTGATGAGTGCCAT+AGG | - | chr1.1:52962860-52962879 | None:intergenic | 45.0% | |
| ATGATGCTACCGATCATCTC+AGG | - | chr1.1:52963898-52963917 | None:intergenic | 45.0% | |
| CAGGCACAATGATCATGTTC+CGG | - | chr1.1:52963879-52963898 | None:intergenic | 45.0% | |
| CATCAAATCTCCCCACTTAG+TGG | - | chr1.1:52963110-52963129 | None:intergenic | 45.0% | |
| CTTCAGAGGAATAAACCTGG+AGG | - | chr1.1:52964052-52964071 | None:intergenic | 45.0% | |
| GAGATGATCGGTAGCATCAT+TGG | + | chr1.1:52963898-52963917 | MS.gene49338:CDS | 45.0% | |
| TGTTGATCTCGATGCTCTCT+TGG | + | chr1.1:52962305-52962324 | MS.gene49338:CDS | 45.0% | |
| ! | TGGTGCTTCCCTTTTCTGTA+AGG | - | chr1.1:52963821-52963840 | None:intergenic | 45.0% |
| ACAAGCCTGTTAAGCACGGT+AGG | + | chr1.1:52964004-52964023 | MS.gene49338:CDS | 50.0% | |
| ACAGATAACTCACCGCCTTG+CGG | - | chr1.1:52962883-52962902 | None:intergenic | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | + | chr1.1:52963097-52963116 | MS.gene49338:intron | 50.0% | |
| ACTCATCAAGAAGCTCCGCA+AGG | + | chr1.1:52962865-52962884 | MS.gene49338:CDS | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | + | chr1.1:52963095-52963114 | MS.gene49338:intron | 50.0% | |
| GAGTGAGTAGCACCAATACC+AGG | - | chr1.1:52964030-52964049 | None:intergenic | 50.0% | |
| GCACAATGATCATGTTCCGG+AGG | - | chr1.1:52963876-52963895 | None:intergenic | 50.0% | |
| GCAGCCATATGCATCTGTCA+AGG | - | chr1.1:52963395-52963414 | None:intergenic | 50.0% | |
| TCTCCCCACTTAGTGGGATA+AGG | - | chr1.1:52963103-52963122 | None:intergenic | 50.0% | |
| TGATGAGTGCCATAGGCTTG+CGG | - | chr1.1:52962853-52962872 | None:intergenic | 50.0% | |
| !! | ACAGAAAAGGGAAGCACCAC+CGG | + | chr1.1:52963822-52963841 | MS.gene49338:intron | 50.0% |
| !! | GAGCATCGAGATCAACACCA+CGG | - | chr1.1:52962302-52962321 | None:intergenic | 50.0% |
| AACCAGTGAGGACTCACCTC+CGG | + | chr1.1:52963857-52963876 | MS.gene49338:CDS | 55.0% | |
| AAGCACGGTAGGCCTGGTAT+TGG | + | chr1.1:52964015-52964034 | MS.gene49338:CDS | 55.0% | |
| ACTCCTTGTGCAGCTACCTC+TGG | - | chr1.1:52962246-52962265 | None:intergenic | 55.0% | |
| CATCAAGAAGCTCCGCAAGG+CGG | + | chr1.1:52962868-52962887 | MS.gene49338:CDS | 55.0% | |
| GAACCAGAGGTAGCTGCACA+AGG | + | chr1.1:52962240-52962259 | MS.gene49338:CDS | 55.0% | |
| GATGAGTGCCATAGGCTTGC+GGG | - | chr1.1:52962852-52962871 | None:intergenic | 55.0% | |
| GTGAGAAGCCAGAACCAGTG+AGG | + | chr1.1:52963845-52963864 | MS.gene49338:CDS | 55.0% | |
| TCAGGCGGATGTTGAACCAG+AGG | + | chr1.1:52962227-52962246 | MS.gene49338:intron | 55.0% | |
| TGGTTTGACCCGCAAGCCTA+TGG | + | chr1.1:52962841-52962860 | MS.gene49338:CDS | 55.0% | |
| !! | ACTGGTTCTGGCTTCTCACC+CGG | - | chr1.1:52963844-52963863 | None:intergenic | 55.0% |
| !! | AGGTGAGTCCTCACTGGTTC+TGG | - | chr1.1:52963856-52963875 | None:intergenic | 55.0% |
| !! | CAGAAAAGGGAAGCACCACC+GGG | + | chr1.1:52963823-52963842 | MS.gene49338:intron | 55.0% |
| !! | TTGGTGCTACTCACTCCTCC+AGG | + | chr1.1:52964034-52964053 | MS.gene49338:CDS | 55.0% |
| CCAGGCCTACCGTGCTTAAC+AGG | - | chr1.1:52964012-52964031 | None:intergenic | 60.0% | |
| CCTGTTAAGCACGGTAGGCC+TGG | + | chr1.1:52964009-52964028 | MS.gene49338:CDS | 60.0% | |
| TCTCTGCTCGTGCCCGTAGA+AGG | + | chr1.1:52962358-52962377 | MS.gene49338:CDS | 60.0% | |
| TTCCGGAGGTGAGTCCTCAC+TGG | - | chr1.1:52963862-52963881 | None:intergenic | 60.0% | |
| !! | GGTTCTGGCTTCTCACCCGG+TGG | - | chr1.1:52963841-52963860 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52962134 | 52964074 | 52962134 | ID=MS.gene49338 |
| chr1.1 | mRNA | 52962134 | 52964074 | 52962134 | ID=MS.gene49338.t1;Parent=MS.gene49338 |
| chr1.1 | exon | 52962134 | 52962136 | 52962134 | ID=MS.gene49338.t1.exon1;Parent=MS.gene49338.t1 |
| chr1.1 | CDS | 52962134 | 52962136 | 52962134 | ID=cds.MS.gene49338.t1;Parent=MS.gene49338.t1 |
| chr1.1 | exon | 52962231 | 52962379 | 52962231 | ID=MS.gene49338.t1.exon2;Parent=MS.gene49338.t1 |
| chr1.1 | CDS | 52962231 | 52962379 | 52962231 | ID=cds.MS.gene49338.t1;Parent=MS.gene49338.t1 |
| chr1.1 | exon | 52962832 | 52962889 | 52962832 | ID=MS.gene49338.t1.exon3;Parent=MS.gene49338.t1 |
| chr1.1 | CDS | 52962832 | 52962889 | 52962832 | ID=cds.MS.gene49338.t1;Parent=MS.gene49338.t1 |
| chr1.1 | exon | 52963826 | 52964074 | 52963826 | ID=MS.gene49338.t1.exon4;Parent=MS.gene49338.t1 |
| chr1.1 | CDS | 52963826 | 52964074 | 52963826 | ID=cds.MS.gene49338.t1;Parent=MS.gene49338.t1 |
| Gene Sequence |
| Protein sequence |
